From ce0a4a3b314dbdf5855dc236c3a65046359eb08f Mon Sep 17 00:00:00 2001 From: Xavier Besseron Date: Sun, 5 Jun 2016 22:58:56 +0200 Subject: [PATCH 001/845] add easyconfig Valgrind-3.11.0-intel-2016a.eb --- .../v/Valgrind/Valgrind-3.11.0-intel-2016a.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb new file mode 100644 index 0000000000..ec140b0ac3 --- /dev/null +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'Valgrind' +version = '3.11.0' + +homepage = 'http://valgrind.org/downloads/' +description = "Valgrind: Debugging and profiling tools" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://valgrind.org/downloads/'] + +toolchain = {'name': 'intel', 'version': '2016a'} + +configopts = ' --with-mpicc="$MPICC"' + +binaries = [ + 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', + 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'debugger' -- GitLab From 6ac4b8faf734e7cb98b95f2a236953ffb3449dec Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 20 Oct 2016 11:07:03 +0200 Subject: [PATCH 002/845] IQ-TREE ok --- .../i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb new file mode 100644 index 0000000000..e9f01d27b1 --- /dev/null +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb @@ -0,0 +1,20 @@ +easyblock = 'CMakeMake' +name = 'IQ-TREE-MPI' +version = '1.4.4' + +homepage = 'http://www.iqtree.org/' +description = """Efficient phylogenomic software by maximum likelihood""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['https://github.com/Cibiv/IQ-TREE/archive/'] +sources = ['v%(version)s-mpi.tar.gz'] + +configopts = '-DIQTREE_FLAGS="mpi omp" -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx' + +sanity_check_paths = { + 'files': ["bin/iqtree-omp-mpi"], + 'dirs': ["bin"], +} + +moduleclass = 'bio' -- GitLab From 2a08bb814fa6286f1f32546911ebe0ffc1d34bf0 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 20 Oct 2016 11:10:26 +0200 Subject: [PATCH 003/845] typo --- easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb index e9f01d27b1..74ace89264 100644 --- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb @@ -1,5 +1,5 @@ easyblock = 'CMakeMake' -name = 'IQ-TREE-MPI' +name = 'IQ-TREE-mpi' version = '1.4.4' homepage = 'http://www.iqtree.org/' -- GitLab From 49a62ef5759c312042885d72c4d79b5b748ef824 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 20 Oct 2016 15:25:23 +0200 Subject: [PATCH 004/845] add versionsuffix for mpi --- .../easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb index 74ace89264..c29c71702d 100644 --- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb @@ -1,6 +1,7 @@ easyblock = 'CMakeMake' -name = 'IQ-TREE-mpi' +name = 'IQ-TREE' version = '1.4.4' +versionsuffix = "-mpi" homepage = 'http://www.iqtree.org/' description = """Efficient phylogenomic software by maximum likelihood""" -- GitLab From f88fe7dcad9b356c5261c7eedbef696c892aa737 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 20 Oct 2016 16:12:28 +0200 Subject: [PATCH 005/845] rename eb according to travis --- ...EE-mpi-1.4.4-foss-2016a.eb => IQ-TREE-1.4.4-foss-2016a-mpi.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/i/IQ-TREE/{IQ-TREE-mpi-1.4.4-foss-2016a.eb => IQ-TREE-1.4.4-foss-2016a-mpi.eb} (100%) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.4.4-foss-2016a-mpi.eb similarity index 100% rename from easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-mpi-1.4.4-foss-2016a.eb rename to easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.4.4-foss-2016a-mpi.eb -- GitLab From 4840329a61ca0d5cfc32fc5b6e0a6a29df8afa17 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Wed, 15 Feb 2017 10:27:02 +0200 Subject: [PATCH 006/845] adding easyconfigs: OpenMPI-system-GCC-system-2.27.eb, GCC-system-2.27.eb --- .../b/Bison/Bison-3.0.4-GCCcore-system.eb | 25 +++++++++++++++++++ .../binutils/binutils-2.27-GCCcore-system.eb | 19 ++++++++++++++ .../f/flex/flex-2.6.0-GCCcore-system.eb | 23 +++++++++++++++++ .../easyconfigs/g/GCC/GCC-system-2.27.eb | 25 +++++++++++++++++++ .../easyconfigs/g/GCCcore/GCCcore-system.eb | 23 +++++++++++++++++ .../m/M4/M4-1.4.17-GCCcore-system.eb | 25 +++++++++++++++++++ .../OpenMPI/OpenMPI-system-GCC-system-2.27.eb | 14 +++++++++++ .../z/zlib/zlib-1.2.8-GCCcore-system.eb | 22 ++++++++++++++++ 8 files changed, 176 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb create mode 100644 easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb new file mode 100644 index 0000000000..87b1f94e75 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [ + ('M4', '1.4.17'), +] + + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb b/easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb new file mode 100644 index 0000000000..9cbdf3fdca --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb @@ -0,0 +1,19 @@ +name = 'binutils' +version = '2.27' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': 'system'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [ + ('flex', '2.6.0'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.8'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb b/easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb new file mode 100644 index 0000000000..d29e621dd8 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb @@ -0,0 +1,23 @@ +name = 'flex' +version = '2.6.0' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +checksums = [ + '5724bcffed4ebe39e9b55a9be80859ec', # flex-2.6.0.tar.gz +] + +dependencies = [('M4', '1.4.17')] +builddependencies = [ + ('Bison', '3.0.4'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb b/easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb new file mode 100644 index 0000000000..5867f20ead --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb @@ -0,0 +1,25 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = 'system' + +binutilsver = '2.27' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb new file mode 100644 index 0000000000..b263ec656b --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb @@ -0,0 +1,23 @@ +## +# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2015 Juelich Supercomputing Centre, Germany +# Authors:: Bernd Mohr +# License:: 3-clause BSD +## + +easyblock = 'SystemCompiler' + +name = 'GCCcore' +# using 'system' as a version instructs the SystemCompiler easyblock to derive the actual compiler version, +# and define $EBVERSION* accordingly (yet generate a module named GCC/system); +# if an actual version is specified here, it will be checked against the version of the system compiler that was found +version = 'system' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb new file mode 100644 index 0000000000..7d50c98260 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb new file mode 100644 index 0000000000..a8be761c35 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb @@ -0,0 +1,14 @@ +easyblock = 'SystemMPI' + +name = 'OpenMPI' +# using 'system' as a version instructs the SystemMPI easyblock to derive the actual compiler version, +# and define $EBVERSION* accordingly (yet generate a module named /system); +# if an actual version is specified here, it will be checked against the version of the system MPI that was found +version = 'system' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI implementation.""" + +toolchain = {'name': 'GCC', 'version': 'system-2.27'} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb new file mode 100644 index 0000000000..7f3d83179e --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 3df50ebae50fcca270ce245c2bbb0c87586a542b Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Wed, 15 Feb 2017 13:59:39 +0200 Subject: [PATCH 007/845] Give system OpenMPI so we can create a new version with an updated binutils, add an associated gompi toolchain --- .../easyconfigs/g/gompi/gompi-system-2.27.eb | 21 +++++++++++++++++++ .../OpenMPI-system-GCC-system-2.27-2.27.eb | 16 ++++++++++++++ 2 files changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb diff --git a/easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb b/easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb new file mode 100644 index 0000000000..0208c2aedb --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = 'system' +versionsuffix = '-2.27' # binutils version + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '%s%s' % (version, versionsuffix) + +# compiler toolchain dependencies +dependencies = [ + ('GCC', gccver), # includes both GCC 5.4.0 and binutils 2.26 + ('OpenMPI', version, versionsuffix, ('GCC', gccver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb new file mode 100644 index 0000000000..0357fc3ca8 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb @@ -0,0 +1,16 @@ +easyblock = 'SystemMPI' + +name = 'OpenMPI' +# using 'system' as a version instructs the SystemMPI easyblock to derive the actual compiler version, +# and define $EBVERSION* accordingly (yet generate a module named /system); +# if an actual version is specified here, it will be checked against the version of the system MPI that was found +version = 'system' +versionsuffix = '-2.27' # binutils version + + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI implementation.""" + +toolchain = {'name': 'GCC', 'version': '%s%s' % (version, versionsuffix)} + +moduleclass = 'mpi' -- GitLab From 8382c8a9008fefa02f6d9ea860689ee884e9d789 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 15 Feb 2017 13:01:43 +0100 Subject: [PATCH 008/845] Delete OpenMPI-system-GCC-system-2.27.eb Need a way to update binutils here without having to overwrite existing easyconfig --- .../o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb | 14 -------------- 1 file changed, 14 deletions(-) delete mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb deleted file mode 100644 index a8be761c35..0000000000 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27.eb +++ /dev/null @@ -1,14 +0,0 @@ -easyblock = 'SystemMPI' - -name = 'OpenMPI' -# using 'system' as a version instructs the SystemMPI easyblock to derive the actual compiler version, -# and define $EBVERSION* accordingly (yet generate a module named /system); -# if an actual version is specified here, it will be checked against the version of the system MPI that was found -version = 'system' - -homepage = 'http://www.open-mpi.org/' -description = """The Open MPI Project is an open source MPI implementation.""" - -toolchain = {'name': 'GCC', 'version': 'system-2.27'} - -moduleclass = 'mpi' -- GitLab From 510c60afc45bc29ddbcea14993c8079ab00b2568 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Thu, 16 Feb 2017 16:48:43 +0200 Subject: [PATCH 009/845] Add a system iimpi toolchain --- .../i/icc/icc-system-GCC-system-2.27.eb | 22 +++++++++++++++++++ .../iccifort-system-GCC-system-2.27.eb | 18 +++++++++++++++ .../i/ifort/ifort-system-GCC-system-2.27.eb | 22 +++++++++++++++++++ .../i/iimpi/iimpi-system-GCC-system-2.27.eb | 18 +++++++++++++++ ...-system-iccifort-system-GCC-system-2.27.eb | 15 +++++++++++++ 5 files changed, 95 insertions(+) create mode 100644 easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb diff --git a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb new file mode 100644 index 0000000000..8b27589a3d --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb @@ -0,0 +1,22 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +easyblock = 'SystemCompiler' + +name = 'icc' +version = 'system' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = 'system' +binutilsver = '2.27' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb new file mode 100644 index 0000000000..039113b0ee --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb @@ -0,0 +1,18 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +easyblock = "Toolchain" + +name = 'iccifort' +version = 'system' +versionsuffix = '-GCC-system-2.27' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb new file mode 100644 index 0000000000..21bf18856a --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb @@ -0,0 +1,22 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +easyblock = 'SystemCompiler' + +name = 'ifort' +version = 'system' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = 'system' +binutilsver = '2.27' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb new file mode 100644 index 0000000000..fc69344700 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = 'system' +versionsuffix = '-GCC-system-2.27' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), + ('impi', version, '', ('iccifort', '%s%s' % (version, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb new file mode 100644 index 0000000000..0572992beb --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb @@ -0,0 +1,15 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +easyblock = 'SystemMPI' + +name = 'impi' +version = 'system' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': 'system-GCC-system-2.27'} + +moduleclass = 'mpi' -- GitLab From 255ca71287c7a8601a3a0f9ff59d767776318ce0 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Fri, 17 Feb 2017 13:29:51 +0200 Subject: [PATCH 010/845] Use new systemcompiler easyblock option --- easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb | 2 ++ easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb | 2 ++ easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb | 2 ++ 3 files changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb index b263ec656b..debfbaff88 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb @@ -20,4 +20,6 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +add_path_information = True + moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb index 8b27589a3d..83aa8a5945 100644 --- a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb @@ -10,6 +10,8 @@ description = "C and C++ compiler from Intel" toolchain = {'name': 'dummy', 'version': 'dummy'} +add_path_information = True + gccver = 'system' binutilsver = '2.27' versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) diff --git a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb index 21bf18856a..3cbae4aa65 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb @@ -10,6 +10,8 @@ description = "Fortran compiler from Intel" toolchain = {'name': 'dummy', 'version': 'dummy'} +add_path_information = True + gccver = 'system' binutilsver = '2.27' versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) -- GitLab From b2bbbc3fb505a5ab288ca8fbef7c0c844b98178f Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Fri, 17 Feb 2017 14:55:02 +0200 Subject: [PATCH 011/845] Added protection to easyblock for installations in /usr so can afford to be sloppy here --- .../o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb index 0357fc3ca8..5052063243 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb @@ -1,7 +1,7 @@ easyblock = 'SystemMPI' name = 'OpenMPI' -# using 'system' as a version instructs the SystemMPI easyblock to derive the actual compiler version, +# using 'system' as a version instructs the SystemMPI easyblock to derive the actual MPI version, # and define $EBVERSION* accordingly (yet generate a module named /system); # if an actual version is specified here, it will be checked against the version of the system MPI that was found version = 'system' @@ -13,4 +13,6 @@ description = """The Open MPI Project is an open source MPI implementation.""" toolchain = {'name': 'GCC', 'version': '%s%s' % (version, versionsuffix)} +add_path_information = True + moduleclass = 'mpi' -- GitLab From 00135add86e918ef5d56aba163768d5048f65d03 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Fri, 17 Feb 2017 15:37:06 +0200 Subject: [PATCH 012/845] Add path additions to impi --- .../i/impi/impi-system-iccifort-system-GCC-system-2.27.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb index 0572992beb..7a0b316fe9 100644 --- a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb @@ -12,4 +12,6 @@ description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric messag toolchain = {'name': 'iccifort', 'version': 'system-GCC-system-2.27'} +add_path_information = True + moduleclass = 'mpi' -- GitLab From b8cf6a254c6066c5bbee092a2133ad6117ff02cb Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Wed, 1 Mar 2017 20:48:23 +0200 Subject: [PATCH 013/845] Change variable name to generate standalone modules --- easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb | 2 +- easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb | 2 +- .../i/impi/impi-system-iccifort-system-GCC-system-2.27.eb | 2 +- .../o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb index debfbaff88..9a8f12df98 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb @@ -20,6 +20,6 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} -add_path_information = True +generate_standalone_module = True moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb index 83aa8a5945..1df9a98dfa 100644 --- a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb @@ -10,7 +10,7 @@ description = "C and C++ compiler from Intel" toolchain = {'name': 'dummy', 'version': 'dummy'} -add_path_information = True +generate_standalone_module = True gccver = 'system' binutilsver = '2.27' diff --git a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb index 3cbae4aa65..aca6742b38 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb @@ -10,7 +10,7 @@ description = "Fortran compiler from Intel" toolchain = {'name': 'dummy', 'version': 'dummy'} -add_path_information = True +generate_standalone_module = True gccver = 'system' binutilsver = '2.27' diff --git a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb index 7a0b316fe9..e9f5cf39ca 100644 --- a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb @@ -12,6 +12,6 @@ description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric messag toolchain = {'name': 'iccifort', 'version': 'system-GCC-system-2.27'} -add_path_information = True +generate_standalone_module = True moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb index 5052063243..46cf5ff1ef 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb @@ -13,6 +13,6 @@ description = """The Open MPI Project is an open source MPI implementation.""" toolchain = {'name': 'GCC', 'version': '%s%s' % (version, versionsuffix)} -add_path_information = True +generate_standalone_module = True moduleclass = 'mpi' -- GitLab From ee454a4d4305f08f04f7db64e5062d5b3d597a25 Mon Sep 17 00:00:00 2001 From: Ake Sandgren Date: Fri, 12 May 2017 21:00:25 +0200 Subject: [PATCH 014/845] Include patch to find NVML library on Ubuntu for Nvidia driver 367 and 375 --- .../GROMACS/GROMACS-2016.3-goolfc-2017.01.eb | 40 +++++++++++++++++++ ...ACS-2016.3_amend_search_for_nvml_lib.patch | 14 +++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb new file mode 100644 index 0000000000..24d9e0afe2 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# Authors:: +# * Wiktor Jurkowski +# * Fotis Georgatos +# * George Tsouloupas +# * Kenneth Hoste +# * Adam Huffman +# License:: MIT/GPL +## + +name = 'GROMACS' +version = '2016.3' + +homepage = 'http://www.gromacs.org' +description = """ +GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. + +This is a GPU enabled build, containing both MPI and threadMPI builds. +""" + +toolchain = {'name': 'goolfc', 'version': '2017.01'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'GROMACS-%(version)s_amend_search_for_nvml_lib.patch', +] + +builddependencies = [ + ('CMake', '3.7.1'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch new file mode 100644 index 0000000000..8ae9027f34 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch @@ -0,0 +1,14 @@ +# The NVML library location depends on driver version on Ubuntu +# Åke Sandgren, 2016-10-14 +diff -ru gromacs-2016.orig/cmake/FindNVML.cmake gromacs-2016/cmake/FindNVML.cmake +--- gromacs-2016.orig/cmake/FindNVML.cmake 2016-07-09 02:55:38.000000000 +0200 ++++ gromacs-2016/cmake/FindNVML.cmake 2016-10-14 21:44:08.143648879 +0200 +@@ -96,7 +96,7 @@ + # reasonably set GPU_DEPLOYMENT_KIT_ROOT_DIR to the value they + # passed to the installer, or the root where they later found the + # kit to be installed. Below, we cater for both possibilities. +- set( NVML_LIB_PATHS /usr/lib64 ) ++ set( NVML_LIB_PATHS /usr/lib64 /usr/lib/nvidia-367 /usr/lib/nvidia-375) + if(GPU_DEPLOYMENT_KIT_ROOT_DIR) + list(APPEND NVML_LIB_PATHS + "${GPU_DEPLOYMENT_KIT_ROOT_DIR}/src/gdk/nvml/lib" -- GitLab From 3a7a795c6e3c53d91051cf3aa6195aaec67cbcbf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 May 2017 14:52:01 +0200 Subject: [PATCH 015/845] adding easyconfigs: HPL-2.2-intel-2017.05.eb, intel-2017.05.eb, icc-2017.4.196-GCC-7.1.0-2.28.eb, ifort-2017.4.196-GCC-7.1.0-2.28.eb, impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb, imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb, iccifort-2017.4.196-GCC-7.1.0-2.28.eb, iimpi-2017.05-GCC-7.1.0-2.28.eb --- .../h/HPL/HPL-2.2-intel-2017.05.eb | 18 ++++++++++ .../i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb | 33 +++++++++++++++++ .../iccifort-2017.4.196-GCC-7.1.0-2.28.eb | 19 ++++++++++ .../ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb | 36 +++++++++++++++++++ .../i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb | 20 +++++++++++ ...2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb | 36 +++++++++++++++++++ ....196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb | 33 +++++++++++++++++ .../easyconfigs/i/intel/intel-2017.05.eb | 25 +++++++++++++ 8 files changed, 220 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb create mode 100644 easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/intel/intel-2017.05.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb new file mode 100644 index 0000000000..f649fc1c6c --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.2' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) + arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available + implementation of the High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2017.05'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb new file mode 100644 index 0000000000..75482e87cf --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb @@ -0,0 +1,33 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +name = 'icc' +version = '2017.4.196' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] + +checksums = ['6b9b57dada0ec68e394866ec0a8b162c9233de18a7a6dd2dcc956d335e06acbc'] + +gccver = '7.1.0' +binutilsver = '2.28' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-ccomp', 'intel-icc', 'intel-openmp', 'intel-ipsc?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb new file mode 100644 index 0000000000..20175f1539 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb @@ -0,0 +1,19 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +easyblock = 'Toolchain' + +name = 'iccifort' +version = '2017.4.196' +versionsuffix = '-GCC-7.1.0-2.28' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and + Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb new file mode 100644 index 0000000000..0ad62b89f5 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb @@ -0,0 +1,36 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +name = 'ifort' +version = '2017.4.196' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] + +checksums = ['0b6a222e015f776600b12b17c19506249c9e7691a8d287f44cd40a66ca9ac749'] + +# remove dependency on intel-mpi-rt-mic +patches = ['ifort_2017_no_mpi_mic_dependency.patch'] + +gccver = '7.1.0' +binutilsver = '2.28' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-fcomp', 'intel-ifort', 'intel-openmp', 'intel-ipsf?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb new file mode 100644 index 0000000000..ff25b839db --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb @@ -0,0 +1,20 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +easyblock = "Toolchain" + +name = 'iimpi' +version = '2017.05' +versionsuffix = '-GCC-7.1.0-2.28' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2017.4.196' +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '2017.3.196', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb new file mode 100644 index 0000000000..2793cfba56 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb @@ -0,0 +1,36 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +name = 'imkl' +version = '2017.3.196' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '2017.05-GCC-7.1.0-2.28'} + +sources = ['l_mkl_%(version)s.tgz'] +checksums = ['fd7295870fa164d6138c9818304f25f2bb263c814a6c6539c9fe4e104055f1ca'] + +dontcreateinstalldir = 'True' + +interfaces = True + +postinstallcmds = [ + # extract the examples + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', +] + +modextravars = { + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb new file mode 100644 index 0000000000..75d92e43ef --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb @@ -0,0 +1,33 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +name = 'impi' +version = '2017.3.196' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-7.1.0-2.28'} + +sources = ['l_mpi_%(version)s.tgz'] + +checksums = ['dad9efbc5bbd3fd27cce7e1e2507ad77f342d5ecc929747ae141c890e7fb87f0'] + +dontcreateinstalldir = 'True' + +components = ['intel-mpi', 'intel-psxe', 'intel-imb'] + +# set up all the mpi commands to default to intel compilers +# set_mpi_wrappers_all = 'True' + +postinstallcmds = [ + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpich.so', + 'ln -s %(installdir)s/lib64/libmpigc4.so %(installdir)s/lib64/libmpichcxx.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libfmpich.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libmpichf90.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpl.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libopa.so' +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2017.05.eb b/easybuild/easyconfigs/i/intel/intel-2017.05.eb new file mode 100644 index 0000000000..6e68b4ba70 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2017.05.eb @@ -0,0 +1,25 @@ +easyblock = 'Toolchain' + +name = 'intel' +version = '2017.05' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & + Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2017.4.196' +gccver = '7.1.0' +binutilsver = '2.28' +gccsuff = '-GCC-%s-%s' % (gccver, binutilsver) +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '-GCCcore-%s' % gccver), + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '2017.3.196', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '2017.3.196', '', ('iimpi', version + gccsuff)), +] + +moduleclass = 'toolchain' -- GitLab From 8260549ee21a50231a31746f4c3d53d4d71f1a36 Mon Sep 17 00:00:00 2001 From: Davide Vanzo Date: Mon, 22 May 2017 16:58:33 -0500 Subject: [PATCH 016/845] Added Rmpi patch file --- easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb | 2 +- easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb index 963e074572..dd1dc43ebf 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb @@ -77,7 +77,7 @@ exts_list = [ 'tools', 'utils', # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-6', ext_options), + ('Rmpi', '0.6-6', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), ('abind', '1.4-5', ext_options), ('magic', '1.5-6', ext_options), ('geometry', '0.3-6', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 949ed58bbb..2cde7eea73 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -77,7 +77,7 @@ exts_list = [ 'tools', 'utils', # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-6', ext_options), + ('Rmpi', '0.6-6', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), ('abind', '1.4-5', ext_options), ('magic', '1.5-6', ext_options), ('geometry', '0.3-6', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), -- GitLab From 02dd8d32e9b5b4deeb1f2641f51973d70ae687ac Mon Sep 17 00:00:00 2001 From: jrbosch Date: Fri, 26 May 2017 11:00:51 -0400 Subject: [PATCH 017/845] add easyconfig Biopython 1.68 for foss 2016b Python 3.5.2 --- .../Biopython-1.68-foss-2016b-Python-3.5.2.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb new file mode 100644 index 0000000000..82e737e6cf --- /dev/null +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , Thekla Loizou , +# George Tsouloupas +# License:: MIT/GPL +# +## +easyblock = 'PythonPackage' + +name = 'Biopython' +version = '1.68' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.biopython.org' +description = """Biopython is a set of freely available tools for biological computation written +in Python by an international team of developers. It is a distributed collaborative effort to +develop Python libraries and applications which address the needs of current and future work in +bioinformatics. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://biopython.org/DIST'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '3.5.2') +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] +} + +options = {'modulename': 'Bio'} + +moduleclass = 'bio' -- GitLab From ecdd4e4dfe5013664a6a7b7a33ca36f26f3a8c79 Mon Sep 17 00:00:00 2001 From: Robert Date: Wed, 31 May 2017 18:35:56 +0930 Subject: [PATCH 018/845] {bio}[foss/2016b] GroopM and deps --- .../b/BAMM/BAMM-2.5.0-foss-2016b.eb | 37 +++++++++++++ .../b/BWA/BWA-0.7.15-foss-2016b.eb | 26 +++++++++ .../BamM-1.7.3-foss-2016b-Python-2.7.13.eb | 38 +++++++++++++ .../Cython-0.25.2-foss-2016b-Python-2.7.13.eb | 36 ++++++++++++ .../GroopM-0.3.4-foss-2016b-Python-2.7.13.eb | 46 ++++++++++++++++ ...tplotlib-1.5.2-foss-2016b-Python-2.7.13.eb | 55 +++++++++++++++++++ .../PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb | 43 +++++++++++++++ ...PyTables-3.2.2-foss-2016b-Python-2.7.13.eb | 46 ++++++++++++++++ .../scipy-0.17.1-foss-2016b-Python-2.7.13.eb | 30 ++++++++++ 9 files changed, 357 insertions(+) create mode 100644 easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb create mode 100644 easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb create mode 100644 easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/p/PyTables/PyTables-3.2.2-foss-2016b-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb new file mode 100644 index 0000000000..67e73478f5 --- /dev/null +++ b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb @@ -0,0 +1,37 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: GPL-v3.0 +# +# Notes:: +## + +easyblock = 'CMakeMake' + +name = 'BAMM' +version = '2.5.0' + +homepage = 'http://bamm-project.org/' +description = """ BAMM is oriented entirely towards detecting and quantifying heterogeneity in evolutionary rates. +It uses reversible jump Markov chain Monte Carlo to automatically explore a vast universe of candidate models of +lineage diversification and trait evolution. """ + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/macroevolution/bamm/archive'] +sources = ['v%(version)s.tar.gz'] + +builddependencies = [ + ('CMake', '3.7.2'), +] + +sanity_check_paths = { + 'files': ['bin/bamm'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb new file mode 100644 index 0000000000..ceb6b4b6b3 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# Modified:: Robert Qiao @ adelaide.edu.au/phoenix +## + +name = 'BWA' +version = '0.7.15' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..c73686a30c --- /dev/null +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,38 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: GPL-v3.0 +# +# Notes:: +## + +easyblock = 'PythonPackage' + +name = 'BamM' +version = '1.7.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://ecogenomics.github.io/BamM/' +description = """ BamM is a c library, wrapped in python, that parses BAM files """ + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/Ecogenomics/BamM/archive'] +sources = ['%(version)s.tar.gz'] + +dependencies = [ + ('Python', '2.7.13'), + ('SAMtools', '1.3.1'), + ('BWA', '0.7.15'), +] + +sanity_check_paths = { + 'files': ['bin/bamm'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..07286ce8e2 --- /dev/null +++ b/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,36 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: Apache +# +# Notes:: +## + +easyblock = 'PythonPackage' + +name = 'Cython' +version = '0.25.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/Cython/' +description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. +Cython is a source code translator based on the well-known Pyrex, +but supports more cutting edge functionality and optimizations.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '2.7.13')] + +cythonlibdir = 'lib/python%(pyshortver)s/site-packages/Cython-%(version)s-py%(pyshortver)s-linux-x86_64.egg' +sanity_check_paths = { + 'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % cythonlibdir], + 'dirs': [cythonlibdir + '/%(name)s'] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..e52a60624a --- /dev/null +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,46 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +# Notes:: +### + +easyblock = 'PythonPackage' + +name = 'GroopM' +version = '0.3.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://ecogenomics.github.io/GroopM/' +description = """ GroopM is a metagenomic binning toolset. It leverages spatio-temoral +dynamics (differential coverage) to accurately (and almost automatically) +extract population genomes from multi-sample metagenomic datasets. +""" +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.13'), + ('Cython', '0.25.2', versionsuffix), + ('numpy', '1.11.1', versionsuffix), + ('scipy', '0.17.1', versionsuffix), + ('matplotlib', '1.5.2', versionsuffix), + ('Pysam', '0.10.0', versionsuffix), + ('PyTables', '3.2.2', versionsuffix), + ('PIL', '1.1.7', versionsuffix), + ('BamM', '1.7.3', versionsuffix), + ('GTK+', '2.24.31'), +] + +sanity_check_paths = { + 'files': ["bin/groopm"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..6e664a2059 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,55 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: Python Software Foundation (PSF) +# +# Notes:: +## + +easyblock = 'Bundle' + +name = 'matplotlib' +version = '1.5.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('freetype', '2.6.5'), + ('libpng', '1.6.24'), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..18f032a1ca --- /dev/null +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,43 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: Python Imaging Library License +# +# Notes:: +## + +easyblock = 'PythonPackage' + +name = 'PIL' +version = '1.1.7' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.pythonware.com/products/pil' +description = """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. + This library supports many file formats, and provides powerful image processing and graphics capabilities.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://effbot.org/downloads/'] +sources = ['Imaging-%(version)s.tar.gz'] + +patches = ['PIL-%(version)s-find-deps.patch'] + +dependencies = [ + ('zlib', '1.2.8'), + ('Python', '2.7.13'), + ('libjpeg-turbo', '1.5.0'), + ('freetype', '2.7'), +] + +options = {'modulename': 'PIL'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.2.2-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.2.2-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..2e0d15537e --- /dev/null +++ b/easybuild/easyconfigs/p/PyTables/PyTables-3.2.2-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,46 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: BSD +# +# Notes:: +## + +easyblock = 'PythonPackage' + +name = 'PyTables' +version = '3.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.pytables.org' +description = """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope + with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the + NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical + parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, + process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk + resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as + relational or object oriented databases.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/PyTables/PyTables/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('Python', '2.7.13'), + ('numexpr', '2.6.1', versionsuffix), + ('HDF5', '1.8.18'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['pt2to3', 'ptdump', 'ptrepack']], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +options = {'modulename': 'tables'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..9faa2de7a7 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,30 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: BSD-new +# +# Notes:: +## + +name = 'scipy' +version = '0.17.1' +versionsuffix = '-Python-2.7.13' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.11.1', versionsuffix), +] + +moduleclass = 'math' -- GitLab From ec8852a1a30776e009b35c378177c3ec52cb1558 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Wed, 31 May 2017 18:48:48 +0930 Subject: [PATCH 019/845] file name fixed --- ...ython-2.7.13.eb => PyTables-3.3.0-foss-2016b-Python-2.7.13.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/p/PyTables/{PyTables-3.2.2-foss-2016b-Python-2.7.13.eb => PyTables-3.3.0-foss-2016b-Python-2.7.13.eb} (100%) diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.2.2-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.13.eb similarity index 100% rename from easybuild/easyconfigs/p/PyTables/PyTables-3.2.2-foss-2016b-Python-2.7.13.eb rename to easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.13.eb -- GitLab From d4ab52de4b6d9bad913ca1ef39fb9b28d445f85a Mon Sep 17 00:00:00 2001 From: Robert Date: Wed, 31 May 2017 20:48:39 +0930 Subject: [PATCH 020/845] numpy added --- .../numpy-1.11.1-foss-2016b-Python-2.7.13.eb | 43 +++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb new file mode 100644 index 0000000000..6c272594db --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb @@ -0,0 +1,43 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: BSD-new +# +# Notes:: +## + +name = 'numpy' +version = '1.11.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +# patches = ['numpy-1.8.0-mkl.patch'] + +dependencies = [ + ('Python', '2.7.13'), +] + +# need to use pip rather than regular 'setup.py install' +# to ensure that this numpy wins over the one in the Python installation; +# using easy_install does not work... +use_pip = True + +# install as zipped egg to get a .pth file in lib/python*/site-packages; +# this enables shadowing of the numpy that is part of the Python installation +zipped_egg = True + +moduleclass = 'math' -- GitLab From d9b6a9c87e21756ed4d7aefa831f3818f87c099e Mon Sep 17 00:00:00 2001 From: Robert Date: Wed, 31 May 2017 21:34:13 +0930 Subject: [PATCH 021/845] SAMtools added --- .../numpy-1.11.1-foss-2016b-Python-2.7.13.eb | 2 -- .../s/SAMtools/SAMtools-1.3.1-foss-2016b.eb | 36 +++++++++++++++++++ 2 files changed, 36 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb index 6c272594db..90ade3ec90 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb @@ -25,8 +25,6 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] -# patches = ['numpy-1.8.0-mkl.patch'] - dependencies = [ ('Python', '2.7.13'), ] diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb new file mode 100644 index 0000000000..d688d2f69e --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# Modified by: Adam Huffman +# The Francis Crick Institute +## + +name = 'SAMtools' +version = '1.3.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +# Patch Makefile to link against zlib provided by EB +patches = ['SAMtools-%(version)s_Makefile.patch'] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.2'), +] + +moduleclass = 'bio' -- GitLab From 6dbb79f85a5fbfb784d6fca60b4536c15a0f2b68 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 1 Jun 2017 19:19:38 +0930 Subject: [PATCH 022/845] Pysam added --- .../Pysam-0.10.0-foss-2016b-Python-2.7.12.eb | 51 +++++++++++++++++++ 1 file changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..417ee652b8 --- /dev/null +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,51 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 0.9.1.4: +# Modified by: Robert Qiao , Exequiel Sepulveda +# @ adelaide.edu.au/phoenix + +easyblock = 'Bundle' + +name = 'Pysam' +version = '0.10.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pysam-developers/pysam' +description = """Pysam is a python module for reading and manipulating Samfiles. + It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +parallel = 1 + +dependencies = [ + ('Python', '2.7.12'), + ('Cython', '0.25.2', versionsuffix), + ('ncurses', '6.0'), + ('zlib', '1.2.8'), + ('cURL', '7.49.1'), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('pysam', version, { + 'source_tmpl': 'v%(version)s.tar.gz', + 'source_urls': ['https://github.com/pysam-developers/pysam/archive/'], + }), +] + +modextrapaths = { + 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'], +} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/pysam-%(version)s-py%(pyshortver)s-linux-x86_64.egg'], +} + +moduleclass = 'bio' -- GitLab From 490659514b75ccf3f42fdcdb6acd00f59ee2b638 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 1 Jun 2017 19:26:33 +0930 Subject: [PATCH 023/845] BamM Python ext updated --- ...-Python-2.7.13.eb => BamM-1.7.3-foss-2016b-Python-2.7.12.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/b/BamM/{BamM-1.7.3-foss-2016b-Python-2.7.13.eb => BamM-1.7.3-foss-2016b-Python-2.7.12.eb} (97%) diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb similarity index 97% rename from easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb rename to easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index c73686a30c..d0986b1904 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -25,7 +25,7 @@ source_urls = ['https://github.com/Ecogenomics/BamM/archive'] sources = ['%(version)s.tar.gz'] dependencies = [ - ('Python', '2.7.13'), + ('Python', '2.7.12'), ('SAMtools', '1.3.1'), ('BWA', '0.7.15'), ] -- GitLab From 43d135840ec9e931966918828c3a8120b93453e8 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Thu, 1 Jun 2017 19:27:43 +0930 Subject: [PATCH 024/845] Python ext updated --- ...Cython-0.25.2-foss-2016b-Python-2.7.12.eb} | 2 +- .../GroopM-0.3.4-foss-2016b-Python-2.7.13.eb | 4 +- .../numpy-1.11.1-foss-2016b-Python-2.7.13.eb | 41 ------------------- ... => PIL-1.1.7-foss-2016b-Python-2.7.12.eb} | 2 +- .../scipy-0.17.1-foss-2016b-Python-2.7.13.eb | 30 -------------- 5 files changed, 3 insertions(+), 76 deletions(-) rename easybuild/easyconfigs/c/Cython/{Cython-0.25.2-foss-2016b-Python-2.7.13.eb => Cython-0.25.2-foss-2016b-Python-2.7.12.eb} (96%) delete mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb rename easybuild/easyconfigs/p/PIL/{PIL-1.1.7-foss-2016b-Python-2.7.13.eb => PIL-1.1.7-foss-2016b-Python-2.7.12.eb} (97%) delete mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb similarity index 96% rename from easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb rename to easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb index 07286ce8e2..a99c8efcb6 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb @@ -25,7 +25,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -dependencies = [('Python', '2.7.13')] +dependencies = [('Python', '2.7.12')] cythonlibdir = 'lib/python%(pyshortver)s/site-packages/Cython-%(version)s-py%(pyshortver)s-linux-x86_64.egg' sanity_check_paths = { diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb index e52a60624a..ffa01c6372 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb @@ -28,9 +28,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('Python', '2.7.13'), ('Cython', '0.25.2', versionsuffix), - ('numpy', '1.11.1', versionsuffix), - ('scipy', '0.17.1', versionsuffix), - ('matplotlib', '1.5.2', versionsuffix), + ('matplotlib', '1.5.3', versionsuffix), ('Pysam', '0.10.0', versionsuffix), ('PyTables', '3.2.2', versionsuffix), ('PIL', '1.1.7', versionsuffix), diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb deleted file mode 100644 index 90ade3ec90..0000000000 --- a/easybuild/easyconfigs/n/numpy/numpy-1.11.1-foss-2016b-Python-2.7.13.eb +++ /dev/null @@ -1,41 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exequiel Sepulveda -# License:: BSD-new -# -# Notes:: -## - -name = 'numpy' -version = '1.11.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.numpy.org' -description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: - a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran - code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, - NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be - defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '2.7.13'), -] - -# need to use pip rather than regular 'setup.py install' -# to ensure that this numpy wins over the one in the Python installation; -# using easy_install does not work... -use_pip = True - -# install as zipped egg to get a .pth file in lib/python*/site-packages; -# this enables shadowing of the numpy that is part of the Python installation -zipped_egg = True - -moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb similarity index 97% rename from easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb rename to easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb index 18f032a1ca..92b0c0004e 100644 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb @@ -28,7 +28,7 @@ patches = ['PIL-%(version)s-find-deps.patch'] dependencies = [ ('zlib', '1.2.8'), - ('Python', '2.7.13'), + ('Python', '2.7.12'), ('libjpeg-turbo', '1.5.0'), ('freetype', '2.7'), ] diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb deleted file mode 100644 index 9faa2de7a7..0000000000 --- a/easybuild/easyconfigs/s/scipy/scipy-0.17.1-foss-2016b-Python-2.7.13.eb +++ /dev/null @@ -1,30 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exequiel Sepulveda -# License:: BSD-new -# -# Notes:: -## - -name = 'scipy' -version = '0.17.1' -versionsuffix = '-Python-2.7.13' - -homepage = 'http://www.scipy.org' -description = """SciPy is a collection of mathematical algorithms and convenience - functions built on the Numpy extension for Python.""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'usempi': True, 'pic': True} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('numpy', '1.11.1', versionsuffix), -] - -moduleclass = 'math' -- GitLab From 274d6e6cff6edc2a3635f460081e4b111c9c5d62 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 2 Jun 2017 13:33:45 +0930 Subject: [PATCH 025/845] GroopM deps version updated --- .../g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb index ffa01c6372..741c740418 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb @@ -26,7 +26,7 @@ source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] dependencies = [ - ('Python', '2.7.13'), + ('Python', '2.7.12'), ('Cython', '0.25.2', versionsuffix), ('matplotlib', '1.5.3', versionsuffix), ('Pysam', '0.10.0', versionsuffix), -- GitLab From 2076bf7ef017998e744925c083cdc3532a66478a Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 2 Jun 2017 13:52:22 +0930 Subject: [PATCH 026/845] GroopM version updated --- ...-Python-2.7.13.eb => GroopM-0.3.4-foss-2016b-Python-2.7.12.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/g/GroopM/{GroopM-0.3.4-foss-2016b-Python-2.7.13.eb => GroopM-0.3.4-foss-2016b-Python-2.7.12.eb} (100%) diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb similarity index 100% rename from easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.13.eb rename to easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb -- GitLab From effafc99eba76f252e9e681bf5315d93abc9eee1 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 2 Jun 2017 15:26:56 +0930 Subject: [PATCH 027/845] PyTable Python version updated --- ...hon-2.7.13.eb => PyTables-3.3.0-foss-2016b-Python-2.7.12.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/p/PyTables/{PyTables-3.3.0-foss-2016b-Python-2.7.13.eb => PyTables-3.3.0-foss-2016b-Python-2.7.12.eb} (98%) diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb similarity index 98% rename from easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.13.eb rename to easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb index 2e0d15537e..69afe0d8b8 100644 --- a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.13.eb +++ b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb @@ -31,7 +31,7 @@ source_urls = ['https://github.com/PyTables/PyTables/archive/'] sources = ['v%(version)s.tar.gz'] dependencies = [ - ('Python', '2.7.13'), + ('Python', '2.7.12'), ('numexpr', '2.6.1', versionsuffix), ('HDF5', '1.8.18'), ] -- GitLab From 9a666f09a553504a48b0172738ca06d5eae5a349 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 2 Jun 2017 15:29:21 +0930 Subject: [PATCH 028/845] deps version updated --- .../g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb index 741c740418..2b9c9abeb7 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb @@ -30,7 +30,7 @@ dependencies = [ ('Cython', '0.25.2', versionsuffix), ('matplotlib', '1.5.3', versionsuffix), ('Pysam', '0.10.0', versionsuffix), - ('PyTables', '3.2.2', versionsuffix), + ('PyTables', '3.3.0', versionsuffix), ('PIL', '1.1.7', versionsuffix), ('BamM', '1.7.3', versionsuffix), ('GTK+', '2.24.31'), -- GitLab From ea91b8526d698ea41601fcb15af7864f4dc778c6 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 2 Jun 2017 16:16:19 +0930 Subject: [PATCH 029/845] matplotlib1.5.2 removed --- ...tplotlib-1.5.2-foss-2016b-Python-2.7.13.eb | 55 ------------------- 1 file changed, 55 deletions(-) delete mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb deleted file mode 100644 index 6e664a2059..0000000000 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.2-foss-2016b-Python-2.7.13.eb +++ /dev/null @@ -1,55 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exequiel Sepulveda -# License:: Python Software Foundation (PSF) -# -# Notes:: -## - -easyblock = 'Bundle' - -name = 'matplotlib' -version = '1.5.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://matplotlib.org' -description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of - hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python - and ipython shell, web application servers, and six graphical user interface toolkits.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -# this is a bundle of Python packages -exts_defaultclass = 'PythonPackage' - -dependencies = [ - ('Python', '2.7.13'), - ('freetype', '2.6.5'), - ('libpng', '1.6.24'), -] - -exts_list = [ - ('Cycler', '0.10.0', { - 'modulename': 'cycler', - 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], - 'source_tmpl': 'cycler-%(version)s.tar.gz', - }), - (name, version, { - 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], - }), -] - -# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module -full_sanity_check = True - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -moduleclass = 'vis' -- GitLab From ad0296763fa7907b3f2c20fb4b3cd9de028b1466 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 2 Jun 2017 17:24:02 +0930 Subject: [PATCH 030/845] deps version updated --- .../g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb | 2 +- .../easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb index 2b9c9abeb7..508fa6454b 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb @@ -28,7 +28,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('Python', '2.7.12'), ('Cython', '0.25.2', versionsuffix), - ('matplotlib', '1.5.3', versionsuffix), + ('matplotlib', '1.5.2', versionsuffix), ('Pysam', '0.10.0', versionsuffix), ('PyTables', '3.3.0', versionsuffix), ('PIL', '1.1.7', versionsuffix), diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb index 92b0c0004e..447ed8f4a5 100644 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb @@ -30,7 +30,7 @@ dependencies = [ ('zlib', '1.2.8'), ('Python', '2.7.12'), ('libjpeg-turbo', '1.5.0'), - ('freetype', '2.7'), + ('freetype', '2.6.5'), ] options = {'modulename': 'PIL'} -- GitLab From e7cb3e9fbfc058009fe360524a1b6f4d61ba06cb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jun 2017 18:01:37 +0200 Subject: [PATCH 031/845] (proposal for) foss/2017b toolchain definition --- .../f/FFTW/FFTW-3.3.6-gompi-2017b.eb | 17 ++++++ easybuild/easyconfigs/f/foss/foss-2017b.eb | 35 ++++++++++++ easybuild/easyconfigs/g/gompi/gompi-2017b.eb | 20 +++++++ .../easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb | 18 ++++++ .../h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb | 24 ++++++++ ...BLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb | 56 +++++++++++++++++++ .../o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb | 34 +++++++++++ ...ompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb | 25 +++++++++ 8 files changed, 229 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb create mode 100644 easybuild/easyconfigs/f/foss/foss-2017b.eb create mode 100644 easybuild/easyconfigs/g/gompi/gompi-2017b.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb new file mode 100644 index 0000000000..eee27ec554 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb @@ -0,0 +1,17 @@ +name = 'FFTW' +version = '3.3.6' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = ['fftw-%(version)s-pl2.tar.gz'] +checksums = ['927e481edbb32575397eb3d62535a856'] + +runtest = 'check' + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/foss/foss-2017b.eb b/easybuild/easyconfigs/f/foss/foss-2017b.eb new file mode 100644 index 0000000000..20778cf402 --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2017b.eb @@ -0,0 +1,35 @@ +easyblock = 'Toolchain' + +name = 'foss' +version = '2017b' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '6.3.0-2.28' + +blaslib = 'OpenBLAS' +blasver = '0.2.19' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.7.0' + +# toolchain used to build foss dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc = (comp_mpi_tc_name, version) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds +dependencies = [ + ('GCC', gccver), + ('OpenMPI', '2.1.1', '', ('GCC', gccver)), + (blaslib, blasver, blassuff, ('GCC', gccver)), + ('FFTW', '3.3.6', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2017b.eb b/easybuild/easyconfigs/g/gompi/gompi-2017b.eb new file mode 100644 index 0000000000..ff56275f5c --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2017b.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2017b' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '6.3.0-2.28' + +# compiler toolchain dependencies +dependencies = [ + ('GCC', gccver), # includes both GCC 6.3.0 and binutils 2.27 + ('OpenMPI', '2.1.1', '', ('GCC', gccver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb new file mode 100644 index 0000000000..7ff64c1745 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.2' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) + arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available + implementation of the High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb new file mode 100644 index 0000000000..72dfa36917 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction +(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including +NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various +system attributes such as cache and memory information as well as the locality of I/O devices such as +network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering +information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.28'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] +checksums = ['ac16bed9cdd3c63bca1fe1ac3de522a1376b1487c4fc85b7b19592e28fd98e26'] + +dependencies = [('numactl', '2.0.11')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb new file mode 100644 index 0000000000..a1d7e75e79 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb @@ -0,0 +1,56 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.19' + +lapackver = '3.7.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.28'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' + +lapack_unpack_cmd = 'cd %(name)s-%(version)s; rm -rf lapack-netlib;' +lapack_unpack_cmd += 'mkdir lapack-netlib;' +lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' + +sources = [ + 'v%(version)s.tar.gz', + (lapack_src, lapack_unpack_cmd), + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (large_src, '.'), + (timing_src, '.'), + 'OpenBLAS-%(version)s_LAPACK-3.7.0-fixes.patch', +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +# runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb new file mode 100644 index 0000000000..aba86a17c1 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '2.1.1' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.28'} + +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'] + +dependencies = [('hwloc', '1.11.7')] + +configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': [], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb new file mode 100644 index 0000000000..a036bb79cb --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.19' +blassuff = '-LAPACK-3.7.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '6.3.0-2.28'))] + +# parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From c679889fdfab359099b7e2dc0ab2c4e34fa528ee Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 26 Jun 2017 19:04:17 +0200 Subject: [PATCH 032/845] rename intel/2017.05 to intel/2017b, stick to GCC 6.3.0 as a base --- ...HPL-2.2-intel-2017.05.eb => HPL-2.2-intel-2017b.eb} | 2 +- ...-7.1.0-2.28.eb => icc-2017.4.196-GCC-6.3.0-2.28.eb} | 2 +- ...0-2.28.eb => iccifort-2017.4.196-GCC-6.3.0-2.28.eb} | 2 +- ....1.0-2.28.eb => ifort-2017.4.196-GCC-6.3.0-2.28.eb} | 2 +- ...{iimpi-2017.05-GCC-7.1.0-2.28.eb => iimpi-2017b.eb} | 10 +++++----- ...CC-7.1.0-2.28.eb => imkl-2017.3.196-iimpi-2017b.eb} | 2 +- ...i-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb} | 2 +- .../i/intel/{intel-2017.05.eb => intel-2017b.eb} | 6 +++--- 8 files changed, 14 insertions(+), 14 deletions(-) rename easybuild/easyconfigs/h/HPL/{HPL-2.2-intel-2017.05.eb => HPL-2.2-intel-2017b.eb} (92%) rename easybuild/easyconfigs/i/icc/{icc-2017.4.196-GCC-7.1.0-2.28.eb => icc-2017.4.196-GCC-6.3.0-2.28.eb} (98%) rename easybuild/easyconfigs/i/iccifort/{iccifort-2017.4.196-GCC-7.1.0-2.28.eb => iccifort-2017.4.196-GCC-6.3.0-2.28.eb} (93%) rename easybuild/easyconfigs/i/ifort/{ifort-2017.4.196-GCC-7.1.0-2.28.eb => ifort-2017.4.196-GCC-6.3.0-2.28.eb} (98%) rename easybuild/easyconfigs/i/iimpi/{iimpi-2017.05-GCC-7.1.0-2.28.eb => iimpi-2017b.eb} (65%) rename easybuild/easyconfigs/i/imkl/{imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb => imkl-2017.3.196-iimpi-2017b.eb} (95%) rename easybuild/easyconfigs/i/impi/{impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb => impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb} (95%) rename easybuild/easyconfigs/i/intel/{intel-2017.05.eb => intel-2017b.eb} (86%) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb similarity index 92% rename from easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb index f649fc1c6c..32a513858c 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.05.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'intel', 'version': '2017.05'} +toolchain = {'name': 'intel', 'version': '2017b'} toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.3.0-2.28.eb similarity index 98% rename from easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb rename to easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.3.0-2.28.eb index 75482e87cf..c3b0319dcb 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-7.1.0-2.28.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.3.0-2.28.eb @@ -12,7 +12,7 @@ sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_compose checksums = ['6b9b57dada0ec68e394866ec0a8b162c9233de18a7a6dd2dcc956d335e06acbc'] -gccver = '7.1.0' +gccver = '6.3.0' binutilsver = '2.28' versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.3.0-2.28.eb similarity index 93% rename from easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb rename to easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.3.0-2.28.eb index 20175f1539..1fbc0afc0a 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-7.1.0-2.28.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.3.0-2.28.eb @@ -3,7 +3,7 @@ easyblock = 'Toolchain' name = 'iccifort' version = '2017.4.196' -versionsuffix = '-GCC-7.1.0-2.28' +versionsuffix = '-GCC-6.3.0-2.28' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.3.0-2.28.eb similarity index 98% rename from easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb rename to easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.3.0-2.28.eb index 0ad62b89f5..8f6eacf9f8 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-7.1.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.3.0-2.28.eb @@ -15,7 +15,7 @@ checksums = ['0b6a222e015f776600b12b17c19506249c9e7691a8d287f44cd40a66ca9ac749'] # remove dependency on intel-mpi-rt-mic patches = ['ifort_2017_no_mpi_mic_dependency.patch'] -gccver = '7.1.0' +gccver = '6.3.0' binutilsver = '2.28' versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb similarity index 65% rename from easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb rename to easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb index ff25b839db..8d59809f4c 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.05-GCC-7.1.0-2.28.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb @@ -2,8 +2,7 @@ easyblock = "Toolchain" name = 'iimpi' -version = '2017.05' -versionsuffix = '-GCC-7.1.0-2.28' +version = '2017b' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" @@ -11,10 +10,11 @@ description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2017.4.196' +suff = '-GCC-6.3.0-2.28' dependencies = [ - ('icc', compver, versionsuffix), - ('ifort', compver, versionsuffix), - ('impi', '2017.3.196', '', ('iccifort', '%s%s' % (compver, versionsuffix))), + ('icc', compver, suff), + ('ifort', compver, suff), + ('impi', '2017.3.196', '', ('iccifort', '%s%s' % (compver, suff))), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb similarity index 95% rename from easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb rename to easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb index 2793cfba56..4d773b67ad 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017.05-GCC-7.1.0-2.28.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb @@ -9,7 +9,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'iimpi', 'version': '2017.05-GCC-7.1.0-2.28'} +toolchain = {'name': 'iimpi', 'version': '2017b'} sources = ['l_mkl_%(version)s.tgz'] checksums = ['fd7295870fa164d6138c9818304f25f2bb263c814a6c6539c9fe4e104055f1ca'] diff --git a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb similarity index 95% rename from easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb rename to easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb index 75d92e43ef..473cd8b786 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-7.1.0-2.28.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb @@ -8,7 +8,7 @@ description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric messag passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" -toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-7.1.0-2.28'} +toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-6.3.0-2.28'} sources = ['l_mpi_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/intel/intel-2017.05.eb b/easybuild/easyconfigs/i/intel/intel-2017b.eb similarity index 86% rename from easybuild/easyconfigs/i/intel/intel-2017.05.eb rename to easybuild/easyconfigs/i/intel/intel-2017b.eb index 6e68b4ba70..aecf829181 100644 --- a/easybuild/easyconfigs/i/intel/intel-2017.05.eb +++ b/easybuild/easyconfigs/i/intel/intel-2017b.eb @@ -1,7 +1,7 @@ easyblock = 'Toolchain' name = 'intel' -version = '2017.05' +version = '2017b' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & @@ -10,7 +10,7 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2017.4.196' -gccver = '7.1.0' +gccver = '6.3.0' binutilsver = '2.28' gccsuff = '-GCC-%s-%s' % (gccver, binutilsver) dependencies = [ @@ -19,7 +19,7 @@ dependencies = [ ('icc', compver, gccsuff), ('ifort', compver, gccsuff), ('impi', '2017.3.196', '', ('iccifort', '%s%s' % (compver, gccsuff))), - ('imkl', '2017.3.196', '', ('iimpi', version + gccsuff)), + ('imkl', '2017.3.196', '', ('iimpi', version)), ] moduleclass = 'toolchain' -- GitLab From 6b46855e1cf91182be3ba1cbd805ef75585a7bb4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 28 Jun 2017 13:17:30 +0200 Subject: [PATCH 033/845] bump GCC to 6.4.0 for foss/2017b --- easybuild/easyconfigs/f/foss/foss-2017b.eb | 2 +- easybuild/easyconfigs/g/gompi/gompi-2017b.eb | 4 ++-- ...2.28.eb => hwloc-1.11.7-GCC-6.4.0-2.28.eb} | 2 +- .../numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb | 23 +++++++++++++++++++ ...LAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb} | 2 +- ....28.eb => OpenMPI-2.1.1-GCC-6.4.0-2.28.eb} | 2 +- ...ompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb | 2 +- 7 files changed, 30 insertions(+), 7 deletions(-) rename easybuild/easyconfigs/h/hwloc/{hwloc-1.11.7-GCC-6.3.0-2.28.eb => hwloc-1.11.7-GCC-6.4.0-2.28.eb} (95%) create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb rename easybuild/easyconfigs/o/OpenBLAS/{OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb => OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb} (96%) rename easybuild/easyconfigs/o/OpenMPI/{OpenMPI-2.1.1-GCC-6.3.0-2.28.eb => OpenMPI-2.1.1-GCC-6.4.0-2.28.eb} (95%) diff --git a/easybuild/easyconfigs/f/foss/foss-2017b.eb b/easybuild/easyconfigs/f/foss/foss-2017b.eb index 20778cf402..5ce20b722f 100644 --- a/easybuild/easyconfigs/f/foss/foss-2017b.eb +++ b/easybuild/easyconfigs/f/foss/foss-2017b.eb @@ -9,7 +9,7 @@ description = """GNU Compiler Collection (GCC) based compiler toolchain, includi toolchain = {'name': 'dummy', 'version': 'dummy'} -gccver = '6.3.0-2.28' +gccver = '6.4.0-2.28' blaslib = 'OpenBLAS' blasver = '0.2.19' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2017b.eb b/easybuild/easyconfigs/g/gompi/gompi-2017b.eb index ff56275f5c..acba6f51d9 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-2017b.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-2017b.eb @@ -9,11 +9,11 @@ description = """GNU Compiler Collection (GCC) based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -gccver = '6.3.0-2.28' +gccver = '6.4.0-2.28' # compiler toolchain dependencies dependencies = [ - ('GCC', gccver), # includes both GCC 6.3.0 and binutils 2.27 + ('GCC', gccver), # includes both GCC and binutils ('OpenMPI', '2.1.1', '', ('GCC', gccver)), ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb similarity index 95% rename from easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb rename to easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb index 72dfa36917..b5be4b59bc 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb @@ -11,7 +11,7 @@ system attributes such as cache and memory information as well as the locality o network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.""" -toolchain = {'name': 'GCC', 'version': '6.3.0-2.28'} +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..521df8ded9 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb similarity index 96% rename from easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb rename to easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb index a1d7e75e79..21faaaf7ab 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.28-LAPACK-3.7.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb @@ -9,7 +9,7 @@ versionsuffix = '-LAPACK-%s' % lapackver homepage = 'http://xianyi.github.com/OpenBLAS/' description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" -toolchain = {'name': 'GCC', 'version': '6.3.0-2.28'} +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} lapack_src = 'lapack-%s.tgz' % lapackver large_src = 'large.tgz' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb similarity index 95% rename from easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb rename to easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb index aba86a17c1..c55bade938 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb @@ -6,7 +6,7 @@ version = '2.1.1' homepage = 'http://www.open-mpi.org/' description = """The Open MPI Project is an open source MPI-2 implementation.""" -toolchain = {'name': 'GCC', 'version': '6.3.0-2.28'} +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb index a036bb79cb..84d34e0f8a 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb @@ -17,7 +17,7 @@ blassuff = '-LAPACK-3.7.0' versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) -dependencies = [(blaslib, blasver, blassuff, ('GCC', '6.3.0-2.28'))] +dependencies = [(blaslib, blasver, blassuff, ('GCC', '6.4.0-2.28'))] # parallel build tends to fail, so disabling it parallel = 1 -- GitLab From 46ef26e8beed7864b850b7a25969f4d32e4c2fad Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 28 Jun 2017 17:04:50 +0200 Subject: [PATCH 034/845] GCC 6.4.0 + binutils 2.28 (base for */2017b toolchains) [WIP] --- .../b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb | 28 ++++++++++ .../b/binutils/binutils-2.28-GCCcore-6.4.0.eb | 21 +++++++ .../f/flex/flex-2.6.4-GCCcore-6.4.0.eb | 24 ++++++++ easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb | 25 +++++++++ .../easyconfigs/g/GCCcore/GCCcore-6.4.0.eb | 56 +++++++++++++++++++ .../help2man/help2man-1.47.4-GCCcore-6.4.0.eb | 25 +++++++++ .../m/M4/M4-1.4.18-GCCcore-6.4.0.eb | 29 ++++++++++ .../z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb | 26 +++++++++ 8 files changed, 234 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..2623578bc5 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] + +builddependencies = [ + ('M4', '1.4.18'), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.28', '', True), +] + + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..b22b7d16ba --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb @@ -0,0 +1,21 @@ +name = 'binutils' +version = '2.28' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), + # use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils + ('binutils', version, '', True) +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..55845823d8 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] + +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +dependencies = [('M4', '1.4.18')] +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.28', '', True), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..6d830c0286 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb @@ -0,0 +1,25 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = '6.4.0' + +binutilsver = '2.28' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore, which was built on top of (dummy-built) binutils + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9dbb7d3700 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb @@ -0,0 +1,56 @@ +easyblock = 'EB_GCC' + +name = 'GCCcore' +version = '6.4.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.5' + +source_urls = [ + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies + 'http://isl.gforge.inria.fr/', # original HTTP source for ISL +] + +sources = [ + 'gcc-%(version)s-RC-20170628.tar.gz', # FIXME 'gcc-%(version)s.tar.bz2', + 'gmp-6.1.2.tar.bz2', + 'mpfr-%s.tar.bz2' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.16.1.tar.bz2', +] + +builddependencies = [ + ('M4', '1.4.18'), + ('binutils', '2.28'), +] + +patches = [ + ('mpfr-%s-allpatches-20170606.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), + 'GCCcore-6.2.0-fix-find-isl.patch', +] + +checksums = [ + '005e58fb723efb3bf51dac5db8a5edf7c66ea2e7ddb6de6ed02dbb74fcc31f80', # gcc-6.4.0.tar.bz2 + '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 + 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.gz + '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz + '412538bb65c799ac98e17e8cfcdacbb257a57362acfaaff254b0fcae970126d2', # isl-0.16.1.tar.bz2 + '137108952139486755e8c1bee30314ffa9233cc05cddfd848aa85503a6fea9d7', # mpfr-3.1.5-allpatches-20170606.patch + '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68', # GCCcore-6.2.0-fix-find-isl.patch +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..192cdb14fe --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.4' + +homepage = 'https://www.gnu.org/software/help2man/' +description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] + +builddependencies = [ + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.28', '', True), +] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..2a832cbb83 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.28', '', True)] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..a520a02364 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://zlib.net/fossils'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.28', '', True)] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 72064f85e6399f8c905b70301fd8f0cf0bf5b050 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 28 Jun 2017 17:11:17 +0200 Subject: [PATCH 035/845] bump to GCC 6.4.0 as base for intel/2017b --- ...4.196-GCC-6.3.0-2.28.eb => icc-2017.4.196-GCC-6.4.0-2.28.eb} | 2 +- ...-GCC-6.3.0-2.28.eb => iccifort-2017.4.196-GCC-6.4.0-2.28.eb} | 2 +- ...196-GCC-6.3.0-2.28.eb => ifort-2017.4.196-GCC-6.4.0-2.28.eb} | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb | 2 +- ...eb => impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb} | 2 +- easybuild/easyconfigs/i/intel/intel-2017b.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) rename easybuild/easyconfigs/i/icc/{icc-2017.4.196-GCC-6.3.0-2.28.eb => icc-2017.4.196-GCC-6.4.0-2.28.eb} (98%) rename easybuild/easyconfigs/i/iccifort/{iccifort-2017.4.196-GCC-6.3.0-2.28.eb => iccifort-2017.4.196-GCC-6.4.0-2.28.eb} (93%) rename easybuild/easyconfigs/i/ifort/{ifort-2017.4.196-GCC-6.3.0-2.28.eb => ifort-2017.4.196-GCC-6.4.0-2.28.eb} (98%) rename easybuild/easyconfigs/i/impi/{impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb => impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb} (95%) diff --git a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb similarity index 98% rename from easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.3.0-2.28.eb rename to easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb index c3b0319dcb..05acc34697 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb @@ -12,7 +12,7 @@ sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_compose checksums = ['6b9b57dada0ec68e394866ec0a8b162c9233de18a7a6dd2dcc956d335e06acbc'] -gccver = '6.3.0' +gccver = '6.4.0' binutilsver = '2.28' versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb similarity index 93% rename from easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.3.0-2.28.eb rename to easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb index 1fbc0afc0a..a3c7d6585e 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -3,7 +3,7 @@ easyblock = 'Toolchain' name = 'iccifort' version = '2017.4.196' -versionsuffix = '-GCC-6.3.0-2.28' +versionsuffix = '-GCC-6.4.0-2.28' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb similarity index 98% rename from easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.3.0-2.28.eb rename to easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb index 8f6eacf9f8..b3b151820c 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -15,7 +15,7 @@ checksums = ['0b6a222e015f776600b12b17c19506249c9e7691a8d287f44cd40a66ca9ac749'] # remove dependency on intel-mpi-rt-mic patches = ['ifort_2017_no_mpi_mic_dependency.patch'] -gccver = '6.3.0' +gccver = '6.4.0' binutilsver = '2.28' versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb index 8d59809f4c..53c7c29886 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb @@ -10,7 +10,7 @@ description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2017.4.196' -suff = '-GCC-6.3.0-2.28' +suff = '-GCC-6.4.0-2.28' dependencies = [ ('icc', compver, suff), ('ifort', compver, suff), diff --git a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb similarity index 95% rename from easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb rename to easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb index 473cd8b786..2e46f8a579 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -8,7 +8,7 @@ description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric messag passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" -toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-6.3.0-2.28'} +toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-6.4.0-2.28'} sources = ['l_mpi_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/intel/intel-2017b.eb b/easybuild/easyconfigs/i/intel/intel-2017b.eb index aecf829181..79c32a59cd 100644 --- a/easybuild/easyconfigs/i/intel/intel-2017b.eb +++ b/easybuild/easyconfigs/i/intel/intel-2017b.eb @@ -10,7 +10,7 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2017.4.196' -gccver = '6.3.0' +gccver = '6.4.0' binutilsver = '2.28' gccsuff = '-GCC-%s-%s' % (gccver, binutilsver) dependencies = [ -- GitLab From 8c470ec536ff0550061cda52e48e119b6be97d6f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 28 Jun 2017 17:18:31 +0200 Subject: [PATCH 036/845] add missing MPFR patch used in GCCcore 6.4.0 easyconfig --- .../mpfr-3.1.5-allpatches-20170606.patch | 689 ++++++++++++++++++ 1 file changed, 689 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch diff --git a/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch new file mode 100644 index 0000000000..f25a39e542 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch @@ -0,0 +1,689 @@ +# MPFR v3.1.5 patch dated 2017-06-06 +# downloaded via https://gforge.inria.fr/frs/?group_id=136 +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-15 08:35:46.476430238 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-15 08:35:46.544430346 +0000 +@@ -0,0 +1 @@ ++vasprintf +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-15 08:35:46.544430346 +0000 +@@ -1 +1 @@ +-3.1.5 ++3.1.5-p1 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5" ++#define MPFR_VERSION_STRING "3.1.5-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1593,7 +1593,7 @@ + } + else if (spec.spec == 'f' || spec.spec == 'F') + { +- if (spec.prec == -1) ++ if (spec.prec < 0) + spec.prec = 6; + if (regular_fg (np, p, spec, NULL) == -1) + goto error; +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-15 08:35:46.544430346 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5"; ++ return "3.1.5-p1"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1251,6 +1251,25 @@ + check_emin_aux (MPFR_EMIN_MIN); + } + ++static void ++test20161214 (void) ++{ ++ mpfr_t x; ++ char buf[32]; ++ const char s[] = "0x0.fffffffffffff8p+1024"; ++ int r; ++ ++ mpfr_init2 (x, 64); ++ mpfr_set_str (x, s, 16, MPFR_RNDN); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", -2, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN + 1, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN, x); ++ MPFR_ASSERTN(r == 316); ++ mpfr_clear (x); ++} ++ + int + main (int argc, char **argv) + { +@@ -1271,6 +1290,7 @@ + mixed (); + check_emax (); + check_emin (); ++ test20161214 (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + #if MPFR_LCONV_DPTS +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-19 22:11:17.022676737 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-19 22:11:17.094676820 +0000 +@@ -0,0 +1 @@ ++strtofr +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-19 22:11:17.094676820 +0000 +@@ -1 +1 @@ +-3.1.5-p1 ++3.1.5-p2 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p1" ++#define MPFR_VERSION_STRING "3.1.5-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/strtofr.c mpfr-3.1.5-b/src/strtofr.c +--- mpfr-3.1.5-a/src/strtofr.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/strtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -743,11 +743,14 @@ + of the pstr_size most significant digits of pstr->mant, with + equality in case exact is non-zero. */ + +- /* test if rounding is possible, and if so exit the loop */ +- if (exact || mpfr_can_round_raw (result, ysize, +- (pstr->negative) ? -1 : 1, +- ysize_bits - err - 1, +- MPFR_RNDN, rnd, MPFR_PREC(x))) ++ /* test if rounding is possible, and if so exit the loop. ++ Note: we also need to be able to determine the correct ternary value, ++ thus we use the MPFR_PREC(x) + (rnd == MPFR_RNDN) trick. ++ For example if result = xxx...xxx111...111 and rnd = RNDN, ++ then we know the correct rounding is xxx...xx(x+1), but we cannot know ++ the correct ternary value. */ ++ if (exact || mpfr_round_p (result, ysize, ysize_bits - err - 1, ++ MPFR_PREC(x) + (rnd == MPFR_RNDN))) + break; + + next_loop: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-19 22:11:17.094676820 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p1"; ++ return "3.1.5-p2"; + } +diff -Naurd mpfr-3.1.5-a/tests/tstrtofr.c mpfr-3.1.5-b/tests/tstrtofr.c +--- mpfr-3.1.5-a/tests/tstrtofr.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tstrtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -1191,6 +1191,24 @@ + mpfr_clears (e, x1, x2, (mpfr_ptr) 0); + } + ++/* Note: the number is 5^47/2^9. */ ++static void ++bug20161217 (void) ++{ ++ mpfr_t fp, z; ++ static const char * num = "0.1387778780781445675529539585113525390625e31"; ++ int inex; ++ ++ mpfr_init2 (fp, 110); ++ mpfr_init2 (z, 110); ++ inex = mpfr_strtofr (fp, num, NULL, 10, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ mpfr_set_str_binary (z, "10001100001000010011110110011101101001010000001011011110010001010100010100100110111101000010001011001100001101E-9"); ++ MPFR_ASSERTN(mpfr_equal_p (fp, z)); ++ mpfr_clear (fp); ++ mpfr_clear (z); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -1205,6 +1223,7 @@ + test20100310 (); + bug20120814 (); + bug20120829 (); ++ bug20161217 (); + + tests_end_mpfr (); + return 0; +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:21:17.580843571 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:21:17.604843293 +0000 +@@ -0,0 +1 @@ ++ret-macro +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:21:17.604843293 +0000 +@@ -1 +1 @@ +-3.1.5-p2 ++3.1.5-p3 +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 +@@ -873,7 +873,7 @@ + following two macros, unless the flag comes from another function + returning the ternary inexact value */ + #define MPFR_RET(I) return \ +- (I) ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 ++ (I) != 0 ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 + #define MPFR_RET_NAN return (__gmpfr_flags |= MPFR_FLAGS_NAN), 0 + + #define MPFR_SET_ERANGE() (__gmpfr_flags |= MPFR_FLAGS_ERANGE) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p2" ++#define MPFR_VERSION_STRING "3.1.5-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:21:17.604843293 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p2"; ++ return "3.1.5-p3"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:50:30.708438500 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:50:30.736438175 +0000 +@@ -0,0 +1 @@ ++tests-buffer-size +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:50:30.736438175 +0000 +@@ -1 +1 @@ +-3.1.5-p3 ++3.1.5-p4 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p3" ++#define MPFR_VERSION_STRING "3.1.5-p4" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:50:30.736438175 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p3"; ++ return "3.1.5-p4"; + } +diff -Naurd mpfr-3.1.5-a/tests/tl2b.c mpfr-3.1.5-b/tests/tl2b.c +--- mpfr-3.1.5-a/tests/tl2b.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tl2b.c 2017-06-06 19:50:30.724438314 +0000 +@@ -83,7 +83,7 @@ + mpfr_srcptr t; + int beta, i; + int error = 0; +- char buffer[30]; ++ char buffer[256]; /* larger than needed, for maintainability */ + + for (beta = 2; beta <= BASE_MAX; beta++) + { +diff -Naurd mpfr-3.1.5-a/tests/tpow_all.c mpfr-3.1.5-b/tests/tpow_all.c +--- mpfr-3.1.5-a/tests/tpow_all.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tpow_all.c 2017-06-06 19:50:30.724438314 +0000 +@@ -498,7 +498,7 @@ + for (i = 0; i <= 12; i++) + { + unsigned int flags = 0; +- char sy[16]; ++ char sy[256]; /* larger than needed, for maintainability */ + + /* Test 2^(emin - i/4). + * --> Underflow iff i > 4. +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:57:01.947910247 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:57:01.971909970 +0000 +@@ -0,0 +1 @@ ++vasprintf-overflow-check +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:57:01.971909970 +0000 +@@ -1 +1 @@ +-3.1.5-p4 ++3.1.5-p5 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p4" ++#define MPFR_VERSION_STRING "3.1.5-p5" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 +@@ -1452,7 +1452,7 @@ + struct printf_spec spec) + { + char *str; +- long total; ++ unsigned int total; /* can hold the sum of two non-negative int's + 1 */ + int uppercase; + + /* WARNING: left justification means right space padding */ +@@ -1645,43 +1645,43 @@ + + /* compute the number of characters to be written verifying it is not too + much */ ++ ++#define INCR_TOTAL(v) \ ++ do { \ ++ MPFR_ASSERTD ((v) >= 0); \ ++ if (MPFR_UNLIKELY ((v) > INT_MAX)) \ ++ goto error; \ ++ total += (v); \ ++ if (MPFR_UNLIKELY (total > INT_MAX)) \ ++ goto error; \ ++ } while (0) ++ + total = np->sign ? 1 : 0; +- total += np->prefix_size; +- total += np->ip_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->ip_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->prefix_size); ++ INCR_TOTAL (np->ip_size); ++ INCR_TOTAL (np->ip_trailing_zeros); ++ MPFR_ASSERTD (np->ip_size + np->ip_trailing_zeros >= 1); + if (np->thousands_sep) + /* ' flag, style f and the thousands separator in current locale is not + reduced to the null character */ +- total += (np->ip_size + np->ip_trailing_zeros) / 3; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL ((np->ip_size + np->ip_trailing_zeros - 1) / 3); + if (np->point) + ++total; +- total += np->fp_leading_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->exp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->fp_leading_zeros); ++ INCR_TOTAL (np->fp_size); ++ INCR_TOTAL (np->fp_trailing_zeros); ++ INCR_TOTAL (np->exp_size); + + if (spec.width > total) + /* pad with spaces or zeros depending on np->pad_type */ + { + np->pad_size = spec.width - total; + total += np->pad_size; /* here total == spec.width, +- so 0 < total < INT_MAX */ ++ so 0 < total <= INT_MAX */ ++ MPFR_ASSERTD (total == spec.width); + } + ++ MPFR_ASSERTD (total > 0 && total <= INT_MAX); + return total; + + error: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:57:01.971909970 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p4"; ++ return "3.1.5-p5"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:17:02.489704106 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:17:02.513703814 +0000 +@@ -0,0 +1 @@ ++printf-errno +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:17:02.513703814 +0000 +@@ -1 +1 @@ +-3.1.5-p5 ++3.1.5-p6 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p5" ++#define MPFR_VERSION_STRING "3.1.5-p6" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/printf.c mpfr-3.1.5-b/src/printf.c +--- mpfr-3.1.5-a/src/printf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/printf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -40,7 +40,6 @@ + # endif /* HAVE___VA_COPY */ + #endif /* HAVE_VA_COPY */ + +-#include + #include "mpfr-impl.h" + + #ifdef _MPFR_H_HAVE_FILE +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -52,6 +52,8 @@ + #include /* for ptrdiff_t */ + #endif + ++#include ++ + #define MPFR_NEED_LONGLONG_H + #include "mpfr-intmax.h" + #include "mpfr-impl.h" +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:17:02.513703814 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p5"; ++ return "3.1.5-p6"; + } +diff -Naurd mpfr-3.1.5-a/tests/tprintf.c mpfr-3.1.5-b/tests/tprintf.c +--- mpfr-3.1.5-a/tests/tprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -26,6 +26,7 @@ + #include + #include + #include ++#include + + #include "mpfr-intmax.h" + #include "mpfr-test.h" +@@ -109,6 +110,33 @@ + } + + static void ++check_vprintf_overflow (const char *fmt, ...) ++{ ++ va_list ap; ++ int r, e; ++ ++ va_start (ap, fmt); ++ errno = 0; ++ r = mpfr_vprintf (fmt, ap); ++ e = errno; ++ va_end (ap); ++ ++ if (r != -1 ++#ifdef EOVERFLOW ++ || e != EOVERFLOW ++#endif ++ ) ++ { ++ putchar ('\n'); ++ fprintf (stderr, "Error in mpfr_vprintf(\"%s\", ...)\n" ++ "Got r = %d, errno = %d\n", fmt, r, e); ++ exit (1); ++ } ++ ++ putchar ('\n'); ++} ++ ++static void + check_invalid_format (void) + { + int i = 0; +@@ -167,8 +195,8 @@ + mpfr_set_ui (x, 1, MPFR_RNDN); + mpfr_nextabove (x); + +- check_vprintf_failure ("%Rb", x); +- check_vprintf_failure ("%RA %RA %Ra %Ra", x, x, x, x); ++ check_vprintf_overflow ("%Rb", x); ++ check_vprintf_overflow ("%RA %RA %Ra %Ra", x, x, x, x); + + mpfr_clear (x); + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:24:00.580702002 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:24:00.604701719 +0000 +@@ -0,0 +1 @@ ++tsprintf-setlocale +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:24:00.604701719 +0000 +@@ -1 +1 @@ +-3.1.5-p6 ++3.1.5-p7 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p6" ++#define MPFR_VERSION_STRING "3.1.5-p7" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:24:00.604701719 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p6"; ++ return "3.1.5-p7"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2017-06-06 20:24:00.596701813 +0000 +@@ -1273,13 +1273,12 @@ + int + main (int argc, char **argv) + { +- char *locale; + + tests_start_mpfr (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + /* currently, we just check with 'C' locale */ +- locale = setlocale (LC_ALL, "C"); ++ setlocale (LC_ALL, "C"); + #endif + + bug20111102 (); +@@ -1297,7 +1296,7 @@ + locale_da_DK (); + /* Avoid a warning by doing the setlocale outside of this #if */ + #endif +- setlocale (LC_ALL, locale); ++ setlocale (LC_ALL, "C"); + #endif + + if (getenv ("MPFR_CHECK_LIBC_PRINTF")) +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:31:35.919341495 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:31:35.943341213 +0000 +@@ -0,0 +1 @@ ++mpf-compat-signed +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:31:35.943341213 +0000 +@@ -1 +1 @@ +-3.1.5-p7 ++3.1.5-p8 +diff -Naurd mpfr-3.1.5-a/src/mpf2mpfr.h mpfr-3.1.5-b/src/mpf2mpfr.h +--- mpfr-3.1.5-a/src/mpf2mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpf2mpfr.h 2017-06-06 20:31:35.931341353 +0000 +@@ -93,15 +93,15 @@ + #undef mpf_div_2exp + #define mpf_div_2exp(x,y,z) mpfr_div_2exp(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_fits_slong_p +-#define mpf_fits_slong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_slong_p(x) mpfr_fits_slong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ulong_p + #define mpf_fits_ulong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sint_p +-#define mpf_fits_sint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sint_p(x) mpfr_fits_sint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_uint_p + #define mpf_fits_uint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sshort_p +-#define mpf_fits_sshort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sshort_p(x) mpfr_fits_sshort_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ushort_p + #define mpf_fits_ushort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) + #undef mpf_get_str +@@ -113,7 +113,7 @@ + #undef mpf_get_ui + #define mpf_get_ui(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) + #undef mpf_get_si +-#define mpf_get_si(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) ++#define mpf_get_si(x) mpfr_get_si(x,MPFR_DEFAULT_RND) + #undef mpf_inp_str + #define mpf_inp_str(x,y,z) mpfr_inp_str(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_set_str +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 20:31:35.931341353 +0000 +@@ -342,11 +342,15 @@ + #define MPFR_FLAGS_DIVBY0 32 + #define MPFR_FLAGS_ALL 63 + +-/* Replace some common functions for direct access to the global vars */ +-#define mpfr_get_emin() (__gmpfr_emin + 0) +-#define mpfr_get_emax() (__gmpfr_emax + 0) +-#define mpfr_get_default_rounding_mode() (__gmpfr_default_rounding_mode + 0) +-#define mpfr_get_default_prec() (__gmpfr_default_fp_bit_precision + 0) ++/* Replace some common functions for direct access to the global vars. ++ The casts prevent these macros from being used as a lvalue (and this ++ method makes sure that the expressions have the correct type). */ ++#define mpfr_get_emin() ((mpfr_exp_t) __gmpfr_emin) ++#define mpfr_get_emax() ((mpfr_exp_t) __gmpfr_emax) ++#define mpfr_get_default_rounding_mode() \ ++ ((mpfr_rnd_t) __gmpfr_default_rounding_mode) ++#define mpfr_get_default_prec() \ ++ ((mpfr_prec_t) __gmpfr_default_fp_bit_precision) + + #define mpfr_clear_flags() \ + ((void) (__gmpfr_flags = 0)) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:31:35.939341259 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p7" ++#define MPFR_VERSION_STRING "3.1.5-p8" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:31:35.943341213 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p7"; ++ return "3.1.5-p8"; + } +diff -Naurd mpfr-3.1.5-a/tests/mpf_compat.h mpfr-3.1.5-b/tests/mpf_compat.h +--- mpfr-3.1.5-a/tests/mpf_compat.h 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/mpf_compat.h 2017-06-06 20:31:35.931341353 +0000 +@@ -20,16 +20,10 @@ + http://www.gnu.org/licenses/ or write to the Free Software Foundation, Inc., + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. */ + +-#if defined (__cplusplus) +-#include +-#else +-#include +-#endif + #include +-#include + +-#include "gmp.h" +-#include "mpfr.h" ++#include "mpfr-impl.h" ++ + #ifdef MPFR + #include "mpf2mpfr.h" + #endif +@@ -228,6 +222,16 @@ + exit (1); + } + ++ /* non-regression tests for bugs fixed in revision 11565 */ ++ mpf_set_si (x, -1); ++ MPFR_ASSERTN(mpf_fits_ulong_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_slong_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_uint_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sint_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_ushort_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sshort_p (x) != 0); ++ MPFR_ASSERTN(mpf_get_si (x) == -1); ++ + /* clear all variables */ + mpf_clear (y); + mpf_clear (x); -- GitLab From 2bd0cc121d598b5219e4924be2d17046238e6a4a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 4 Jul 2017 13:23:30 +0200 Subject: [PATCH 037/845] use released version of GCC 6.4.0 --- easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb index 9dbb7d3700..8c17a18894 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb @@ -22,7 +22,7 @@ source_urls = [ ] sources = [ - 'gcc-%(version)s-RC-20170628.tar.gz', # FIXME 'gcc-%(version)s.tar.bz2', + 'gcc-%(version)s.tar.gz', 'gmp-6.1.2.tar.bz2', 'mpfr-%s.tar.bz2' % mpfr_version, 'mpc-1.0.3.tar.gz', @@ -40,7 +40,7 @@ patches = [ ] checksums = [ - '005e58fb723efb3bf51dac5db8a5edf7c66ea2e7ddb6de6ed02dbb74fcc31f80', # gcc-6.4.0.tar.bz2 + '4715f02413f8a91d02d967521c084990c99ce1a671b8a450a80fbd4245f4b728', # gcc-6.4.0.tar.gz '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.gz '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz -- GitLab From b19681c8d8faf724a4e0c2e20dfc55c17b6a9929 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Tue, 4 Jul 2017 14:44:34 +0200 Subject: [PATCH 038/845] Add Salmon for foss-2016b with dependencies --- .../j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb | 32 +++++++++++++++ .../Salmon-0.8.2-foss-2016b-Python-2.7.12.eb | 41 +++++++++++++++++++ .../Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch | 12 ++++++ 3 files changed, 85 insertions(+) create mode 100644 easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb create mode 100644 easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb create mode 100644 easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb new file mode 100644 index 0000000000..ff9fe9e8d2 --- /dev/null +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild + +easyblock = 'ConfigureMake' + +name = 'Jellyfish' +version = '2.2.6' + +homepage = 'http://www.genome.umd.edu/jellyfish.html' +description = """ Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/gmarcais/Jellyfish/releases/download/v%(version)s'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e'] + +parallel = 1 + +# The tests for the Bloom filter are statistical tests and can randomly fail, they actually don't make a lot of sense +runtest = "check GTEST_FILTER=-'*Bloom*'" + +postinstallcmds = ["cp config.h %(installdir)s/include/%(namelower)s-%(version)s/%(namelower)s/"] + +sanity_check_paths = { + 'files': ['bin/jellyfish'], + 'dirs': [] +} + +modextrapaths = {'CPATH': 'include/%(namelower)s-%(version)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..0eaeb53856 --- /dev/null +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,41 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild + +easyblock = 'CMakeMake' + +name = 'Salmon' +version = '0.8.2' + +homepage = 'https://github.com/COMBINE-lab/salmon' +description = """Salmon is a wicked-fast program to produce a highly-accurate, + transcript-level quantification estimates from RNA-seq data.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True, 'openmp': True} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/COMBINE-lab/salmon/archive/'] + +checksums = ['299168e873e71e9b07d63a84ae0b0c41b0876d1ad1d434b326a5be2dce7c4b91'] + +patches = ['Salmon-%(version)s_CMAKE_CXX_FLAGS.patch'] + +python = 'Python' +pyver = '2.7.12' +versionsuffix = '-%s-%s' % (python, pyver) + +builddependencies = [('CMake', '3.7.2')] + +dependencies = [ + ('Boost', '1.63.0', versionsuffix), + ('tbb', '2017_U5'), + ('Jellyfish', '2.2.6'), +] + +sanity_check_paths = { + 'files': ['bin/salmon'], + 'dirs': [] +} + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch new file mode 100644 index 0000000000..396046c304 --- /dev/null +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch @@ -0,0 +1,12 @@ +* don't hardcode $CMAKE_CXX_FLAGS +--- salmon-0.8.2/CMakeLists.txt.orig 2017-07-03 13:31:00.000000000 +0200 ++++ salmon-0.8.2/CMakeLists.txt 2017-07-03 13:49:34.000000000 +0200 +@@ -32,7 +32,7 @@ + + ## Set the standard required compile flags + # Nov 18th --- removed -DHAVE_CONFIG_H +-set (CMAKE_CXX_FLAGS "-pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") ++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -L$ENV{EBROOTJELLYFISH}/lib -ljellyfish-2.0 -pthread -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") + + ## + # OSX is strange (some might say, stupid in this regard). Deal with it's quirkines here. -- GitLab From 47b25139d47479665894c37184c3670edf781600 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 5 Jul 2017 07:48:44 +0200 Subject: [PATCH 039/845] Add dependency tbb --- .../easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb new file mode 100644 index 0000000000..17d6caf922 --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb @@ -0,0 +1,17 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild + +name = 'tbb' +version = '2017_U5' + +homepage = 'https://01.org/tbb/' +description = """Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that + take full advantage of multicore performance, that are portable, composable and have future-proof scalability.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/01org/tbb/archive/'] +sources = ['%(version)s.tar.gz'] + +checksums = ['780baf0ad520f23b54dd20dc97bf5aae4bc562019e0a70f53bfc4c1afec6e545'] + +moduleclass = 'lib' -- GitLab From 623780a3037913c17a05ff27dc35daef8f9182e0 Mon Sep 17 00:00:00 2001 From: zao Date: Wed, 5 Jul 2017 09:54:44 +0200 Subject: [PATCH 040/845] Fix bug in ubsan.c that prevents GCC 7.1 from building GCC 6.3 --- .../g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch | 12 ++++++++++++ easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb | 1 + 2 files changed, 13 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch new file mode 100644 index 0000000000..8b5e6acbfb --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch @@ -0,0 +1,12 @@ +diff -ru gcc-6.3.0-orig/gcc/ubsan.c gcc-6.3.0/gcc/ubsan.c +--- gcc-6.3.0-orig/gcc/ubsan.c 2016-12-07 23:39:29.000000000 +0100 ++++ gcc-6.3.0/gcc/ubsan.c 2017-07-05 08:57:03.297566616 +0200 +@@ -1471,7 +1471,7 @@ + + expanded_location xloc = expand_location (loc); + if (xloc.file == NULL || strncmp (xloc.file, "\1", 2) == 0 +- || xloc.file == '\0' || xloc.file[0] == '\xff' ++ || xloc.file[0] == '\0' || xloc.file[0] == '\xff' + || xloc.file[1] == '\xff') + return false; + diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb index 603d43dcde..b95420541e 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb @@ -37,6 +37,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20161215.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), 'GCCcore-6.2.0-fix-find-isl.patch', + 'GCCcore-6.3.0-fix-ubsan.patch', ] checksums = [ -- GitLab From a1c4e3f18a7bccbcfca3112a36b5be50f3d8cd3a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 5 Jul 2017 07:58:15 +0200 Subject: [PATCH 041/845] Move Python versionsuffix up --- .../s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb index 0eaeb53856..3b07e6d2d4 100644 --- a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -4,6 +4,7 @@ easyblock = 'CMakeMake' name = 'Salmon' version = '0.8.2' +versionsuffix = '-Python-2.7.12' homepage = 'https://github.com/COMBINE-lab/salmon' description = """Salmon is a wicked-fast program to produce a highly-accurate, @@ -19,10 +20,6 @@ checksums = ['299168e873e71e9b07d63a84ae0b0c41b0876d1ad1d434b326a5be2dce7c4b91'] patches = ['Salmon-%(version)s_CMAKE_CXX_FLAGS.patch'] -python = 'Python' -pyver = '2.7.12' -versionsuffix = '-%s-%s' % (python, pyver) - builddependencies = [('CMake', '3.7.2')] dependencies = [ -- GitLab From 1029301d3b150a028e78c311aab8db916cd41c1b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 5 Jul 2017 10:22:23 +0200 Subject: [PATCH 042/845] Patch for compiler flags and Jellyfish --- .../Salmon-0.8.2-foss-2016b-Python-2.7.12.eb | 2 +- .../Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch | 12 --- ...Salmon-0.8.2_skip-included-Jellyfish.patch | 99 +++++++++++++++++++ 3 files changed, 100 insertions(+), 13 deletions(-) delete mode 100644 easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch create mode 100644 easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb index 3b07e6d2d4..6ff3af6070 100644 --- a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -18,7 +18,7 @@ source_urls = ['https://github.com/COMBINE-lab/salmon/archive/'] checksums = ['299168e873e71e9b07d63a84ae0b0c41b0876d1ad1d434b326a5be2dce7c4b91'] -patches = ['Salmon-%(version)s_CMAKE_CXX_FLAGS.patch'] +patches = ['Salmon-%(version)s_skip-included-Jellyfish.patch'] builddependencies = [('CMake', '3.7.2')] diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch deleted file mode 100644 index 396046c304..0000000000 --- a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_CMAKE_CXX_FLAGS.patch +++ /dev/null @@ -1,12 +0,0 @@ -* don't hardcode $CMAKE_CXX_FLAGS ---- salmon-0.8.2/CMakeLists.txt.orig 2017-07-03 13:31:00.000000000 +0200 -+++ salmon-0.8.2/CMakeLists.txt 2017-07-03 13:49:34.000000000 +0200 -@@ -32,7 +32,7 @@ - - ## Set the standard required compile flags - # Nov 18th --- removed -DHAVE_CONFIG_H --set (CMAKE_CXX_FLAGS "-pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") -+set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -L$ENV{EBROOTJELLYFISH}/lib -ljellyfish-2.0 -pthread -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") - - ## - # OSX is strange (some might say, stupid in this regard). Deal with it's quirkines here. diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch new file mode 100644 index 0000000000..cc8f3208b9 --- /dev/null +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch @@ -0,0 +1,99 @@ +* skip downloading and building of Jellyfish, since it's provided via EasyBuild already +* don't hardcode $CMAKE_CXX_FLAGS +author: Paul Jähne +--- CMakeLists.txt.orig 2017-07-05 08:07:10.000000000 +0200 ++++ CMakeLists.txt 2017-07-05 08:15:13.000000000 +0200 +@@ -32,7 +32,7 @@ + + ## Set the standard required compile flags + # Nov 18th --- removed -DHAVE_CONFIG_H +-set (CMAKE_CXX_FLAGS "-pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") ++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -L$ENV{EBROOTJELLYFISH}/lib -ljellyfish-2.0 -pthread -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") + + ## + # OSX is strange (some might say, stupid in this regard). Deal with it's quirkines here. +@@ -459,33 +459,6 @@ + BUILD_IN_SOURCE TRUE + ) + +-find_package(Jellyfish 2.2.6) +- +-if (NOT JELLYFISH_FOUND) +-message("Build system will fetch and build Jellyfish") +-message("==================================================================") +-ExternalProject_Add(libjellyfish +- DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external +- ## +- #URL https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz +- #DOWNLOAD_NAME jellyfish-2.2.6.tgz +- #URL_HASH SHA1=53819a57ea8ffae26e3f917babf978f8215ef117 +- #TLS_VERIFY FALSE +- ## +- DOWNLOAD_COMMAND curl -k -L https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz -o jellyfish-2.2.6.tgz && +- ${SHASUM} 4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e jellyfish-2.2.6.tgz && +- rm -fr jellyfish-2.2.6 && +- tar -xzvf jellyfish-2.2.6.tgz +- SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.6 +- INSTALL_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/install +- CONFIGURE_COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.6/configure --prefix= CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_COMMAND ${MAKE} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_IN_SOURCE 1 +- INSTALL_COMMAND make ${QUIET_MAKE} install +-) +-set (FETCHED_JELLYFISH TRUE) +-endif() +- + ## Try and find TBB first + find_package(TBB 4.4 COMPONENTS tbb tbbmalloc tbbmalloc_proxy ) + +--- src/CMakeLists.txt.orig 2017-07-05 09:12:35.000000000 +0200 ++++ src/CMakeLists.txt 2017-07-05 09:18:12.000000000 +0200 +@@ -4,7 +4,6 @@ + ${GAT_SOURCE_DIR}/external + ${GAT_SOURCE_DIR}/external/cereal/include + ${GAT_SOURCE_DIR}/external/install/include +-${GAT_SOURCE_DIR}/external/install/include/jellyfish-2.2.6 + ${GAT_SOURCE_DIR}/external/install/include/bwa + ${ZLIB_INCLUDE_DIR} + ${TBB_INCLUDE_DIRS} +@@ -12,12 +11,6 @@ + ${GAT_SOURCE_DIR}/external/install/include/rapmap + ) + +-if (JELLYFISH_FOUND) +- include_directories(${JELLYFISH_INCLUDE_DIR}) +-else() +- include_directories(${GAT_SOURCE_DIR}/external/install/include/jellyfish-2.2.6) +-endif() +- + set ( SALMON_MAIN_SRCS + QSufSort.c + is.c +@@ -135,7 +128,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + ${GAT_SOURCE_DIR}/external/install/lib/libbwa.a + m + ${LIBLZMA_LIBRARIES} +@@ -160,11 +152,6 @@ + add_dependencies(salmon libboost) + endif() + +-if (${FETCHED_JELLYFISH}) +- add_dependencies(salmon_core libjellyfish) +- add_dependencies(salmon libjellyfish) +-endif() +- + if (${FETCHED_TBB}) + add_dependencies(salmon_core libtbb) + add_dependencies(salmon libtbb) +@@ -193,7 +180,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + ${GAT_SOURCE_DIR}/external/install/lib/libbwa.a + m + ${LIBLZMA_LIBRARIES} -- GitLab From 9e2358699f0c2f57d5f16769d88a663340302bd8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 5 Jul 2017 14:14:29 +0200 Subject: [PATCH 043/845] Remove parallel option --- .../s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb index 6ff3af6070..54ff0aac82 100644 --- a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -33,6 +33,4 @@ sanity_check_paths = { 'dirs': [] } -parallel = 1 - moduleclass = 'bio' -- GitLab From da07ca4793fe822b96a9387bfadcdb34f1dff7b7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 5 Jul 2017 15:04:39 +0200 Subject: [PATCH 044/845] Use name variables --- .../s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb index 54ff0aac82..a171f04582 100644 --- a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -6,7 +6,7 @@ name = 'Salmon' version = '0.8.2' versionsuffix = '-Python-2.7.12' -homepage = 'https://github.com/COMBINE-lab/salmon' +homepage = 'https://github.com/COMBINE-lab/%(namelower)s' description = """Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.""" @@ -14,11 +14,11 @@ toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'openmp': True} sources = ['v%(version)s.tar.gz'] -source_urls = ['https://github.com/COMBINE-lab/salmon/archive/'] +source_urls = ['https://github.com/COMBINE-lab/%(namelower)s/archive/'] checksums = ['299168e873e71e9b07d63a84ae0b0c41b0876d1ad1d434b326a5be2dce7c4b91'] -patches = ['Salmon-%(version)s_skip-included-Jellyfish.patch'] +patches = ['%(name)s-%(version)s_skip-included-Jellyfish.patch'] builddependencies = [('CMake', '3.7.2')] @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/salmon'], + 'files': ['bin/%(namelower)s'], 'dirs': [] } -- GitLab From aa629cffa92f94cb41641fb0028d03482e2fb12d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 4 Jul 2017 21:49:37 +0200 Subject: [PATCH 045/845] get rid of references to 'hpcugent' organisation after move to github.com/easybuilders --- CONTRIBUTING.md | 12 ++++++------ README.rst | 18 +++++++++--------- RELEASE_NOTES | 6 +++--- easybuild/easyconfigs/TEMPLATE.eb | 2 +- ...S-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb | 2 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.../t/Trinity/Trinity-2.2.0-foss-2016a.eb | 2 +- .../t/tabix/tabix-0.2.6-goolf-1.4.10.eb | 2 +- .../t/tabix/tabix-0.2.6-intel-2014b.eb | 2 +- .../t/tabix/tabix-0.2.6-intel-2016b.eb | 2 +- .../t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb | 2 +- .../t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb | 2 +- .../t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb | 2 +- .../t/tcsh/tcsh-6.18.01-foss-2015a.eb | 2 +- .../t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb | 2 +- .../t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb | 2 +- .../t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb | 2 +- .../t/tcsh/tcsh-6.18.01-intel-2014b.eb | 2 +- .../t/tcsh/tcsh-6.18.01-intel-2015a.eb | 2 +- .../t/tcsh/tcsh-6.19.00-intel-2015a.eb | 2 +- .../t/tcsh/tcsh-6.19.00-intel-2016a.eb | 2 +- .../t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb | 2 +- .../u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb | 2 +- .../u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb | 2 +- .../u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb | 2 +- .../u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb | 2 +- .../u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb | 2 +- .../u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb | 2 +- .../u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb | 2 +- .../u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb | 2 +- .../u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb | 2 +- .../u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb | 2 +- ...VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb | 2 +- .../VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb | 2 +- ...VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb | 2 +- .../VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb | 2 +- .../VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb | 2 +- ...VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb | 2 +- ...VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb | 2 +- .../VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb | 2 +- easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb | 2 +- .../VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb | 2 +- .../v/VTK/VTK-5.10.1-goolf-1.4.10.eb | 2 +- .../v/VTK/VTK-5.10.1-ictce-5.3.0.eb | 2 +- .../VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb | 2 +- .../VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb | 2 +- .../VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb | 2 +- .../VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb | 2 +- .../VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb | 2 +- .../VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb | 2 +- .../VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb | 2 +- .../v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb | 2 +- easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb | 2 +- .../VampirServer-8.4.1-gompi-2015a.eb | 2 +- .../VampirTrace-5.14.4-goolf-1.5.14.eb | 2 +- .../v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb | 2 +- .../v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb | 2 +- .../v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb | 2 +- .../v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb | 2 +- .../v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb | 2 +- .../v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb | 2 +- .../Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb | 2 +- .../Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb | 2 +- .../Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb | 2 +- ...2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb | 2 +- .../Velvet-1.2.10-intel-2015b-mt-kmer_100.eb | 2 +- ....2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb | 2 +- .../Velvet-1.2.10-intel-2015b-mt-kmer_31.eb | 2 +- .../Velvet-1.2.10-intel-2017a-mt-kmer_37.eb | 2 +- .../ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb | 2 +- .../easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb | 2 +- .../v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb | 2 +- .../Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../v/vsc-mympirun/vsc-mympirun-3.2.1.eb | 2 +- .../easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb | 2 +- .../w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb | 2 +- .../w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb | 2 +- .../w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb | 2 +- .../w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb | 2 +- ...i2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb | 2 +- ...ki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../wkhtmltopdf-0.12.3-Linux-x86_64.eb | 2 +- .../wxPropertyGrid-1.4.15-GCC-4.7.3.eb | 2 +- .../wxPropertyGrid-1.4.15-GCC-4.9.2.eb | 2 +- .../x/XZ/XZ-5.2.2_compat-libs.patch | 2 +- .../YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb | 2 +- .../YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb | 2 +- .../y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb | 2 +- .../y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb | 2 +- .../y/Yasm/Yasm-1.3.0-foss-2015a.eb | 2 +- .../y/Yasm/Yasm-1.3.0-foss-2016a.eb | 2 +- .../y/Yasm/Yasm-1.3.0-foss-2016b.eb | 2 +- .../y/Yasm/Yasm-1.3.0-foss-2017a.eb | 2 +- .../y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb | 2 +- .../y/Yasm/Yasm-1.3.0-gimkl-2017a.eb | 2 +- .../y/Yasm/Yasm-1.3.0-intel-2015b.eb | 2 +- .../y/Yasm/Yasm-1.3.0-intel-2016a.eb | 2 +- .../y/Yasm/Yasm-1.3.0-intel-2016b.eb | 2 +- .../y/Yasm/Yasm-1.3.0-intel-2017a.eb | 2 +- .../easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb | 2 +- .../z/zsync/zsync-0.6.2-goolf-1.4.10.eb | 2 +- .../z/zsync/zsync-0.6.2-ictce-5.3.0.eb | 2 +- setup.py | 4 ++-- test/__init__.py | 2 +- test/easyconfigs/easyconfigs.py | 2 +- test/easyconfigs/styletests.py | 2 +- test/easyconfigs/suite.py | 2 +- 1499 files changed, 1515 insertions(+), 1515 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index fe82903a6c..920072b756 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -5,7 +5,7 @@ We'd love you to contribute back to EasyBuild, and here's how you can do it: the ### Fork easybuild-easyconfigs -First, you'll need to fork [easybuild-easyconfigs on GitHub](http://github.com/hpcugent/easybuild-easyconfigs). +First, you'll need to fork [easybuild-easyconfigs on GitHub](https://github.com/easybuilders/easybuild-easyconfigs). If you do not have a (free) GitHub account yet, you'll need to get one. @@ -25,10 +25,10 @@ Pull the _develop_ branch from the main easybuild-easyconfigs repository: ```bash cd easybuild -git remote add github_hpcugent git@github.com:hpcugent/easybuild-easyconfigs.git +git remote add github_easybuilders git@github.com:easybuilders/easybuild-easyconfigs.git git branch develop git checkout develop -git pull github_hpcugent develop +git pull github_easybuilders develop ``` ### Keep develop up-to-date @@ -39,7 +39,7 @@ Make sure you update it every time you create a feature branch (see below): ```bash git checkout develop -git pull github_hpcugent develop +git pull github_easybuilders develop ``` @@ -49,7 +49,7 @@ git pull github_hpcugent develop ### Pick a branch name Please try and follow these guidelines when picking a branch name: - * use the number of the issue as a prefix for your branch name, e.g. `86_` for issue [#86](https://github.com/hpcugent/easybuild-framework/issues/86) + * use the number of the issue as a prefix for your branch name, e.g. `86_` for issue [#86](https://github.com/easybuilders/easybuild-framework/issues/86) * append a short but descriptive branch name, in which words are joined by underscores, e.g. `86_encoding_scheme` ### Create branch @@ -113,7 +113,7 @@ If you're contributing code to an existing issue you can also convert the issue GITHUBUSER=your_username && PASSWD=your_password && BRANCH=branch_name && ISSUE=issue_number && \ curl --user "$GITHUBUSER:$PASSWD" --request POST \ --data "{\"issue\": \"$ISSUE\", \"head\": \"$GITHUBUSER:$BRANCH\", \"base\": \"develop\"}" \ -https://api.github.com/repos/hpcugent/easybuild-easyconfigs/pulls +https://api.github.com/repos/easybuilders/easybuild-easyconfigs/pulls ``` This is currently only supported by github from the command line and not via the web interface. You might also want to look into [hub](https://github.com/defunkt/hub) for more command line features. diff --git a/README.rst b/README.rst index b6fcf302e9..ff6d26a0ab 100644 --- a/README.rst +++ b/README.rst @@ -1,7 +1,7 @@ -.. image:: http://hpcugent.github.io/easybuild/images/easybuild_logo_small.png +.. image:: http://easybuilders.github.io/easybuild/images/easybuild_logo_small.png :align: center -`EasyBuild `_ is a software build +`EasyBuild `_ is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way. @@ -15,7 +15,7 @@ The EasyBuild documentation is available at http://easybuild.readthedocs.org/. The easybuild-easyconfigs package is hosted on GitHub, along with an issue tracker for bug reports and feature requests, see -http://github.com/hpcugent/easybuild-easyconfigs. +https://github.com/easybuilders/easybuild-easyconfigs. Related Python packages: @@ -23,23 +23,23 @@ Related Python packages: * the EasyBuild framework, which includes the ``easybuild.framework`` and ``easybuild.tools`` Python packages that provide general support for building and installing software - * GitHub repository: http://github.com/hpcugent/easybuild-framework + * GitHub repository: https://github.com/easybuilders/easybuild-framework * PyPi: https://pypi.python.org/pypi/easybuild-framework * **easybuild-easyblocks** * a collection of easyblocks that implement support for building and installing (groups of) software packages - * GitHub repository: http://github.com/hpcugent/easybuild-easyblocks + * GitHub repository: https://github.com/easybuilders/easybuild-easyblocks * package on PyPi: https://pypi.python.org/pypi/easybuild-easyblocks *Build status overview:* * **master** branch: - .. image:: https://travis-ci.org/hpcugent/easybuild-easyconfigs.svg?branch=master - :target: https://travis-ci.org/hpcugent/easybuild-easyconfigs/branches + .. image:: https://travis-ci.org/easybuilders/easybuild-easyconfigs.svg?branch=master + :target: https://travis-ci.org/easybuilders/easybuild-easyconfigs/branches * **develop** branch: - .. image:: https://travis-ci.org/hpcugent/easybuild-easyconfigs.svg?branch=develop - :target: https://travis-ci.org/hpcugent/easybuild-easyconfigs/branches + .. image:: https://travis-ci.org/easybuilders/easybuild-easyconfigs.svg?branch=develop + :target: https://travis-ci.org/easybuilders/easybuild-easyconfigs/branches diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 31cbc5078b..1dcd904d75 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -749,7 +749,7 @@ feature + bugfix release Xmipp (#1489) - added easyconfigs for new (Cray-specific) toolchains (#1538): CrayGNU, CrayIntel, CrayCCE - initially supported software (using CrayGNU toolchains): CP2K, GROMACS, HPL, Python + numpy/scipy, WRF (#1558) - - see also https://github.com/hpcugent/easybuild/wiki/EasyBuild-on-Cray + - see also https://github.com/easybuilders/easybuild/wiki/EasyBuild-on-Cray - added new easyconfigs for existing toolchains: goolf/1.5.16, intel/2014.06 - added additional easyconfigs for various supported software packages: version updates, different toolchains, ... including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3 and v3.2.0, PETSc/SLEPc v3.5.3, WIEN2k v14.1 @@ -789,7 +789,7 @@ feature + bugfix release - various other enhancements, including: - don't define $LDSHARED in zlib easyconfigs (#1350) - this fixes the long-standing "no version information available" issue with zlib - - see also https://github.com/hpcugent/easybuild-framework/issues/108 + - see also https://github.com/easybuilders/easybuild-framework/issues/108 - add unit test to check that all extra_options keys are defined in EasyConfig instance (#1378) - add source MD5 checksums in all GCC easyconfigs (#1391) - speeding up the unit tests by avoiding rereading of same easyconfig file (#1432) @@ -800,7 +800,7 @@ feature + bugfix release - revert version of Libint dependency to 1.1.4 in CP2K v2.5.1 easyconfig (#1144) - added Java dependencies to EMBOSS easyconfigs (#1167) - don't list 'lto' as a language in GCC easyconfigs (#1286) - - related to the fixes in the GCC easyblock, see hpcugent/easybuild-easyblocks#535 + - related to the fixes in the GCC easyblock, see easybuilders/easybuild-easyblocks#535 - rename libint2 easyconfigs as Libint v2 easyconfigs (#1287) - fix mpi4py source_urls in Python easyconfigs (#1306) - consistently use CLooG 0.18.0 for GCC 4.8 series (#1392) diff --git a/easybuild/easyconfigs/TEMPLATE.eb b/easybuild/easyconfigs/TEMPLATE.eb index 69759ec8da..06218cade8 100644 --- a/easybuild/easyconfigs/TEMPLATE.eb +++ b/easybuild/easyconfigs/TEMPLATE.eb @@ -1,5 +1,5 @@ # Note: -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # It was auto-generated based on a template easyconfig, so it should be used with care. easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index c096f680fa..630226b1ef 100644 --- a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index 935dda4340..0b631d51e0 100644 --- a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 42399e1539..9a991355c4 100644 --- a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index 02a64a2c6f..3e655ad07e 100644 --- a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index df3ffc4bcb..07865181a7 100644 --- a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index 732b039251..947d1eff62 100644 --- a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index 916fcd7e48..ed2242bd75 100644 --- a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index 74f9dffca6..1b91de7220 100644 --- a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index 118bf6fc3b..93ba30e57e 100644 --- a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index b6ba853506..56e2941ef6 100644 --- a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb b/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb index ea0ea19754..e76944242b 100644 --- a/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index a3b2575da6..1c4e2656e2 100644 --- a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index 06a9cd2e7e..ec20c6b63d 100644 --- a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb index 3d76340994..3e1f898b70 100644 --- a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb index 5d3bf84644..04156efea5 100644 --- a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb index 9a1f3c0269..fe0372bd55 100644 --- a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb index 5bb0458964..9e6c729189 100644 --- a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb index 9ff15e2434..e6c61cba4a 100644 --- a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb index 000b5950bd..500bfbfd84 100644 --- a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb index 7d0f3c7ae3..cea77237c3 100644 --- a/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb index 57dbb97a1a..104c33d233 100644 --- a/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index 8bcb1abedd..cd15f91b8a 100644 --- a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index f4e01e36bd..df3e2919cb 100644 --- a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index 99061a9473..c7d6d38625 100644 --- a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index 15a2db61d2..30756c2e9e 100644 --- a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index e14fa5b01a..6cca8c54a5 100644 --- a/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index eae65e841f..48b977fff3 100644 --- a/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index af12b0472e..9c5bb1d47d 100644 --- a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 8035182b62..1b73cc3ce3 100644 --- a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index 8def4493c5..a151dccdce 100644 --- a/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index 0649ad44a0..802e525ec8 100644 --- a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index cad6e2ddab..740b066bb4 100644 --- a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index a41c761aaf..743a5cbdf2 100644 --- a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index ebeb826b66..0d9f914641 100644 --- a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb index 94eaf15f8d..619d4f0b69 100644 --- a/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb index df627c9d7b..dbfd632ffa 100644 --- a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb index ced2f5b555..6998de4138 100644 --- a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index 2ef873d2da..c6c9980db5 100644 --- a/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index bbabdb92a5..501b2e5aee 100644 --- a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 3011b90d17..801de9dbad 100644 --- a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 98800f3677..ae2a54ac33 100644 --- a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb index a3e495b0c6..b26666270b 100644 --- a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 2112acc096..10dd43c52c 100644 --- a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 3cff32f247..e8c4aaf751 100644 --- a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index 6e775a095b..8bc52abe18 100644 --- a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index 413650f9a5..c712b873ca 100644 --- a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index 5ef397df32..e5a7971a87 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index dc0eba6edb..b7c119348c 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index 5b960cc12d..89786fb93c 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index 21dd493eb1..6b6b2358f8 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb index 3cc61b8643..37f1ee9f61 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb index ad92c7352d..77d246ec69 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb index 0db2cb2232..61116f3e1b 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb index 8868b07c82..81a4069801 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb index b3d4b5ae5a..1a891e9ce7 100644 --- a/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index 4bda1588f1..f2354a3ca7 100644 --- a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index b9a9acd1bf..cb71a068e5 100644 --- a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index 2278befdce..e8870f1aa5 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index 7e35ed60fd..a54cdbf4ed 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index 5c2723f3cc..ef6bba63f9 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index a55ddb3780..4b7bc2353a 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index 5cb326d9c8..b4a874e646 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index 9a83935f73..6732b1f516 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index e69629310c..5e909d69c1 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index 10de39383d..c93754ab31 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index 7d4a515bd7..01e29400b7 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index c6a01d5cb9..b62bee2ccc 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index f47fc727b1..9ad41b86cd 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index c1dc7fabd0..6cff17d466 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index aa2709aff9..8a0d1877e1 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index 6a5829cb21..8ea94fe3e3 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index 897f8573da..5d65ed4da5 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index 1de33cf464..88e2d9aa12 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 367a63d0a3..b7e5aa7eff 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb index 3d384db2d6..926c752629 100644 --- a/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index 6e6602e1ac..e5256d2d34 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb index 08b113a1e9..2fbf7d9d74 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb index 6a6c3a3ab6..ccc2af2068 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index 031cdf8a76..5b33fd1e3d 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb index 0400716225..9a65ddf609 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb index f5e0842b35..dd164a4f2a 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb index 544929857c..e54476f0a4 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index 89c596b617..38680f091d 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index bd0bbb0ca0..b91d8d2d53 100644 --- a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index 23b0d23f05..aeae930afd 100644 --- a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb index 96eb4d4a94..d31a140295 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb index 627ddf488d..0748c110a0 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb index 282fc7aa9f..7e61a60bf2 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb index 2072304457..65b9cc7f01 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb index 34e650a014..6e06ea391d 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb index e4663d467a..34796e201d 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index 9bc25a5071..ee1aee5e77 100644 --- a/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index c14d1e9c4c..e4f9f9f405 100644 --- a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index 882be30c22..d640899214 100644 --- a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index e86ac02683..8976d6c40b 100644 --- a/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb index 67c9b4b47c..a1dacdc98c 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb index aa9857ce93..7031201322 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index 807ce3ee01..6165515b54 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index 3fb03037b9..2c5ec1ce14 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 974a5d000e..66d6e15438 100644 --- a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index c6a180825f..6c38105a14 100644 --- a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb index dec9b30b4f..07e343af8a 100644 --- a/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 94a0908fdc..7ebc542f5e 100644 --- a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb index 3dc6b8939e..5080a2c53c 100644 --- a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb index 91bc730999..4460cae67c 100644 --- a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index 3fa3aba61e..f332d73c30 100644 --- a/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index cca49e12bf..9f675f07bf 100644 --- a/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 6aabc3ac11..f9f4cbfcd6 100644 --- a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index ded8654240..4f58924c62 100644 --- a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb index 26e45a4b96..f2db5e1bd1 100644 --- a/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb index cdac53c708..bba047b19e 100644 --- a/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index 3a53284403..efb2f812e3 100644 --- a/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb b/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb index cda9d848b7..63fd93faa8 100644 --- a/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index e322ccb0af..d5b537170a 100644 --- a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb index 232ec42670..3f99722ada 100644 --- a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb index 3edc17b8e9..5c54eded48 100644 --- a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index 4a37b2243d..822a714f43 100644 --- a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index 2079802769..0ee39c9be9 100644 --- a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb index df55442b24..e52c131955 100644 --- a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb index b12e9042ad..e1bfaff6af 100644 --- a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb index 578f64de52..6402f3b4f0 100644 --- a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb index cd0624726e..355411d625 100644 --- a/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb index a43b075cea..2f8eece7c4 100644 --- a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb index aa9f2cf5ec..d2bcadda2e 100644 --- a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index a05d906924..730be02be3 100644 --- a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb index 9830f37904..3fd39ef56e 100644 --- a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index b4ca6871ed..e5f4cf2404 100644 --- a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index f14049a15f..0f7c4a1cb5 100644 --- a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index ce0c799863..8c8c8d6b64 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb index 261d1e65aa..05b4d75cdb 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb index ec4bc1b519..f62ff8c098 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb index 8210b35b66..d98adb2215 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index c4688cb405..aaef538e3a 100644 --- a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index 7d8e37d42d..81777b4947 100644 --- a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index 07e2cab7c0..ea62784fb7 100644 --- a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb index 2a997d6bdf..6edb4f983c 100644 --- a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb index 0361dfc86a..6ba1cb4abd 100644 --- a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb index 45442d4279..14ec77b8ce 100644 --- a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb index e12b8e7289..e14fc7614e 100644 --- a/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb index 88c6562214..ec87a9a0a1 100644 --- a/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index 4cd82eaeb6..e509bee068 100644 --- a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index 7a5c98d762..767ac0cf8a 100644 --- a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index c8c6b3d569..34593b5431 100644 --- a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb index eef9a27cd7..9c604d4a85 100644 --- a/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb index 71cade10ff..852c7755e0 100644 --- a/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli , diff --git a/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb index 909fa6783b..63102afdba 100644 --- a/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index 3804c6ccaa..55ce03a711 100644 --- a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb index 94c10ffced..fb701cf2e0 100644 --- a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index 5f373bcc46..d87f890d0f 100644 --- a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index 71400b6f39..27678245ba 100644 --- a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index 495ee12fa8..2d7908e75a 100644 --- a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index b9570c368a..3a8baa0737 100644 --- a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb index 8da8e28b17..336f9b970c 100644 --- a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb index 3fda9e525f..9210bc4b2a 100644 --- a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb index 26b61def41..b264014712 100644 --- a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb index b4c09a0c49..a6bb75721d 100644 --- a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb index 4c327fa96c..dbfcd3190c 100644 --- a/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index 0d2c3773f8..7d558ac71a 100644 --- a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index e7734dc526..4b640a501f 100644 --- a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb index b8a2739b01..ccfd573f79 100644 --- a/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb index 9c40f2197e..70a6e42479 100644 --- a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb index 79b6f833d1..76bcf79055 100644 --- a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index 2ba3b07819..9eecf23237 100644 --- a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index 76567e2542..dcf1959131 100644 --- a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb index 66720a2d37..81bacb467e 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb index e8fe446e8b..dae024dd09 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb index 42dc94a346..b878f2b439 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb index 37494982ed..a65b416429 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb index a52aa694fc..bfa34ecda1 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb index b9d1c0a574..5c9413974d 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb index 7a9b90a956..a61ec089a4 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb index f166af2248..09c2b01c03 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb index 193e10df49..b2201ef04e 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index d0373056bb..34a7df2c71 100644 --- a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index 2a354f444a..64d04fb6e5 100644 --- a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb index fb24b1b64c..02603d970f 100644 --- a/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index 831d945988..f5fe5e11ed 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index 4ef81eed36..1f1889615e 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index 07d51ab2d9..cc1196047f 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index b01834e9d7..a9f0386228 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index 9b14309ef1..1243dcfcb8 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index 6b6c92bf80..32ef6ee8bd 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 87fdb08561..fd8cedb7a9 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb index 3a3d16b550..4f5a351349 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Ghent University # Authors:: Fotis Georgatos , Ward Poelmans diff --git a/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb index 02bc1f21cc..4f6d2fd3db 100644 --- a/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb index 898d4cda78..9c6279fddf 100644 --- a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb index 96163b744c..3179b97658 100644 --- a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 795671412f..e2b533028e 100644 --- a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index b7723d7af3..c767b5e210 100644 --- a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 66555db5aa..19e0844ca8 100644 --- a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -22,7 +22,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 031d7e98f1..0800e6ccb7 100644 --- a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -22,7 +22,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index e43780a277..daf144962d 100644 --- a/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb index 5efafeb0f0..405a8b5fde 100644 --- a/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index e2bfa1c5fb..56100a1cb5 100644 --- a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index 5b66cf87a7..70d7963092 100644 --- a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index b70a682d96..c293d54a8c 100644 --- a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 9a77005cb5..0719af199a 100644 --- a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index 0674deea91..4802aa3c15 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index f6e72f3fb7..bb745faa33 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index a5a53cf83d..1d942af521 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb index f598583eb7..30945704b7 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index 6d7dc91575..e205e2d8ac 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index f7709440c3..5a1d132b7c 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 93b76ef8be..4ebae49b2a 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb index 6b5c1c6d52..a55aa9d2cf 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb index c055778c8e..5995eab527 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Maxime Schmitt , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb index aa09a6e789..5bd2d17aaf 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Maxime Schmitt , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb index c680dc7f26..d880a919fb 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'PackedBinary' diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb index f082a4fbeb..686bb45434 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'PackedBinary' diff --git a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb index 6fb42921f6..33c6b93585 100644 --- a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb index 0227efebd7..27afe82b2d 100755 --- a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb +++ b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index e1a0148b75..440bc7a909 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index 7fce76229e..d767191d1b 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb b/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb index 730a5cb604..53c4769900 100644 --- a/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb +++ b/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb b/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb index a251f6e6b4..86e01377a6 100644 --- a/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb +++ b/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb index 738b03c0ca..50e7938a22 100644 --- a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb b/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb index 576043e6dd..4f0e52ebff 100644 --- a/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb +++ b/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Author: Daniel D. Kinnamon # Division of Human Genetics # The Ohio State University Wexner Medical Center diff --git a/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb b/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb index 98f8c2275a..e4f561f624 100644 --- a/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb +++ b/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index 11720186ff..d45cd6848d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index b9e7f68389..31955d8aed 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb index 5661ddb517..30d9cf6f3a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Alan O'Cais # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index bec66dfd3d..07a0d34525 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 2e5a33ea9b..28155619ee 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index 1ef76d9727..eb44e9f250 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb index a1f5954bb7..f6806921ee 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index 3a06e84989..8374474780 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb index 05705b029e..9beb6f5545 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb index bf119a1eaf..661344dafe 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb index b24d010c0a..5839e4ae64 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb index a37c1d9e3b..e5248806a5 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb index e42ff28556..de29b041a3 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb index 5927ea856a..b5a5bec1bd 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb index 0d4c530534..1e6da1f343 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb index 304170650f..e7a39e24d8 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb index f0e456c431..766349c4fd 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb index 1c089451d8..d97b8a59c7 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb index 1d63ee839d..7cce783015 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb index 7303c3d70e..0c1ee484bc 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb index 543e7a0ba7..d06c3b5cb6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb index 40213b047b..21d3b4aab0 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb index f73c4759ee..65fc481bf4 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb index 5c1e645dea..c72d3ad8d7 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb index d521a6ebe2..49bcde6b70 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb index cc76e86a61..3b84dabf7b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb index 25677b6f64..a8793fcf5f 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb index 3a528809f4..a3cddb527c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb index 8a059d28e6..67f074a5f9 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb index 84750fffa9..c7071ba16e 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb index 06fbc9d74b..6ece7398d5 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb index 2a6c180878..d3009f88e2 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb index d787cbd50b..88bed3e485 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb index c8260533e6..97cf835b9b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb index 155ccd39aa..49b03cdda9 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index 97e5c8330b..43ebff1094 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index efd5845e70..7c34cc881b 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb b/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb index e14e022891..92edb6bb67 100644 --- a/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb +++ b/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Modified by Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb index 251023a5bd..92c65de8d1 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb index ec3422f109..2eb391926f 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb index 5b65e6e0a5..aa880de8ec 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index 7d1302187b..b870897d26 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index f4d08974f2..5cbd7bb040 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb index b307dca6af..b404abc90b 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb index d1c00e81a6..e0f7223e0f 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb index 4ed43caefd..4efc6b0c7d 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb index ffd5f8b8e6..dc4740370e 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez, Wiktor Jurkowski # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb index b96f53227b..8a52cdc728 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'Tarball' diff --git a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb index 0f53e3f3c3..ffdd4549c8 100644 --- a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index a4739e8c8e..c18f95594e 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb index 76e9215e88..f6de18a805 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index 5bbf580366..14232999d6 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb b/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb index 16cdd37dda..c0f5cd84bc 100644 --- a/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb +++ b/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb index 1461dc4f22..a65d17b813 100644 --- a/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb b/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb index d31c4ec289..eaea479586 100644 --- a/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb index d441a3b6be..94be2abbf8 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb index f3f69270a5..b6365defe3 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb index 0da49b06b6..4d988cb0cd 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb index a4329e5cf5..2fb0a6aeec 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb index a55a29ffe4..c4c54549a4 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb index 8c97b6b7aa..3c11c9414b 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 5daf7c4b33..60d5401e1e 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb index 87e25ede69..6c427e6894 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb index a64fc6a528..a02e6a5b24 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb index e09b9fd298..85d9b0cc0d 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb index a150b8d6d9..6dc430a123 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb index c7b71288fa..866b25a202 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb index 37ae5901c6..654ef1d919 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb index 5befdd3e11..98748d456d 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb index eb88b061dd..083100e335 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb index 0222da1546..df2e50f7ef 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb index 955ee61e30..c62cc8c37c 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb index dfa7db4489..73121f1b93 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb index 7e57ded042..6ccbd52bf5 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb index 88e63bb1ae..8ffe52e8b4 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb index bd449ad58f..347e942fa7 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb index 2018ca59b4..bc277b6746 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb index 419aba7bab..5701149cf0 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb index 2dbdeeb980..8727436b5f 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb index f4774cbbbe..17ac0a8257 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb index 88e524cd9d..44614302d1 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb index 62b042ace9..e96ea32189 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb index 04f7fad391..587cba3307 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb index 6c6c1aff71..440154e3c4 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb index 66de8f1a86..d9ece5f8bc 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb index 860efca9e4..de76a6f003 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb b/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb index c0802f9ddd..1584cea297 100644 --- a/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb +++ b/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb index 3c60714d7f..b2223051af 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb index 7fbeba0c2d..8ff8d44b31 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb index 9e9c2961a5..4cba6a6b0e 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb index b1a2aa0cf6..9f0e3941f0 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb index bbca7a748e..f601bc63da 100644 --- a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb +++ b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb index ceadf51bc5..65f9d502aa 100644 --- a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb index 7cf887ea82..528d89262c 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb index b45858d56f..8432304838 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb index 3d11d3fad4..c6c7915da3 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild ## # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb index 65f14b74d8..25bcd12143 100644 --- a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb index 25707a1810..e2b2f40c7e 100644 --- a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb index a0b996743d..336a764164 100644 --- a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb index ebd814c54e..f1ea19dfa0 100644 --- a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb index 2902acfde6..3a8d229257 100644 --- a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb index 8d561cd81b..d034b7c154 100644 --- a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb index 29cb55f251..a7199d6201 100644 --- a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb b/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb index 283940594d..c94bcc0b40 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb index f28387fbee..512e98ad2a 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb b/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb index 484da63909..1e44caf2ee 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb index 26ff0e4f6a..5462b9b74f 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb index 462ab92f17..bb428926a0 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb index c5aa94f58c..cc4c98123e 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb index f5a410bf23..74455b1860 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb index 762f84f558..7f7a694462 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb index 36d03b946c..cb2c07fb7f 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb index ee96cc0a43..d6a0d16ca9 100644 --- a/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb index 5a270ebc00..49a48ad18f 100644 --- a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index fd432782eb..63fcc66046 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index c663871a9c..cce4aa524a 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb index f63a76fa69..b9cf727486 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index f334c5a116..696fee331f 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index fa8a4e145b..c6f9f99e38 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb index a81247d559..5f0e98a15a 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb index 00cfc5cb06..45020b3fa7 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb index 8f006d9054..151407252c 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb index de611ce79f..ed9036db9f 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb index 9dc4955f2b..f453956b9e 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb index 535fcdd94e..d67420cc10 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb index 8e2370c316..726d063f44 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb index b011315af8..91e64b60c7 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb index 4dca70247f..7849523909 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb index 6cd8cef8b8..379fb19b0a 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb index 5c6e44e1e9..37dd9eeb5e 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb index 7cd080fdb1..e3549fe5dc 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb index e6c1bebf90..c461c553d1 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb index 4982ab4d19..35ea0c2d17 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb index cf2e82b71c..2e3a3b0513 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb index 637e625710..728208e851 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb index ba74ca9337..cadc838afb 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb index 8b78bff172..875117f165 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb b/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb index 9f5b2f295c..2bde81198c 100644 --- a/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb +++ b/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'CMakeMake' diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb index c86e6e0a3b..17f4948e3d 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb index 4398ec5150..6826ce4726 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index b334202a6e..b5a8101154 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb index 3c955962eb..4eba5f7b79 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index 738e6ce0b1..4779d17ea8 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index 29c92454a6..fe465ff81c 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb index 21a811ccbf..45d006c6b1 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb index 3755390098..a2bbef0236 100644 --- a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index de87300f7c..1c728da8c0 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb index d989a00acf..b9f1d711c1 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 428ecbe9cf..847f035741 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index 6fcc534d72..c2a6853c15 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index 34a00add44..3354b93931 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index 1091497ff7..02f177a07b 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb b/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb index 25c4049311..d9d9591bf7 100644 --- a/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb +++ b/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb index 98b5be9cc7..de682d1d50 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb index a459a2b2ae..ceeb82f27d 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb index 574d59a93d..4747b56abd 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb index e4650118de..9879063135 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb index 2fdb2ffa3d..6304e11440 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb index c3e01a8650..1d1c993287 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb index 5563d4c561..81ac44439d 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb index 268e532192..9c71be8290 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb index 832db33507..a251b7271b 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb index 741d95b545..47badeab0f 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb index 6709e17801..3a72410974 100644 --- a/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb b/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb index 83fba54e75..a951a89a48 100644 --- a/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb +++ b/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb index 7f2755eaba..0ede673dd5 100644 --- a/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb index b60083b2b2..b276c15679 100644 --- a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb +++ b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb index 41ffea3e50..67bfcf476e 100644 --- a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb +++ b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index 8997152413..c2e6b4b406 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb index 194a2991a9..266db17b73 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb index 437ebc2ce7..3213a31732 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb index 63bd33a5ba..41fb7a42e9 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb index c2fec1c504..bf2df9790e 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb b/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb index 76cb0b94f9..009755e0fb 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb b/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb index 920ee4c4fa..d2a841d669 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb index eecde07096..e931619230 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University, Microway # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste, Eliot Eshelman diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 45b63f0380..b9b41e5dca 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University, # Forschungszentrum Juelich diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index 72651d5b54..0752dc6cc8 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University, # Forschungszentrum Juelich diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb index b8b9c80a8d..d6aba60dab 100644 --- a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb index e9bbed8bb4..b4f49365df 100644 --- a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb index b0d7e2e41b..0b19390665 100644 --- a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb index 54bfcde59b..8e66ed510b 100644 --- a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb index d78acf92e2..2131f933b4 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb index e0ea8f21ce..e1386c970b 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index a1aed2106e..a5282bdd2a 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index 0d583d38e1..a293117d13 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index 9a54bec5f4..b85bbceaf9 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index 9f53c75fb2..e6d5a956d7 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb index 45906bfb00..9d6afe2d98 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb index 80c79f1859..3f3cf69376 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Jordi Blasco (NeSI) # License:: MIT/GPL diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb index 289cbf479a..af2eb91036 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb index 665f1371cb..1a131a403b 100644 --- a/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb index d050aae52b..509561f076 100644 --- a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb +++ b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb index 893126e7c3..319ec0d55c 100644 --- a/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb +++ b/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'Tarball' diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb index 05ffad5f40..183e2860f5 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb b/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb index 66ca5a1bc4..066a79dfcb 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb index 5a1fdbfc0b..3c76811582 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb index 12a16f8dd5..987ff2c9ae 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb index f425fcd86e..d228769b61 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 9d5881c525..3478797af3 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb index bb31f282f6..e83e5346d7 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb index a76712524b..d79fb1dcca 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb index ee437ef2f2..961f0eb891 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb index 9037365bc8..99e144ac87 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb index 23fe1ddcc9..d2ce11eb6a 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb index 3c6cb72c88..f8e1c1318f 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb index bc4ee73735..16b0d65003 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb index 2ddcf2b93a..444a714932 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb index 06226cf0b0..4b16e09c52 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb index 4286aeb066..333cd83483 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb index 2c61c0adb7..d60a1926b6 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb index 2a03b23888..dd5edaff52 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index de52a79a13..2e81136477 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 068dfd89ce..5e25ce08f3 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb b/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb index 0cb98a2054..1b697a0fc2 100644 --- a/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb +++ b/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb index 88fa4436a0..df729ad2ff 100644 --- a/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb index 1386d5329d..c89dad88b7 100644 --- a/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb +++ b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Mazur # Research IT # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 8e4f18d89d..82fce2b21b 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index 0afa91c77f..68607c8fb2 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb index 94f4a3ca61..4ad949c668 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb index ad5e3d68d5..d6ae37f211 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb index 5763a26ed1..b4f629e071 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb index c274b99b8c..259be54087 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb index 2ac3b5a935..44788c8041 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb index 7b8dca8554..7e5d556bb7 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index 25b9208f0e..4c2199c2b2 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index 9c37cd717b..0aa76e0d7c 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb index 6751cec530..0afef46d29 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index 3bf08594da..97cad490a6 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index 84c3e7baf8..98555a7a7a 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb b/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb index 3880874512..1db87d3057 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb b/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb index 66a9fe225a..f857d10d3a 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb b/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb index f3c8b6240f..66d52c698c 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index bb9da36f80..a04ee2f9d7 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index 107d08647f..30c2c7c615 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index 9684225cb7..2c027621e8 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index eb6eb8ffbf..fe9db26324 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb index 60152e7602..f6b9d86aa2 100644 --- a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb index 5bcd0e1aa3..ccc5cdbff9 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb index aaab290dcf..1c8da2633c 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb index 536c2f33c6..97236ec5ff 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb index 08976a1f68..655063d179 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb index 942648ea47..29bbebe51b 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb index d487d344f6..15b0a97b3b 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb index aceb217de4..78181eace3 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb index 9d2802684e..2eb271b2cb 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb index a4f5169761..0a914d43dd 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb index edcade8044..b5fa67bd28 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb index 6d660f5bc5..9fd455ea4e 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb index 7e135e5021..8fd82f9c4c 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb index ccfea59372..4eaa0d8f1e 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb index 8898d1ce85..1f2a8db354 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb index 6c74a88bb4..2508964d7f 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb index 99d5dfa45c..65f2550e40 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb index 63398f9cb0..9397e22d2b 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index f6fd6246c4..bb425b52f0 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb index 19f96d592f..2c2bb31863 100644 --- a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb index bc285581b6..3d1b5aebca 100644 --- a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb index 04e4fd7a51..27c3a7d1ef 100644 --- a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb +++ b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb index 1687e9b44d..f7a7f714c1 100644 --- a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb +++ b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index 76c48d1e81..2a945fa40d 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb index 7d7b15088e..000354596f 100644 --- a/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb b/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb index 5106c4165f..e27f766c81 100644 --- a/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index cfed427bb7..730559ad83 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 9021d61ff6..94063017d3 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb index 03dd2d88f6..a48cfb999d 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb index 8b40d87ea0..3f7a8cf8e8 100644 --- a/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb index 3d7e8e50d6..b4f4f41636 100644 --- a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb index 33794a918d..60fff5c063 100644 --- a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb index c1c0d70437..15ad25d3e8 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb index 198de40465..7dd70ec70b 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb index a429626ec5..1b6aee4f0e 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb index 5b6b65198e..13e8afdb7f 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb index c9a900612f..b23777f71c 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb index 9783862078..05d749936e 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb index b188df034a..6168179ce8 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb index 75d318f670..ee72d9cdc5 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb index 8ac9aea768..5f261e1c14 100644 --- a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb index ba2c506ee5..71841b9321 100644 --- a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index ee65cc074e..c8cce9a3c7 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index 176ffcb6bd..0c4dfa07a3 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index 209b0e8d81..f31aca4bb2 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index 80ab0978a1..250bf7f6ef 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index 9ad3efca4c..16a651c9b3 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index 525e2ebf3e..be9504c095 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb index 17f0b9d160..cfe2dfd1da 100644 --- a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb index 7e7f19b2ca..502c0c493a 100644 --- a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb +++ b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb index 6a13fbccbd..819bcfdba2 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb index 1fc508215c..c22351c6de 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb index aefe4f3461..10e52177b1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb index aec17460aa..b86dfbf810 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.1.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb index 12381b6467..a6804f4f58 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.10.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb index a8ef6b164a..23833e2836 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.11.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb index d2df7f1988..47f1a751e4 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.11.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb index 345d210d28..e4a27cb487 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.12.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb index 97720876b9..eb82e53707 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.12.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb index 0b5ba14c24..5455bc671c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.13.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb index 0176f2b558..bf7bef23ba 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.14.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb index 3ae286c658..bc94abbd43 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.0" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb index b4fb5e015c..567d84626d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.1" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb index 9025d6b24b..dc940ff5f3 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.2" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb index 2ac7d84426..07b994c134 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.0" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb index a7a958a3ca..063c0cae95 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.1" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb index 26fbe953cd..ca54ce2b48 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.2" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb index 84e658abed..5ab2ef518b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.2.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb index 62ec508192..74208a9b9f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.3.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb index f56094b5c0..cf1ab671cb 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.4.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb index df9a262ab2..395394e677 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.5.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb index 9082a71a46..673b37a447 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.6.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb index a2164fa02d..d63e41ec85 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.7.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb index 8fa4a0a750..f5a9269b1f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb index 1774b8976c..e18328251e 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb index d990801ac2..76df856dd7 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb index 97801124aa..d2e8a2944e 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.9.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb index 81d586f625..24720fca1c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "2.0.0" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index cb8c19e606..4a7b7be82f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.1.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb index 632563276e..84afda8b48 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.1.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb index 116950af4b..ce7e5bf141 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.2.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb index 6080ef8f0c..31548a1769 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.3.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb index bc8d7c8dd5..d7fe564a73 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.4.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb index 37d212b334..89f2840b11 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.5.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb index 01e4502a09..5d5435bb7f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.6.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb index 1ca29896e8..b09425b770 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.7.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb index 07bb77b453..2e50e9c4e7 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb index f166a5d587..d8d510a78c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb index b0edd36c96..2c33962b07 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb index 09a04b73a8..7ab918d84c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.9.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb index a77b43aaad..c9a8f9fb2a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb index 3d9fd92508..7fcaac8436 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb index 708295ab3c..ab22452b62 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb index 606f9a318d..7961017185 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb index 2dbc7fa9ba..bb9b2572df 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb index eaadea3b41..7bf19cc08b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb index d84e16eaba..97d13804f9 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.2.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb index dfebb15dea..ee42c1d6b9 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.2.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb index c11a0f20c4..5d4ea9ca97 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.3.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'http://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb index f64ca17dc1..03e5ae3142 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb index c2159638f2..29c0f0a24e 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb index ad65bdfc92..52df5baa8d 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb index 0a2271f035..0fec576ce6 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb index 0dd48816d2..70ef04ea87 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb index 9e7b9cf60d..7831be18f5 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb index 7cbefdf8ab..1e4a8f49a5 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb index 81edc7d68b..f1219c065a 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb index b3c186165b..16de65cee4 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb index 59832233f0..2ac82d539a 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index 1e6432cb6d..32b4b7697d 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb index 6a9d4b5398..84c6277a5a 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb index 7f862017dd..db59680faa 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb index 899422100c..19e0931e00 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb index 524d427c0e..89c9d6f1ca 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb index 0cfe11f239..9d263392d3 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb index f186cddd62..afcb38952d 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb b/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb index 4e0f98d635..a37c5f2e77 100644 --- a/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb +++ b/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb index 037dcd8185..94c1eb603b 100644 --- a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb index 93fe9bd8a4..9ecdd700fb 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb index cb997fa593..7738a65d8c 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb index 31a89c0085..723f27db16 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index 3b0992eef6..0c2b26660e 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 1f15e35214..8736954b97 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb index 000e1a89b7..6b26b56f8f 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb index a69a7b9e2f..0b62a9167c 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb index ef4b99cd73..c8f2a2e194 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index 1b0419e8b8..2455f164d6 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb index 88eedbe248..bfe6932967 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb b/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb index da99f9d5b8..d03b85f906 100644 --- a/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipe; see https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipe; see https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2016 Riccardo Murri # Authors:: Riccardo Murri diff --git a/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb b/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb index 76be36ffc6..81cb92955e 100644 --- a/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb +++ b/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb index 0f49be8035..7e45a7cbdc 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA, Swiss Institute of Bioinformatics # Authors:: Fotis Georgatos , Pablo Escobar Lopez diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb index 27159a0ac8..c0b720f5c0 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA, Swiss Institute of Bioinformatics # Authors:: Fotis Georgatos , Pablo Escobar Lopez diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb index 5441477664..602621d4aa 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb b/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb index 1788c8a21a..5f3c9ec326 100644 --- a/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb +++ b/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb b/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb index 189d668ffd..f17bac6c21 100644 --- a/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb +++ b/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb b/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb index 5e8c01ab2d..fa8db6dbc2 100644 --- a/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb +++ b/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 4af4d1b872..2f83116b78 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb index bca5d69508..6d15ec35c6 100644 --- a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb b/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb index 61f8e29397..2cd84ee8fc 100644 --- a/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb +++ b/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb b/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb index 51d81cd710..23357248bb 100644 --- a/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb +++ b/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb b/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb index cab481c6f4..92682e458a 100644 --- a/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb +++ b/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index 6b2e49e08a..56642aa7ab 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index ea5abc6927..34097eba86 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb index bd925b7e0f..b9beaeb6db 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb index c4cf3f3ff7..35005a8b95 100644 --- a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 6afbdb7b4c..b64688b618 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 921621187e..1b89f6c6ec 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index 7e9f79abb8..1969cdc702 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index 959d6f681a..df931a819c 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb index a6fc22eedf..afaf5a587a 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb index bae4a90d91..fd5122e871 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb index 88a772e2f8..f3b21831fe 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb index d0d5a239b6..8dd25ea92a 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb index b6d45b10ea..598a86e9b2 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb index 935f73ec90..06ec8c03a7 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb b/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb index 6ed0f40863..bd6fea5ef5 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb b/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb index afc148cb14..bc0c66d4fe 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GCC/GCC-system.eb b/easybuild/easyconfigs/g/GCC/GCC-system.eb index b24177d713..cff7cc3f07 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-system.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-system.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb index 88f756e1ce..73a29b2ebe 100644 --- a/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb +++ b/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'PerlModule' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index 633ee3c7d8..03c1be68ac 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb index b7ffec63fe..62ae81e4f0 100644 --- a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb +++ b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb index 71eda7f181..4bfe15af38 100644 --- a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb index ae8931f569..f2c4bc1afd 100644 --- a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb index 5afa7f55f9..4f13bddcdc 100644 --- a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb +++ b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb index ebe4c931a7..0260a39483 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb index 55fa61353f..271972fd7f 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb index 8ad521809b..9224bccf7f 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb index e4aa1f5c2e..90a24de0cf 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb index d00a71f2d8..4da7b9cac0 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb index 3994be6bc4..01026712de 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb index abea13b1ce..48d2d898a5 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb index f2525337c6..a93eff9b9b 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb index 6b8d559ccc..7af870d276 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb index f72c224d32..cf07fe6921 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb index 1a85f392c7..4b007038bb 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb index 9fc85b8f3e..392a977903 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb index 8ad8f765c7..b2f4ae93aa 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb index c3f26a2915..42fbccf907 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb index edcd456df0..c0b9b8febe 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb index 6cbe4c8289..fbece4acc1 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index 85881f3e38..483e81edc4 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index 8dac71d952..f8e9652452 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index 11decefff1..e046619790 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index 7bc4e4ad92..2336d79f1f 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index eaada284fd..cf451c2390 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index 95002c6f56..21de51a948 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index 4e7a111b3a..6060f72245 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index 1d36cf5099..ae821baece 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb index adf36de398..48b16c52ff 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb index f52ab6e342..0456808f10 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb index 3f046b2129..cce424c9ba 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb index b6b649c1ec..db4bdb854c 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb index 0914af5ffd..fc540e8f19 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb index f0da8f6053..dab6da36ba 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb index c7e0273a3e..1e5465d878 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb index 69bf5a5d40..a45d822382 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb index 327b471426..9fd003a18d 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb index db2a991381..100f817f32 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb index e699b7dd9b..0f65d23d03 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb index 3c8fdff8cf..9c98d6f546 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb index 5f20cd92b4..7292972b00 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb index e85182e185..922df0412b 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb index 1d0b356a9e..6db4e0caa3 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb index 2e153e4c27..ed0de02f0d 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb index ab660ee955..a3faf14469 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb index cd7029cdae..14cf03acd4 100644 --- a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb +++ b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb index 2b1345c99b..372e30a64a 100644 --- a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb +++ b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb index d2f8ea38ad..a06a2799fd 100644 --- a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb b/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb index 69e22e6cab..df06c73009 100644 --- a/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb +++ b/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb b/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb index 22ad6d392a..b56c68075d 100644 --- a/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb +++ b/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipe; see https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipe; see https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2016 Riccardo Murri # Authors:: Riccardo Murri diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index 39b5e35917..b1ff3e1fdc 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index 75c54349b6..a78d2827af 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb b/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb index f4f2214acc..ff69d49387 100644 --- a/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb +++ b/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb b/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb index c16d2b51eb..449b40c4aa 100755 --- a/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb +++ b/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index 7f241b6884..68edf4aa52 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index 316219216f..3fc62cda33 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index 12ddedc547..98ff106f5e 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index 343da7e2bc..9d558fa920 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb index 7360f033fe..6ac9c8056e 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb index 1da07f9d58..9d36d6d2e5 100644 --- a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb index ec7ac4488b..e2b308a370 100644 --- a/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 3d45dffc3f..b7a8f51ec8 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index b95685cff8..30a93a0ae6 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb index 7112a25a66..175322b4a7 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb index e30d4a22d3..98df4333c5 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb index 8f7d80279e..711098e083 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb index 5903cd754c..622c222c99 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb index 7e42e00e67..abc501af50 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb index 131131cfee..e83b27fbe1 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb index 20416b1946..09840a3a2e 100755 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb index 1181859b40..500cd9df29 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb index 22b8ccefa5..7b2974dbf3 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb b/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb index 1bf0222ad3..a16b047807 100644 --- a/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb index 3020c00623..bffc1db371 100644 --- a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb +++ b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb index 8cae45f338..d14dd7b8c3 100644 --- a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb +++ b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb index 075812f642..3f1f59fa95 100644 --- a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb +++ b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb index 04f2007013..346229a60d 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb index 677ec0c4a6..0282f12e45 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Author:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb index 87a654b58c..356edf5aad 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb index 86cfca091f..fdb8e4ad69 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb index 443c4e034e..006952caba 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb index ce75649419..24f9247f5e 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb index 0b795ea36c..9c01e1b2fa 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb b/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb index 9874a034c6..9ce0955413 100644 --- a/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb +++ b/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index 562e595557..d814155d48 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index ee8ba62195..575f1cb3a1 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index ee8eae3fa7..58666bd91f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index c4861d5fc5..180372ef32 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index de6a298e59..46ef675ae2 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index 2a1f6d334f..9368f8b014 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb index aed3e32ba8..cad1b86e44 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb index 66c915507d..eb4bc8d61f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb index 3ca7456fc5..16913ef0f2 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 05c50b39b9..36c9dbdcc4 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index a420531cae..2a8073ec74 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 259d3f70b6..1b8304beca 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index ac9bda6d5d..f65efedca6 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index a4a4c517a0..c6d311c611 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index db4a026864..3147429e4f 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index 53cb50514f..a497fa7b0e 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index 7f92d9a951..a39dfd9547 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb index 2f2abef4e6..0f044b4961 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb index 36facf37a3..ffc593fc72 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb index 7f25a2acfb..510a0b491a 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb index 258f48d92e..5770c1df40 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb index 8c0f7d5ac6..bc2b40e77d 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb index 93d7d3c6df..aa4b195ecd 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb index 7b22333e99..3cf499fca6 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb index a935ba2870..77e076361b 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb index 71dc997206..76292f8b71 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb index f75133a502..890b17a7bb 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb index 38ae993dca..beb21e0706 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb index b0528a8f0c..d8508a8bed 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb index 9bdb215d4c..6efdbf1487 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb index 5c5a91710c..6836878b7b 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb index 03cac8f884..a8c2560f6d 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb index e9e046ddd8..332b887d49 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb index 70a1e78b61..fe1544cd62 100644 --- a/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb index be548b30c0..ee79473cdf 100644 --- a/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb index fb24a4205c..c819155a71 100644 --- a/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb index 5610a087c8..cea60ec233 100644 --- a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb index a1e88b7409..789c813666 100644 --- a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb index 6bb0cfc42f..d8d59137d0 100644 --- a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb b/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb index 2cca42e4db..51f4a9d25b 100644 --- a/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb +++ b/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # authors: # * Pablo Escobar Lopez (sciCORE - University of Basel - SIB Swiss Institute of Bioinformatics) # * Benjamin Roberts (Landcare Research NZ Ltd) diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb index 03ab71fb09..5e16612e00 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb index ba5278c540..3bbb6f11e4 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb index 4a7086b810..a3ccfb16ac 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb index 2f68d383ff..d7a1d00fa6 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb index da34c32da1..369a2092f8 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb index 7502a94f71..4cabeebb51 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb index 66d029ece5..ab6a7103ce 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb index cc3235c707..d40e59455e 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb index e5a53f115d..4d411ebcda 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb index ec8e81a4ce..86ef6979c5 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb index 17c246342c..5a4fee9bff 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb index 7e4fd1539e..9453d2738a 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb index 495de72aba..11c3dbd676 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb index b01509be3a..1d846a28fe 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb index 033191a3d9..430a419631 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb index e7debfe98f..76f0bd86d1 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 5171c8b613..a1c6278078 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index a1476edd29..303ad1f1b5 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index 68b608ac4b..045ed0c649 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index 3bbd50af7c..5206bec3f8 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb index 5f71030257..237e4fd6ac 100644 --- a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors: Kenneth Hoste (UGent), Pablo Escobar Lopez (Unibas) easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb index 10342bedf0..1e7adc8498 100644 --- a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors: Kenneth Hoste (UGent), Pablo Escobar Lopez (Unibas) easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb index f15a97cd30..96e09e4442 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb index 18895dbe61..6f3261b9b3 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb index d375c69cbb..64e0d33ac6 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.1.150' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb index 4d0d75afae..721567e03f 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb index 5c1c6d97c5..0cbfad31f7 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb index 4511a57a9e..2895d405cf 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb index 2192bcc506..15866eea89 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb index 9ce84e0f30..dc7b23e0a2 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb index d1cc307109..06ec2ed952 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb index 924f53625d..126b6eb3e0 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb index 39745a0399..bada3a0811 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb index cd7f8184fe..6d8d739d3b 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb index d51e11b541..4af351f8fe 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb index f03bb37944..6753c1145f 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb index 8bf45db5e6..923d9700ec 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb index 7fc5fd1e8f..b3ced2b66f 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb index 0b2036c9e0..f7d7ee5159 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb index f961d74a1f..fcdd6710aa 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb index f89991b41e..d7cafce265 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 52e91145c6..41183af553 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb index e2ed764a7b..e047e9f7b3 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb index 6e347be3a2..de0d741a72 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb index ea60f74334..3ec7427089 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb index d622580adc..87ed0a937d 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = 'Toolchain' name = 'iccifort' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb index a32fd8278a..255161f320 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb index b40428eab7..479cec077d 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb index fdfcf853b6..a01ea21032 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.1.150' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb index 39dd006552..4a5a9da050 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb index 952e908d84..61a7a9cb99 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb index 624fe2510b..67930d3ffb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb index 148dc06764..189b6b9916 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb index 48e857188b..bbc290ac69 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb index 26de8ad254..994e8bb45e 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb index c275933f9d..d03607c38d 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb index 746cfd78bf..11f2e31d72 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb index c4b671b697..7d3dc3b6f7 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb index 73e504fad6..57a86a76d8 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb index 5df1cad542..8e46199a8e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb index 3d1b981714..3c4734b17b 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb index 9e93414ff1..9c1506b2e4 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb index f4a56beef1..e3b3a17989 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb index 8e5a35ceef..2b5ee4fd1b 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb index 8ee7c61e95..3fa553dc7b 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb index 0af3e3a3ab..5db059f41d 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb index 1af95a3473..d6118a326e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb index 97332c6ea3..1807df2103 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb index b0f86b1096..96132c62bd 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb index c272ff0803..daa347a40e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb b/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb index 33bf002bbf..b1196702a9 100644 --- a/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb +++ b/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpic' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb index a928de1ca4..c67f0e36d5 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.0.109' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb index 49c3e5d75b..5f46cfbdc5 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.1.150' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb index 91dcce3df9..41939dc99b 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb index d1edf0b015..9ec0acc472 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb index ac3a95728c..f85a4efd37 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb index 0a5bb0e3ee..710968ace7 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb index 09806746b2..8418178c3b 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb index 490c4fbf42..bf72302fc9 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb index cce72ce10a..c3af772fef 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb index 601460577a..d5a808222b 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb index ab281bf6b1..a138ed11d0 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb index ea94f4aa6a..5981bc06f0 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb index 341dbab7ed..2ec64feae2 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb index be8b68226a..105db4b7f3 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb index e28e5314fa..bbf353b48c 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb index 1f68711972..dc78fc3b80 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb index 38909739c9..324695a571 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb index 62ed829038..5c4c02adc2 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb index 3457aacbc5..35a62bb371 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb index aa746359e2..7c55fcf3e3 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb index 48a890bbcf..4222d6a26a 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb index 2d925e4ac1..fbace1b7ac 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb index 2a54c28eb8..72c0998995 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.1.109' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb index 71b0e15d81..eddf864db7 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.2.150' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb index 8f1eb713c5..b779e3185b 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb index 72d570c9ae..b05f10add0 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index 212b21a522..a8d2a5e21e 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb index 783cda572d..2886d91689 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 420224789e..da9923db0a 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb index b61daed0c1..2da07ac2d4 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/intel/intel-2016.00.eb b/easybuild/easyconfigs/i/intel/intel-2016.00.eb index 2f03a7cc46..f4149f4027 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.00.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.00.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'intel' diff --git a/easybuild/easyconfigs/i/intel/intel-2016.01.eb b/easybuild/easyconfigs/i/intel/intel-2016.01.eb index 7c51ee2938..1f12eaea94 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.01.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'intel' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb index 9c2c6b52a5..b648d9709a 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iompi' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017a.eb b/easybuild/easyconfigs/i/iompi/iompi-2017a.eb index 571b319a14..c74e1212e9 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017a.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iompi' diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb index d0c1108872..076891eb84 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb index 9e1ed006d5..adaf15166d 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb index 76755f474c..38931e456f 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb index b168dd347e..9d8a457376 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb index 1474dde18b..ff82e5fae9 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb index 8e2a518511..6ff63e83c0 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb index 6acf8320e7..a27ec31e26 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb index bd77b8e773..6db319bc18 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb index e874c05030..948d483703 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb index 5e170ee4c5..c33284a909 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb index ff49f091da..9c8c977462 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb index 01b9cb403d..d8949f35fa 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb index 09aa380fc6..1696c554aa 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb index 3c4304258a..e619e71cb4 100644 --- a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb +++ b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb index f01140a3e5..dafa45afa9 100644 --- a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb +++ b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb index 9d74f7a398..54e8f3a226 100644 --- a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'CMakeMake' diff --git a/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb index a821aa77f2..2d87b632b4 100644 --- a/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb index 68addbe817..5e1eea59c2 100644 --- a/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb index a1da0d2c90..d087299b3c 100644 --- a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb index 042510cf2a..f61518de91 100644 --- a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb b/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb index d7a88ce495..64d822c449 100644 --- a/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb index 18cafee304..fa8505d85c 100644 --- a/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 82b1a9bd7b..47a560f2cc 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index 5b7a6a1f5c..8aa4e392fe 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb b/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb index 6e7ff8a596..9e716ad72c 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb b/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb index 801057a84f..161e209f29 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb b/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb index 27a91f92c0..4232098544 100644 --- a/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb +++ b/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index b741841310..73513a342d 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index 3b637dfd68..c9a462f4f4 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb index 2d0643c0a8..a27f793005 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb index 42a3e46a06..8db6c03653 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb index a080abfe8e..c0287c6b3a 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb index 769d5c3bf4..4efb1e7e06 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb index 9fdf349e0c..c4f46971bf 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb index caf97944ef..01eb7c0c93 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb index a7ec21003e..4b2b2093c4 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb index 2ebd87d4b6..3dc8674fdf 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb index 259a9d8bc6..382c881a95 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb index f513557a05..76688580b9 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb index a7365c221f..a98972105e 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb index b666f47dc2..fda1e3ceb5 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb index 9281e4ddc9..cb758aec72 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb index e74567cf30..49f589e6d4 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb index 073c1b3d60..bc88218600 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb index 445e665d1d..c1c395504c 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) diff --git a/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb b/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb index f0951b2b35..32aac5dd56 100644 --- a/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipe; see https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipe; see https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2016 Riccardo Murri # Authors:: Riccardo Murri diff --git a/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb b/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb index 5abfa7b4da..cb155b9c9f 100644 --- a/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb index 3ee23b3ce7..3870f8d203 100644 --- a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index d1eb5179b8..d656d8a7e2 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb index f9975e31e2..0e5f0b7f04 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb index 5856a57c8d..c1f0033e09 100644 --- a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index 2f55afa678..9a49b39337 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb index 1b5c00b84c..e53635c2b0 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index 7ff4a544d3..29770eb9ac 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb index a911adbdf6..b6e7c90fb8 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb index 733d12d5e4..6f04e6d6a8 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb index c1b5b27e46..21f520c0e6 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb index 0c761422aa..416434ef6e 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb index ede4708977..34834f9883 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb index 29d1902d63..c6e5039403 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb index f150abd20c..6400af43d6 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb index 2b4825fe33..041fd7f660 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb index b87a22de76..144f1b9687 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 4ae4db7879..b8af039cc7 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index 51b4352aa5..e851a2e134 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index 1383948289..b13bc6b78f 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index ff0da7e033..f14a7e7513 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb index 2a9749a581..17d86127bf 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb index cf285fb5ec..0af648ec22 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb index c715793903..bb08d2990a 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb index e7ae73819e..83ca6c3ec6 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb index 44f94ecc3d..c04077ae4e 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb index ebb2f3de9b..1d91bac04d 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb @@ -1,7 +1,7 @@ ## # -*- mode: python; -*- # EasyBuild reciPY for LikWid -- see https://github.com/RRZE-HPC/likwid -# as per https://github.com/hpcugent/easybuild +# as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2017 UL HPC -- hpc.uni.lu # Authors:: UL HPC Team diff --git a/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb index b38fb421b8..5558b79e5f 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb @@ -1,7 +1,7 @@ ## # -*- mode: python; -*- # EasyBuild reciPY for LikWid -- see https://github.com/RRZE-HPC/likwid -# as per https://github.com/hpcugent/easybuild +# as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2017 UL HPC -- hpc.uni.lu # Authors:: UL HPC Team diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb index 54365e5c12..4811e3333a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb index 41431f6ed6..08c0165d80 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb index 91d64e5bd3..dfbd2123ff 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb index cb0daa392f..0c6c8895af 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb index e59131c48f..4f5b6c32ba 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb index c9b8ae162c..09ed58a2b9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb index d52dd469f6..91e9fc5026 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb index 5658dda837..18abbd3731 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb index 006446b9f0..675ca2e5f8 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb index e7a4d305fe..49ea4854d5 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb index 6e2de92ed5..b86be0771d 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb index ab63650383..cf9325ba99 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb index 4a7f47d9bc..7c607c059e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb index 72fbf1541b..25039d6e39 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb index 83effb6682..697ed59231 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb index d508b59ac7..9fd2f629f9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.26', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb index 702e859518..3ea2d5a8a5 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.26', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb index 87ca206fb4..dfbcc45466 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.27', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb index 9a89ad1fbd..a888ba53c1 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.27', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb index 9fd3840472..e74ca76bb2 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb index 222b4603e6..89d12d3ecc 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb index 8d48b94390..b8a22e8dd1 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb index 4190871d6e..9f81198d34 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb index a244ff7f0d..abf727c78d 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb index 6b8e25d1d4..8a2f6a69b7 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb index 414bbac849..c94c57b0c9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb index e93393c961..ac1d3f2336 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb index 32fe2f7b78..d6580cb3e9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb index 3d6737ba08..7121f7d172 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb index 04ba474daf..75de298f7a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb index ca3c0c7b6c..0157f04741 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb index e8ed91309a..740881ec34 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb index a896f05992..e141025d05 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb index bd224278e8..39930debab 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb index 942e49510c..0f8a70041c 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb index dbdac66931..0f22f64f82 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb index 683e8274c8..aba40b2a53 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb index 2b9dd5a6b8..308aa5a579 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb index d339ed79b8..4da8a15bac 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17.eb index 159d8d0173..92afdc0086 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17.eb @@ -16,7 +16,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb index c1c1439bf3..34356fc1a7 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.26', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb index ffbaa7a77a..ae199e4d28 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.27', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb index 18394615f9..0c20559e8b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.28', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb index f186b0ad85..bce719edb0 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb @@ -16,7 +16,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb b/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb index b2fe855c56..708d54f146 100644 --- a/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb +++ b/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb index fe54887474..a1e0594673 100644 --- a/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb index 74d5a36f68..d1dc14f1ec 100644 --- a/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2015 Virginia Bioinformatics Institute at Virginia Tech # Authors:: Dominik L. Borkowski diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb index 66ff95669d..301e024b2e 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb index 6bf747d607..de247f7e05 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb index 725469edc9..420ca72862 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb index 013f802b61..fb42e73bb6 100644 --- a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb index 05e18b2e8b..92679ceb39 100644 --- a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb +++ b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index b1a95f4031..79f149914d 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index 0619f29465..8922cbe4f1 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb b/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb index a3ab3c4257..82d928f902 100644 --- a/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb +++ b/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016, UNIGE # Authors:: Yann Sagon diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index 2b1ca4f4f3..a51d0ef450 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 8c5d271d61..71e10b9d12 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb index 6c78bbddaf..11cadedbcf 100644 --- a/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb index 9077537b1d..c3c02301be 100644 --- a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb +++ b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb index a98288f900..8006954711 100644 --- a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb +++ b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb index 3ce4130b75..054ec92efa 100644 --- a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb +++ b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb index 6e3b23ba3c..d8d121944a 100644 --- a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb +++ b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb index 8577e3deb4..e553dd3905 100644 --- a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb +++ b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb b/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb index 9830a06815..733f6228b4 100644 --- a/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb +++ b/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb index 279406579d..d8f8b6c576 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb index c1b84b6840..1c9331d3a6 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb index 7f6b9e72b5..c14d1b405f 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb index 89fe1f89da..5f3eab90e4 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb index 2a22c67912..e8c2cf7793 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb index 8471838376..df73ec7490 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb index 026425a12b..0107cb4698 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb index f41c1f7758..57e72b59d6 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb index eb4529c9fa..839544e3dd 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Andreas Panteli , diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb index 2998cc688a..6ff84960dd 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb index 467b83b6ce..03afecade9 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb index a3e8ea9b64..d1011fd9c1 100644 --- a/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb index 9ce401d07a..39ec3bd32a 100644 --- a/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb index 973e13d894..086df1b66a 100644 --- a/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb index b454981b04..9a34deab14 100644 --- a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb index e008b133f5..6c4e322386 100644 --- a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb b/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb index 75f0da13ce..08c7be2718 100644 --- a/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb +++ b/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2017 University of Geneva # Authors:: Yann Sagon diff --git a/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb b/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb index 8357cd6199..b268eeb163 100644 --- a/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb +++ b/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb b/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb index 5b5a91c678..752b5a4a61 100644 --- a/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb +++ b/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb index 3887c3f2e8..2fa6bdbab4 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb index 98f80aa50e..ec9153655e 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb index 3af2bae350..db06302aba 100644 --- a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb index 3f4fca5919..644456e884 100644 --- a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb b/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb index 947de950b4..8577f2b939 100644 --- a/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb index c110a85228..653db9e11e 100644 --- a/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb b/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb index c6a015a815..262f951ba0 100644 --- a/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb index 4beaf4d721..f59e41f393 100644 --- a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb index 5da93a4bfe..f84995643d 100644 --- a/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb index aa90066de8..025271c90b 100644 --- a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb +++ b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb index 4774c63625..46a5db5d00 100644 --- a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb index c8d608145e..e09b7d7128 100644 --- a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb index e9c753506d..433ec7e3b7 100644 --- a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb index cb0f244915..0be8df4a6a 100644 --- a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Adam Huffman # The Francis Crick Institute # Elements derived from work by Pablo Escobar diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb index ef981bb4df..fccc02c38a 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index e13659096e..e6d5d57368 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index 7ab215e130..9b88858f90 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb index 256925f8ab..649ae523d5 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb b/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb index bff321b4b2..7ca6f969a4 100644 --- a/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 87c8b17b1f..a27e4ffe9f 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index 7047839f2d..fcd0c73edf 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index 96e39f3ada..a78726d466 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb index 13a13c28d8..6682ecef20 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb index fdcf4609af..4002011eea 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb index 6a4c7c8893..59b48a2d38 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb index 31e12db3cc..ef13aa622d 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index 273a8c9d5f..598a5a64ee 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index 1bb43bc486..1c9d77935a 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index 58c91d09bc..80d940898f 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb index 6602e3fb19..f8f47b4abc 100644 --- a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb index 56a88f540c..e9f53eb87d 100644 --- a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb index fb05915a84..b2be7d9ff5 100644 --- a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb index 1bc0838af6..d385b5af30 100644 --- a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb index e58c648eee..f6a3fa5bda 100644 --- a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb index 933177a5af..12a460e953 100644 --- a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index d17113cb06..ef1067a4f7 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 6c053969c2..09bfc070e6 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb index f361a2932f..2631c95531 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb index 777c4695fd..9995450154 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb index 61250ef0ab..3f9dfdbbef 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb index d0c5c529db..73698fba89 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb index 8eacf467e7..cabd7636da 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb index 940cf3e83b..1dc98bc56e 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb index 9bf8366459..470433544b 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb index a9ff827237..1040eaec79 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb index e4df9a5cd4..701ac12d5c 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb index 8ece8f5082..3cb349ff14 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb index 058a25ffb3..0742f88efd 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb index f174be96fd..98cd4d01ec 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb index 54389e3415..4bec0e9960 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb index bcb04e7841..f467619905 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb index 691495f52f..0067d98017 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb index 72c77d6685..1930c1a1fc 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb index 60a507ddb8..ca8a738432 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb index 617fb03523..072b3e15a7 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb index 77ceaa2d9a..2730435062 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb index 92d511ac9c..742f32c7b6 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb index 7fa10b2782..99068e7f7b 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb index 3097f4cb0e..727f9c3f6c 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb index dc884fc260..f733c9124c 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb index 0ef2b03e67..0a75781a62 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb index 1c877d7045..35000996fb 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb index daeffdca98..5428307bd7 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb index a4d8935beb..b15496c3c9 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index b11e19a831..af111599e9 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb index abf5bbc277..37e86398d4 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb index 607bdc3f75..e7dbf65423 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index b4bf60ef3c..c8e5168447 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index 1ff272d5d5..efcd1039a6 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb index 01beb09931..b07eebeedb 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb index 26ed84e0ca..39826e3412 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb index 5320b4aa4c..fc4eee291e 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index 0a78e38ade..fcdbb10aad 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb index eb591f01b3..c1e9a74c6f 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb index 12dba48bf0..a71841771b 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb index ee452fb08e..5a93a730dc 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb index d50dab2154..cbd3a83974 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb index 6a2ab2df29..c6cc202fed 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb index 34e2fdbcea..c859d761df 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb index 2f3c2cf421..4c1cdfb922 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb index 831526692c..2b97f66bf4 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb index 3d6eb22e24..47ba7c137c 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb index 60c9ce8691..6e57763759 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb index 341f324efb..b3e56a6986 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb b/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb index 4f583c01b1..d76e3051fb 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb index 3b724d990f..2e24f54ef8 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb index d4318573b4..41a3d0f3c9 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb index 335f79d16b..7bcec339f4 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb index d34174340c..d26e10aab3 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb index c408bf08bd..51d2029f8b 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb index ed69d393e3..fa31b8119c 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb index 33c2f06dff..547084c491 100644 --- a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb index 69dec5c347..bb8c2ce071 100644 --- a/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors:: Stephane Thiell ## easyblock = 'Binary' diff --git a/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb index 7960265e87..28cec1fdb8 100644 --- a/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors:: Stephane Thiell ## easyblock = 'Binary' diff --git a/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb b/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb index 665ae52c04..ce8b6a310c 100644 --- a/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb index a3f69b41df..4ce9f6acc1 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb index 5d277564d7..663098d7ea 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index 6ad4131d3d..abf2f2f348 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index 7dfa97e510..5fdc97ba25 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb index d485c2eb57..5520734983 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index c548c0f167..beb87afa42 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb index cbf18980bc..591c1a1cfb 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb index b5babf4529..aedb5208f2 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb index e76514b4cc..3aaed28371 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb index e1ffffe615..b212b2e2ef 100644 --- a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb index 795cc4f409..a0d4aaa3ee 100644 --- a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index 4ba60f4784..ed87db5729 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb index 48f0570291..e3744fc95a 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb index f50e7519a2..381266ea15 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb b/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb index 4acb86b021..17487e1283 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb index bb1e979e80..ca20f00b88 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb b/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb index c1c3137a73..7f1635e8a8 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb index 1c4f9ab85d..31449b54e7 100644 --- a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb index 37c50aa1df..8aa84dce9f 100644 --- a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb index fef4a83c9e..3ec9dad849 100644 --- a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb +++ b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb b/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb index 32e6adc9b7..6c18c7665d 100644 --- a/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb b/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb index 9a71ee57a7..d018f814f2 100644 --- a/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb +++ b/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb index 3dbf1f6dcc..7d60edd787 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb index 3a9a5a29e9..5b4efc33f6 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb index 8d5a6d2eb6..26b293a777 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb index 136c6e53e0..1c0a984949 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli , diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb index 0a3b48db5b..c6adbf0428 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb b/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb index 1ed4041bd8..de9f5cdd55 100644 --- a/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb b/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb index b01bff9fa6..95b77ff16a 100644 --- a/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb +++ b/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index 1cdadae78c..ba3147aeda 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index 6807550e34..e1d9097357 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb index 59d3a92f69..d91b5c16d2 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb index cc4ff83fdd..e37d705eb5 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb index 463e126a1a..e5306a0264 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb index 0f000df55c..a8599a4532 100644 --- a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb index 8633986686..b72be2600b 100644 --- a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb index 30f8eb2395..00f55ae5a3 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb index 34a1760e0e..f7686d4769 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb index 968d0aa66a..76fc53fbf0 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb index 4c530e2669..200a9f51d1 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb index 8073931ffc..3cf2db1934 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb index 324f2cd7f8..f00ad2c895 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb index 67b8275d1e..6f79ab820c 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb index bcb1e2a0d1..9de59c679b 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb index 7b1bb021f3..f1ed8cc4b8 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb index 0bd9d6514d..cfe024f452 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb index 07a9a99e42..b01ce62b7f 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb index 973a23b9d2..6cdd113ef0 100644 --- a/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli diff --git a/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb b/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb index aabbb0dc24..8a33b15619 100644 --- a/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb b/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb index f5a5940d0d..6e4a28d4a2 100644 --- a/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb index beddc1be80..cb8631f828 100644 --- a/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb index 2ee0e32243..dfae3001aa 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb index 3c4e95c7ce..f0201e1312 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb index bca12c0034..a1bd0d68a7 100644 --- a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb index 9f45199e95..7c9fc74d13 100644 --- a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb +++ b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb index fb465f5c89..f30e2624cc 100644 --- a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb index c8749eca4a..105ca94d20 100644 --- a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Mazur # Research IT # Biozentrum, University of Basel diff --git a/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb index 30ff748dc8..008ed299aa 100644 --- a/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 51aeabb7ca..36bbf7c9f6 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb index 328b12d5a9..af29a1b6dd 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb index 992e13df88..0bee14ad36 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb index 0d39a830f0..a32f597303 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb index f40c0f4c4b..aa50b0c60d 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb index a3811f7d21..afceaf85fc 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb index b495a5ba45..a3cbafa68a 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb index f8e50daad2..52a8b8d0db 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb index 8afd4b1225..95b12ce511 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb index d5c9f991a7..12cb80c0d5 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb index 624f14ed18..ef54c7fce2 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb index 160f3b3a15..829a039d16 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb index e283bd562a..93e0a90956 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb index f8e2358b4a..4538b1fdca 100644 --- a/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 3810b2de94..3fc50c7310 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index fc4fbe41bc..62379f0f87 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb b/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb index cc1d205d40..2b1fc2a612 100644 --- a/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb +++ b/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/picard/picard-2.1.0.eb b/easybuild/easyconfigs/p/picard/picard-2.1.0.eb index 702287f8f6..9cc6b0c56a 100644 --- a/easybuild/easyconfigs/p/picard/picard-2.1.0.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.1.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb index 9f34b89624..513a7c2b79 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb index e3e7f189b1..594f9b1a27 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb index a50f50774e..6bf9fd86a2 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb index 8790ec7dca..0a2b15f59b 100755 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb b/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb index 4b9209b380..b1a1d1feb4 100644 --- a/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb +++ b/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb index 16a64ab3be..0a472e9d66 100644 --- a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb index 8514e49d95..d677851e09 100644 --- a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index e4973548b5..91fe68d23d 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index 1e12105e71..5c02ce39e5 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb index d7d22ad5ae..7f1a2331ac 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb index dd4462802c..80e5bb60d4 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb index d55bca8237..7542264fa7 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb index 859f2adbb7..eac6deabda 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 1fd62ac72d..525c7dcda5 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index ff4020095b..60eaccfc47 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb index 4ff67a0efb..642eea5ef8 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index 2155ac1e76..83c1690c1c 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index 03f3c66bab..23460531f8 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb index d0bbd7da76..2500753cc5 100644 --- a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb index d3a31d723c..2d60c20928 100644 --- a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb +++ b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb index 8df3ba88af..0e7c072381 100644 --- a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb +++ b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb b/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb index 462568a58d..99b121a0e8 100644 --- a/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb +++ b/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb index 764e0a5654..a2dd96fcb9 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb index 67667d2f43..0e88376e1b 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb index 515ad4d74a..de39a6a664 100644 --- a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb index ebe8bfa5d5..cbe0f89b48 100644 --- a/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb b/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb index 5b2154b146..7752f26f31 100644 --- a/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb +++ b/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Forschungszentrum Juelich GmbH # Authors:: Damian Alvarez diff --git a/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb b/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb index 3c539b01d1..e6e619d7ae 100644 --- a/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb +++ b/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb b/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb index f518617128..44c08dffd3 100644 --- a/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb +++ b/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 073affc93b..41c9a41b52 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index 5b8825becb..cb95f09db1 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index e632ad1cd5..c3c62371e3 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index d1a3148379..4feaa86295 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb index 37118ac1e1..fe530c9987 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb index ffeec869d8..6d55792df5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index f6766acbd2..143b4f0e11 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb index 805874583a..ec9e8200a5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb index 3835083700..e36e28d9bb 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb index be9360b7e5..a99016b990 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb index 598ba6e51e..e1dd81f160 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb index 97a147d8ec..b93365bdd7 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb index e3ff7301d8..ce7c10f8f2 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb index 2896876819..09d30b179c 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb index 739c632246..303f3a583d 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb index 4ff251eb73..63b113948c 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb index 96d3b95f0f..40b271c59e 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb index d869d21007..20c0daa2e9 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb index a7026c36d0..af67f0ad29 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb index 7fa65122da..1fcd04d5c5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb index 91ca187c34..8a9d0ec272 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb index cf342e2224..aaae3bc65c 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb index ad73efb9d9..1d3b8759e6 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb index 340f9547b8..becb1e33df 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb index f620000661..a590f0e5c5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb index 3167310f24..5fc351ad68 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb index 86a737bc61..a9362a745f 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb index cd48ea8cde..1cb0955d19 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb index 07e6c5020c..ae85c24427 100755 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb index d732b448eb..ec8b73d725 100644 --- a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb index 88fe827b03..607082a502 100644 --- a/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index cd91fac4e4..1d6583cd4c 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb b/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb index 9d089f04eb..e43bffbbb4 100644 --- a/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb b/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb index f2424bbea4..8b988dc0fd 100644 --- a/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb +++ b/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb index 5c52477972..08978cbb4b 100644 --- a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb index e773779617..89441506e0 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb index a093e042cb..ca3d9eb8ab 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb index 1c00d4b38b..d9d11099a3 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb index 8dd41bb2de..37b3f1f4e7 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb index 49346a9d1c..9053298580 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb index e61810f5fd..c121f5bccb 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb index eed3ec9cee..472bc669ce 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb index 517317038b..4370af06f2 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb index b2e1479cba..fc5e6d4e1f 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb index 0ac8c1861d..8d523f3226 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb index b3dda16325..09c013815d 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb index dbc48b8044..a247773edd 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb index 57997a86bf..f0abfcf40e 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb index be020214d2..9f50c74569 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb index 9f5fa19c24..2e69e76a1a 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb index c113a20dd9..cea8cbea9c 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index ed0395223c..07bc8cff7a 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index 16d05cf341..7d14bea6a9 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb index 67f7cd27da..8734a7daed 100644 --- a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb +++ b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb index 05651770f2..f288d7f917 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb index 0ce4a98f03..762c7d68fd 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb index ab6bd52347..672b4b6174 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb index 5eb12170f6..36652b20f0 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb index 6e5c9aeb32..5d56e586a2 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb index b8ae8d0ad8..50ca4cd509 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb index df712d6830..46422756f7 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb index af3845c60d..52377a3fe1 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb index a92f27ffac..00831a4e1c 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb index c435d47a74..17f00411a9 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb index 212dfd1d75..16c91c0d28 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb index c8632b48d5..1d32b0c2a3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb index f7ba78e654..f9639f1cf8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb index ee0989cdf4..e48edbbcf7 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb index ec5703f27d..2bfe96771a 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb index 1c9912537c..c95b85d4e3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index de897a790e..6e1bb042c8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb index e6b0322891..701c924942 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb index cb84023340..55a1ec7a89 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb index 41b5a58bd2..d5d4a80684 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index e74d6f7a39..f3308cf41c 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index 30d45082a1..e3447aee6b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index c08623a5a5..f65ec4dae6 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index 05b5ca95c1..80c5606194 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb index 15a228e4cf..2a4b96094a 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb index 87526d7754..8ce08d273d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb index 0e3d5b0943..9fe38bf12a 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb index 3cdb5e9a31..5a806bef03 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb index c9bee3d1d5..0d4572d689 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb index 2b1f98a6ac..e01c868906 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb index 86716967ff..7fb046898e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb index 70270519d3..8738842f40 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb index 5c38e72b1a..94e236ef73 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb index 0a07713fbb..db742635b8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb index 72f8da9d34..6cd5fb9e4f 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb index ac855e7cba..883edbcbca 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb index f0ed15f86c..00aa9db433 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb index 27cd84d7ec..77933d168b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb index ed00f7b981..53c285b780 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb index 5e77859d07..bc6c9dd40e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb index a8d05d1f18..2916ae6c7e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb index b3cfb08afd..fb622bfe69 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb index d4af19e4fa..55e1cd7d9f 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb index 763de183e3..31dbee8c48 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb index 6946daaee7..c93baeda44 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb index ee10abf948..53e7f6572d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb index f5e96601f1..3dcf095ade 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb index 8c66a0ef4c..dd707477c9 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb index 408f74829a..9084d936c8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb index 5c92bc8136..2eb44c755d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb index 5c86155323..bb425e87a7 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb index 8902612f46..f7d80fd057 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb index 4b9cea2422..55a3d892fc 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb index d75861cbb6..b694c4fcaa 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb index 177a74a0fb..28138bf968 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb index 885ab346a9..ecce43f756 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb index 46583c5246..21da189572 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb index c1a72bbbe4..fb1547876e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb index 68f9f01974..3de2d7ff50 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb index fc325c12fd..cfbdcb45e7 100644 --- a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb index 54156d4303..263ce2d19f 100644 --- a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb index 0e8750aa56..c7d58c5217 100644 --- a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb +++ b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb index ea1f495c8a..24b10cedf9 100644 --- a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb +++ b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb index c87beb9409..4b19365503 100644 --- a/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb index c819f307db..851afee495 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb index 04188b3f1a..c464f7f180 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb index 457ab933f7..3b0c1e3f28 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb index b4f28e006e..ce729a34b0 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb index acf5436cbe..6147b68e4b 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb index 43cc47b2aa..47cc2f8fb8 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb index d8c6f0be04..6655aaf699 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb index 05c3e56c2f..fdff081070 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb index 7bb56d5efd..02ac65a9a0 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb b/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb index 8b68d940d5..aaa111b447 100644 --- a/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb +++ b/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb index 55d127b2f7..9c891ad200 100644 --- a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb index 250c8ea829..f768f2c53c 100644 --- a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb index df0333c95e..26a76a0f44 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb index 137bacee9c..3f22891997 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb b/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb index 91b0941367..c70a882623 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb b/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb index 5df9e5efff..65fe9f43f3 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb index 8a86868303..31c53447fc 100644 --- a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb index a2b58989a1..1cbfd0027a 100644 --- a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb index c0dc9e45f8..e80e2daca5 100644 --- a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb b/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb index 1b943d4062..a54e53ac82 100644 --- a/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb +++ b/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb index d894a7f03a..1d596bb25f 100644 --- a/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb index 86ba1ed78f..5baf4c3200 100644 --- a/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb index ae2145d3df..e171a32650 100644 --- a/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 University of Geneva Switzerland # Authors:: Yann Sagon diff --git a/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb b/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb index a71ba0bca6..08b010527a 100644 --- a/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb b/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb index bb975b50f8..ba655d3a43 100644 --- a/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb b/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb index 6af29bdb8b..4a5290e878 100644 --- a/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index df639eb5dc..ab80ccc5bd 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 43fedd4e90..4a0685460a 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb index f2c6a5db74..0d9f6439b2 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb index 69634c30e6..6f1084f664 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb index 2476496f2d..0d4e070e86 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb index d1eb27f7fe..3924753a79 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb index 612c514399..ca748e8873 100644 --- a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb index e525a015c8..3ea35d4e6e 100644 --- a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb index ecdac2f7d2..baebc0d989 100644 --- a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb b/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb index 5c35b43fcc..3f53f0997a 100644 --- a/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb index 0c7b7b159e..beef8b39ec 100644 --- a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb index 3f36bab3c9..09a2f081e9 100644 --- a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb index a9245a0b76..beeb661537 100644 --- a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb b/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb index a2500b9e04..bc93dbaa1d 100644 --- a/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb +++ b/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb index 89547eb928..51eeeb8491 100644 --- a/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb b/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb index 88fc3d4707..306703a33f 100644 --- a/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb +++ b/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb b/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb index b3d358e4a3..adcf73dd1b 100644 --- a/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb +++ b/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb b/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb index e91ebd2437..004ae31693 100644 --- a/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb b/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb index f056af2b4f..56b9997a88 100644 --- a/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb +++ b/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb b/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb index 72a246892c..211ff82a35 100644 --- a/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index c502d5385e..e97300a69c 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb index c6409b2a07..3ffa16eea4 100644 --- a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb index 69b3b4ca40..d39813bb2e 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb index 20133db903..7791f62bfc 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Author:: Thekla Loizou diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index af40f4958d..e759c8ef98 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb index 063b42af9e..febb5f6fbb 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb index d99d70b100..43d3b55138 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb index 6743572399..63c44a4d0f 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index 0136815261..22225c98c3 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index dff35b1d3f..c3104a01d2 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index 5890c30330..30a6d4d9a9 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index 60dbbd04a5..900fa70d9e 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb index f7aede356f..41077a3e98 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb index 3bdcb05552..2dd3fe0d6e 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb index bf3b1885b2..e3d8f194e2 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb index f3be80ad62..f3a9590faf 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb index edea937fc8..2994b54774 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb index 7af5c3b6cd..b17b02345e 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb index 69f8803b05..2a37a8ab13 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb b/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb index 091f914cb3..bcb8cdfed4 100644 --- a/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb index 1f448f04b9..821333d6ef 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb index 30e64b353f..014e8ca411 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb index 181142b3db..b4e2affc99 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb index e138adfe4c..6169c8b9f9 100644 --- a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb index af291cd25c..beb5e691d0 100644 --- a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb +++ b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb index ef8197538d..6524a38488 100644 --- a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb +++ b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb index bf01430fff..09047308c7 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb index 57a30b1d87..b79551e930 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb index 558feb7579..79fccb1726 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb index 4b5f7237ff..20e7328d6b 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb index a414135707..a3d8189e6b 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb index 5e7647f183..2997563ac9 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb index 432a9ad37d..7adcf86b00 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb index 648d6836c1..4cfdeaa84c 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb index 747d099188..ba0c2dc9f5 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb index ef7cef982f..a1e7c5f53c 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb index 4a02bab4b4..3f9f04e15c 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb index 1413bb1d34..7522e28d25 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb index 72d80a88dd..2ab471b817 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb index 6769cda969..638cd3928b 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb index 13138db3b0..bec670c6aa 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb index 39dc1241a0..6aff879dc7 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb index e773e384b2..432d91c019 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb index 964a50f27f..4cb77bfe4a 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb index efdb4ae86f..b02471d463 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb index a1f9ee01f4..72be70a029 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb index ae9bb8dae3..318c851243 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb index 0e89a4b4d6..70717c12c1 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb index 47c30351f2..fbb9094225 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb index 1350a7b674..d9afc1fbcd 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb index 26093f8c38..9ba6154d14 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb index 9d1e642f25..c64bd42cd9 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb index c7db740277..a5698a5603 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb index 1213968867..46e460924a 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb index 0a12c2e817..d984b53e5f 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb index 9f1d001bfa..08f1cb8b26 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb b/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb index 367fff5696..ecaa08a980 100644 --- a/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb +++ b/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb index 54be12bcef..2f45c3f95b 100644 --- a/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors:: Stephane Thiell ## name = 'VMD' diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb index 8849734f1b..93686e2ec1 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index 45d8b25c17..9bb845d1ba 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb index 71edba0d68..053267f953 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb index 94b031902b..4bb971d12b 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb index e549b2e963..8128b35ee7 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb index d63c30f413..164e61a3e9 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb index ce85c69cbd..ed12cc491a 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb index ff2f4a0f63..748919048a 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb index e0221778a4..dffb09bfb6 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index 577f4846d8..f191980d63 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb index 85c8901493..920b6b2d14 100644 --- a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb +++ b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb index a25a9d20e8..d365513d88 100644 --- a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb +++ b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb b/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb index 6a97299365..17cc603f5a 100644 --- a/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb +++ b/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb b/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb index 8c1fc2104f..55d368233c 100644 --- a/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb b/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb index 88844689a5..afd1980045 100644 --- a/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb b/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb index dd6c6f31b0..b1573bf27c 100644 --- a/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman, based on initial work by Jordi Blasco # The Francis Crick Institute diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb index 8e5bf1c81c..1a83b16bd6 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb index 7fff5ef5b5..fab2964040 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb index e2ba08da33..310c71d1cf 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb index 24b79e8841..df2799a1c3 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb index 7c27a7683f..99932f6b56 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb index 8457ee4903..41695b9d6e 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb index ad56fb1790..e2cb044179 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb index d05f4f9c7a..0c9debe597 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb index 52c0ab85db..7fc70475a3 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb index fe2df81ad0..8ee19aee56 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb index c23584dddd..fe1e76769e 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb index 19b58c6e52..8e2cfba9b5 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index 45a8cbb1a5..924f3ce2cc 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index fafae9335e..cf8e038130 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index 29c51c1030..b1d2ca1c12 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb index 3214395e25..dc5c973772 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb index ec625ff6c6..4f26e4b2b5 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb index fc2a6f62b8..1232bbbdcc 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb index 824152274f..9e67a4c535 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb index 674a6d44d5..f0f30967f2 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb index 120e8225ae..51976a2e40 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb @@ -22,7 +22,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb index 5c807c96fb..5d302a4553 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,7 +23,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb index 368c166390..1243b5ec82 100644 --- a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb @@ -3,7 +3,7 @@ easyblock = 'VersionIndependentPythonPackage' name = 'vsc-mympirun' version = '3.2.1' -homepage = 'http://github.com/hpcugent/vsc-mympirun/' +homepage = 'https://github.com/hpcugent/vsc-mympirun/' description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" # we build this to work with every python version diff --git a/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb b/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb index f8de4a4721..9bf6597cd2 100644 --- a/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb b/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb index c6a5e3fa14..94ae40e0cd 100644 --- a/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb b/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb index 96ac9d6530..a06d973254 100644 --- a/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb index e27e4f7760..e4cd7e32e8 100644 --- a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb index cb26524e7f..e26d3170c2 100644 --- a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index 71553532b1..fe7a81ee6d 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index b2e2623f1f..e5c33bcbbd 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb b/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb index b0bb280f07..dfff31c3a7 100644 --- a/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb +++ b/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb index 93c328cff6..ff437b5dba 100644 --- a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb index ccad95cd1d..7f314736fb 100644 --- a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch b/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch index 3090e4e0ea..03b241cdc6 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch @@ -1,5 +1,5 @@ include two 5.1.2aplha symbols that were included in XZ 5.1.2alpha which are required by the 'rpm' command on CentOS 7.x -see also https://github.com/hpcugent/easybuild-easyconfigs/issues/4036 +see also https://github.com/easybuilders/easybuild-easyconfigs/issues/4036 original patch: xz-5.2.2-compat-libs.patch, cfr. https://git.centos.org/patch/rpms!xz.git/3f035cee1da9f864609885e5ef2a1be77cd37eee --- src/liblzma/liblzma.map.orig 2015-09-29 12:57:36.000000000 +0200 diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb index 8cae54960c..634b4f040d 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb index 19442cc19e..a9b0150761 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index 6ed4579c34..4a89685079 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index a98dbc5915..a67685c36b 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb index 90c83cfb4e..83c2304c3f 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb index fd9ab5e210..5d91905b00 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb index d40e39150a..2b3b53fc13 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb index bae739cbfa..884d55d98d 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb index b2b7c412d9..54da1bfc1c 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb index 78f408a971..190f07dd2b 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb index af77be599d..053cfe39f7 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb index b5dae68924..31172f8c40 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb index bd4bc5d66f..a838254d15 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb index f0db7e8256..89a5a1ab38 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb index 6b82f0fc24..66f5997d8e 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index d756317c6c..aeebd7e248 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index 960ac2460a..f13e061e4e 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/setup.py b/setup.py index 6a0698539f..af2eb6baaf 100644 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -109,7 +109,7 @@ that specify the build parameters for software packages (version, compiler toolc versions, etc.).""", license = "GPLv2", keywords = "software build building installation installing compilation HPC scientific", - url = "http://hpcugent.github.com/easybuild", + url = "http://easybuilders.github.io/easybuild/", data_files = get_data_files(), long_description = read("README.rst"), classifiers = [ diff --git a/test/__init__.py b/test/__init__.py index e44e0c6e58..4c16c11e57 100644 --- a/test/__init__.py +++ b/test/__init__.py @@ -8,7 +8,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 993e9395ba..6e9ae84a7b 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -8,7 +8,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/test/easyconfigs/styletests.py b/test/easyconfigs/styletests.py index 2ea259071e..7baae28007 100644 --- a/test/easyconfigs/styletests.py +++ b/test/easyconfigs/styletests.py @@ -8,7 +8,7 @@ # the Hercules foundation (http://www.herculesstichting.be/in_English) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/test/easyconfigs/suite.py b/test/easyconfigs/suite.py index 56d7f05b41..a8806bf1ae 100644 --- a/test/easyconfigs/suite.py +++ b/test/easyconfigs/suite.py @@ -9,7 +9,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by -- GitLab From 016235a044cf8a0fb906ad27bfe398d2bf69b33d Mon Sep 17 00:00:00 2001 From: zao Date: Wed, 5 Jul 2017 19:02:50 +0200 Subject: [PATCH 046/845] Credit upstream, use %(version)s format --- easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch | 3 +++ easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb | 2 +- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch index 8b5e6acbfb..494ae7c00e 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch @@ -1,3 +1,6 @@ +# GCC 7 errors on comparing a pointer and an integer, code means to test +# first byte. This is fixed in 6.4.0 and onward by SVN revision 239971. +# Upstream credit: Kirill Yukhin diff -ru gcc-6.3.0-orig/gcc/ubsan.c gcc-6.3.0/gcc/ubsan.c --- gcc-6.3.0-orig/gcc/ubsan.c 2016-12-07 23:39:29.000000000 +0100 +++ gcc-6.3.0/gcc/ubsan.c 2017-07-05 08:57:03.297566616 +0200 diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb index b95420541e..7c5c5cfbf2 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb @@ -37,7 +37,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20161215.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), 'GCCcore-6.2.0-fix-find-isl.patch', - 'GCCcore-6.3.0-fix-ubsan.patch', + 'GCCcore-%(version)s-fix-ubsan.patch', ] checksums = [ -- GitLab From 588b5b4167171cc967bd9299600b007c07b999d3 Mon Sep 17 00:00:00 2001 From: zao Date: Wed, 5 Jul 2017 20:34:07 +0200 Subject: [PATCH 047/845] Generalize ubsan patch for earlier 6.x releases --- easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb | 1 + easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb | 1 + easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb | 2 +- ...CCcore-6.3.0-fix-ubsan.patch => GCCcore-6.x-fix-ubsan.patch} | 1 + 4 files changed, 4 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/g/GCCcore/{GCCcore-6.3.0-fix-ubsan.patch => GCCcore-6.x-fix-ubsan.patch} (97%) diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb index b3173aaf56..0423a2a006 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb @@ -38,6 +38,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20160804.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), ('%s-%s_fix-find-isl.patch' % (name, version)), + 'GCCcore-6.x-fix-ubsan.patch', ] checksums = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb index 8bf2b22931..2ac9bf8b09 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb @@ -37,6 +37,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20160804.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), '%(name)s-%(version)s-fix-find-isl.patch', + 'GCCcore-6.x-fix-ubsan.patch', ] checksums = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb index 7c5c5cfbf2..96befaf7f0 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb @@ -37,7 +37,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20161215.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), 'GCCcore-6.2.0-fix-find-isl.patch', - 'GCCcore-%(version)s-fix-ubsan.patch', + 'GCCcore-6.x-fix-ubsan.patch', ] checksums = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.x-fix-ubsan.patch similarity index 97% rename from easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch rename to easybuild/easyconfigs/g/GCCcore/GCCcore-6.x-fix-ubsan.patch index 494ae7c00e..1c8e22152a 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0-fix-ubsan.patch +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.x-fix-ubsan.patch @@ -1,5 +1,6 @@ # GCC 7 errors on comparing a pointer and an integer, code means to test # first byte. This is fixed in 6.4.0 and onward by SVN revision 239971. +# Affects 6.1-6.3. # Upstream credit: Kirill Yukhin diff -ru gcc-6.3.0-orig/gcc/ubsan.c gcc-6.3.0/gcc/ubsan.c --- gcc-6.3.0-orig/gcc/ubsan.c 2016-12-07 23:39:29.000000000 +0100 -- GitLab From 6c51593a0c5e2a2f21afdb672b185c0a337eec27 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 5 Jul 2017 21:30:22 +0200 Subject: [PATCH 048/845] add SHA256 checksum in binutils-2.28-GCCcore-6.4.0.eb --- easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb index b22b7d16ba..b6486c7dfb 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb @@ -8,6 +8,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] +checksums = ['cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'] builddependencies = [ ('flex', '2.6.4'), -- GitLab From ddec90ce3c0d1175651948bcd4aeed77b26edf2f Mon Sep 17 00:00:00 2001 From: "Nathan S. Watson-Haigh" Date: Thu, 6 Jul 2017 11:35:25 +0930 Subject: [PATCH 049/845] Added easyconfig for ngmlr-0.2.6-foss-2015b --- .../n/ngmlr/ngmlr-0.2.6-foss-2015b.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb diff --git a/easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb b/easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb new file mode 100644 index 0000000000..a5b9e6ff70 --- /dev/null +++ b/easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb @@ -0,0 +1,26 @@ +easyblock = 'CMakeMake' + +name = 'ngmlr' +version = '0.2.6' + +homepage = 'https://github.com/philres/ngmlr' +description = """Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a + reference genome with a focus on reads that span structural variations.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/philres/ngmlr/archive'] + +builddependencies = [('CMake', '3.4.1')] + +dependencies = [ + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/ngmlr'], + 'dirs': [''] +} + +moduleclass = 'bio' -- GitLab From b7e29f64c2f8e97990239584aaee5887910ccdae Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 08:34:49 +0200 Subject: [PATCH 050/845] replace wiki link with readthedocs link --- RELEASE_NOTES | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 1dcd904d75..904813d080 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -749,7 +749,7 @@ feature + bugfix release Xmipp (#1489) - added easyconfigs for new (Cray-specific) toolchains (#1538): CrayGNU, CrayIntel, CrayCCE - initially supported software (using CrayGNU toolchains): CP2K, GROMACS, HPL, Python + numpy/scipy, WRF (#1558) - - see also https://github.com/easybuilders/easybuild/wiki/EasyBuild-on-Cray + - see also http://easybuild.readthedocs.io/en/latest/Cray-support.html - added new easyconfigs for existing toolchains: goolf/1.5.16, intel/2014.06 - added additional easyconfigs for various supported software packages: version updates, different toolchains, ... including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3 and v3.2.0, PETSc/SLEPc v3.5.3, WIEN2k v14.1 -- GitLab From aff9c11faf9f40979971076197f79b1ad23b72c7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 08:51:20 +0200 Subject: [PATCH 051/845] consistently use https:// for EasyBuild website URL --- README.rst | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb | 2 +- easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.0.109.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb | 2 +- .../i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb | 2 +- .../i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb | 2 +- .../i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb | 2 +- .../i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb | 2 +- .../i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- .../i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb | 2 +- .../i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- .../i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb | 2 +- .../i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- .../i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- .../i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb | 2 +- easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb | 2 +- .../i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb | 2 +- .../i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb | 2 +- .../i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb | 2 +- .../i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb | 2 +- .../i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb | 2 +- .../i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb | 2 +- .../i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb | 2 +- .../i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb | 2 +- .../i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb | 2 +- .../i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb | 2 +- .../impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb | 2 +- .../impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- .../impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- .../impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb | 2 +- .../i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb | 2 +- .../i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb | 2 +- .../i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb | 2 +- .../i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb | 2 +- .../i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- .../i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb | 2 +- .../i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb | 2 +- easybuild/easyconfigs/i/intel/intel-2016.00.eb | 2 +- easybuild/easyconfigs/i/intel/intel-2016.01.eb | 2 +- easybuild/easyconfigs/i/iompi/iompi-2017.01.eb | 2 +- easybuild/easyconfigs/i/iompi/iompi-2017a.eb | 2 +- setup.py | 2 +- 134 files changed, 134 insertions(+), 134 deletions(-) diff --git a/README.rst b/README.rst index ff6d26a0ab..be42964380 100644 --- a/README.rst +++ b/README.rst @@ -1,4 +1,4 @@ -.. image:: http://easybuilders.github.io/easybuild/images/easybuild_logo_small.png +.. image:: https://easybuilders.github.io/easybuild/images/easybuild_logo_small.png :align: center `EasyBuild `_ is a software build diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb index 819bcfdba2..9b67e77290 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb index c22351c6de..f6e48794a2 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb index 10e52177b1..f65e4d33b7 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.2' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb index b86dfbf810..b404084816 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.1.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb index a6804f4f58..6d0b6bbd58 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.10.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb index 23833e2836..09d7412e21 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.11.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb index 47f1a751e4..3e0b477551 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.11.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb index e4a27cb487..fda0eaa230 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.12.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb index eb82e53707..e8bc170959 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.12.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb index 5455bc671c..148881ec17 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.13.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb index bf7bef23ba..a573ff7efb 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.14.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb index bc94abbd43..017904a16a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.0" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb index 567d84626d..4b605cc474 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.1" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb index dc940ff5f3..71ca7c902d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.2" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb index 07b994c134..d694c3a975 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.0" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb index 063c0cae95..777f78e3ad 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.1" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb index ca54ce2b48..5c38c0a983 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.2" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb index 5ab2ef518b..ee0fb34daf 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.2.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb index 74208a9b9f..0249a90b8d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.3.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb index cf1ab671cb..58e8279a68 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.4.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb index 395394e677..1b589199e1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.5.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb index 673b37a447..95539b250f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.6.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb index d63e41ec85..3caeb8de82 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.7.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb index f5a9269b1f..63848ea26b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb index e18328251e..a99feae3bc 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb index 76df856dd7..f835d8df77 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.2' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb index d2e8a2944e..74d11b79a1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.9.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb index 24720fca1c..2fb2c7bbce 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "2.0.0" -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index 4a7b7be82f..b20ff4070b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.1.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb index 84afda8b48..1f6796bb5a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.1.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb index ce7e5bf141..e49097cb3f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.2.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb index 31548a1769..3e1199f516 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.3.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb index d7fe564a73..0f1a2dfaa8 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.4.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb index 89f2840b11..d04e3a4e31 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.5.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb index 5d5435bb7f..c7485aea5f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.6.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb index b09425b770..fcefd77778 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.7.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb index 2e50e9c4e7..ee8f725ccc 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb index d8d510a78c..5785d7ac7a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb index 2c33962b07..ef3430f3de 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.2' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb index 7ab918d84c..1660b8e4a1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.9.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb index c9a8f9fb2a..70b18de510 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb index 7fcaac8436..f26a42f001 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb index ab22452b62..f26040b3c7 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.2' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb index 7961017185..e385b6fbbe 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb index bb9b2572df..94e497613d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb index 7bf19cc08b..ce2ab0cb59 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.2' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb index 97d13804f9..3ee48d069a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.2.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb index ee42c1d6b9..176c9217f3 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.2.1' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb index 5d4ea9ca97..5f1753bce3 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.3.0' -homepage = 'http://easybuilders.github.io/easybuild' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb index 96e09e4442..3fe029f3bd 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb index 6f3261b9b3..5ca90df672 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb index 64e0d33ac6..acee6423cd 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.1.150' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb index 721567e03f..c51aeed69f 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb index 0cbfad31f7..9efd4f304a 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb index 2895d405cf..c834d93024 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb index 15866eea89..100faf7343 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb index dc7b23e0a2..0e2464f373 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb index 06ec2ed952..41ed689a72 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb index 126b6eb3e0..77118ae45d 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb index bada3a0811..362d477441 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb index 6d8d739d3b..55411b8971 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb index 4af351f8fe..fe66dc2742 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb index 6753c1145f..4bb42ab041 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb index 923d9700ec..cc24a9ab54 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb index b3ced2b66f..297fe04854 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb index f7d7ee5159..f2c485ee20 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb index fcdd6710aa..3683fdab6e 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb index d7cafce265..0401f8025e 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 41183af553..fdf3a88aa5 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb index e047e9f7b3..a77c406ff7 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb index de0d741a72..3fc87e0a0a 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb index 3ec7427089..d4e78567c7 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb index 87ed0a937d..577b228300 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = 'Toolchain' name = 'iccifort' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb index 255161f320..aabb1cd11e 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb index 479cec077d..d138aad0c3 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb index a01ea21032..9b68272441 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.1.150' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb index 4a5a9da050..ece99a7387 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb index 61a7a9cb99..5bba923e8f 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb index 67930d3ffb..856da5d488 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb index 189b6b9916..1204efb964 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb index bbc290ac69..52c45d2af4 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb index 994e8bb45e..b49a02c89a 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb index d03607c38d..8f58c81952 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb index 11f2e31d72..215324831e 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb index 7d3dc3b6f7..1d5cac3fad 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb index 57a86a76d8..44c8e6ecaa 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb index 8e46199a8e..476d9acb2b 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb index 3c4734b17b..7878168e2e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb index 9c1506b2e4..9510f7e46a 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb index e3b3a17989..08b9b3f507 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb index 2b5ee4fd1b..a8596d5825 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb index 3fa553dc7b..7ac8a1f5c1 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb index 5db059f41d..4df51c9895 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb index d6118a326e..843a2fdb37 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb index 1807df2103..cfdd91b0bf 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb index 96132c62bd..65c861bb3f 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb index daa347a40e..14c6d0426d 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb b/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb index b1196702a9..568c34ad3f 100644 --- a/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb +++ b/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpic' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb index c67f0e36d5..d58ab5dfd6 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.0.109' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb index 5f46cfbdc5..440d1741c0 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.1.150' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb index 41939dc99b..ecf070b29c 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb index 9ec0acc472..49091028d6 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb index f85a4efd37..d468fef58a 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb index 710968ace7..229575d9aa 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb index 8418178c3b..5cf1169219 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb index bf72302fc9..59e82c5910 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb index c3af772fef..71ce462a11 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb index d5a808222b..78c54328f4 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb index a138ed11d0..c5041e44d7 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb index 5981bc06f0..76e951f9af 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb index 2ec64feae2..5fdaf87f4c 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb index 105db4b7f3..8f2a455c2d 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb index bbf353b48c..1b5c22920c 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb index dc78fc3b80..470e9458e0 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb index 324695a571..a6925bd1bb 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb index 5c4c02adc2..96112a1923 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb index 35a62bb371..39fce39091 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb index 7c55fcf3e3..a8fce42a53 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb index 4222d6a26a..9f5485d56c 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb index fbace1b7ac..fc92127950 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb index 72c0998995..d09b33f679 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.1.109' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb index eddf864db7..137847dcf7 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.2.150' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb index b779e3185b..08aa97c8f6 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb index b05f10add0..a1e94bdfa1 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index a8d2a5e21e..3d597f449e 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb index 2886d91689..121e9258f2 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index da9923db0a..e74cd02b1b 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb index 2da07ac2d4..f3e312361a 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' diff --git a/easybuild/easyconfigs/i/intel/intel-2016.00.eb b/easybuild/easyconfigs/i/intel/intel-2016.00.eb index f4149f4027..5010692164 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.00.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.00.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'intel' diff --git a/easybuild/easyconfigs/i/intel/intel-2016.01.eb b/easybuild/easyconfigs/i/intel/intel-2016.01.eb index 1f12eaea94..bbcac55ebc 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.01.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'intel' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb index b648d9709a..cf97e1f426 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iompi' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017a.eb b/easybuild/easyconfigs/i/iompi/iompi-2017a.eb index c74e1212e9..f5e1679c27 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017a.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild/ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iompi' diff --git a/setup.py b/setup.py index af2eb6baaf..2ea811fb80 100644 --- a/setup.py +++ b/setup.py @@ -109,7 +109,7 @@ that specify the build parameters for software packages (version, compiler toolc versions, etc.).""", license = "GPLv2", keywords = "software build building installation installing compilation HPC scientific", - url = "http://easybuilders.github.io/easybuild/", + url = "https://easybuilders.github.io/easybuild/", data_files = get_data_files(), long_description = read("README.rst"), classifiers = [ -- GitLab From 24d6f4422383581d26a3d4c05fde35089356040f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 09:14:33 +0200 Subject: [PATCH 052/845] remove reference to 'hpcugent' in M4 easyconfig --- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb index 2a832cbb83..2aef3d06c6 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb @@ -18,7 +18,7 @@ checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] builddependencies = [('binutils', '2.28', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { -- GitLab From 64d67db1ecd019e8c6de4d68c90d257949cb76f1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 09:14:46 +0200 Subject: [PATCH 053/845] check for old GitHUb EasyBuild URLs in easyconfig tests --- test/easyconfigs/easyconfigs.py | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 6e9ae84a7b..2dac08069f 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -240,6 +240,15 @@ def template_easyconfig_test(self, spec): error_msg = "Found use of '$root', not compatible with modules in Lua syntax, use '%%(installdir)s' instead: %s" self.assertFalse(res, error_msg % res) + # make sure old GitHub urls for EasyBuild that include 'hpcugent' are no longer used + old_urls = [ + 'github.com/hpcugent/easybuild', + 'hpcugent.github.com/easybuild', + 'hpcugent.github.io/easybuild', + ] + for old_url in old_urls: + self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' not found in %s" % (old_url, spec)) + # make sure all patch files are available specdir = os.path.dirname(spec) specfn = os.path.basename(spec) -- GitLab From 5070365c634903f95e91f1367a7dd6cf00ac2c38 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 10:51:08 +0200 Subject: [PATCH 054/845] adding easyconfigs: yaff-1.1.3-intel-2017a-Python-2.7.13.eb --- .../yaff-1.1.3-intel-2017a-Python-2.7.13.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..16b4d6c331 --- /dev/null +++ b/easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'yaff' +version = '1.1.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/yaff/' +description = """Yaff stands for 'Yet another force field'. It is a pythonic force-field code.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/molmod/yaff/releases/download/%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['1e4ce10c19ed4338cb8ddee63beecadee4ecefcf1c12be90312ce29a6cbae116'] + +dependencies = [ + ('Python', '2.7.13'), + ('h5py', '2.7.0', versionsuffix), + ('molmod', '1.1', '-Python-%(pyver)s'), +] + +options = {'modulename': name} +runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc; " +runtest += "python setup.py build_ext -i; nosetests -v" + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'chem' -- GitLab From 0363b0fcf8b4fa4981b0d272c3a031f64c280518 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 12:43:32 +0200 Subject: [PATCH 055/845] adding easyconfigs: geopy-1.11.0-intel-2017a.eb --- .../g/geopy/geopy-1.11.0-intel-2017a.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb b/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb new file mode 100644 index 0000000000..d8e1943c56 --- /dev/null +++ b/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb @@ -0,0 +1,21 @@ +easyblock = 'PythonPackage' + +name = 'geopy' +version = '1.11.0' + +homepage = 'https://github.com/geopy/geopy' +description = "geopy is a Python 2 and 3 client for several popular geocoding web services." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '3.6.1')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' -- GitLab From a8411994093907b47826e22dcf1235a029b04099 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 6 Jul 2017 13:02:56 +0200 Subject: [PATCH 056/845] add missing versionsuffix to geopy easyconfig --- ...0-intel-2017a.eb => geopy-1.11.0-intel-2017a-Python-3.6.1.eb} | 1 + 1 file changed, 1 insertion(+) rename easybuild/easyconfigs/g/geopy/{geopy-1.11.0-intel-2017a.eb => geopy-1.11.0-intel-2017a-Python-3.6.1.eb} (92%) diff --git a/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb b/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a-Python-3.6.1.eb similarity index 92% rename from easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb rename to easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a-Python-3.6.1.eb index d8e1943c56..4b03e02aee 100644 --- a/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a.eb +++ b/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a-Python-3.6.1.eb @@ -2,6 +2,7 @@ easyblock = 'PythonPackage' name = 'geopy' version = '1.11.0' +versionsuffix = '-Python-%(pyver)s' homepage = 'https://github.com/geopy/geopy' description = "geopy is a Python 2 and 3 client for several popular geocoding web services." -- GitLab From a94c3c6691da037d785341e19c5377e077b362b1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Thu, 6 Jul 2017 13:33:24 +0200 Subject: [PATCH 057/845] Update EasyBuild URL --- easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb | 2 +- .../s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb | 2 +- easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb index ff9fe9e8d2..d5a896eea2 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb index a171f04582..1ef3760d15 100644 --- a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'CMakeMake' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb index 17d6caf922..c187512784 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild name = 'tbb' version = '2017_U5' -- GitLab From 070007f419368b29cbbeec96ab8549b4f0629b1e Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Thu, 6 Jul 2017 15:49:43 -0400 Subject: [PATCH 058/845] adding Bowtiew with GCCcore 5.4.0 --- .../b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb new file mode 100644 index 0000000000..f12c5655a0 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb @@ -0,0 +1,18 @@ +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +name = 'Bowtie' +version = '1.1.2' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. +It aligns short DNA sequences (reads) to the human genome. +""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +moduleclass = 'bio' -- GitLab From d02a28e898c32b15e69f03e684ccd17f6c1c5c0e Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Thu, 6 Jul 2017 15:53:16 -0400 Subject: [PATCH 059/845] adding BWA for GCCcore 5.4.0 --- .../b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb new file mode 100644 index 0000000000..ffaa2a351d --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'BWA' +version = '0.7.15' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] + +moduleclass = 'bio' -- GitLab From f64b4029c4d5f9271c40c771c690b86a6ec64857 Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Thu, 6 Jul 2017 16:40:25 -0400 Subject: [PATCH 060/845] making changes requested in PR https://github.com/easybuilders/easybuild-easyconfigs/pull/4822 --- easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb index ffaa2a351d..726ee69664 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos @@ -18,9 +18,9 @@ description = """Burrows-Wheeler Aligner (BWA) is an efficient program that alig relatively short nucleotide sequences against a long reference sequence such as the human genome.""" toolchain = {'name': 'GCCcore', 'version': '5.4.0'} -toolchainopts = {'optarch': True, 'pic': True} +toolchainopts = {'pic': True} -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/lh3/%(name)s/archive/'] moduleclass = 'bio' -- GitLab From 09f8c3ed6e282441d5177ee82c7770add890a395 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Fri, 7 Jul 2017 09:08:57 +0200 Subject: [PATCH 061/845] Add Boost 1.54.0 for foss-2016b --- .../Boost-1.54.0-foss-2016b-Python-2.7.12.eb | 31 +++++++++++++++++++ .../b/Boost/Boost-1.54.0_fix-allocator.patch | 13 ++++++++ .../Boost-1.54.0_fix-int64_t-support.patch | 16 ++++++++++ ...oost-1.54.0_fix-make_tuple-namespace.patch | 22 +++++++++++++ 4 files changed, 82 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..f2dba0b8a4 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'Boost' +version = '1.54.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = "Boost provides free peer-reviewed portable C++ source libraries." + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True, 'pic': True, 'cstd': 'c++0x'} + +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +source_urls = ['https://sourceforge.net/projects/%(namelower)s/files/%(namelower)s/%(version)s'] + +patches = [ + '%(name)s-%(version)s_fix-allocator.patch', + '%(name)s-%(version)s_fix-int64_t-support.patch', + '%(name)s-%(version)s_fix-make_tuple-namespace.patch', +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', '2.7.12'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch new file mode 100644 index 0000000000..d8417cd358 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch @@ -0,0 +1,13 @@ +* fix build error: No best alternative for libs/coroutine/build/allocator_sources +author: Paul Jähne +--- libs/coroutine/build/Jamfile.v2 ++++ libs/coroutine/build/Jamfile.v2 +@@ -40,7 +40,7 @@ + : detail/standard_stack_allocator_posix.cpp + ; + +-explicit yield_sources ; ++explicit allocator_sources ; + + lib boost_coroutine + : allocator_sources diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch new file mode 100644 index 0000000000..3f717263bf --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch @@ -0,0 +1,16 @@ +* fix build error: int64_t support +author: Paul Jähne +--- boost/cstdint.hpp ++++ boost/cstdint.hpp +@@ -41,7 +41,10 @@ + // so we disable use of stdint.h when GLIBC does not define __GLIBC_HAVE_LONG_LONG. + // See https://svn.boost.org/trac/boost/ticket/3548 and http://sources.redhat.com/bugzilla/show_bug.cgi?id=10990 + // +-#if defined(BOOST_HAS_STDINT_H) && (!defined(__GLIBC__) || defined(__GLIBC_HAVE_LONG_LONG)) ++#if defined(BOOST_HAS_STDINT_H) \ ++ && (!defined(__GLIBC__) \ ++ || defined(__GLIBC_HAVE_LONG_LONG) \ ++ || (defined(__GLIBC__) && ((__GLIBC__ > 2) || ((__GLIBC__ == 2) && (__GLIBC_MINOR__ >= 17))))) + + // The following #include is an implementation artifact; not part of interface. + # ifdef __hpux diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch new file mode 100644 index 0000000000..42226a8183 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch @@ -0,0 +1,22 @@ +* fix build error: could not convert 'std::make_tuple(_Elements&& ...) +author: Paul Jähne +--- libs/mpi/src/python/py_nonblocking.cpp ++++ libs/mpi/src/python/py_nonblocking.cpp +@@ -118,7 +118,7 @@ + pair result = + wait_any(requests.begin(), requests.end()); + +- return make_tuple( ++ return boost::python::make_tuple( + result.second->get_value_or_none(), + result.first, + distance(requests.begin(), result.second)); +@@ -134,7 +134,7 @@ + test_any(requests.begin(), requests.end()); + + if (result) +- return make_tuple( ++ return boost::python::make_tuple( + result->second->get_value_or_none(), + result->first, + distance(requests.begin(), result->second)); -- GitLab From 39932ee7b377ebe2d3a0ba170a0368a00de0d57b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Fri, 7 Jul 2017 09:20:36 +0200 Subject: [PATCH 062/845] Add Sailfish for foss-2016b with dependencies --- .../g/g2log/g2log-1.0-foss-2016b.eb | 33 ++++++++++ ...ailfish-0.10.1-foss-2016b-Python-2.7.12.eb | 40 ++++++++++++ ...lfish-0.10.1_skip-included-Jellyfish.patch | 64 +++++++++++++++++++ 3 files changed, 137 insertions(+) create mode 100644 easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb create mode 100644 easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb create mode 100644 easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch diff --git a/easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb b/easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb new file mode 100644 index 0000000000..d656235b6c --- /dev/null +++ b/easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'g2log' +version = '1.0' + +homepage = 'https://sites.google.com/site/kjellhedstrom2//g2log-efficient-background-io-processign-with-c11' +description = """g2log, efficient asynchronous logger using C++11""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://bitbucket.org/KjellKod/g2log/get/'] +sources = ['version-%(version)s.tar.gz'] + +checksums = ['2cd2d9cfa0cf71c80a546cde1a25f19f6b7fddf610f7cbb30a67bb81dadb7026'] + +preconfigopts = 'unzip ../3rdParty/gtest/gtest-1.6.0__stripped.zip -d ../3rdParty/gtest/ &&' +preinstallopts = 'mkdir %(installdir)s/lib && cp lib*.a %(installdir)s/lib ||' + +builddependencies = [ + ('CMake', '3.7.2'), +] + +start_dir = 'g2log' +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/liblib_g2logger.a', 'lib/liblib_activeobject.a'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..0b7cab53e1 --- /dev/null +++ b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'Sailfish' +version = '0.10.1' +versionsuffix = '-Python-2.7.12' + +homepage = 'http://www.cs.cmu.edu/~ckingsf/software/%(namelower)s/' +description = """Sailfish is a software tool that implements a novel, alignment-free algorithm for the estimation of + isoform abundances directly from a set of reference sequences and RNA-seq reads. """ + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/kingsfordgroup/%(namelower)s/archive/'] +sources = ['v%(version)s.tar.gz'] + +checksums = ['a0d6d944382f2e07ffbfd0371132588e2f22bb846ecfc3d3435ff3d81b30d6c6'] + +patches = ['%(name)s-%(version)s_skip-included-Jellyfish.patch'] + +builddependencies = [('CMake', '3.7.2')] + +dependencies = [ + ('Boost', '1.63.0', versionsuffix), + ('tbb', '2017_U5'), + ('Jellyfish', '2.2.6'), + ('g2log', '1.0'), +] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': [] +} + +# build fails otherwise +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch new file mode 100644 index 0000000000..6f8d75e098 --- /dev/null +++ b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch @@ -0,0 +1,64 @@ +* skip downloading and building of Jellyfish, since it's provided via EasyBuild already +* don't hardcode $CMAKE_CXX_FLAGS +author: Paul Jähne +--- CMakeLists.txt ++++ CMakeLists.txt +@@ -25,7 +25,7 @@ + + ## Set the standard required compile flags + # Nov 18th --- removed -DHAVE_CONFIG_H +-set (CMAKE_CXX_FLAGS "-pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type") ++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -L$ENV{EBROOTJELLYFISH}/lib -ljellyfish-2.0 -pthread -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type") + + ## + # OSX is strange (some might say, stupid in this regard). Deal with it's quirkines here. +@@ -287,23 +287,6 @@ + set(SUFFARRAY_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/external/install/include) + + +-message("Build system will fetch and build Jellyfish") +-message("==================================================================") +-ExternalProject_Add(libjellyfish +- DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external +- DOWNLOAD_COMMAND curl -k -L https://github.com/gmarcais/Jellyfish/releases/download/v2.2.3/jellyfish-2.2.3.tar.gz -o jellyfish-2.2.3.tgz && +- rm -fr jellyfish-2.2.3 && +- tar -xzvf jellyfish-2.2.3.tgz +- SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.3 +- INSTALL_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/install +- CONFIGURE_COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.3/configure --prefix= CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_COMMAND ${MAKE} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_IN_SOURCE 1 +- INSTALL_COMMAND make install && +- cp config.h /include/jellyfish-2.2.3/jellyfish/ && +- cp config.h /include/ +-) +- + find_package(TBB) + ## + # +--- src/CMakeLists.txt ++++ src/CMakeLists.txt +@@ -43,7 +43,6 @@ + ${GAT_SOURCE_DIR}/external/cereal/include + ${GAT_SOURCE_DIR}/external/install/include + ${GAT_SOURCE_DIR}/external/install/include/rapmap +-${GAT_SOURCE_DIR}/external/install/include/jellyfish-2.2.3 + ${ZLIB_INCLUDE_DIR} + ${TBB_INCLUDE_DIRS} + ${Boost_INCLUDE_DIRS} +@@ -97,7 +96,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + m + ${TBB_LIBRARIES} + ${LIBSAILFISH_LINKER_FLAGS} +@@ -115,7 +113,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + m + ${TBB_LIBRARIES} + ${LIBSAILFISH_LINKER_FLAGS} -- GitLab From 364705bb737cb8efecb12254ddb8328f74da3b3d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 7 Jul 2017 15:40:19 +0200 Subject: [PATCH 063/845] add Rtsne as extension to R 3.4.0 --- .../r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 1 + .../r/R/Rtsne-0.13_icpc-wd308.patch | 20 +++++++++++++++++++ 2 files changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 5616a94b6a..78bdaaa928 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -527,6 +527,7 @@ exts_list = [ ('glmmML', '1.0.2', ext_options), ('ucminf', '1.1-4', ext_options), ('ordinal', '2015.6-28', ext_options), + ('Rtsne', '0.13', dict(ext_options.items() + [('patches', ['Rtsne-0.13_icpc-wd308.patch'])])), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch b/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch new file mode 100644 index 0000000000..f1c22fbba2 --- /dev/null +++ b/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch @@ -0,0 +1,20 @@ +--- Rtsne.orig/src/Makevars 2017-04-14 17:51:58.000000000 +0200 ++++ Rtsne/src/Makevars 2017-07-07 15:29:41.426358000 +0200 +@@ -25,4 +25,5 @@ + ## done by a number of packages, but recommended only for more advanced users + ## comfortable with autoconf and its related tools. + +- ++# disable Intel C++ compiler (icpc) warning/error #308, to avoid 'member "std::complex::_M_value" is inaccessible' ++PKG_CXXFLAGS = -wd308 +--- Rtsne.orig/MD5 2017-04-14 18:38:37.000000000 +0200 ++++ Rtsne/MD5 2017-07-07 15:29:58.247065000 +0200 +@@ -6,7 +6,7 @@ + 7af8fde3597798501e00bdc337d8f03e *README.md + 42ae2f3c4872e03c5e401d949a86cad9 *inst/CITATION + 065bed604fc3d4be094fea9fbf7f162e *man/Rtsne.Rd +-fcd429500be5e9251157f001145e8a8b *src/Makevars ++5ed55ce6fb49190f62c48ff8ce8705a1 *src/Makevars + e9a378d06e68a325926bf92e779f280e *src/Makevars.win + 5d991038a3c68e7232302c837179c26d *src/RcppExports.cpp + 3740407bdc49d16ee9a7a8d5ee96a327 *src/Rtsne.cpp -- GitLab From aa4b988517a8c6f143af91b990c1cc3a0c85a567 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 7 Jul 2017 15:42:58 +0200 Subject: [PATCH 064/845] adding easyconfigs: Seurat-1.4.0-intel-2017a-R-3.4.0.eb --- .../Seurat-1.4.0-intel-2017a-R-3.4.0.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb diff --git a/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000..7db49d1db5 --- /dev/null +++ b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb @@ -0,0 +1,22 @@ +easyblock = 'RPackage' + +name = 'Seurat' +version = '1.4.0' +versionsuffix = '-R-%(rver)s' + +homepage = 'http://satijalab.org/seurat' +description = "Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/satijalab/seurat/releases/download/v%(version_major_minor)s.0/'] +sources = ['%(name)s_%(version)s.tgz'] + +dependencies = [('R', '3.4.0', '-X11-20170314')] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'bio' -- GitLab From 86575128430ae51b7d7d79940826d9937455e220 Mon Sep 17 00:00:00 2001 From: jrbosch Date: Fri, 7 Jul 2017 10:40:02 -0400 Subject: [PATCH 065/845] use the new URL in the header - https://github.com/easybuilders/easybuild --- .../b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb index 82e737e6cf..dc0119ae93 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , -- GitLab From 028cae5ca68d431ccf9482757d3a208613f3b74e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 7 Jul 2017 16:50:50 +0200 Subject: [PATCH 066/845] add comments to patch for Rtsne --- easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch b/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch index f1c22fbba2..6c76f3883e 100644 --- a/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch +++ b/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch @@ -1,4 +1,6 @@ ---- Rtsne.orig/src/Makevars 2017-04-14 17:51:58.000000000 +0200 +add -wd308 compiler option to avoid compiler warning #308 being treated as an error +author: Kenneth Hoste (HPC-UGent) +-- Rtsne.orig/src/Makevars 2017-04-14 17:51:58.000000000 +0200 +++ Rtsne/src/Makevars 2017-07-07 15:29:41.426358000 +0200 @@ -25,4 +25,5 @@ ## done by a number of packages, but recommended only for more advanced users -- GitLab From 5062b06e6694b73d1609e4f8af885a9bf2217718 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 7 Jul 2017 14:51:17 -0500 Subject: [PATCH 067/845] adding easyconfigs: GCC-6.4.0-2.28.eb --- .../b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb | 13 ++++---- easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb | 19 ++++++++---- .../b/binutils/binutils-2.28-GCCcore-6.4.0.eb | 8 +++-- .../easyconfigs/b/binutils/binutils-2.28.eb | 8 +++-- .../f/flex/flex-2.6.4-GCCcore-6.4.0.eb | 16 ++++++---- easybuild/easyconfigs/f/flex/flex-2.6.4.eb | 30 +++++++++++++++++++ easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb | 14 ++++++--- .../easyconfigs/g/GCCcore/GCCcore-6.4.0.eb | 18 ++++++----- .../help2man/help2man-1.47.4-GCCcore-6.4.0.eb | 8 +++-- .../easyconfigs/h/help2man/help2man-1.47.4.eb | 9 ++++-- .../m/M4/M4-1.4.18-GCCcore-6.4.0.eb | 20 ++++++++----- easybuild/easyconfigs/m/M4/M4-1.4.18.eb | 17 ++++++----- .../z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb | 20 ++++++++----- easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb | 18 +++++++---- 14 files changed, 156 insertions(+), 62 deletions(-) create mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.4.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb index 2623578bc5..8a3bfe8164 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb @@ -4,13 +4,17 @@ name = 'Bison' version = '3.0.4' homepage = 'http://www.gnu.org/software/bison' -description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar - into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +description = """ + Bison is a general-purpose parser generator that converts an annotated + context-free grammar into a deterministic LR or generalized LR (GLR) parser + employing LALR(1) parser tables. +""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] builddependencies = [ @@ -19,10 +23,9 @@ builddependencies = [ ('binutils', '2.28', '', True), ] - sanity_check_paths = { + 'dirs': ['bin', 'lib'], 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], - 'dirs': [], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb index 7828372bd5..ea20c01d4d 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb @@ -4,19 +4,26 @@ name = 'Bison' version = '3.0.4' homepage = 'http://www.gnu.org/software/bison' -description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar -into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +description = """ + Bison is a general-purpose parser generator that converts an annotated + context-free grammar into a deterministic LR or generalized LR (GLR) parser + employing LALR(1) parser tables. +""" toolchain = {'name': 'dummy', 'version': ''} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] -builddependencies = [('M4', '1.4.17')] +builddependencies = [ + ('M4', '1.4.18'), +] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], - 'dirs': [], + 'dirs': ['bin', 'lib'], + 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb index b6486c7dfb..cb761e0729 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb @@ -1,13 +1,16 @@ +easyblock = 'EB_binutils' + name = 'binutils' version = '2.28' homepage = 'http://directory.fsf.org/project/binutils/' + description = "binutils: GNU binary utilities" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] checksums = ['cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'] builddependencies = [ @@ -15,7 +18,8 @@ builddependencies = [ ('Bison', '3.0.4'), # zlib required, but being linked in statically, so not a runtime dep ('zlib', '1.2.11'), - # use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils + # use same binutils version that was used when building GCC toolchain, + # to 'bootstrap' this binutils ('binutils', version, '', True) ] diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb index 7681d5cc1f..a3ca8d487e 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb @@ -1,16 +1,20 @@ +easyblock = 'EB_binutils' + name = 'binutils' version = '2.28' homepage = 'http://directory.fsf.org/project/binutils/' + description = "binutils: GNU binary utilities" toolchain = {'name': 'dummy', 'version': ''} -sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'] builddependencies = [ - ('flex', '2.6.3'), + ('flex', '2.6.4'), ('Bison', '3.0.4'), # zlib required, but being linked in statically, so not a runtime dep ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb index 55845823d8..37b5152374 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb @@ -2,18 +2,20 @@ name = 'flex' version = '2.6.4' homepage = 'http://flex.sourceforge.net/' -description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, - sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} -sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] - +sources = [SOURCELOWER_TAR_GZ] checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] -dependencies = [('M4', '1.4.18')] builddependencies = [ ('Bison', '3.0.4'), ('help2man', '1.47.4'), @@ -21,4 +23,8 @@ builddependencies = [ ('binutils', '2.28', '', True), ] +dependencies = [ + ('M4', '1.4.18'), +] + moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4.eb new file mode 100644 index 0000000000..d85380798d --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4.eb @@ -0,0 +1,30 @@ +easyblock = 'EB_flex' + +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb index 6d830c0286..f5f6e4e49d 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb @@ -7,19 +7,25 @@ binutilsver = '2.28' versionsuffix = '-%s' % binutilsver homepage = 'http://gcc.gnu.org/' -description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, - as well as libraries for these languages (libstdc++, libgcj,...).""" + +description = """ + The GNU Compiler Collection includes front ends for C, C++, Objective-C, + Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, + libgcj,...). [NOTE: This module does not include Objective-C, Java or Ada] +""" toolchain = {'name': 'dummy', 'version': ''} dependencies = [ ('GCCcore', version), - # binutils built on top of GCCcore, which was built on top of (dummy-built) binutils + # binutils built on top of GCCcore, which was built + # on top of (dummy-built) binutils ('binutils', binutilsver, '', ('GCCcore', version)), ] altroot = 'GCCcore' altversion = 'GCCcore' -# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +# this bundle serves as a compiler-only toolchain, +# so it should be marked as compiler (important for HMNS) moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb index 8c17a18894..37077d5dbf 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb @@ -4,8 +4,12 @@ name = 'GCCcore' version = '6.4.0' homepage = 'http://gcc.gnu.org/' -description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, - as well as libraries for these languages (libstdc++, libgcj,...).""" + +description = """ + The GNU Compiler Collection includes front ends for C, C++, Objective-C, + Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, + libgcj,...). [NOTE: This module does not include Objective-C, Java or Ada] +""" toolchain = {'name': 'dummy', 'version': ''} @@ -40,11 +44,11 @@ patches = [ ] checksums = [ - '4715f02413f8a91d02d967521c084990c99ce1a671b8a450a80fbd4245f4b728', # gcc-6.4.0.tar.gz - '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 - 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.gz - '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz - '412538bb65c799ac98e17e8cfcdacbb257a57362acfaaff254b0fcae970126d2', # isl-0.16.1.tar.bz2 + '4715f02413f8a91d02d967521c084990c99ce1a671b8a450a80fbd4245f4b728', # gcc-6.4.0.tar.gz + '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 + 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.gz + '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz + '412538bb65c799ac98e17e8cfcdacbb257a57362acfaaff254b0fcae970126d2', # isl-0.16.1.tar.bz2 '137108952139486755e8c1bee30314ffa9233cc05cddfd848aa85503a6fea9d7', # mpfr-3.1.5-allpatches-20170606.patch '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68', # GCCcore-6.2.0-fix-find-isl.patch ] diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb index 192cdb14fe..2993c21bd9 100644 --- a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb @@ -4,7 +4,11 @@ name = 'help2man' version = '1.47.4' homepage = 'https://www.gnu.org/software/help2man/' -description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +description = """ + help2man produces simple manual pages from the '--help' and '--version' + output of other commands. +""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} @@ -18,8 +22,8 @@ builddependencies = [ ] sanity_check_paths = { + 'dirs': ['bin'], 'files': ['bin/help2man'], - 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb index 292de661e9..a06e019c8b 100644 --- a/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb @@ -4,16 +4,21 @@ name = 'help2man' version = '1.47.4' homepage = 'https://www.gnu.org/software/help2man/' -description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +description = """ + help2man produces simple manual pages from the '--help' and '--version' + output of other commands. +""" toolchain = {'name': 'dummy', 'version': ''} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] sanity_check_paths = { + 'dirs': ['bin'], 'files': ['bin/help2man'], - 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb index 2aef3d06c6..0aaa327fd6 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb @@ -4,26 +4,32 @@ name = 'M4' version = '1.4.18' homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible - although it has some extensions (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +description = """ + GNU M4 is an implementation of the traditional Unix macro processor. It is + mostly SVR4 compatible although it has some extensions (for example, handling + more than 9 positional parameters to macros). GNU M4 also has built-in + functions for including files, running shell commands, doing arithmetic, etc. +""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # use same binutils version that was used when building GCC toolchain -builddependencies = [('binutils', '2.28', '', True)] +builddependencies = [ + ('binutils', '2.28', '', True), +] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'files': ["bin/m4"], - 'dirs': [], + 'dirs': ['bin'], + 'files': ['bin/m4'], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb index bce719edb0..5d4ba8a946 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb @@ -4,24 +4,27 @@ name = 'M4' version = '1.4.18' homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. - It is mostly SVR4 compatible although it has some extensions - (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. + +description = """ + GNU M4 is an implementation of the traditional Unix macro processor. It is + mostly SVR4 compatible although it has some extensions (for example, handling + more than 9 positional parameters to macros). GNU M4 also has built-in + functions for including files, running shell commands, doing arithmetic, etc. """ toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'files': ["bin/m4"], - 'dirs': [], + 'dirs': ['bin'], + 'files': ['bin/m4'], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb index a520a02364..dfe62b551a 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb @@ -4,23 +4,29 @@ name = 'zlib' version = '1.2.11' homepage = 'http://www.zlib.net/' -description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, - not covered by any patents -- lossless data-compression library for use on virtually any - computer hardware and operating system.""" + +description = """ + zlib is designed to be a free, general-purpose, legally unencumbered -- that + is, not covered by any patents -- lossless data-compression library for use + on virtually any computer hardware and operating system. +""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} -source_urls = ['http://zlib.net/fossils'] +source_urls = ['http://zlib.net/fossils/'] sources = [SOURCELOWER_TAR_GZ] checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] # use same binutils version that was used when building GCC toolchain -builddependencies = [('binutils', '2.28', '', True)] +builddependencies = [ + ('binutils', '2.28', '', True), +] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], - 'dirs': [], + 'dirs': ['include', 'lib'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', + 'lib/libz.%s' % SHLIB_EXT], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb index b74939ef09..b582c747ed 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb @@ -4,23 +4,29 @@ name = 'zlib' version = '1.2.11' homepage = 'http://www.zlib.net/' -description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, - not covered by any patents -- lossless data-compression library for use on virtually any - computer hardware and operating system.""" + +description = """ + zlib is designed to be a free, general-purpose, legally unencumbered -- that + is, not covered by any patents -- lossless data-compression library for use + on virtually any computer hardware and operating system. +""" toolchain = {'name': 'dummy', 'version': 'dummy'} toolchainopts = {'pic': True} source_urls = ['http://zlib.net/fossils/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] # need to take care of $CFLAGS ourselves with dummy toolchain -# we need to add -fPIC, but should also include -O* option to avoid compiling with -O0 (default for GCC) +# we need to add -fPIC, but should also include -O* option to avoid +# compiling with -O0 (default for GCC) buildopts = 'CFLAGS="-O2 -fPIC"' sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], - 'dirs': [], + 'dirs': ['include', 'lib'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', + 'lib/libz.%s' % SHLIB_EXT], } moduleclass = 'lib' -- GitLab From e450ad265a7d5c46daf2780b7c049695a1b99b3e Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 8 Jul 2017 10:49:07 -0500 Subject: [PATCH 068/845] bowing to authority and will ask the whys later --- .../b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb | 2 +- easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb | 4 ++-- .../easyconfigs/b/binutils/binutils-2.28.eb | 2 +- easybuild/easyconfigs/f/flex/flex-2.6.3.eb | 17 +++++++++++++---- .../h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb | 2 +- .../easyconfigs/h/help2man/help2man-1.47.4.eb | 2 +- easybuild/easyconfigs/m/M4/M4-1.4.17.eb | 15 +++++++++------ .../easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb | 2 +- easybuild/easyconfigs/m/M4/M4-1.4.18.eb | 2 +- .../z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb | 2 +- 11 files changed, 32 insertions(+), 20 deletions(-) diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb index 8a3bfe8164..00833a66e3 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb @@ -24,8 +24,8 @@ builddependencies = [ ] sanity_check_paths = { - 'dirs': ['bin', 'lib'], 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], + 'dirs': [], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb index ea20c01d4d..fc43bdc45f 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb @@ -18,12 +18,12 @@ sources = [SOURCELOWER_TAR_GZ] checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] builddependencies = [ - ('M4', '1.4.18'), + ('M4', '1.4.17'), ] sanity_check_paths = { - 'dirs': ['bin', 'lib'], 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], + 'dirs': [], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb index a3ca8d487e..873588d2d7 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] checksums = ['cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'] builddependencies = [ - ('flex', '2.6.4'), + ('flex', '2.6.3'), ('Bison', '3.0.4'), # zlib required, but being linked in statically, so not a runtime dep ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.3.eb b/easybuild/easyconfigs/f/flex/flex-2.6.3.eb index 568be27f41..9161055702 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.6.3.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.6.3.eb @@ -1,22 +1,31 @@ +easyblock = 'EB_flex' + name = 'flex' version = '2.6.3' homepage = 'http://flex.sourceforge.net/' -description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, - sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" toolchain = {'name': 'dummy', 'version': ''} toolchainopts = {'pic': True} -sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] checksums = ['a5f65570cd9107ec8a8ec88f17b31bb1'] -dependencies = [('M4', '1.4.18')] builddependencies = [ ('Bison', '3.0.4'), ('help2man', '1.47.4'), ] +dependencies = [ + ('M4', '1.4.18'), +] + moduleclass = 'lang' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb index 2993c21bd9..c354ad3369 100644 --- a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb @@ -22,8 +22,8 @@ builddependencies = [ ] sanity_check_paths = { - 'dirs': ['bin'], 'files': ['bin/help2man'], + 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb index a06e019c8b..9dded57c01 100644 --- a/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb @@ -17,8 +17,8 @@ sources = [SOURCE_TAR_XZ] checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] sanity_check_paths = { - 'dirs': ['bin'], 'files': ['bin/help2man'], + 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17.eb index 92afdc0086..0ac466ffad 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17.eb @@ -4,23 +4,26 @@ name = 'M4' version = '1.4.17' homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. - It is mostly SVR4 compatible although it has some extensions - (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. + +description = """ + GNU M4 is an implementation of the traditional Unix macro processor. It is + mostly SVR4 compatible although it has some extensions (for example, handling + more than 9 positional parameters to macros). GNU M4 also has built-in + functions for including files, running shell commands, doing arithmetic, etc. """ toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'files': ["bin/m4"], + 'files': ['bin/m4'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb index 0aaa327fd6..a71de342f1 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb @@ -28,8 +28,8 @@ builddependencies = [ configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'dirs': ['bin'], 'files': ['bin/m4'], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb index 5d4ba8a946..ac19a0bf0a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb @@ -23,8 +23,8 @@ checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'dirs': ['bin'], 'files': ['bin/m4'], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb index dfe62b551a..acbff073f4 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb @@ -24,9 +24,9 @@ builddependencies = [ ] sanity_check_paths = { - 'dirs': ['include', 'lib'], 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb index b582c747ed..d8f38e9cad 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb @@ -24,9 +24,9 @@ checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] buildopts = 'CFLAGS="-O2 -fPIC"' sanity_check_paths = { - 'dirs': ['include', 'lib'], 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'lib' -- GitLab From ce776755097cde226b848c01874e180eda20183b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 8 Jul 2017 19:23:56 +0200 Subject: [PATCH 069/845] fix reference to github.com/hpcugent in GROMACS easyconfig --- .../easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb index 24d9e0afe2..070615703c 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute -- GitLab From 953a508d0f013c50dc8b9eebcadcfa0e65fcab95 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 8 Jul 2017 19:44:44 +0200 Subject: [PATCH 070/845] notify EasyBuild maintainers of failing tests --- .travis.yml | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.travis.yml b/.travis.yml index cab5b8a8be..d0416aad91 100644 --- a/.travis.yml +++ b/.travis.yml @@ -49,3 +49,11 @@ script: - cd $HOME - export PYTHONPATH=$TRAVIS_BUILD_DIR - python -O -m test.easyconfigs.suite +# EasyBuild maintainers should get notified when tests in master/develop fail; +# no notifications are sent for pull requests +notifications: + email: + recipients: + - easybuild-maintainers@lists.ugent.be + on_success: change + on_failure: always -- GitLab From 6348765f06cc4e0199fe66cb609ecdda63ccb226 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 9 Jul 2017 05:17:30 -0500 Subject: [PATCH 071/845] EBv2.0 didn't go far enough on explict easyblocks :) --- easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb | 2 -- easybuild/easyconfigs/b/binutils/binutils-2.28.eb | 2 -- easybuild/easyconfigs/f/flex/flex-2.6.4.eb | 2 -- 3 files changed, 6 deletions(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb index cb761e0729..4281a9f323 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb @@ -1,5 +1,3 @@ -easyblock = 'EB_binutils' - name = 'binutils' version = '2.28' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb index 873588d2d7..a50c4f25ca 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb @@ -1,5 +1,3 @@ -easyblock = 'EB_binutils' - name = 'binutils' version = '2.28' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4.eb index d85380798d..7ef4743c46 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.6.4.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4.eb @@ -1,5 +1,3 @@ -easyblock = 'EB_flex' - name = 'flex' version = '2.6.4' -- GitLab From 4b9b3864ad8a5ca4555d59e423019165aad94c98 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 9 Jul 2017 05:36:26 -0500 Subject: [PATCH 072/845] missed one --- easybuild/easyconfigs/f/flex/flex-2.6.3.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.3.eb b/easybuild/easyconfigs/f/flex/flex-2.6.3.eb index 9161055702..f920a0f965 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.6.3.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.6.3.eb @@ -1,5 +1,3 @@ -easyblock = 'EB_flex' - name = 'flex' version = '2.6.3' -- GitLab From f9ee63dd1023732f31de530aef9cea79496677cb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 9 Jul 2017 19:01:46 +0200 Subject: [PATCH 073/845] Revert "notify EasyBuild maintainers of failing tests" This reverts commit 953a508d0f013c50dc8b9eebcadcfa0e65fcab95. --- .travis.yml | 8 -------- 1 file changed, 8 deletions(-) diff --git a/.travis.yml b/.travis.yml index d0416aad91..cab5b8a8be 100644 --- a/.travis.yml +++ b/.travis.yml @@ -49,11 +49,3 @@ script: - cd $HOME - export PYTHONPATH=$TRAVIS_BUILD_DIR - python -O -m test.easyconfigs.suite -# EasyBuild maintainers should get notified when tests in master/develop fail; -# no notifications are sent for pull requests -notifications: - email: - recipients: - - easybuild-maintainers@lists.ugent.be - on_success: change - on_failure: always -- GitLab From 7a71cee4fa329d1504b027bd441d30828e551959 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 9 Jul 2017 16:28:03 -0500 Subject: [PATCH 074/845] adding easyconfigs: libsigsegv-2.11-GCC-6.4.0-2.28.eb, libsigsegv-2.11-GCCcore-6.4.0.eb --- .../libsigsegv-2.11-GCC-6.4.0-2.28.eb | 24 ++++++++++++++++ .../libsigsegv-2.11-GCCcore-6.4.0.eb | 28 +++++++++++++++++++ 2 files changed, 52 insertions(+) create mode 100644 easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..dfc2614481 --- /dev/null +++ b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb @@ -0,0 +1,24 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'libsigsegv' +version = '2.11' + +homepage = 'https://www.gnu.org/software/libsigsegv/' + +description = """ + GNU libsigsegv is a library for handling page faults in user mode. +""" + +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'dirs': ['include', 'lib'], + 'files': ['include/sigsegv.h', 'lib/libsigsegv.a', 'lib/libsigsegv.la'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..cdeb207cc1 --- /dev/null +++ b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'libsigsegv' +version = '2.11' + +homepage = 'https://www.gnu.org/software/libsigsegv/' + +description = """ + GNU libsigsegv is a library for handling page faults in user mode. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'dirs': ['include', 'lib'], + 'files': ['include/sigsegv.h', 'lib/libsigsegv.a', 'lib/libsigsegv.la'], +} + +moduleclass = 'lib' -- GitLab From bfc7a51f6291e138bf7f0e9c711b1201e1c5a74e Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 10 Jul 2017 00:03:05 +0200 Subject: [PATCH 075/845] added easyconfig for miniconda --- .../easyconfigs/m/Miniconda/Miniconda-4.3.21.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb diff --git a/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb b/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb new file mode 100644 index 0000000000..a5ae211a5c --- /dev/null +++ b/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb @@ -0,0 +1,17 @@ +easyblock = 'EB_Anaconda' + +name = 'Miniconda2' +version = '4.3.21' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/miniconda/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] + +moduleclass = 'lang' -- GitLab From 17ea4f57e70ff40e221a71fd094d6ce2bd0c4dab Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 9 Jul 2017 17:04:23 -0500 Subject: [PATCH 076/845] alter sanity_check_paths to match the sanity standards of EB (which may or may not be entirely sane) --- .../easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb | 2 +- .../easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb index dfc2614481..716653df4c 100644 --- a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb @@ -17,8 +17,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'dirs': ['include', 'lib'], 'files': ['include/sigsegv.h', 'lib/libsigsegv.a', 'lib/libsigsegv.la'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb index cdeb207cc1..519b35b032 100644 --- a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'dirs': ['include', 'lib'], 'files': ['include/sigsegv.h', 'lib/libsigsegv.a', 'lib/libsigsegv.la'], + 'dirs': [], } moduleclass = 'lib' -- GitLab From 4208b46a31a003336870a20378e1d9d683c58508 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 10 Jul 2017 00:09:26 +0200 Subject: [PATCH 077/845] added miniconda easyconfig --- .../easyconfigs/m/Miniconda/Miniconda-4.3.21.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb diff --git a/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb b/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb new file mode 100644 index 0000000000..a5ae211a5c --- /dev/null +++ b/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb @@ -0,0 +1,17 @@ +easyblock = 'EB_Anaconda' + +name = 'Miniconda2' +version = '4.3.21' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/miniconda/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] + +moduleclass = 'lang' -- GitLab From a845d52a42c29d6f32c8f3d18b57f2ced7fae8e4 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Mon, 10 Jul 2017 14:35:38 +0800 Subject: [PATCH 078/845] prepare release notes for eb331 --- RELEASE_NOTES | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 904813d080..ef2fd1b52d 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,6 +6,29 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 7,247 easyconfig files, for 1,256 different software packages, 25 different (compiler) toolchains, 13 software bundles and 1 meta-package. +v3.3.1 (July 12th 2017) +----------------------- + +bugfix/update release +- added example easyconfig files for 5 new software packages: + - FastME (#4811), geopy (#4821), ngmlr (#4818), OpenCoarrays (#4799), Seurat (#4832) +- added additional easyconfigs for various supported software packages, including: + - ABAQUS 2017, ASE 3.13.0, BWA 0.7.15, Biopython 1.68, Bison 3.0.4, Bison 3.0.4, Boost 1.54.0, Boost 1.58.0, Bowtie 1.1.2, binutils 2.28, Circos 0.69, DB 6.2.32, Doxygen 1.8.13, FFmpeg 3.2.4, FLUENT 18.1.eb, flex 2.6.3, flex 2.6.4, fontconfig 2.12.1, freetype 2.7.1, GCC 6.4.0, GCCcore 6.4.0.eb, GROMACS 2016.3, g2log 1.0, git 2.13.1, HDF5 1.8.18, help2man 1.47.4, help2man 1.47.4, Jellyfish 2.2.6, Keras 2.0.5, kallisto 0.43.1, LibTIFF 4.0.8, libxslt 1.1.29, likwid 4.2.0, likwid 4.2.0, M4 1.4.18, matplotlib 2.0.2, molmod 1.1, NCBI Toolkit, numpy 1.13.0, PCRE 8.40, Pillow 4.1.1, pigz 2.3.3, pkg config, Sailfish 0.10.1, Salmon 0.8.2, Szip 2.1, scikit learn, skewer 0.2.2, Tensorflow 1.2.0, tbb 2017_U5, vsc install, vsc mympirun, X11 20170129, x264 20170406, Yasm 1.3.0, yaff 1.1.2, yaff 1.1.3, zlib 1.2.11 +- minor enhancements, including: + - add SVG and Statistics::Basic to recent Perl versions (#4796) + - remove buildopts from HDF5 easyconfigs, taken care of by updated HDF5 easyblock now (#4779) + - include joblib as extension in recent Python easyconfigs (#4805) + - changed moduleclass in mpi4py to better reflect what it is and to not confuse HMNS (#4807) + - get rid of references to 'hpcugent' organisation after move to github.com/easybuilders (#4815) + - add Rtsne as extension to R 3.4.0 (#4831) + - fix reference to github.com/hpcugent in GROMACS easyconfig (#4837) +- various bug fixes, including: + - use PYPI_SOURCE as source URL in Tensorflow easyconfigs (#4786) + - fix homepage for skewer (#4791) + - sync/fix source_urls & homepage in HDF5 easyconfig (#4800) + - fix ubsan error blocking build of GCCcore 6.1.0, 6.2.0, 6.3.0 with system GCC 7.1 (#4813) + + v3.3.0 (June 26th 2017) ----------------------- -- GitLab From 2d3d85367eb920e815580d9bc3471faa843ddd75 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Mon, 10 Jul 2017 18:26:39 +0100 Subject: [PATCH 079/845] adding easyconfigs: VERSE-0.1.5-foss-2016b.eb --- .../v/VERSE/VERSE-0.1.5-foss-2016b.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100755 easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb diff --git a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb new file mode 100755 index 0000000000..3b817ea0e5 --- /dev/null +++ b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY, as per https://github.com/easybuilders/easybuild +# Adam Huffman +# The Francis Crick Institute +easyblock = 'MakeCp' + +name = 'VERSE' +version = '0.1.5' + +homepage = 'https://github.com/qinzhu/VERSE' +description = """A versatile and efficient RNA-Seq read counting tool""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +# No proper release tarballs +sources = ['master.zip'] +source_urls = ['https://github.com/qinzhu/VERSE/archive'] + +buildopts = ' -f Makefile.Linux' + +start_dir = 'src' + +files_to_copy = [(['%(namelower)s'], 'bin'), 'LICENSE', 'readme.txt', 'update_log.txt', '%(namelower)s_manual.html', 'testdata' ] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s', 'readme.txt'], + 'dirs': ['testdata'] +} + +moduleclass = 'bio' -- GitLab From 87b0b30ed563af0f87fff02e0f4dff831967325a Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Mon, 10 Jul 2017 19:07:29 +0100 Subject: [PATCH 080/845] Fix PEP8 errors --- easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb index 3b817ea0e5..fdecec7eee 100755 --- a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb +++ b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb @@ -19,7 +19,8 @@ buildopts = ' -f Makefile.Linux' start_dir = 'src' -files_to_copy = [(['%(namelower)s'], 'bin'), 'LICENSE', 'readme.txt', 'update_log.txt', '%(namelower)s_manual.html', 'testdata' ] +files_to_copy = [(['%(namelower)s'], 'bin'), 'LICENSE', 'readme.txt', 'update_log.txt', + '%(namelower)s_manual.html', 'testdata'] sanity_check_paths = { 'files': ['bin/%(namelower)s', 'readme.txt'], -- GitLab From 3cc0f5cc9a301affc02ec7bef261fd459f4fd502 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 10 Jul 2017 20:31:56 +0200 Subject: [PATCH 081/845] renamed miniconda2 easyconfig --- .../Miniconda-4.3.21.eb => Miniconda2/Miniconda2-4.3.21.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/m/{Miniconda/Miniconda-4.3.21.eb => Miniconda2/Miniconda2-4.3.21.eb} (100%) diff --git a/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb b/easybuild/easyconfigs/m/Miniconda2/Miniconda2-4.3.21.eb similarity index 100% rename from easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb rename to easybuild/easyconfigs/m/Miniconda2/Miniconda2-4.3.21.eb -- GitLab From 29836ba5d091e5ede388c15ba0c1b1a7de11b1a7 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 10 Jul 2017 20:34:31 +0200 Subject: [PATCH 082/845] removed miniconda easyconfig with wrong name --- .../easyconfigs/m/Miniconda/Miniconda-4.3.21.eb | 17 ----------------- 1 file changed, 17 deletions(-) delete mode 100644 easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb diff --git a/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb b/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb deleted file mode 100644 index a5ae211a5c..0000000000 --- a/easybuild/easyconfigs/m/Miniconda/Miniconda-4.3.21.eb +++ /dev/null @@ -1,17 +0,0 @@ -easyblock = 'EB_Anaconda' - -name = 'Miniconda2' -version = '4.3.21' - -homepage = 'https://www.continuum.io/anaconda-overview' -description = """Built to complement the rich, open source Python community, -the Anaconda platform provides an enterprise-ready data analytics platform -that empowers companies to adopt a modern open data science analytics architecture. -""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -source_urls = ['https://repo.continuum.io/miniconda/'] -sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] - -moduleclass = 'lang' -- GitLab From 9bfcb388b655a8973de34a2f66eb01a16fca55a9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 10 Jul 2017 21:26:21 +0200 Subject: [PATCH 083/845] minor cleanup in EasyBuild v3.3.1 release notes + include #4841 --- RELEASE_NOTES | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index ef2fd1b52d..e766c8da3c 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,25 +3,24 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,247 easyconfig files, for 1,256 different software packages, +The latest version of easybuild-easyconfig provides 7,313 easyconfig files, for 1,262 different software packages, 25 different (compiler) toolchains, 13 software bundles and 1 meta-package. v3.3.1 (July 12th 2017) ----------------------- bugfix/update release -- added example easyconfig files for 5 new software packages: - - FastME (#4811), geopy (#4821), ngmlr (#4818), OpenCoarrays (#4799), Seurat (#4832) +- added example easyconfig files for 6 new software packages: + - FastME (#4811), geopy (#4821), Miniconda2 (#4841), ngmlr (#4818), OpenCoarrays (#4799), Seurat (#4832) - added additional easyconfigs for various supported software packages, including: - - ABAQUS 2017, ASE 3.13.0, BWA 0.7.15, Biopython 1.68, Bison 3.0.4, Bison 3.0.4, Boost 1.54.0, Boost 1.58.0, Bowtie 1.1.2, binutils 2.28, Circos 0.69, DB 6.2.32, Doxygen 1.8.13, FFmpeg 3.2.4, FLUENT 18.1.eb, flex 2.6.3, flex 2.6.4, fontconfig 2.12.1, freetype 2.7.1, GCC 6.4.0, GCCcore 6.4.0.eb, GROMACS 2016.3, g2log 1.0, git 2.13.1, HDF5 1.8.18, help2man 1.47.4, help2man 1.47.4, Jellyfish 2.2.6, Keras 2.0.5, kallisto 0.43.1, LibTIFF 4.0.8, libxslt 1.1.29, likwid 4.2.0, likwid 4.2.0, M4 1.4.18, matplotlib 2.0.2, molmod 1.1, NCBI Toolkit, numpy 1.13.0, PCRE 8.40, Pillow 4.1.1, pigz 2.3.3, pkg config, Sailfish 0.10.1, Salmon 0.8.2, Szip 2.1, scikit learn, skewer 0.2.2, Tensorflow 1.2.0, tbb 2017_U5, vsc install, vsc mympirun, X11 20170129, x264 20170406, Yasm 1.3.0, yaff 1.1.2, yaff 1.1.3, zlib 1.2.11 + - ABAQUS 2017, GCC(core) 6.4.0, Keras 2.0.5, NCBI-Toolkit 18.0.0, numpy 1.13.0, Tensorflow 1.2.0 - minor enhancements, including: - add SVG and Statistics::Basic to recent Perl versions (#4796) - remove buildopts from HDF5 easyconfigs, taken care of by updated HDF5 easyblock now (#4779) - include joblib as extension in recent Python easyconfigs (#4805) - changed moduleclass in mpi4py to better reflect what it is and to not confuse HMNS (#4807) - - get rid of references to 'hpcugent' organisation after move to github.com/easybuilders (#4815) + - get rid of references to 'hpcugent' organisation after move to github.com/easybuilders (#4815, #4837) - add Rtsne as extension to R 3.4.0 (#4831) - - fix reference to github.com/hpcugent in GROMACS easyconfig (#4837) - various bug fixes, including: - use PYPI_SOURCE as source URL in Tensorflow easyconfigs (#4786) - fix homepage for skewer (#4791) -- GitLab From 78ed6a695d355f7dd58fe091bfcf9cdc5b6141d3 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 07:14:15 +0100 Subject: [PATCH 084/845] Use new source file renaming --- easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb index fdecec7eee..87ff075002 100755 --- a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb +++ b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb @@ -11,8 +11,11 @@ description = """A versatile and efficient RNA-Seq read counting tool""" toolchain = {'name': 'foss', 'version': '2016b'} -# No proper release tarballs -sources = ['master.zip'] +sources = [{ + 'filename': '%(name)s-%(version)s.zip', + 'download_filename': 'master.zip', # No proper release tarballs +}] + source_urls = ['https://github.com/qinzhu/VERSE/archive'] buildopts = ' -f Makefile.Linux' -- GitLab From 366b862195676cc04ba10a87acd0ff1da78de2f3 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 07:47:22 +0100 Subject: [PATCH 085/845] adding easyconfigs: picard-2.6.0-Java-1.8.0_131.eb, picard-2.10.0-Java-1.8.0_131.eb --- .../p/picard/picard-2.10.0-Java-1.8.0_131.eb | 38 +++++++++++++++++++ .../p/picard/picard-2.6.0-Java-1.8.0_131.eb | 37 ++++++++++++++++++ 2 files changed, 75 insertions(+) create mode 100755 easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb create mode 100755 easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb diff --git a/easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb new file mode 100755 index 0000000000..170d1a3b37 --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb @@ -0,0 +1,38 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +# 2.10.0: +# Adam Huffman +# The Francis Crick Institute +# +## + +easyblock = 'JAR' + +name = 'picard' +version = '2.10.0' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] +sources = ['%(name)s.jar'] + +dependencies = [('Java', '1.8.0_131')] + +sanity_check_paths = { + 'files': ['picard.jar'], + 'dirs': [], +} + +modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb new file mode 100755 index 0000000000..281b0c7c59 --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb @@ -0,0 +1,37 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +# 2.6.0: +# Adam Huffman +# The Francis Crick Institute +## + +easyblock = 'JAR' + +name = 'picard' +version = '2.6.0' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] +sources = ['%(name)s.jar'] + +dependencies = [('Java', '1.8.0_131')] + +sanity_check_paths = { + 'files': ['picard.jar'], + 'dirs': [], +} + +modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" + +moduleclass = 'bio' -- GitLab From 83cd7fdd0a059db8e4cdea873ca5d9c80e8d20d9 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 07:49:45 +0100 Subject: [PATCH 086/845] Another PEP8-compliance fix --- easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb index 87ff075002..6ef907ef1e 100755 --- a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb +++ b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} sources = [{ 'filename': '%(name)s-%(version)s.zip', - 'download_filename': 'master.zip', # No proper release tarballs + 'download_filename': 'master.zip', # No proper release tarballs }] source_urls = ['https://github.com/qinzhu/VERSE/archive'] -- GitLab From e60d49ca3987eed4bb64b123f80b2ab5742dd59d Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 07:43:50 -0500 Subject: [PATCH 087/845] adding easyconfigs: libpng-1.6.30-GCCcore-6.4.0.eb --- .../l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..6dc219faec --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.30' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' + +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +majminver = ''.join(version.split('.')[:2]) + +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', + 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/libpng%s.a' % majminver, + 'lib/libpng%s.%s' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' -- GitLab From 5e90010e50d437f233423b51301f745c334d4c05 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 07:48:20 -0500 Subject: [PATCH 088/845] adding easyconfigs: bzip2-1.0.6-GCCcore-6.4.0.eb --- .../b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..37301419e8 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb @@ -0,0 +1,23 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' + +description = """ + bzip2 is a freely available, patent free, high-quality data compressor. It + typically compresses files to within 10% to 15% of the best available + techniques (the PPM family of statistical compressors), whilst being around + twice as fast at compression and six times faster at decompression. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.bzip.org/%(version)s'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'tools' -- GitLab From 3a808479c0d17fcab5b3177a4d6af23f21871522 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 08:22:04 -0500 Subject: [PATCH 089/845] adding easyconfigs: NASM-2.13.01-GCCcore-6.4.0.eb --- .../n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..cbacaeb62b --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.13.01' + +homepage = 'http://www.nasm.us/' + +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 46c4d09406a8917b77a4f961249daf08e4259bb8 Mon Sep 17 00:00:00 2001 From: Maxime Boissonneault Date: Tue, 11 Jul 2017 13:29:10 +0000 Subject: [PATCH 090/845] added easyconfig for Armadillo 7.950.1 --- ...dillo-7.950.1-intel-2016b-Python-2.7.12.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..ca56813122 --- /dev/null +++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,23 @@ +name = 'Armadillo' +version = '7.950.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://arma.sourceforge.net/' +description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards + a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, + as well as a subset of trigonometric and statistics functions.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = ['http://sourceforge.net/projects/arma/files'] + +dependencies = [ + ('Boost', '1.63.0', versionsuffix), + ('arpack-ng', '3.4.0'), + ('Python', '2.7.12'), +] + +builddependencies = [('CMake', '3.7.2')] + +moduleclass = 'numlib' -- GitLab From aaa1e4096193c5d6668ab36b55d0b1f7b4572f05 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 08:31:28 -0500 Subject: [PATCH 091/845] adding easyconfigs: libffcall-1.13-GCCcore-6.4.0.eb --- .../libffcall/libffcall-1.13-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..703f985fd0 --- /dev/null +++ b/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'libffcall' +version = '1.13' + +homepage = 'https://www.gnu.org/software/libffcall/' + +description = """ + GNU Libffcall is a collection of four libraries which can be used to build + foreign function call interfaces in embedded interpreters +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/avcall.h', 'include/callback.h', 'include/trampoline.h', + 'include/vacall.h', 'lib/libavcall.a', 'lib/libcallback.a', + 'lib/libtrampoline.a', 'lib/libvacall.a'], + 'dirs': [], +} + +parallel = 1 + +moduleclass = 'lib' -- GitLab From cd73627e185e1aec1edbb1986f6dd7d86f92b11f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 08:34:11 -0500 Subject: [PATCH 092/845] adding easyconfigs: muParser-2.2.5-GCCcore-6.4.0.eb --- .../muParser/muParser-2.2.5-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..754dbd44a4 --- /dev/null +++ b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +# Author:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'muParser' +version = '2.2.5' + +homepage = 'http://beltoforion.de/article.php?a=muparser' + +description = """ + muParser is an extensible high performance math expression parser library + written in C++. It works by transforming a mathematical expression into + bytecode and precalculating constant parts of the expression. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +# https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz +source_urls = ['https://github.com/beltoforion/muparser/archive/'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/muParser.h', 'lib/libmuparser.so'], + 'dirs': [], +} + +parallel = 1 + +moduleclass = 'math' -- GitLab From 073e3eddd651925b53c7ab6408bdd7d7b2b91a8d Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 08:36:47 -0500 Subject: [PATCH 093/845] adding easyconfigs: ncompress-4.2.4.4-GCCcore-6.4.0.eb --- .../ncompress-4.2.4.4-GCCcore-6.4.0.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..a000487503 --- /dev/null +++ b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'ncompress' +version = '4.2.4.4' + +homepage = 'http://ncompress.sourceforge.net/' + +description = """ + Compress is a fast, simple LZW file compressor. Compress does not have the + highest compression rate, but it is one of the fastest programs to compress + data. Compress is the defacto standard in the UNIX community for compressing + files. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +# https://github.com/vapier/ncompress/archive/v4.2.4.4.tar.gz +source_urls = ['https://github.com/vapier/ncompress/archive/'] +sources = ['%(name)s-%(version)s.tar.gz'] + +builddependencies = [ + ('binutils', '2.28'), +] + +skipsteps = ['configure'] + +installopts = """\ + DESTDIR=%(installdir)s\ + BINDIR=/bin\ + MANDIR=/man/man1\ +""" + +sanity_check_paths = { + 'files': ['bin/compress', 'man/man1/compress.1'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From fc97836f7b8459c9671013836940d6a2954b61d5 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 08:56:10 -0500 Subject: [PATCH 094/845] adding easyconfigs: Szip-2.1.1-GCCcore-6.4.0.eb --- .../s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8df5fac01e --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' + +description = """ + Szip compression software, providing lossless compression of scientific data +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['897dda94e1d4bf88c91adeaad88c07b468b18eaf2d6125c47acac57e540904a9'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in + ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From a3f7cbfe1588fc83d5c81f8a5f9ca3d070a20b59 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 09:19:49 -0500 Subject: [PATCH 095/845] adding easyconfigs: Yasm-1.3.0-GCCcore-6.4.0.eb --- .../y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..53ab4485ce --- /dev/null +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of +# the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'Yasm' +version = '1.3.0' + +homepage = 'http://www.tortall.net/projects/yasm/' + +description = """ + Yasm: Complete rewrite of the NASM assembler with BSD license +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.tortall.net/projects/yasm/releases/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3dce6601b495f5b3d45b59f7d2492a340ee7e84b5beca17e48f862502bd5603f'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/yasm'], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 3f5989b58bb78f9c77780e824c08a14e337c239c Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 09:34:11 -0500 Subject: [PATCH 096/845] adding easyconfigs: PAPI-5.5.1-GCCcore-6.4.0.eb --- .../p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb | 55 +++++++++++++++++++ 1 file changed, 55 insertions(+) create mode 100644 easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..af271fc244 --- /dev/null +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb @@ -0,0 +1,55 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html +## + +easyblock = 'ConfigureMake' + +name = 'PAPI' +version = '5.5.1' + +homepage = 'http://icl.cs.utk.edu/projects/papi/' + +description = """ + PAPI provides the tool designer and application engineer with a consistent + interface and methodology for use of the performance counter hardware found + in most major microprocessors. PAPI enables software engineers to see, in near + real time, the relation between software performance and processor events. + In addition Component PAPI provides access to a collection of components + that expose performance measurement opportunites across the hardware and + software stack. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://icl.cs.utk.edu/projects/papi/downloads/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['49dc2c2323f6164c4a7e81b799ed690ee73158671205e71501f849391dd2c2d4'] + +builddependencies = [ + ('binutils', '2.28'), +] + +start_dir = 'src' + +parallel = 1 + +runtest = 'fulltest' + +sanity_check_paths = { + 'files': ["bin/papi_%s" % x + for x in ["avail", "clockres", "command_line", "component_avail", + "cost", "decode", "error_codes", "event_chooser", + "mem_info", "multiplex_cost", "native_avail", + "version", "xml_event_info"]], + 'dirs': [], +} + +moduleclass = 'perf' -- GitLab From bb27b5a3e822fdec0721b82bd4737390d7b32e42 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 09:40:56 -0500 Subject: [PATCH 097/845] adding easyconfigs: Mesquite-2.3.0-GCCcore-6.4.0.eb --- .../m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f3e3eb3a99 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb @@ -0,0 +1,16 @@ +easyblock = 'ConfigureMake' + +name = 'Mesquite' +version = '2.3.0' + +homepage = 'https://software.sandia.gov/mesquite/' + +description = """Mesh-Quality Improvement Library""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://software.sandia.gov/mesquite/'] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'math' -- GitLab From 8f152b333af45d8cdd4ca52905e0fa23eec4b6ee Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 09:52:06 -0500 Subject: [PATCH 098/845] adding easyconfigs: ncurses-6.0-GCCcore-6.4.0.eb --- .../n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb | 47 +++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..c4eefc78a1 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb @@ -0,0 +1,47 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' + +description = """ + The Ncurses (new curses) library is a free software emulation of curses in + System V Release 4.0, and more. It uses Terminfo format, supports pads and + color and multiple highlights and forms characters and function-key mapping, + and has all the other SYSV-curses enhancements over BSD Curses. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['ncurses-%(version)s_gcc-5.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", + "infotocap", + "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", + "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.%s' % (x, y, SHLIB_EXT) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' -- GitLab From 55fc01112c068288dd96838d05f814c184407745 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 10:58:56 -0500 Subject: [PATCH 099/845] adding easyconfigs: LibUUID-1.0.3-GCCcore-6.4.0.eb --- .../l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9ba6bc305a --- /dev/null +++ b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'LibUUID' +version = '1.0.3' + +homepage = 'http://sourceforge.net/projects/libuuid/' + +description = """Portable uuid C library""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['46af3275291091009ad7f1b899de3d0cea0252737550e7919d17237997db5644'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/uuid/uuid.h', 'lib/libuuid.a', + 'lib/libuuid.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From b6268ae8e8f642023981351a9d5da2f629f5e75d Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 11:07:35 -0500 Subject: [PATCH 100/845] adding easyconfigs: libtool-2.4.6-GCCcore-6.4.0.eb --- .../l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..2f6e8100a5 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' + +description = """ + GNU libtool is a generic library support script. Libtool hides the complexity + of using shared libraries behind a consistent, portable interface. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lib' -- GitLab From 5accbaa8a2259be104cb9497c3b3838f0abf27f2 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 11:20:14 -0500 Subject: [PATCH 101/845] adding easyconfigs: expat-2.2.1-GCCcore-6.4.0.eb --- .../e/expat/expat-2.2.1-GCCcore-6.4.0.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..87f8150c28 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.2.1' + +homepage = 'http://expat.sourceforge.net/' + +description = """ + Expat is an XML parser library written in C. It is a stream-oriented parser + in which an application registers handlers for things the parser might find + in the XML document (like start tags) +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['1868cadae4c82a018e361e2b2091de103cd820aaacb0d6cfa49bd2cd83978885'] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'tools' -- GitLab From d8a7b01534d97da3a402edd8b1770c54bc10344f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 11:26:55 -0500 Subject: [PATCH 102/845] adding easyconfigs: gzip-1.8-GCCcore-6.4.0.eb --- .../g/gzip/gzip-1.8-GCCcore-6.4.0.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..fc8158dc1a --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.8' + +homepage = 'http://www.gnu.org/software/gzip/' + +description = """ + gzip (GNU zip) is a popular data compression program as + a replacement for compress +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' -- GitLab From 7c6ea8e8415790bcaea6a254d1b307ac121233fa Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 12:06:41 -0500 Subject: [PATCH 103/845] adding easyconfigs: libspatialindex-1.8.5-GCCcore-6.4.0.eb --- .../libspatialindex-1.8.5-GCCcore-6.4.0.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..127c1cea1b --- /dev/null +++ b/easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libspatialindex' +version = '1.8.5' + +homepage = 'http://libspatialindex.github.io' + +description = """ + C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://download.osgeo.org/libspatialindex/'] +sources = ['spatialindex-src-%(version)s.tar.gz'] +checksums = ['7caa46a2cb9b40960f7bc82c3de60fa14f8f3e000b02561b36cbf2cfe6a9bfef'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['lib/libspatialindex.a', 'lib/libspatialindex.%s' % SHLIB_EXT], + 'dirs': ['include/spatialindex'], +} + +moduleclass = 'lib' -- GitLab From 0ba557815ac618e6ac298b05b2f055a11db78c90 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 12:23:26 -0500 Subject: [PATCH 104/845] adding easyconfigs: DB-6.2.32-GCCcore-6.4.0.eb --- .../d/DB/DB-6.2.32-GCCcore-6.4.0.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..076d25e019 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +name = 'DB' +version = '6.2.32' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' + +description = """ + Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, requires registration +sources = [SOURCELOWER_TAR_GZ] +checksums = ['a9c5e2b004a5777aa03510cfe5cd766a4a3b777713406b02809c17c8e0e7a8fb'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["include/db.h"], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 7ea16f5cb288d60db25eaa6b8d28f10ea6044216 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 12:38:32 -0500 Subject: [PATCH 105/845] adding easyconfigs: libsodium-1.0.12-GCCcore-6.4.0.eb --- .../libsodium-1.0.12-GCCcore-6.4.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..927f15bb68 --- /dev/null +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libsodium' +version = '1.0.12' + +homepage = 'http://doc.libsodium.org/' + +description = """ + Sodium is a modern, easy-to-use software library for encryption, decryption, + signatures, password hashing and more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://download.libsodium.org/libsodium/releases/'] +sources = [SOURCE_TAR_GZ] +checksums = ['b8648f1bb3a54b0251cf4ffa4f0d76ded13977d4fa7517d988f4c902dd8e2f95'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/sodium.h', 'lib/libsodium.so', 'lib/libsodium.a'], + 'dirs': ['include/sodium', 'lib/pkgconfig'], +} + +moduleclass = 'lib' -- GitLab From 37572be522de100feaf2d3ea1c4540839b511e64 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 12:51:11 -0500 Subject: [PATCH 106/845] adding easyconfigs: GSL-2.4-GCCcore-6.4.0.eb --- .../g/GSL/GSL-2.4-GCCcore-6.4.0.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..4ea2f3d1a3 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '2.4' + +homepage = 'http://www.gnu.org/software/gsl/' + +description = """ + The GNU Scientific Library (GSL) is a numerical library for C and C++ + programmers. The library provides a wide range of mathematical routines + such as random number generators, special functions and least-squares fitting. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'numlib' -- GitLab From 4bbb276adc2e4cf86ae6400165dde5b08591d787 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 13:04:18 -0500 Subject: [PATCH 107/845] adding easyconfigs: Autoconf-2.69-GCCcore-6.4.0.eb --- .../a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..6574fccdb0 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' + +description = """ + Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can + adapt the packages to many kinds of UNIX-like systems without manual user + intervention. Autoconf creates a configuration script for a package from a + template file that lists the operating system features that the package can + use, in the form of M4 macro calls. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x + for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 188586bb59e096d70b4ebd5d1af9953b28b3d285 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 15:01:26 -0500 Subject: [PATCH 108/845] adding easyconfigs: pixman-0.34.0-GCCcore-6.4.0.eb --- .../p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..5f58c9f25c --- /dev/null +++ b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = "pixman" +version = '0.34.0' + +homepage = 'http://www.pixman.org/' + +description = """ + Pixman is a low-level software library for pixel manipulation, providing + features such as image compositing and trapezoid rasterization. Important + users of pixman are the cairo graphics library and the X server. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'vis' -- GitLab From 6cf827bacd4ec898d8b2743ec19f623e3e1848a3 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 15:13:14 -0500 Subject: [PATCH 109/845] adding easyconfigs: byacc-20170709-GCCcore-6.4.0.eb --- .../b/byacc/byacc-20170709-GCCcore-6.4.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..64ac3adea0 --- /dev/null +++ b/easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'byacc' +version = '20170709' + +homepage = 'http://invisible-island.net/byacc/byacc.html' + +description = """ + Berkeley Yacc (byacc) is generally conceded to be the best yacc variant + available. In contrast to bison, it is written to avoid dependencies + upon a particular compiler. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['ftp://invisible-island.net/byacc'] +sources = [SOURCELOWER_TGZ] +checksums = ['27cf801985dc6082b8732522588a7b64377dd3df841d584ba6150bc86d78d9eb'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["bin/yacc"], + 'dirs': [] +} + +moduleclass = 'lang' -- GitLab From 8f8ffe4780cb744445ba2ba888633d3e6cb55912 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 11 Jul 2017 15:44:49 -0500 Subject: [PATCH 110/845] adding easyconfigs: libpthread-stubs-0.4-GCCcore-6.4.0.eb --- .../libpthread-stubs-0.4-GCCcore-6.4.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f65b67ddd6 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.4' + +homepage = 'http://xcb.freedesktop.org/' + +description = """ + The X protocol C-language Binding (XCB) is a replacement for Xlib featuring + a small footprint, latency hiding, direct access to the protocol, improved + threading support, and extensibility. +""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +builddependencies = [ + ('binutils','2.28'), +] + +sanity_check_paths = { + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From e1dab4351bcf8ad75383439ada951bc392c0a81d Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 22:39:26 +0100 Subject: [PATCH 111/845] Update to new upstream release and add checksum --- .../p/picard/picard-2.10.1-Java-1.8.0_131.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100755 easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb diff --git a/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb new file mode 100755 index 0000000000..3495cd4e50 --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb @@ -0,0 +1,40 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +# 2.10.1: +# Adam Huffman +# The Francis Crick Institute +# +## + +easyblock = 'JAR' + +name = 'picard' +version = '2.10.1' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] +sources = ['%(name)s.jar'] + +dependencies = [('Java', '1.8.0_131')] + +checksums = [('sha256', 'e256d5e43656b7d8be454201a7056dce543fe9cbeb30329a0d8c22d28e655775')] + +sanity_check_paths = { + 'files': ['picard.jar'], + 'dirs': [], +} + +modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" + +moduleclass = 'bio' -- GitLab From 4b7723372aa2d45bd891f8e2faed54b2a2a44362 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 22:41:12 +0100 Subject: [PATCH 112/845] Add checksum --- easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb index 281b0c7c59..a7676529fe 100755 --- a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb @@ -27,6 +27,8 @@ sources = ['%(name)s.jar'] dependencies = [('Java', '1.8.0_131')] +checksums = [('sha256', '671d9e86e6bf0c28ee007aea55d07e2456ae3a57016491b50aab0fd2fd0e493b')] + sanity_check_paths = { 'files': ['picard.jar'], 'dirs': [], -- GitLab From d239678acd341d12ef9780007d7273d6fd89c874 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 23:03:45 +0100 Subject: [PATCH 113/845] Move checksum --- .../easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb | 4 ++-- easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb index 3495cd4e50..e69580f5e4 100755 --- a/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb @@ -26,10 +26,10 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] sources = ['%(name)s.jar'] -dependencies = [('Java', '1.8.0_131')] - checksums = [('sha256', 'e256d5e43656b7d8be454201a7056dce543fe9cbeb30329a0d8c22d28e655775')] +dependencies = [('Java', '1.8.0_131')] + sanity_check_paths = { 'files': ['picard.jar'], 'dirs': [], diff --git a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb index a7676529fe..674512ad38 100755 --- a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb @@ -25,10 +25,10 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] sources = ['%(name)s.jar'] -dependencies = [('Java', '1.8.0_131')] - checksums = [('sha256', '671d9e86e6bf0c28ee007aea55d07e2456ae3a57016491b50aab0fd2fd0e493b')] +dependencies = [('Java', '1.8.0_131')] + sanity_check_paths = { 'files': ['picard.jar'], 'dirs': [], -- GitLab From fecac8b65510995ed52737dc0c2c0176476f322a Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 11 Jul 2017 23:15:23 +0100 Subject: [PATCH 114/845] Remove obsolete 2.10.0 --- .../p/picard/picard-2.10.0-Java-1.8.0_131.eb | 38 ------------------- 1 file changed, 38 deletions(-) delete mode 100755 easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb diff --git a/easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb deleted file mode 100755 index 170d1a3b37..0000000000 --- a/easybuild/easyconfigs/p/picard/picard-2.10.0-Java-1.8.0_131.eb +++ /dev/null @@ -1,38 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exe Escobedo -# License:: MIT -# -# 2.10.0: -# Adam Huffman -# The Francis Crick Institute -# -## - -easyblock = 'JAR' - -name = 'picard' -version = '2.10.0' -versionsuffix = '-Java-%(javaver)s' - -homepage = 'http://sourceforge.net/projects/picard' -description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] -sources = ['%(name)s.jar'] - -dependencies = [('Java', '1.8.0_131')] - -sanity_check_paths = { - 'files': ['picard.jar'], - 'dirs': [], -} - -modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" - -moduleclass = 'bio' -- GitLab From 2b094023d93f00574d96d9510acb47608bd983b7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 12 Jul 2017 07:34:59 +0200 Subject: [PATCH 115/845] bump version to 3.3.1 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 2ea811fb80..8b55846bb7 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.3.1.dev0' +VERSION = '3.3.1' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From a152d7eda20b2cabbb759d2f7ea5d9169e8e5cfb Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Wed, 12 Jul 2017 08:30:20 +0200 Subject: [PATCH 116/845] adding easyconfigs: Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb, protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb, protobuf-3.3.0-foss-2016b.eb --- ...uf-python-3.3.0-foss-2016b-Python-3.5.2.eb | 29 +++++++++++ .../p/protobuf/protobuf-3.3.0-foss-2016b.eb | 23 +++++++++ ...ensorflow-1.2.1-foss-2016b-Python-3.5.2.eb | 51 +++++++++++++++++++ 3 files changed, 103 insertions(+) create mode 100644 easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb create mode 100755 easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb create mode 100755 easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb diff --git a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb new file mode 100644 index 0000000000..59e1c3f2a3 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,29 @@ +easyblock = 'PythonPackage' + +name = 'protobuf-python' +version = '3.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/google/protobuf/' +description = """Python Protocol Buffers runtime library.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '3.5.2'), + ('protobuf', version) +] + +start_dir = 'python' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +options = {'modulename': 'google.protobuf'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb b/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb new file mode 100755 index 0000000000..c0f51b2532 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'protobuf' +version = '3.3.0' + +homepage = 'https://github.com/google/protobuf/' +description = """Google Protocol Buffers""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': ['bin/protoc', 'lib/libprotobuf.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb new file mode 100755 index 0000000000..5c08028478 --- /dev/null +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,51 @@ +easyblock = 'Bundle' + +name = 'Tensorflow' +version = '1.2.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.tensorflow.org/' +description = "An open-source software library for Machine Intelligence" + +toolchain = {'name': 'foss', 'version': '2016b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +pyver = '3.5.2' +pyshortver = '35' + +dependencies = [ + ('Python', pyver), + ('protobuf-python', '3.3.0', versionsuffix), +] + +exts_list = [ + ('backports.weakref', '1.0rc1', { + 'modulename': 'backports.weakref', + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.weakref'], + }), + ('Werkzeug', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/w/Werkzeug'], + }), + ('tensorflow', version, { + 'source_urls': ['https://pypi.python.org/packages/source/t/tensorflow'], + 'source_tmpl': 'tensorflow-%%(version)s-cp%(pyshortver)s-cp%(pyshortver)sm-manylinux1_x86_64.whl' % + {'pyshortver': pyshortver}, + 'checksums': ['d42e7a5c522bff59f0d3f5e28fca3dda11bad981a7aa4d777d1f1684700d2a06'], + 'use_pip': True, + 'unpack_sources': False, + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/tensorboard'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'lib' -- GitLab From df48ba2c1ea46aad632f7067bd3d47b18162ba35 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 12 Jul 2017 11:14:16 +0200 Subject: [PATCH 117/845] adding easyconfigs: cadaver-0.23.3-intel-2017a.eb --- .../c/cadaver/cadaver-0.23.3-intel-2017a.eb | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb diff --git a/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb b/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb new file mode 100644 index 0000000000..0d2c3a61b1 --- /dev/null +++ b/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'cadaver' +version = '0.23.3' + +homepage = 'http://www.webdav.org/cadaver/' +description = "cadaver is a command-line WebDAV client for Unix." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.webdav.org/cadaver/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/cadaver'], + 'dirs': ['share/man'], +} + +moduleclass = 'tools' -- GitLab From e711a75ad462f1bbfbd5d1adb7c0fd8dfca98250 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 12 Jul 2017 11:48:37 +0200 Subject: [PATCH 118/845] bump version to 3.4.0.dev0 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 8b55846bb7..2d468796a8 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.3.1' +VERSION = '3.4.0.dev0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 599c37fec698a971c7996f79c65b0d138e671436 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 12 Jul 2017 13:42:56 +0200 Subject: [PATCH 119/845] adding easyconfigs: EasyBuild-3.3.1.eb --- .../e/EasyBuild/EasyBuild-3.3.1.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb new file mode 100644 index 0000000000..38ca592d16 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb @@ -0,0 +1,38 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '3.3.1' + +homepage = 'https://easybuilders.github.io/easybuild' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + # vsc-install + 'https://pypi.python.org/packages/82/ec/19d85d2bb91b562195d00db9ac82d7529904e7eabc0597720966bf74714f/', + # vsc-base + 'https://pypi.python.org/packages/f7/66/1ff7ecc4a93ba37e063f5bfbe395e95a547b1dec73b017c2724f4475a958/', + # easybuild-framework + 'https://pypi.python.org/packages/5b/1e/26bcb7c4407a68b22bd545014bf5536c4f3c4b196bc0467b008d848008da', + # easybuild-easyblocks + 'https://pypi.python.org/packages/7c/03/0ca88b299508689eea650652f5188f9f03d8fc3001670ad37885e71b6e4f', + # easybuild-easyconfigs + 'https://pypi.python.org/packages/57/d0/d5683dbb6aca7dfd2f39f38be9f11252177012ef894dfdf2b19e70eddf44', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-install-0.10.26.tar.gz', + 'vsc-base-2.5.8.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 875c1ba5366326e387cf54f6c77ec96d93942e3b Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 12 Jul 2017 12:53:37 +0100 Subject: [PATCH 120/845] adding easyconfigs: cadaver-0.23.3-intel-2017a.eb --- easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb | 2 ++ 1 file changed, 2 insertions(+) mode change 100644 => 100755 easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb diff --git a/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb b/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb old mode 100644 new mode 100755 index 0d2c3a61b1..860d309726 --- a/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb +++ b/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb @@ -11,6 +11,8 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://www.webdav.org/cadaver/'] sources = [SOURCE_TAR_GZ] +checksums = ['fd4ce68a3230ba459a92bcb747fc6afa91e46d803c1d5ffe964b661793c13fca'] + sanity_check_paths = { 'files': ['bin/cadaver'], 'dirs': ['share/man'], -- GitLab From 46f7cd85922fb164216b84d8115c8fcad6660cef Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 08:31:54 -0500 Subject: [PATCH 121/845] add checksum --- easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb index 37301419e8..e4b34a6f11 100644 --- a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb @@ -12,6 +12,7 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} +checksums = ['a2848f34fcd5d6cf47def00461fcb528a0484d8edef8208d6d2e2909dc61d9cd'] source_urls = ['http://www.bzip.org/%(version)s'] sources = [SOURCE_TAR_GZ] -- GitLab From 689e8f8ffef0dad21b24ae37b1579021ccd4eb2f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 08:40:25 -0500 Subject: [PATCH 122/845] edits and add checksum --- easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb index cbacaeb62b..a992c888d4 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -20,10 +20,10 @@ homepage = 'http://www.nasm.us/' description = """NASM: General-purpose x86 assembler""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] sources = [SOURCELOWER_TAR_BZ2] +checksums = ['08f97baf0a7f892128c6413cfa93b69dc5825fbbd06c70928aea028835d198fa'] builddependencies = [ ('binutils', '2.28'), -- GitLab From fc9c539ca126e84f40090aacb5af08b7b426d4c1 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 08:47:23 -0500 Subject: [PATCH 123/845] add checksum --- .../easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb index 703f985fd0..336a7eca3d 100644 --- a/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb @@ -17,6 +17,7 @@ toolchainopts = {'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['1707ce707dbbf57f1bbe9aa56929c0da866046b0d5a26eb0d96d9f0bb29bbce7'] builddependencies = [ ('binutils', '2.28'), -- GitLab From 9c79e99bf7928d6f9c786e9f09fcabdda70306f4 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 09:22:20 -0500 Subject: [PATCH 124/845] edits and add checksum --- .../m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb index 754dbd44a4..915de6c6ce 100644 --- a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb @@ -1,5 +1,3 @@ -# Author:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu - easyblock = 'ConfigureMake' name = 'muParser' @@ -19,16 +17,17 @@ toolchainopts = {'pic': True} # https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz source_urls = ['https://github.com/beltoforion/muparser/archive/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['0666ef55da72c3e356ca85b6a0084d56b05dd740c3c21d26d372085aa2c6e708'] builddependencies = [ ('binutils', '2.28'), ] +configopts = "--disable-samples --enable-shared" + sanity_check_paths = { - 'files': ['include/muParser.h', 'lib/libmuparser.so'], + 'files': ['include/muParser.h', 'lib/libmuparser.%s' %SHLIB_EXT], 'dirs': [], } -parallel = 1 - moduleclass = 'math' -- GitLab From 71980e5c4b2c186d0e7066e4af0f649a5903d654 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 12 Jul 2017 15:31:10 +0100 Subject: [PATCH 125/845] Create versioned source file and move to unversioned for the runtime copy --- .../easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb | 9 +++++++-- .../easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb | 9 ++++++++- 2 files changed, 15 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb index e69580f5e4..ab38eef7a5 100755 --- a/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb @@ -24,9 +24,14 @@ description = """A set of tools (in Java) for working with next generation seque toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] -sources = ['%(name)s.jar'] +sources = [{ + 'filename': '%(name)s-%(version)s.jar', + 'download_filename': '%(name)s.jar', +}] -checksums = [('sha256', 'e256d5e43656b7d8be454201a7056dce543fe9cbeb30329a0d8c22d28e655775')] +checksums = ['ace0de725f7dbf3a1f621ac146e205b41bc872a0bdc700cf687124740fb60412'] + +postinstallcmds = [' mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar'] dependencies = [('Java', '1.8.0_131')] diff --git a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb index 674512ad38..f2d7251544 100755 --- a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb @@ -25,7 +25,14 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] sources = ['%(name)s.jar'] -checksums = [('sha256', '671d9e86e6bf0c28ee007aea55d07e2456ae3a57016491b50aab0fd2fd0e493b')] +sources = [{ + 'filename': '%(name)s-%(version)s.jar', + 'download_filename': '%(name)s.jar', +}] + +checksums = ['671d9e86e6bf0c28ee007aea55d07e2456ae3a57016491b50aab0fd2fd0e493b'] + +postinstallcmds = [' mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar'] dependencies = [('Java', '1.8.0_131')] -- GitLab From e94c16366aef8249db878d49e4f349b58f71d230 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 09:32:05 -0500 Subject: [PATCH 126/845] cleanup and add checksum --- .../easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb index a000487503..a9b3d371a0 100644 --- a/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb @@ -16,9 +16,9 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -# https://github.com/vapier/ncompress/archive/v4.2.4.4.tar.gz source_urls = ['https://github.com/vapier/ncompress/archive/'] sources = ['%(name)s-%(version)s.tar.gz'] +checksums = ['2670439935e7639c3a767087da99810e45bc3997d0638b3094396043571e5aec'] builddependencies = [ ('binutils', '2.28'), -- GitLab From 7e945a3421406121e5ac9c9aebe16a05b34bab91 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 09:40:17 -0500 Subject: [PATCH 127/845] cleanup --- easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb index 8df5fac01e..98b8e0cf48 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb @@ -22,8 +22,7 @@ builddependencies = [ sanity_check_paths = { 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + - ["include/%s" % x for x in - ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } -- GitLab From 58cd5d05e7226cfd0e5099b955e1b8d2ffdc8742 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 09:55:49 -0500 Subject: [PATCH 128/845] cleanup --- easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb index 53ab4485ce..691d1170d5 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -17,9 +17,7 @@ version = '1.3.0' homepage = 'http://www.tortall.net/projects/yasm/' -description = """ - Yasm: Complete rewrite of the NASM assembler with BSD license -""" +description = """Yasm: Complete rewrite of the NASM assembler with BSD license""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -- GitLab From 05ef2db0b1b76c5635076e836d28897e3707a661 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 12 Jul 2017 17:06:54 +0200 Subject: [PATCH 129/845] adding easyconfigs: vsc-mympirun-4.0.1.eb --- .../v/vsc-mympirun/vsc-mympirun-4.0.1.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100755 easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb new file mode 100755 index 0000000000..5e6aaec33a --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'vsc-mympirun' +version = '4.0.1' + +homepage = 'https://github.com/hpcugent/vsc-mympirun' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['b5b08e6291a68802d29c344d5807e4c2a1945375055b57c819721151775789f0'] + +builddependencies = [('vsc-install', '0.10.26')] +dependencies = [('vsc-base', '2.5.8')] + +osdependencies = ['python-setuptools'] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +# don't check for import of vsc.mympirun, since that may fail if vsc-base is picked up from the OS +options = {'modulename': 'vsc'} + +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[:2]) +sanity_check_paths = { + 'files': ['bin/mympirun', 'bin/mympisanity'], + 'dirs': ['bin/fake', 'lib/python%s/site-packages' % pyshortver], +} +sanity_check_commands = ["mympirun --help"] + +moduleclass = 'tools' -- GitLab From d4fd3ae511ea33e8783fbd386892b051e1f036fa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 12 Jul 2017 17:49:08 +0200 Subject: [PATCH 130/845] use single-line description in setup.py --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 2d468796a8..49f7189df7 100644 --- a/setup.py +++ b/setup.py @@ -104,7 +104,7 @@ setup( version = VERSION, author = "EasyBuild community", author_email = "easybuild@lists.ugent.be", - description = """Easyconfig files are simple build specification files for EasyBuild, + description = """Easyconfig files are simple build specification files for EasyBuild, \ that specify the build parameters for software packages (version, compiler toolchain, dependency \ versions, etc.).""", license = "GPLv2", -- GitLab From 05b56fd157e1f8c3189657a4d6a4200209730694 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 11:04:51 -0500 Subject: [PATCH 131/845] update EB URL --- easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb index af271fc244..19d05f8452 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos -- GitLab From 8e039123b500e97895da8deda4fcb9f9ea635c96 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 11:12:22 -0500 Subject: [PATCH 132/845] add checksum --- easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb index f3e3eb3a99..b48cf2aa8f 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb @@ -12,5 +12,6 @@ toolchainopts = {'pic': True} source_urls = ['https://software.sandia.gov/mesquite/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['4ab4ceadfa596e16c00dbb0e8b830a9112fa1b73291ca07633ec379a39b8bb28'] moduleclass = 'math' -- GitLab From 9afe523875f44516cafb53bd3a0dc7fd07a2e09d Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 11:16:17 -0500 Subject: [PATCH 133/845] add checksum --- easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb index c4eefc78a1..0ee6b52eeb 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb @@ -17,6 +17,7 @@ toolchainopts = {'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['f551c24b30ce8bfb6e96d9f59b42fbea30fa3a6123384172f9e7284bcf647260'] patches = ['ncurses-%(version)s_gcc-5.patch'] -- GitLab From d3d0cc6b9d59519fbe578324b2fec65b0fcb8ab4 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 11:24:42 -0500 Subject: [PATCH 134/845] add checksum --- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb index 2f6e8100a5..bc5c6cb40c 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] builddependencies = [ ('binutils', '2.28'), -- GitLab From edaed19af3fb64227be2ab9ae3c25faa21c396b2 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 11:38:42 -0500 Subject: [PATCH 135/845] add checksum --- easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb index fc8158dc1a..fcd38e2364 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['1ff7aedb3d66a0d73f442f6261e4b3860df6fd6c94025c2cb31a202c9c60fe0e'] sanity_check_paths = { 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], -- GitLab From 1180e84291b36a4c4ed76fc16f6e05316e8a728d Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 12:03:04 -0500 Subject: [PATCH 136/845] maintain sanity --- easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb index 076d25e019..7182e6afe1 100644 --- a/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb @@ -10,7 +10,8 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, requires registration +# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, +# requires registration sources = [SOURCELOWER_TAR_GZ] checksums = ['a9c5e2b004a5777aa03510cfe5cd766a4a3b777713406b02809c17c8e0e7a8fb'] @@ -19,7 +20,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files': ["include/db.h"], + 'files': ['bin/db_archive', 'include/db.h', 'lib/libdb.a', + 'lib/libdb.%s' % SHLIB_EXT], 'dirs': [], } -- GitLab From 844a1c5a147387eccf4ebb7784e3ec3e57cec5a7 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 12:24:59 -0500 Subject: [PATCH 137/845] add checksum --- easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb index 6574fccdb0..741c36b430 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb @@ -18,6 +18,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] builddependencies = [ ('binutils', '2.28'), -- GitLab From 0ca4803546c93bd4c41a90b7d1019a88e3e1a439 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 12:44:19 -0500 Subject: [PATCH 138/845] add checksum --- easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb index 5f58c9f25c..9fb2609138 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb @@ -15,6 +15,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] +checksums = ['21b6b249b51c6800dc9553b65106e1e37d0e25df942c90531d4c3997aa20a88e'] builddependencies = [ ('binutils', '2.28'), -- GitLab From f7dcd08e2054af6d6aceb8c1b616fd9cef0a4245 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 12:48:21 -0500 Subject: [PATCH 139/845] add checksum --- .../l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb index f65b67ddd6..f5302ea370 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb @@ -18,7 +18,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} builddependencies = [ - ('binutils','2.28'), + ('binutils', '2.28'), ] sanity_check_paths = { -- GitLab From 62a3d90a39970bec28bfb2c07b8349b17fe990d2 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 12:53:49 -0500 Subject: [PATCH 140/845] really this time, add checksums --- .../l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb index f5302ea370..64f2cd1602 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb @@ -13,6 +13,7 @@ description = """ source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['50d5686b79019ccea08bcbd7b02fe5a40634abcfd4146b6e75c6420cc170e9d9'] toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} -- GitLab From 7821ecb9619ef1e35b1424d26aa71770380cb5f5 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 22:47:03 -0500 Subject: [PATCH 141/845] pigz and patch --- .../p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb | 42 +++++++++++++++++++ .../p/pigz/pigz-2.3.4_Makefile.patch | 17 ++++++++ 2 files changed, 59 insertions(+) create mode 100644 easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..4b0af18f75 --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'pigz' +version = '2.3.4' + +homepage = 'http://zlib.net/pigz/' + +description = """ + pigz, which stands for parallel implementation of gzip, is a fully + functional replacement for gzip that exploits multiple processors and multiple + cores to the hilt when compressing data. pigz was written by Mark Adler, and + uses the zlib and pthread libraries. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://zlib.net/pigz/'] +sources = [SOURCE_TAR_GZ] +checksums = ['6f031fa40bc15b1d80d502ff91f83ba14f4b079e886bfb83221374f7bf5c8f9a'] + +# Patch Makefile so zlib provided by EasyBuild is picked up +patches = ['%(name)s-%(version)s_Makefile.patch'] + +dependencies = [ + ('zlib', '1.2.11'), +] + +parallel = 1 + +files_to_copy = [(["pigz", "unpigz"], "bin")] + +sanity_check_paths = { + 'files': ['bin/pigz', 'bin/unpigz'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch b/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch new file mode 100644 index 0000000000..05008c1033 --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch @@ -0,0 +1,17 @@ +--- Makefile.orig 2017-07-12 22:16:56.931252958 -0500 ++++ Makefile 2017-07-12 22:25:34.472386094 -0500 +@@ -1,12 +1,11 @@ +-CC=cc +-CFLAGS=-O3 -Wall -Wextra ++ZLIB=-L$(EBROOTZLIB)/lib + LDFLAGS= + LIBS=-lm -lpthread -lz + ZOPFLI=zopfli/src/zopfli/ + # use gcc and gmake on Solaris + + pigz: pigz.o yarn.o try.o ${ZOPFLI}deflate.o ${ZOPFLI}blocksplitter.o ${ZOPFLI}tree.o ${ZOPFLI}lz77.o ${ZOPFLI}cache.o ${ZOPFLI}hash.o ${ZOPFLI}util.o ${ZOPFLI}squeeze.o ${ZOPFLI}katajainen.o +- $(CC) $(LDFLAGS) -o pigz $^ $(LIBS) ++ $(CC) $(LDFLAGS) -o pigz $^ $(ZLIB) $(LIBS) + ln -f pigz unpigz + + pigz.o: pigz.c yarn.h try.h ${ZOPFLI}deflate.h ${ZOPFLI}util.h -- GitLab From a75d1e7c0c30290cf695b666cc90fa51bd7b13cc Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 23:19:26 -0500 Subject: [PATCH 142/845] fix URL fail --- easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb index 4b0af18f75..0042955a0b 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -- GitLab From 3dce9cfcebc9337afd45f218818a45ad1ecee22e Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 12 Jul 2017 23:24:54 -0500 Subject: [PATCH 143/845] adding easyconfigs: CMake-3.8.2-GCCcore-6.4.0.eb --- .../c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb | 38 +++++++++++++++ .../n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb | 48 +++++++++++++++++++ 2 files changed, 86 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..84630972bf --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.8.2' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['da3072794eb4c09f2d782fcee043847b99bb4cf8d4573978d9b2024214d6e92d'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..0ee6b52eeb --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' + +description = """ + The Ncurses (new curses) library is a free software emulation of curses in + System V Release 4.0, and more. It uses Terminfo format, supports pads and + color and multiple highlights and forms characters and function-key mapping, + and has all the other SYSV-curses enhancements over BSD Curses. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f551c24b30ce8bfb6e96d9f59b42fbea30fa3a6123384172f9e7284bcf647260'] + +patches = ['ncurses-%(version)s_gcc-5.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", + "infotocap", + "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", + "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.%s' % (x, y, SHLIB_EXT) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' -- GitLab From 95d04f57d80eba01f7ee9bc9f96abd6d8b364cfc Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 00:29:53 -0500 Subject: [PATCH 144/845] add binutils --- .../easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb index b48cf2aa8f..bf18a3528d 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb @@ -14,4 +14,8 @@ source_urls = ['https://software.sandia.gov/mesquite/'] sources = [SOURCELOWER_TAR_GZ] checksums = ['4ab4ceadfa596e16c00dbb0e8b830a9112fa1b73291ca07633ec379a39b8bb28'] +builddependencies = [ + ('binutils', '2.28'), +] + moduleclass = 'math' -- GitLab From 267b906f2b2dd9a648d0b44e8d8689798c416dbf Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 01:10:28 -0500 Subject: [PATCH 145/845] adding easyconfigs: gc-7.6.0-GCCcore-6.4.0.eb --- .../g/gc/gc-7.6.0-GCCcore-6.4.0.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..aa7d33f680 --- /dev/null +++ b/easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'gc' +version = '7.6.0' + +homepage = 'http://hboehm.info/gc/' + +description = """ + The Boehm-Demers-Weiser conservative garbage collector can be used as a + garbage collecting replacement for C malloc or C++ new. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [ + 'http://hboehm.info/gc/gc_source/', + 'https://github.com/ivmai/libatomic_ops/releases/download/v7.4.6/', +] +sources = [ + SOURCE_TAR_GZ, + 'libatomic_ops-7.4.6.tar.gz', +] +checksums = [ + 'a14a28b1129be90e55cd6f71127ffc5594e1091d5d54131528c24cd0c03b7d90', + '96e88ba450ae5fa10aa8e94e6b151a63ffbe47f8069574bd12da22ae80c686db', +] + +builddependencies = [ + ('binutils', '2.28'), +] + +preconfigopts = 'ln -s %(builddir)s/libatomic_ops*/ libatomic_ops && ' + +sanity_check_paths = { + 'files': ['include/gc.h', 'lib/libcord.a', 'lib/libcord.%s' % SHLIB_EXT, + 'lib/libgc.a', 'lib/libgc.%s' % SHLIB_EXT], + 'dirs': ['include/gc', 'share'], +} + +moduleclass = 'lib' -- GitLab From 04e4a0bc1bcbb8612c080143bccce49073a8160f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 01:42:05 -0500 Subject: [PATCH 146/845] adding easyconfigs: cURL-7.54.1-GCCcore-6.4.0.eb --- .../c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..0c330ab8c8 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.54.1' + +homepage = 'http://curl.haxx.se' + +description = """ + libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, + LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. + libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP + form based upload, proxies, cookies, user+password authentication (Basic, + Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling + and more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://curl.haxx.se/download/'] +sources = [SOURCELOWER_TAR_GZ] + +osdependencies = [ + ('libssh2-devel'), + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--with-libssh2 --with-zlib' + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' -- GitLab From 18c0ed1bc962eddef6fabf77445c1db9ec47ac63 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 02:13:46 -0500 Subject: [PATCH 147/845] adding easyconfigs: libreadline-7.0-GCCcore-6.4.0.eb --- .../libreadline-7.0-GCCcore-6.4.0.eb | 43 +++++++++++++++++ .../n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb | 48 +++++++++++++++++++ 2 files changed, 91 insertions(+) create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..b26a32205d --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '7.0' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' + +description = """ + The GNU Readline library provides a set of functions for use by applications + that allow users to edit command lines as they are typed in. Both Emacs and + vi editing modes are available. The Readline library includes additional + functions to maintain a list of previously-entered command lines, to recall + and perhaps reedit those lines, and perform csh-like history expansion on + previous commands. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://ftp.gnu.org/gnu/readline'] +sources = ['readline-%(version)s.tar.gz'] +checksums = ['750d437185286f40a369e1e4f4764eda932b9459b5ec9a731628393dd3d32334'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +# for the termcap symbols, use EB ncurses +preconfigopts = "env LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x + for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', + 'rlconf.h', 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..0ee6b52eeb --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' + +description = """ + The Ncurses (new curses) library is a free software emulation of curses in + System V Release 4.0, and more. It uses Terminfo format, supports pads and + color and multiple highlights and forms characters and function-key mapping, + and has all the other SYSV-curses enhancements over BSD Curses. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f551c24b30ce8bfb6e96d9f59b42fbea30fa3a6123384172f9e7284bcf647260'] + +patches = ['ncurses-%(version)s_gcc-5.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", + "infotocap", + "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", + "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.%s' % (x, y, SHLIB_EXT) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' -- GitLab From 9b25022eb3400b38202d3a31baea829ec1f3f01f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 02:25:59 -0500 Subject: [PATCH 148/845] toss SSH --- easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb index 0c330ab8c8..cc57b35bc9 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb @@ -21,7 +21,6 @@ source_urls = ['http://curl.haxx.se/download/'] sources = [SOURCELOWER_TAR_GZ] osdependencies = [ - ('libssh2-devel'), ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), ] @@ -33,7 +32,7 @@ dependencies = [ ('zlib', '1.2.11'), ] -configopts = '--with-libssh2 --with-zlib' +configopts = '--with-zlib' modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} -- GitLab From 41d89ea5d2185498b6eb326f416e368a3f63fd72 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 13 Jul 2017 11:27:34 +0200 Subject: [PATCH 149/845] fix version and source for Seurat (use sources, not binary release), add extensions required by Seurat in R 3.4.0 easyconfig --- .../easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 7 +++++++ ...R-3.4.0.eb => Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb} | 9 ++++++--- 2 files changed, 13 insertions(+), 3 deletions(-) rename easybuild/easyconfigs/s/Seurat/{Seurat-1.4.0-intel-2017a-R-3.4.0.eb => Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb} (70%) diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 78bdaaa928..10a1470cb3 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -528,6 +528,13 @@ exts_list = [ ('ucminf', '1.1-4', ext_options), ('ordinal', '2015.6-28', ext_options), ('Rtsne', '0.13', dict(ext_options.items() + [('patches', ['Rtsne-0.13_icpc-wd308.patch'])])), + ('cowplot', '0.7.0', ext_options), + ('tsne', '0.1-3', ext_options), + ('pbapply', '1.3-3', ext_options), + ('RcppProgress', '0.3', ext_options), + ('sn', '1.5-0', ext_options), + ('tclust', '1.2-7', ext_options), + ('ranger', '0.8.0', ext_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb similarity index 70% rename from easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb rename to easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb index 7db49d1db5..47751ee440 100644 --- a/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'RPackage' name = 'Seurat' -version = '1.4.0' +version = '1.4.0.16' versionsuffix = '-R-%(rver)s' homepage = 'http://satijalab.org/seurat' @@ -9,8 +9,11 @@ description = "Seurat is an R package designed for QC, analysis, and exploration toolchain = {'name': 'intel', 'version': '2017a'} -source_urls = ['https://github.com/satijalab/seurat/releases/download/v%(version_major_minor)s.0/'] -sources = ['%(name)s_%(version)s.tgz'] +source_urls = ['https://github.com/satijalab/seurat/archive/'] +sources = [{ + 'filename': SOURCE_TAR_GZ, + 'download_filename': '3bd092a.tar.gz', +}] dependencies = [('R', '3.4.0', '-X11-20170314')] -- GitLab From 3ccc82892883980470a421457ecc24b1baa85773 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Thu, 13 Jul 2017 18:12:18 +0800 Subject: [PATCH 150/845] adding easyconfigs: Siesta-4.0.1-intel-2017a.eb, Siesta-4.1-b3-intel-2017a.eb --- .../s/Siesta/Siesta-4.0.1-intel-2017a.eb | 17 +++++++++++++++++ .../s/Siesta/Siesta-4.1-b3-intel-2017a.eb | 18 ++++++++++++++++++ 2 files changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb create mode 100644 easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb diff --git a/easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb b/easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb new file mode 100644 index 0000000000..a7acc195e9 --- /dev/null +++ b/easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb @@ -0,0 +1,17 @@ +name = 'Siesta' +version = '4.0.1' + +homepage = 'http://departments.icmab.es/leem/siesta' +description = """SIESTA is both a method and its computer program implementation, to perform efficient electronic + structure calculations and ab initio molecular dynamics simulations of molecules and solids.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://launchpad.net/siesta/%(version_major_minor)s/%(version)s/+download'] +checksums = ['bfb9e4335ae1d1639a749ce7e679e739fdead5ee5766b5356ea1d259a6b1e6d1'] + +dependencies = [('netCDF-Fortran', '4.4.4')] + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb b/easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb new file mode 100644 index 0000000000..44fa8757f7 --- /dev/null +++ b/easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb @@ -0,0 +1,18 @@ +name = 'Siesta' +version = '4.1-b3' + +homepage = 'http://departments.icmab.es/leem/siesta' +description = """SIESTA is both a method and its computer program implementation, to perform efficient electronic + structure calculations and ab initio molecular dynamics simulations of molecules and solids.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +vl = version.split('-') +source_urls = ['https://launchpad.net/siesta/%s/%%(version)s/+download' % vl[0]] +checksums = ['f51970f34ee9b6b9de7fb77f722dde4e10817bafe7315716502eaa22bb96a090'] + +dependencies = [('netCDF-Fortran', '4.4.4')] + +moduleclass = 'phys' -- GitLab From 7b16d355b6c4d0a420f1c6f659a5d766888ce7b8 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 10:01:06 -0500 Subject: [PATCH 151/845] cope with GitHubs weird download URLs --- .../easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb index 915de6c6ce..0995bc4f02 100644 --- a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb @@ -14,9 +14,8 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} -# https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz source_urls = ['https://github.com/beltoforion/muparser/archive/'] -sources = [SOURCELOWER_TAR_GZ] +sources = ['v%(version)s.tar.gz'] checksums = ['0666ef55da72c3e356ca85b6a0084d56b05dd740c3c21d26d372085aa2c6e708'] builddependencies = [ -- GitLab From d305a60010159db45b8453342954513b23bbcf76 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 10:17:28 -0500 Subject: [PATCH 152/845] toolchain before sources --- .../libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb index 64f2cd1602..60da643bb8 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb @@ -11,13 +11,13 @@ description = """ threading support, and extensibility. """ +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] checksums = ['50d5686b79019ccea08bcbd7b02fe5a40634abcfd4146b6e75c6420cc170e9d9'] -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - builddependencies = [ ('binutils', '2.28'), ] -- GitLab From 0fd588c772be9a3d3a4093b2e195e5c1365b7682 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 10:32:48 -0500 Subject: [PATCH 153/845] readd OpenSSH comments --- easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb index 84630972bf..80d38b2735 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb @@ -24,6 +24,9 @@ builddependencies = [ dependencies = [ ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), ] osdependencies = [ -- GitLab From 63df373aa095c2327818f5935e59a34967344581 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 10:34:13 -0500 Subject: [PATCH 154/845] readd OpenSSH comments --- easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb index cc57b35bc9..7b0a7c7ffb 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb @@ -29,10 +29,14 @@ builddependencies = [ ] dependencies = [ + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.1.0e') ('zlib', '1.2.11'), ] configopts = '--with-zlib' +#configopts += '--with-ssl=$EBROOTOPENSSL' modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} -- GitLab From 24e782112dbf9a8ccc746b8e7df034916fcc4913 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 10:45:05 -0500 Subject: [PATCH 155/845] cleanups --- .../n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb index a9b3d371a0..51e898837e 100644 --- a/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb @@ -17,7 +17,7 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = ['https://github.com/vapier/ncompress/archive/'] -sources = ['%(name)s-%(version)s.tar.gz'] +sources = ['v%(version)s.tar.gz'] checksums = ['2670439935e7639c3a767087da99810e45bc3997d0638b3094396043571e5aec'] builddependencies = [ @@ -26,11 +26,10 @@ builddependencies = [ skipsteps = ['configure'] -installopts = """\ - DESTDIR=%(installdir)s\ - BINDIR=/bin\ - MANDIR=/man/man1\ -""" +installopts = '' +installopts += 'DESTDIR=%(installdir)s ' +installopts += 'BINDIR=/bin ' +installopts += 'MANDIR=/man/man1 ' sanity_check_paths = { 'files': ['bin/compress', 'man/man1/compress.1'], -- GitLab From c2a87864118cbb19386b9d174dd083c964454143 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 11:24:40 -0500 Subject: [PATCH 156/845] adding easyconfigs: Automake-1.15.1-GCCcore-6.4.0.eb --- .../Automake/Automake-1.15.1-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8aa27a8cf4 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15.1" + +homepage = 'http://www.gnu.org/software/automake/automake.html' + +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['988e32527abe052307d21c8ca000aa238b914df363a617e38f4fb89f5abf6260'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('Autoconf', '2.69'), +] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' -- GitLab From c2597c8882c5c2d8b17128d2ad42902cdc80a06f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 11:36:40 -0500 Subject: [PATCH 157/845] missed a pep8 warning --- .../easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb index 0995bc4f02..d54dab67db 100644 --- a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb @@ -25,7 +25,7 @@ builddependencies = [ configopts = "--disable-samples --enable-shared" sanity_check_paths = { - 'files': ['include/muParser.h', 'lib/libmuparser.%s' %SHLIB_EXT], + 'files': ['include/muParser.h', 'lib/libmuparser.%s' % SHLIB_EXT], 'dirs': [], } -- GitLab From 149c41a2088b8cbabb7216b37139af6ab294ff77 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 11:46:27 -0500 Subject: [PATCH 158/845] style fixes --- easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb index 7b0a7c7ffb..852ba24f5c 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb @@ -31,12 +31,12 @@ builddependencies = [ dependencies = [ # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.1.0e') + # ('OpenSSL', '1.1.0e') ('zlib', '1.2.11'), ] configopts = '--with-zlib' -#configopts += '--with-ssl=$EBROOTOPENSSL' +# configopts += '--with-ssl=$EBROOTOPENSSL' modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} -- GitLab From af138eeb23b861ab94d4a65af1f44332d7f1ff5a Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 12:05:25 -0500 Subject: [PATCH 159/845] depends on PR #4859 and #4890 --- .../Automake/Automake-1.15.1-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ .../Autotools-20170619-GCCcore-6.4.0.eb | 24 +++++++++++ .../l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb | 27 ++++++++++++ 3 files changed, 92 insertions(+) create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8aa27a8cf4 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15.1" + +homepage = 'http://www.gnu.org/software/automake/automake.html' + +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['988e32527abe052307d21c8ca000aa238b914df363a617e38f4fb89f5abf6260'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('Autoconf', '2.69'), +] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..34009edd83 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20170619' # date of the most recent change + +homepage = 'http://autotools.io' + +description = """ + This bundle collect the standard GNU build tools: Autoconf, Automake + and libtool +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15.1'), # 20170619 + ('libtool', '2.4.6'), # 20150215 +] + +# Pure bundle -- no need to specify 'binutils' used when building GCCcore +# toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..bc5c6cb40c --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' + +description = """ + GNU libtool is a generic library support script. Libtool hides the complexity + of using shared libraries behind a consistent, portable interface. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lib' -- GitLab From b1da9f1a5aac34c92ebdb9abeb6f4a5f962d9c7b Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 12:15:39 -0500 Subject: [PATCH 160/845] adding easyconfigs: FreeXL-1.0.2-GCCcore-6.4.0.eb --- .../f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..a4542ae867 --- /dev/null +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'FreeXL' +version = '1.0.2' + +homepage = 'https://www.gaia-gis.it/fossil/freexl/index' + +description = """ + FreeXL is an open source library to extract valid data from within an + Excel (.xls) spreadsheet. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +sanity_check_paths = { + 'files': ['lib/libfreexl.a'], + 'dirs': [] + } + +moduleclass = 'lib' -- GitLab From 007bf7400d443aafe5d4c469f41b9481f58ef7ca Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 12:21:16 -0500 Subject: [PATCH 161/845] add checksum --- easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb index a4542ae867..cdc2b4f4bc 100644 --- a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb @@ -15,6 +15,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['b39a4814a0f53f5e09a9192c41e3e51bd658843f770399023a963eb064f6409d'] builddependencies = [ ('binutils', '2.28'), -- GitLab From 1fe36def8814cc53df44843e98282de9d2bf6981 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 12:33:28 -0500 Subject: [PATCH 162/845] adding easyconfigs: PCRE-8.41-GCCcore-6.4.0.eb --- .../p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..0beae5c4cc --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.41' + +homepage = 'http://www.pcre.org/' + +description = """ + The PCRE library is a set of functions that implement regular expression + pattern matching using the same syntax and semantics as Perl 5. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['244838e1f1d14f7e2fa7681b857b3a8566b74215f28133f14a8f5e59241b682c'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = """\ + --enable-utf\ + --enable-unicode-properties\ + --enable-pcre16\ + --enable-pcre32\ +""" + +moduleclass = 'devel' -- GitLab From 3cbe316f1efe5a3e7d4e77d5a7993c5e8d47c713 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 12:58:00 -0500 Subject: [PATCH 163/845] adding easyconfigs: fontconfig-2.12.1-GCCcore-6.4.0.eb --- .../fontconfig-2.12.1-GCCcore-6.4.0.eb | 31 +++++++++++++++ .../f/freetype/freetype-2.8-GCCcore-6.4.0.eb | 39 +++++++++++++++++++ 2 files changed, 70 insertions(+) create mode 100644 easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..985994992e --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'fontconfig' +version = '2.12.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' + +description = """ + Fontconfig is a library designed to provide system-wide font configuration, + customization and application access. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] +checksums = ['a9f42d03949f948a3a4f762287dbc16e53a927c91a07ee64207ebd90a9e5e292'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('expat', '2.2.1'), + ('freetype', '2.8'), +] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..683ea59e3d --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +name = 'freetype' +version = '2.8' + +homepage = 'http://freetype.org' + +description = """ + FreeType 2 is a software font engine that is designed to be small, efficient, + highly customizable, and portable while capable of producing high-quality + output (glyph images). It can be used in graphics libraries, display servers, + font conversion tools, text image generation tools, and many other products + as well. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['33a28fabac471891d0523033e99c0005b95e5618dc8ffa7fa47f9dadcacb1c9b'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libpng', '1.6.30'), + ('zlib', '1.2.11'), +] + +configopts = '--with-harfbuzz=no' + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', + 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' -- GitLab From b5771c2fc23bb69e43e097b0af1b387cdc3e3fc6 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 14:10:18 -0500 Subject: [PATCH 164/845] adding easyconfigs: HDF-4.2.13-GCCcore-6.4.0.eb --- .../h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb | 43 +++++++++++++++++++ .../libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb | 41 ++++++++++++++++++ .../s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb | 29 +++++++++++++ 3 files changed, 113 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f1b4395af4 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'HDF' +version = '4.2.13' + +homepage = 'http://www.hdfgroup.org/products/hdf4/' + +description = """ + HDF (also known as HDF4) is a library and multi-object file format for + storing and managing data between machines. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.hdfgroup.org/ftp/HDF/releases/HDF%(version)s/src/'] +checksums = ['be9813c1dc3712c2df977d4960e1f13f20f447dfa8c3ce53331d610c1f470483'] + +builddependencies = [ + ('binutils', '2.28'), + ('Bison', '3.0.4'), + ('flex', '2.6.4'), +] + +dependencies = [ + ('libjpeg-turbo', '1.5.2'), + ('Szip', '2.1.1'), + ('zlib', '1.2.11'), +] + +configopts = '' +configopts += '--with-szlib=$EBROOTSZIP ' +configopts += '--includedir=%(installdir)s/include/%(namelower)s ' + +modextrapaths = {'CPATH': 'include/hdf'} + +sanity_check_paths = { + 'files': ['lib/libdf.a', 'lib/libhdf4.settings', 'lib/libmfhdf.a'], + 'dirs': ['bin', 'include/hdf'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8d3ce16df6 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.2' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' + +description = """ + libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to + accelerate baseline JPEG compression and decompression. libjpeg is a library + that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['9098943b270388727ae61de82adec73cf9f0dbb240b3bc8b172595ebf405b528'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('NASM', '2.13.01'), +] + +configopts = "--with-jpeg8" + +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', + 'bin/tjbench', 'bin/wrjpgcom', 'lib/libjpeg.a', + 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', + 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..98b8e0cf48 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' + +description = """ + Szip compression software, providing lossless compression of scientific data +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['897dda94e1d4bf88c91adeaad88c07b468b18eaf2d6125c47acac57e540904a9'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From e56d0c1885a545622e7aa95f33c3e4a6051d1eaf Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 14:35:09 -0500 Subject: [PATCH 165/845] indentation fix --- easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb index cdc2b4f4bc..f0015556cc 100644 --- a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb @@ -25,6 +25,6 @@ builddependencies = [ sanity_check_paths = { 'files': ['lib/libfreexl.a'], 'dirs': [] - } +} moduleclass = 'lib' -- GitLab From 056a9a561de34df0584dde15a2eb1436e68fe77e Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 14:39:00 -0500 Subject: [PATCH 166/845] adding easyconfigs: GMP-6.1.2-GCCcore-6.4.0.eb --- .../g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..579e3410d3 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.2' + +homepage = 'http://gmplib.org/' + +description = """ + GMP is a free library for arbitrary precision arithmetic, operating on signed + integers, rational numbers, and floating point numbers. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] +checksums = ['5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From c8f0fbf6ebc21b3cbc4d024516e1aa8f50585e99 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 15:18:26 -0500 Subject: [PATCH 167/845] adding easyconfigs: JasPer-2.0.12-GCCcore-6.4.0.eb --- .../j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..b2d812f323 --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'CMakeMake' + +name = 'JasPer' +version = '2.0.12' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' + +description = """ + The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in + the JPEG-2000 Part-1 standard. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['5b24faf5ed38670d6286e45ab7516b26458d05e7929b435afe569176765f4dda'] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +separate_build_dir = True + +configopts = '-DJAS_ENABLE_DOC=OFF ' + +sanity_check_paths = { + 'files': ['bin/jasper', 'lib64/libjasper.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'vis' -- GitLab From c46a9ba250b09cd33a2cd137c667d0a6d398ed99 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 13 Jul 2017 15:48:08 -0500 Subject: [PATCH 168/845] adding easyconfigs: Voro++-0.4.6-GCCcore-6.4.0.eb --- .../v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9d8d8d4d19 --- /dev/null +++ b/easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'Voro++' +version = '0.4.6' + +homepage = 'http://math.lbl.gov/voro++/' + +description = """ + Voro++ is a software library for carrying out three-dimensional computations + of the Voronoi tessellation. A distinguishing feature of the Voro++ library is + that it carries out cell-based calculations, computing the Voronoi cell for + each particle individually. It is particularly well-suited for applications + that rely on cell-based statistics, where features of Voronoi cells (eg. + volume, centroid, number of faces) can be used to analyze a system of + particles. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://math.lbl.gov/voro++/download/dir/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ef7970071ee2ce3800daa8723649ca069dc4c71cc25f0f7d22552387f3ea437e'] + +builddependencies = [ + ('binutils', '2.28'), +] + +# No configure +skipsteps = ['configure'] + +# Override CXX and CFLAGS variables from Makefile +buildopts = 'CXX="$CXX" CFLAGS="$CXXFLAGS"' + +# Override PREFIX variable from Makefile +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ['bin/voro++', 'lib/libvoro++.a', 'include/voro++/voro++.hh'], + 'dirs': [], +} + +modextrapaths = {'CPATH': 'include/voro++'} + +moduleclass = 'math' -- GitLab From ed582f7e7b5e3294f76d9656704b99740ec65c12 Mon Sep 17 00:00:00 2001 From: Davide Vanzo Date: Fri, 14 Jul 2017 14:31:09 -0500 Subject: [PATCH 169/845] Adding required zlib dependency --- .../u/util-linux/util-linux-2.29.2-intel-2017a.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb index 3495ebee0c..b794436556 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb @@ -23,7 +23,10 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [('ncurses', '6.0')] +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], -- GitLab From 459ecc488f3c15192c74f6b7d73f58f74810d485 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Mon, 17 Jul 2017 07:38:34 +0200 Subject: [PATCH 170/845] Add BLAST+ 2.6.0 for foss-2016b --- .../BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..ecc6133475 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,41 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = '2.6.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'cstd': 'c++14'} + +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] +patches = ['BLAST+-%(version)s_fix-make-install.patch'] + +dependencies = [ + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('PCRE', '8.39'), + ('Python', '2.7.12'), + ('Boost', '1.63.0', versionsuffix), + ('GMP', '6.1.1'), + ('libpng', '1.6.26'), + ('libjpeg-turbo', '1.5.0'), +] + +configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 --with-pcre=$EBROOTPCRE " +configopts += "--with-python=$EBROOTPYTHON --with-boost=$EBROOTBOOST --with-gmp=$EBROOTGMP " +configopts += "--with-png=$EBROOTLIBPNG --with-jpeg=$EBROOTLIBJPEGMINTURBO " + +sanity_check_paths = { + 'files': ['bin/blastn', 'bin/blastp', 'bin/blastx'], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 6c0b5310022d0c040ebd19c85c62e81bbc81bc98 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Mon, 17 Jul 2017 07:44:18 +0200 Subject: [PATCH 171/845] Add bcl2fastq2 2.19.1 for foss-2016b --- ...2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..bbe3f9e5a8 --- /dev/null +++ b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'bcl2fastq2' +version = '2.19.1' +versionsuffix = '-Python-2.7.12' + +homepage = 'https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html' +description = """bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by + Illumina sequencing systems to standard FASTQ file formats for downstream analysis.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/'] +sources = [{ + 'filename': '%(name)s-v%(version)s-tar.zip', + 'extract_cmd': 'unzip -p %s | tar -xzvf -', # source file is a .zip that contains a .tar.gz +}] + +checksums = ['cf13580f2c1ebcc3642b4d98a02ad01e41a44e644db7d31730f9767b25521806'] + +start_dir = 'src' +configopts = '--force-builddir' + +dependencies = [ + ('Boost', '1.54.0', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/%(name)s'], + 'dirs': ['lib'] +} + +moduleclass = 'bio' -- GitLab From 90fa9bb8a1ae4cb00351d23451286a9c60c76a58 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Mon, 17 Jul 2017 08:51:43 +0200 Subject: [PATCH 172/845] Add requested changes Use pyver variable and explicitly add Python as dependency. Use two spaces for inline comment. --- .../bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb index bbe3f9e5a8..9f550972a5 100644 --- a/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb @@ -4,7 +4,7 @@ easyblock = 'ConfigureMake' name = 'bcl2fastq2' version = '2.19.1' -versionsuffix = '-Python-2.7.12' +versionsuffix = '-Python-%(pyver)s' homepage = 'https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html' description = """bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by @@ -15,7 +15,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/'] sources = [{ 'filename': '%(name)s-v%(version)s-tar.zip', - 'extract_cmd': 'unzip -p %s | tar -xzvf -', # source file is a .zip that contains a .tar.gz + 'extract_cmd': 'unzip -p %s | tar -xzvf -', # source file is a .zip that contains a .tar.gz }] checksums = ['cf13580f2c1ebcc3642b4d98a02ad01e41a44e644db7d31730f9767b25521806'] @@ -25,6 +25,7 @@ configopts = '--force-builddir' dependencies = [ ('Boost', '1.54.0', versionsuffix), + ('Python', '2.7.12'), ] sanity_check_paths = { -- GitLab From e3002d7b5e25ff400c668cef51a14803365c1aba Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Mon, 17 Jul 2017 08:54:21 +0200 Subject: [PATCH 173/845] Fix sanity check Executable name is bcl2fastq not bcl2fastq2. --- .../b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb index 9f550972a5..eb24e2f5ed 100644 --- a/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/%(name)s'], + 'files': ['bin/bcl2fastq'], 'dirs': ['lib'] } -- GitLab From be75232725b621228d075facb0d644180985e9c7 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 17 Jul 2017 10:48:27 +0200 Subject: [PATCH 174/845] fix typo. Use modextrapaths instead of modextravars --- .../o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb index 547084c491..1644d773d3 100644 --- a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb @@ -45,7 +45,7 @@ modextrapaths = { 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', } -modextravars = { +modextrapaths = { 'OPENMM_INCLUDE_PATH': 'include', 'OPENMM_LIB_PATH': 'lib', } -- GitLab From affa6cb03c5917cbbdb701abb25e8200f8d53791 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 17 Jul 2017 11:01:26 +0200 Subject: [PATCH 175/845] put all modextrapaths together --- .../o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb | 3 --- 1 file changed, 3 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb index 1644d773d3..c0eaaaab71 100644 --- a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb @@ -43,9 +43,6 @@ sanity_check_paths = { modextrapaths = { 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', -} - -modextrapaths = { 'OPENMM_INCLUDE_PATH': 'include', 'OPENMM_LIB_PATH': 'lib', } -- GitLab From dcfcb3c73374b0d7ae67af20e58bc1f9bf12c383 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Tue, 18 Jul 2017 07:10:57 +0200 Subject: [PATCH 176/845] Add SHA256 checksum --- .../b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb index ecc6133475..0942e32de1 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb @@ -16,6 +16,9 @@ toolchainopts = {'cstd': 'c++14'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +checksums = ['0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996'] + patches = ['BLAST+-%(version)s_fix-make-install.patch'] dependencies = [ -- GitLab From 16e89fc20d32bb91ea24b217d6866b173bbed635 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Tue, 18 Jul 2017 10:01:56 +0200 Subject: [PATCH 177/845] Add Bowtie2 2.3.2 for foss-2016b --- .../b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb new file mode 100644 index 0000000000..5f6d0b56d6 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb @@ -0,0 +1,26 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'Bowtie2' +version = '2.3.2' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] + +dependencies = [('tbb', '2017_U5')] + +# to add script folder to path just uncomment this line +# modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' -- GitLab From 2afd8b882e9dd970968cb241ee1901a69606a5ed Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Tue, 18 Jul 2017 09:59:43 +0200 Subject: [PATCH 178/845] Add Bowtie 1.2.1.1 for foss-2016b --- .../b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb new file mode 100644 index 0000000000..8e5cbc7d40 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb @@ -0,0 +1,20 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'Bowtie' +version = '1.2.1.1' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. + It aligns short DNA sequences (reads) to the human genome.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +checksums = ['71d708c957380e115ba420a96ac5f8456c6a61760a5f4dbe06305df6a42131d8'] + +dependencies = [('tbb', '2017_U5')] + +moduleclass = 'bio' -- GitLab From f6306c149824717463c6a05f9a769177a3903d6e Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 18 Jul 2017 07:00:21 -0500 Subject: [PATCH 179/845] maintain sanity --- .../easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb index bc5c6cb40c..93cdcb700f 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb @@ -24,4 +24,9 @@ dependencies = [ ('M4', '1.4.18'), ] +sanity_check_paths = { + 'files': ['bin/libtool', 'bin/libtoolize', 'lib/libltdl.%s' % SHLIB_EXT], + 'dirs': ['include/libltdl', 'share/libtool/loaders', 'share/man/man1'], +} + moduleclass = 'lib' -- GitLab From 2d46898043deb387804b017ddf809f38df0d20f4 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 18 Jul 2017 07:23:07 -0500 Subject: [PATCH 180/845] maintain sanity --- easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb index 0beae5c4cc..197001b9a8 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb @@ -33,4 +33,10 @@ configopts = """\ --enable-pcre32\ """ +sanity_check_paths = { + 'files': ['bin/pcre-config', 'include/pcre.h', + 'share/man/man3/pcre.3', 'lib/libpcre32.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig', 'share/doc/pcre/html', 'share/man/man1'], +} + moduleclass = 'devel' -- GitLab From 2016d8b4c31d9beffacbc0338bab36c2a0d07247 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 18 Jul 2017 07:48:25 -0500 Subject: [PATCH 181/845] adding easyconfigs: Tcl-8.6.6-GCCcore-6.4.0.eb --- .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..a74036c985 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.6' + +homepage = 'http://www.tcl.tk/' + +description = """ + Tcl (Tool Command Language) is a very powerful but easy to learn dynamic + programming language, suitable for a very wide range of uses, including web + and desktop applications, networking, administration, testing and many more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] +checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' -- GitLab From 49ec59c6839c6b5e17b1a31856634f8e411de2d0 Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 18 Jul 2017 15:14:51 +0200 Subject: [PATCH 182/845] Add two more Python modules required by tensorboard. --- .../Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb index 5c08028478..29c05f3cea 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb @@ -28,6 +28,12 @@ exts_list = [ ('Werkzeug', '0.12.2', { 'source_urls': ['https://pypi.python.org/packages/source/w/Werkzeug'], }), + ('bleach', '2.0.0' ,{ + 'source_urls': ['https://pypi.python.org/packages/source/b/bleach'], + }), + ('Markdown', '2.6.8' ,{ + 'source_urls': ['https://pypi.python.org/packages/source/m/Markdown'], + }), ('tensorflow', version, { 'source_urls': ['https://pypi.python.org/packages/source/t/tensorflow'], 'source_tmpl': 'tensorflow-%%(version)s-cp%(pyshortver)s-cp%(pyshortver)sm-manylinux1_x86_64.whl' % -- GitLab From 3f5d04c3277eb1d798763bd5dc8e8b6ec47d267b Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 18 Jul 2017 16:13:41 +0200 Subject: [PATCH 183/845] Fix a whitespace error. Sorry! --- .../t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb index 29c05f3cea..4a3961b38c 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb @@ -28,10 +28,10 @@ exts_list = [ ('Werkzeug', '0.12.2', { 'source_urls': ['https://pypi.python.org/packages/source/w/Werkzeug'], }), - ('bleach', '2.0.0' ,{ + ('bleach', '2.0.0', { 'source_urls': ['https://pypi.python.org/packages/source/b/bleach'], }), - ('Markdown', '2.6.8' ,{ + ('Markdown', '2.6.8', { 'source_urls': ['https://pypi.python.org/packages/source/m/Markdown'], }), ('tensorflow', version, { -- GitLab From e630f55224a1938297732855ec50eba38c517c96 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 19 Jul 2017 07:37:49 +0200 Subject: [PATCH 184/845] Add sanity check --- .../easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb index 8e5cbc7d40..ceafd39df5 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb @@ -17,4 +17,11 @@ checksums = ['71d708c957380e115ba420a96ac5f8456c6a61760a5f4dbe06305df6a42131d8'] dependencies = [('tbb', '2017_U5')] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bowtie', 'bowtie-align-l', 'bowtie-align-s', 'bowtie-build', 'bowtie-build-l', 'bowtie-build-s', 'bowtie-inspect', 'bowtie-inspect-l', 'bowtie-inspect-s']], + 'dirs': [] +} + +sanity_check_commands = [('bowtie', '--version')] + moduleclass = 'bio' -- GitLab From 9693231280b707f8da0792c9912aef823f772f6e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 19 Jul 2017 07:39:12 +0200 Subject: [PATCH 185/845] Add sanity check --- .../easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb index 5f6d0b56d6..2258f2b213 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb @@ -20,6 +20,13 @@ checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] dependencies = [('tbb', '2017_U5')] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bowtie2', 'bowtie2-align-l', 'bowtie2-align-s', 'bowtie2-build', 'bowtie2-build-l', 'bowtie2-build-s', 'bowtie2-inspect', 'bowtie2-inspect-l', 'bowtie2-inspect-s']], + 'dirs': [] +} + +sanity_check_commands = [('bowtie2', '--version')] + # to add script folder to path just uncomment this line # modextrapaths = {'PATH': 'scripts'} -- GitLab From 2ea485b45b24e27d4e9ae8ce5f76085d01dafbed Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 19 Jul 2017 08:05:32 +0200 Subject: [PATCH 186/845] Fix line length --- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb index 2258f2b213..03a5dea73d 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb @@ -21,7 +21,9 @@ checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] dependencies = [('tbb', '2017_U5')] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bowtie2', 'bowtie2-align-l', 'bowtie2-align-s', 'bowtie2-build', 'bowtie2-build-l', 'bowtie2-build-s', 'bowtie2-inspect', 'bowtie2-inspect-l', 'bowtie2-inspect-s']], + 'files': ['bin/%s' % x for x in ['bowtie2', 'bowtie2-align-l', 'bowtie2-align-s', 'bowtie2-build', + 'bowtie2-build-l', 'bowtie2-build-s', 'bowtie2-inspect', 'bowtie2-inspect-l', + 'bowtie2-inspect-s']], 'dirs': [] } -- GitLab From 700d746e651ab98fed83705df9c1c5904977241d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 19 Jul 2017 08:07:20 +0200 Subject: [PATCH 187/845] Fix line length --- easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb index ceafd39df5..28f4c0d027 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb @@ -18,7 +18,8 @@ checksums = ['71d708c957380e115ba420a96ac5f8456c6a61760a5f4dbe06305df6a42131d8'] dependencies = [('tbb', '2017_U5')] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bowtie', 'bowtie-align-l', 'bowtie-align-s', 'bowtie-build', 'bowtie-build-l', 'bowtie-build-s', 'bowtie-inspect', 'bowtie-inspect-l', 'bowtie-inspect-s']], + 'files': ['bin/%s' % x for x in ['bowtie', 'bowtie-align-l', 'bowtie-align-s', 'bowtie-build', 'bowtie-build-l', + 'bowtie-build-s', 'bowtie-inspect', 'bowtie-inspect-l', 'bowtie-inspect-s']], 'dirs': [] } -- GitLab From 1c3daacb0de6ba160c554a291522809a40740742 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 19 Jul 2017 08:39:50 -0500 Subject: [PATCH 188/845] maintain sanity --- easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb index a74036c985..cffeed4270 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -31,4 +31,12 @@ runtest = 'test' start_dir = 'unix' +sanity_check_paths = { + 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', + 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, + 'lib/tclConfig.sh', 'man/man1/tclsh.1'], + 'dirs': ['share'], +} + + moduleclass = 'lang' -- GitLab From e77ec006d9dba2842069315d0bdc557e5650aca9 Mon Sep 17 00:00:00 2001 From: Oliver Stueker Date: Wed, 19 Jul 2017 16:37:36 -0230 Subject: [PATCH 189/845] GAMESS-US Apr 20 2017 R1 configs, patches --- .../GAMESS-US-20170420-R1-foss-2016b.eb | 39 ++++++++++++++ ...MESS-US-20170420-R1-intel-2016b-sockets.eb | 39 ++++++++++++++ .../GAMESS-US-20170420-R1-intel-2016b.eb | 38 ++++++++++++++ .../GAMESS-US-20170420-R1_recent-gcc.patch | 52 +++++++++++++++++++ ...20-R1_rungms_fix_PPN_not_initialized.patch | 10 ++++ 5 files changed, 178 insertions(+) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb new file mode 100644 index 0000000000..a18cd469bd --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2017 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# +# Authors:: +# * Kenneth Hoste +# * Ward Poelmans +# * Oliver Stueker +# License:: MIT/GPL +## +name = 'GAMESS-US' +version = '20170420-R1' + +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version +sources = ['gamess-%(version)s.tar.gz'] +checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] + +patches = [ + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', + 'GAMESS-US-20170420-R1_recent-gcc.patch', +] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb new file mode 100644 index 0000000000..d2d82e8fab --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2017 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# +# Authors:: +# * Kenneth Hoste +# * Ward Poelmans +# * Oliver Stueker +# License:: MIT/GPL +## +name = 'GAMESS-US' +version = '20170420-R1' + +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ + +toolchain = {'name': 'intel', 'version': '2016b'} +toolchainopts = {'usempi': False} +ddi_comm = 'sockets' + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version +sources = ['gamess-%(version)s.tar.gz'] +checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] + +patches = [ + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', +] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb new file mode 100644 index 0000000000..7a10fdb215 --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2017 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# +# Authors:: +# * Kenneth Hoste +# * Ward Poelmans +# * Oliver Stueker +# License:: MIT/GPL +## +name = 'GAMESS-US' +version = '20170420-R1' + +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ + +toolchain = {'name': 'intel', 'version': '2016b'} +toolchainopts = {'usempi': True} + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version +sources = ['gamess-%(version)s.tar.gz'] +checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] + +patches = [ + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', +] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch new file mode 100644 index 0000000000..3287498882 --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch @@ -0,0 +1,52 @@ +--- config.orig 2017-07-18 19:34:32.056678893 +0000 ++++ config 2017-07-18 19:48:37.701737302 +0000 +@@ -410,6 +410,7 @@ + case 5.1: + case 5.2: + case 5.3: ++ case 5.4: + echo " Good, the newest gfortrans can compile REAL*16 data type." + breaksw + default: +@@ -810,6 +811,7 @@ + case 5.1: + case 5.2: + case 5.3: ++ case 5.4: + echo " Good, the newest gfortrans can compile REAL*16 data type." + breaksw + default: +--- comp.orig 2017-07-19 11:55:05.490262037 +0000 ++++ comp 2017-07-19 11:52:47.986565565 +0000 +@@ -1593,6 +1593,7 @@ + case 5.1: + case 5.2: + case 5.3: ++ case 5.4: + if ($MODULE == cosmo) set OPT='-O0' + if ($MODULE == dcscf) set OPT='-O0' + if ($MODULE == tddgrd) set OPT='-O0' +@@ -1823,6 +1824,7 @@ + case 5.1: + case 5.2: + case 5.3: ++ case 5.4: + if ($MODULE == cosmo) set OPT='-O0' # same issue as seen in 4.6 + if ($MODULE == dcscf) set OPT='-O0' # exam44, continues from 4.7 + if ($MODULE == tddgrd) set OPT='-O0' # exam41, continues from 4.6 +@@ -2074,6 +2076,7 @@ + case 5.1: + case 5.2: + case 5.3: ++ case 5.4: + if ($MODULE == cosmo) set OPT='-O0' + if ($MODULE == dcscf) set OPT='-O0' + if ($MODULE == tddgrd) set OPT='-O0' +@@ -2191,6 +2194,7 @@ + case 5.1: + case 5.2: + case 5.3: ++ case 5.4: + if ($MODULE == cosmo) set OPT='-O0' + if ($MODULE == dcscf) set OPT='-O0' + if ($MODULE == tddgrd) set OPT='-O0' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch new file mode 100644 index 0000000000..0e6126bbf3 --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch @@ -0,0 +1,10 @@ +--- rungms.orig 2017-07-19 16:53:29.325530604 +0000 ++++ rungms 2017-07-19 16:55:39.627358245 +0000 +@@ -538,6 +538,7 @@ + # all nodes are presumed to have equal numbers of cores. + # + set PPN=$4 ++ if (null$PPN == null) set PPN=1 # make sure PPN is initialized + # + # Allow for compute process and data servers (one pair per core) + # note that NCPUS = #cores, and NPROCS = #MPI processes -- GitLab From 56179a8e735a06a8dc9af0d06d683a4ac8f971d8 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 19 Jul 2017 18:47:59 -0500 Subject: [PATCH 190/845] adding easyconfigs: SQLite-3.19.3-GCCcore-6.4.0.eb --- .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 +++++++++++++++++++ .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 ++++++++++++++++ 2 files changed, 91 insertions(+) create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9d9a1ef2eb --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the +# policy: http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.19.3' + +homepage = 'http://www.sqlite.org/' + +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz +source_urls = ['http://www.sqlite.org/2017/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % + int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] +checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libreadline', '7.0'), + ('Tcl', '8.6.6'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', + 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..cffeed4270 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.6' + +homepage = 'http://www.tcl.tk/' + +description = """ + Tcl (Tool Command Language) is a very powerful but easy to learn dynamic + programming language, suitable for a very wide range of uses, including web + and desktop applications, networking, administration, testing and many more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] +checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +sanity_check_paths = { + 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', + 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, + 'lib/tclConfig.sh', 'man/man1/tclsh.1'], + 'dirs': ['share'], +} + + +moduleclass = 'lang' -- GitLab From 34014ba01b2606d1dd77782c9f5d426cccfca08f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 19 Jul 2017 19:37:20 -0500 Subject: [PATCH 191/845] adding easyconfigs: PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb --- .../l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb | 34 ++++++++++++ ...L-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb | 38 +++++++++++++ .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 53 +++++++++++++++++++ .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 +++++++++++++++++ .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 +++++++++++++++ 5 files changed, 216 insertions(+) create mode 100644 easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..156fcf6ef5 --- /dev/null +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'ConfigureMake' + +name = 'libyaml' +version = '0.1.6' + +homepage = 'http://pyyaml.org/wiki/LibYAML' + +description = """LibYAML is a YAML parser and emitter written in C.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://pyyaml.org/download/libyaml/'] +sources = ['yaml-%(version)s.tar.gz'] +checksums = ['7da6971b4bd08a986dd2a61353bc422362bd0edcc67d7ebaac68c95f74182749'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], + 'dirs': ["lib/pkgconfig"] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000..eb4c534d26 --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,38 @@ +easyblock = 'PythonPackage' + +name = 'PyYAML' +version = '3.12' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'https://pypi.python.org/pypi/PyYAML/' + +description = """ + PyYAML is a YAML parser and emitter for the Python programming language. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab'] + +builddependencies = [ + ('binutils', '2.28'), + ('Python', pyver, pysubver), +] + +dependencies = [ + ('libyaml', '0.1.6'), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb new file mode 100644 index 0000000000..42f2730022 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb @@ -0,0 +1,53 @@ +name = 'Python' +version = '2.7.13' +versionsuffix = '-bare' + +homepage = 'http://python.org/' + +description = """ + Python is a programming language that lets you work more quickly and + integrate your systems more effectively. + +Note: This module is meant to provide a builddependency for other Python + modules while using EasyBuild's --minimaltoolchain option. Modules + built with it will require the full Python later +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.19.3'), + ('zlib', '1.2.11'), +] + +osdependencies = [ + # rely upon distribution for timely security updates + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +# We hide this by default since users should not use it in production, +# high-performance Python should be delivered at compiler level with +# a default extension set +#hidden = True + +# bare installation: only known module deps for GCCcore tools included +exts_list = [] + +# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... +# add RPATH so this can be as a builddependency later +prebuildopts = """ + sed -e 's:Modules/python.o \\\\:-Wl,-rpath=%(installdir)s/lib Modules/python.o \\\\:' -i.eb Makefile +""" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9d9a1ef2eb --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the +# policy: http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.19.3' + +homepage = 'http://www.sqlite.org/' + +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz +source_urls = ['http://www.sqlite.org/2017/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % + int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] +checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libreadline', '7.0'), + ('Tcl', '8.6.6'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', + 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..cffeed4270 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.6' + +homepage = 'http://www.tcl.tk/' + +description = """ + Tcl (Tool Command Language) is a very powerful but easy to learn dynamic + programming language, suitable for a very wide range of uses, including web + and desktop applications, networking, administration, testing and many more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] +checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +sanity_check_paths = { + 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', + 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, + 'lib/tclConfig.sh', 'man/man1/tclsh.1'], + 'dirs': ['share'], +} + + +moduleclass = 'lang' -- GitLab From afd8369b9930976bfe3178f5f15bfdfa64ab4bed Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 19 Jul 2017 19:54:41 -0500 Subject: [PATCH 192/845] adding easyconfigs: setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb --- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 53 +++++++++++++++++++ .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 +++++++++++++++++ ...36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb | 32 +++++++++++ .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 +++++++++++++++ 4 files changed, 176 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb new file mode 100644 index 0000000000..42f2730022 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb @@ -0,0 +1,53 @@ +name = 'Python' +version = '2.7.13' +versionsuffix = '-bare' + +homepage = 'http://python.org/' + +description = """ + Python is a programming language that lets you work more quickly and + integrate your systems more effectively. + +Note: This module is meant to provide a builddependency for other Python + modules while using EasyBuild's --minimaltoolchain option. Modules + built with it will require the full Python later +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.19.3'), + ('zlib', '1.2.11'), +] + +osdependencies = [ + # rely upon distribution for timely security updates + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +# We hide this by default since users should not use it in production, +# high-performance Python should be delivered at compiler level with +# a default extension set +#hidden = True + +# bare installation: only known module deps for GCCcore tools included +exts_list = [] + +# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... +# add RPATH so this can be as a builddependency later +prebuildopts = """ + sed -e 's:Modules/python.o \\\\:-Wl,-rpath=%(installdir)s/lib Modules/python.o \\\\:' -i.eb Makefile +""" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9d9a1ef2eb --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the +# policy: http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.19.3' + +homepage = 'http://www.sqlite.org/' + +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz +source_urls = ['http://www.sqlite.org/2017/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % + int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] +checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libreadline', '7.0'), + ('Tcl', '8.6.6'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', + 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000..6c0e83e5dc --- /dev/null +++ b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'setuptools' +version = '36.2.0' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'http://pypi.python.org/pypi/setuptools/' + +description = """ + Download, build, install, upgrade, and uninstall Python packages -- easily! +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] + +builddependencies = [ + ('Python', pyver, pysubver), +] + +pylibdir = "lib/python%s/site-packages/%s" % (pyshortver, name) +sanity_check_paths = { + 'files': ["bin/easy_install", "%s-%s-py%s.egg" % + (pylibdir, version, pyshortver)], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..cffeed4270 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.6' + +homepage = 'http://www.tcl.tk/' + +description = """ + Tcl (Tool Command Language) is a very powerful but easy to learn dynamic + programming language, suitable for a very wide range of uses, including web + and desktop applications, networking, administration, testing and many more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] +checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +sanity_check_paths = { + 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', + 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, + 'lib/tclConfig.sh', 'man/man1/tclsh.1'], + 'dirs': ['share'], +} + + +moduleclass = 'lang' -- GitLab From cc31c73e147ea9d13d35ab0af9080bae73301a33 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 19 Jul 2017 20:04:10 -0500 Subject: [PATCH 193/845] add checksum --- .../setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb index 6c0e83e5dc..9b5a4054e1 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -17,6 +17,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = [PYPI_SOURCE] sources = [SOURCE_ZIP] +checksums = ['4c2bda3829c9dbbe9c2b33d89c4b1cb6d45813615ab8e248ad352e3697a96d81'] builddependencies = [ ('Python', pyver, pysubver), -- GitLab From d8d78be361b0d88101593befe669901993a6c468 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 19 Jul 2017 20:20:27 -0500 Subject: [PATCH 194/845] adding easyconfigs: six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb --- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 53 +++++++++++++++++++ .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 +++++++++++++++++ ...1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb | 31 +++++++++++ .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 +++++++++++++++ 4 files changed, 175 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb new file mode 100644 index 0000000000..42f2730022 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb @@ -0,0 +1,53 @@ +name = 'Python' +version = '2.7.13' +versionsuffix = '-bare' + +homepage = 'http://python.org/' + +description = """ + Python is a programming language that lets you work more quickly and + integrate your systems more effectively. + +Note: This module is meant to provide a builddependency for other Python + modules while using EasyBuild's --minimaltoolchain option. Modules + built with it will require the full Python later +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.19.3'), + ('zlib', '1.2.11'), +] + +osdependencies = [ + # rely upon distribution for timely security updates + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +# We hide this by default since users should not use it in production, +# high-performance Python should be delivered at compiler level with +# a default extension set +#hidden = True + +# bare installation: only known module deps for GCCcore tools included +exts_list = [] + +# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... +# add RPATH so this can be as a builddependency later +prebuildopts = """ + sed -e 's:Modules/python.o \\\\:-Wl,-rpath=%(installdir)s/lib Modules/python.o \\\\:' -i.eb Makefile +""" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9d9a1ef2eb --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the +# policy: http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.19.3' + +homepage = 'http://www.sqlite.org/' + +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz +source_urls = ['http://www.sqlite.org/2017/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % + int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] +checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libreadline', '7.0'), + ('Tcl', '8.6.6'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', + 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000..f5345426c3 --- /dev/null +++ b/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,31 @@ +# Author:: Jack Perdue - TAMU HPRC - http://sc.tamu.edu + +easyblock = 'PythonPackage' + +name = 'six' +version = '1.10.0' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'https://pypi.python.org/pypi/six/1.10.0' + +description = "Python 2 and 3 compatibility utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_LOWER_SOURCE] +checksums = ['105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a'] + +builddependencies = [ + ('Python', pyver, pysubver), +] + +sanity_check_paths = { + 'files': ['lib/python%s/site-packages/%%(name)s.py' % pyshortver], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..cffeed4270 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.6' + +homepage = 'http://www.tcl.tk/' + +description = """ + Tcl (Tool Command Language) is a very powerful but easy to learn dynamic + programming language, suitable for a very wide range of uses, including web + and desktop applications, networking, administration, testing and many more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] +checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +sanity_check_paths = { + 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', + 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, + 'lib/tclConfig.sh', 'man/man1/tclsh.1'], + 'dirs': ['share'], +} + + +moduleclass = 'lang' -- GitLab From 189003600e9f8ae77a05fbb0c471d0178fce96a5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Thu, 20 Jul 2017 14:15:59 +0200 Subject: [PATCH 195/845] Add attributions --- .../easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb index 03a5dea73d..bea5f1dfd7 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb @@ -1,4 +1,13 @@ # This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute +# Modified by: Kurt Lust, UAntwerp +# Modified by: Paul Jähne name = 'Bowtie2' version = '2.3.2' -- GitLab From 8345476b3737f24120a99075def0b85bcbabc516 Mon Sep 17 00:00:00 2001 From: Oliver Stueker Date: Thu, 20 Jul 2017 11:13:07 -0230 Subject: [PATCH 196/845] GAMESS-US add versionsuffix to pass styletests --- .../g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb index d2d82e8fab..756354fcc7 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb @@ -12,6 +12,7 @@ ## name = 'GAMESS-US' version = '20170420-R1' +versionsuffix = '-sockets' homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) -- GitLab From 8399263869d34a464185fd3a09c183138f89204c Mon Sep 17 00:00:00 2001 From: Oliver Stueker Date: Thu, 20 Jul 2017 11:29:38 -0230 Subject: [PATCH 197/845] GAMESS-US minor style fixes --- .../g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb | 6 +++--- .../GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb | 4 ++-- .../g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb index a18cd469bd..3d445caa7f 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb @@ -26,9 +26,9 @@ sources = ['gamess-%(version)s.tar.gz'] checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] patches = [ - 'GAMESS-US_rungms-slurm.patch', - 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', - 'GAMESS-US-20170420-R1_recent-gcc.patch', + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', + 'GAMESS-US-20170420-R1_recent-gcc.patch', ] # increase these numbers if your system is bigger in terms of cores-per-node or number of nodes diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb index 756354fcc7..f227f1556e 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb @@ -28,8 +28,8 @@ sources = ['gamess-%(version)s.tar.gz'] checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] patches = [ - 'GAMESS-US_rungms-slurm.patch', - 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', ] # increase these numbers if your system is bigger in terms of cores-per-node or number of nodes diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb index 7a10fdb215..5a67a77274 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb @@ -26,8 +26,8 @@ sources = ['gamess-%(version)s.tar.gz'] checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] patches = [ - 'GAMESS-US_rungms-slurm.patch', - 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', ] # increase these numbers if your system is bigger in terms of cores-per-node or number of nodes -- GitLab From 94f225009eae9ac4471852c4e701ba93bb79b29e Mon Sep 17 00:00:00 2001 From: Pol Llovet Date: Thu, 20 Jul 2017 09:56:02 -0600 Subject: [PATCH 198/845] Updating deprecated PLINK urls --- easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb | 4 ++-- easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb | 4 ++-- easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb | 4 ++-- easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb | 4 ++-- easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb | 4 ++-- 5 files changed, 10 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb index 7d60edd787..f172624a26 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2015b'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] patches = ['PLINK-1.07_redeclaration.patch'] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb index 5b4efc33f6..08a47b6d0e 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] patches = ['PLINK-1.07_redeclaration.patch'] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb index 26b293a777..9782f91b1d 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['hhttp://zzz.bwh.harvard.edu/plink/dist/'] patches = ['PLINK-1.07_redeclaration.patch'] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb index 1c0a984949..5a77a49bf9 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb @@ -11,14 +11,14 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = "plink-1.07-src: Whole-genome association analysis toolset" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] dependencies = [('zlib', '1.2.7')] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb index c6adbf0428..8f4e1d77e1 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb @@ -8,7 +8,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -20,7 +20,7 @@ toolchain = {'name': 'ictce', 'version': '6.2.5'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] dependencies = [('zlib', '1.2.8')] -- GitLab From a94e3ea95cd8798022c02c3f88fea0ac74275d16 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 20 Jul 2017 15:30:42 -0500 Subject: [PATCH 199/845] style fix --- easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb index 9d9a1ef2eb..e10115f361 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb @@ -24,8 +24,7 @@ toolchainopts = {'pic': True} # eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz source_urls = ['http://www.sqlite.org/2017/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % - int(x) for x in version.split('.')[1:]) +version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) for x in version.split('.')[1:]) sources = ['sqlite-autoconf-%s.tar.gz' % version_str] checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] -- GitLab From fe6a3c30c2ce1d89566f02131620809e80725053 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 20 Jul 2017 16:34:22 -0500 Subject: [PATCH 200/845] Delete libsigsegv-2.11-GCC-6.4.0-2.28.eb going with GCCcore for now --- .../libsigsegv-2.11-GCC-6.4.0-2.28.eb | 24 ------------------- 1 file changed, 24 deletions(-) delete mode 100644 easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb deleted file mode 100644 index 716653df4c..0000000000 --- a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCC-6.4.0-2.28.eb +++ /dev/null @@ -1,24 +0,0 @@ -# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu - -easyblock = 'ConfigureMake' - -name = 'libsigsegv' -version = '2.11' - -homepage = 'https://www.gnu.org/software/libsigsegv/' - -description = """ - GNU libsigsegv is a library for handling page faults in user mode. -""" - -toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': ['include/sigsegv.h', 'lib/libsigsegv.a', 'lib/libsigsegv.la'], - 'dirs': [], -} - -moduleclass = 'lib' -- GitLab From 5005f6ce03899b84b16a7cb0cd5c945548162ac2 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 20 Jul 2017 16:51:50 -0500 Subject: [PATCH 201/845] cleanup and checksum --- .../l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb index 519b35b032..d65a11de5b 100644 --- a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb @@ -7,14 +7,14 @@ version = '2.11' homepage = 'https://www.gnu.org/software/libsigsegv/' -description = """ - GNU libsigsegv is a library for handling page faults in user mode. -""" +description = "GNU libsigsegv is a library for handling page faults in user mode." toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['dd7c2eb2ef6c47189406d562c1dc0f96f2fc808036834d596075d58377e37a18'] builddependencies = [ ('binutils', '2.28'), -- GitLab From 77fbf8e39cf718bd3a2a3612812a8e64c9784911 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 06:58:25 -0500 Subject: [PATCH 202/845] adding easyconfigs: BEDTools-2.26.0-GCCcore-6.4.0.eb --- .../BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..13cda05cc9 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +# Author: Maxime Schmitt, University of Luxembourg +# Author: Adam Huffman, The Francis Crick Institute +# +# Based on the work of: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.26.0' + +homepage = "https://github.com/arq5x/bedtools2" + +description = """ + The BEDTools utilities allow one to address common genomics tasks such as + finding feature overlaps and computing coverage. The utilities are largely + based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/arq5x/bedtools2/releases/download/v%(version)s/'] +sources = ['bedtools-%(version)s.tar.gz'] +checksums = ['65f32f32cbf1b91ba42854b40c604aa6a16c7d3b3ec110d6acf438eb22df0a4a'] + +builddependencies = [ + ('binutils', '2.28'), +] + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'dirs': files_to_copy, + 'files': ['bin/%s' % x for x in + ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], +} + +moduleclass = 'bio' -- GitLab From 2556099b3b4383a2b3a701191be143366e8b40c5 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 07:11:26 -0500 Subject: [PATCH 203/845] adding easyconfigs: Blitz++-0.10-GCCcore-6.4.0.eb --- .../b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..7789563ca5 --- /dev/null +++ b/easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'Blitz++' +version = '0.10' + +homepage = 'http://blitz.sourceforge.net/' + +description = """ + Blitz++ is a (LGPLv3+) licensed meta-template library for array manipulation + in C++ with a speed comparable to Fortran implementations, while preserving an + object-oriented interface +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [('https://sourceforge.net/projects/blitz/files/blitz/%(name)s %(version)s', 'download')] +sources = ['blitz-%(version)s.tar.gz'] +checksums = ['804ef0e6911d43642a2ea1894e47c6007e4c185c866a7d68bad1e4c8ac4e6f94'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ['lib/libblitz.a'], + 'dirs': ['include/blitz/array', 'include/blitz/gnu', 'include/blitz/meta', + 'include/random', 'lib/pkgconfig'], +} + +moduleclass = 'lib' -- GitLab From 73f4b1698f0ef494a8e7d4139408a42a4d9471eb Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 07:55:53 -0500 Subject: [PATCH 204/845] adding easyconfigs: CLISP-2.49-GCCcore-6.4.0.eb --- .../c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb | 51 +++++++++++++++++++ 1 file changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..d9d3d1bf33 --- /dev/null +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb @@ -0,0 +1,51 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'CLISP' +version = '2.49' + +homepage = 'http://www.clisp.org/' + +description = """ + Common Lisp is a high-level, general-purpose, object-oriented, dynamic, + functional programming language. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('DB', '6.2.32'), + ('libffcall', '1.13'), + ('libreadline', '7.0'), + ('libsigsegv', '2.11'), + ('PCRE', '8.41'), + ('zlib', '1.2.11'), +] + +prebuildopts = """ + sed -e 's/ac_cv_have_decl_rl_readline_state" = x""yes/ac_cv_have_decl_rl_readline_state" = x""JKP/'\ + -i.eb modules/readline/configure + cd src +""" + +preinstallopts = """ + cd src +""" + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/clisp', 'lib/%(namelower)s-%(version)s/base/lisp.a'], + 'dirs': ['share/aclocal', 'share/doc'], +} + +moduleclass = 'lang' -- GitLab From b59b726b6b27d71570aaecd9fe0acb822dbf219e Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 08:25:41 -0500 Subject: [PATCH 205/845] adding easyconfigs: DBus-1.10.20-GCCcore-6.4.0.eb --- .../d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..99bd5ca7ab --- /dev/null +++ b/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'DBus' +version = '1.10.20' + +homepage = 'http://dbus.freedesktop.org/' + +description = """ + D-Bus is a message bus system, a simple way for applications to talk + to one another. In addition to interprocess communication, D-Bus helps + coordinate process lifecycle; it makes it simple and reliable to code + a "single instance" application or daemon, and to launch applications + and daemons on demand when their services are needed. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://dbus.freedesktop.org/releases/dbus'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e574b9780b5425fde4d973bb596e7ea0f09e00fe2edd662da9016e976c460b48'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('expat', '2.2.1'), +] + +sanity_check_paths = { + 'files': ['bin/dbus-%s' % x for x in + ['cleanup-sockets', 'daemon', 'launch', 'monitor', + 'run-session', 'send', 'uuidgen']] + + ['lib/libdbus-1.%s' % x for x in ['a', SHLIB_EXT]], + 'dirs': ['include', 'share'], +} + +moduleclass = 'devel' -- GitLab From 3ee3c867b399e7ae583f18793ab106c792d2a449 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 08:36:06 -0500 Subject: [PATCH 206/845] adding easyconfigs: Eigen-3.3.4-GCCcore-6.4.0.eb --- .../e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..7fd77a3b5e --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +name = 'Eigen' +version = '3.3.4' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' + +description = """ + Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] +checksums = ['dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6'] + +# both in Eigen 2.x an 3.x +include_files = ['Cholesky', 'Core', 'Dense', 'Eigen', 'Geometry', 'LU', + 'QR', 'QtAlignedMalloc', 'SVD', 'Sparse', 'StdVector'] + +# only 3.x +include_files.extend(['CholmodSupport', 'Eigenvalues', 'Householder', + 'IterativeLinearSolvers', 'Jacobi', 'OrderingMethods', + 'PaStiXSupport', 'PardisoSupport', 'SparseCholesky', + 'SparseCore', 'StdDeque', 'StdList', + 'SuperLUSupport', 'UmfPackSupport']) + +sanity_check_paths = { + 'files': ['include/Eigen/%s' % x for x in include_files], + 'dirs': ['include'], +} + +moduleclass = 'math' -- GitLab From 8a4309a6151f85c12881d7649541e4b79a066066 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 08:49:32 -0500 Subject: [PATCH 207/845] adding easyconfigs: gperf-3.1-GCCcore-6.4.0.eb --- .../g/gperf/gperf-3.1-GCCcore-6.4.0.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..6dd680f7e4 --- /dev/null +++ b/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'gperf' +version = '3.1' + +homepage = 'http://www.gnu.org/software/gperf/' + +description = """ + GNU gperf is a perfect hash function generator. For a given list of strings, + it produces a hash function and hash table, in form of C or C++ code, for + looking up a value depending on the input string. The hash function is + perfect, which means that the hash table has no collisions, and the hash + table lookup needs a single string comparison only. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['588546b945bba4b70b6a3a616e80b4ab466e3f33024a352fc2198112cdbb3ae2'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/gperf'], + 'dirs': [] +} + +moduleclass = 'devel' -- GitLab From 7d8f23154e056e5585b1b43dd402b0d4fa9464b4 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 09:08:10 -0500 Subject: [PATCH 208/845] adding easyconfigs: libunistring-0.9.7-GCCcore-6.4.0.eb --- .../libunistring-0.9.7-GCCcore-6.4.0.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8d845c9877 --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.7' + +homepage = 'http://www.gnu.org/software/libunistring/' + +description = """ + This library provides functions for manipulating Unicode strings and for + manipulating C strings according to the Unicode standard. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] +checksums = ['2e3764512aaf2ce598af5a38818c0ea23dedf1ff5460070d1b6cee5c3336e797'] + +builddependencies = [ + ('binutils', '2.28'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], +} + +moduleclass = 'lib' -- GitLab From 5dc3a28322e7f90edfd1909590812913106be11b Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 09:35:18 -0500 Subject: [PATCH 209/845] adding easyconfigs: Guile-2.2.2-GCCcore-6.4.0.eb --- .../g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb | 43 +++++++++++++++++++ .../l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb | 34 +++++++++++++++ .../libunistring-0.9.7-GCCcore-6.4.0.eb | 33 ++++++++++++++ 3 files changed, 110 insertions(+) create mode 100644 easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..395d150d5b --- /dev/null +++ b/easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'Guile' +version = '2.2.2' + +homepage = 'https://www.gnu.org/software/guile/' + +description = """ + Guile is a programming language, designed to help programmers create flexible + applications that can be extended by users or other programmers with plug-ins, + modules, or scripts. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3d9b94183b19f04dd4317da87beedafd1c947142f3d861ca1f0224e7a75127ee'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), +] + +dependencies = [ + ('gc', '7.6.0'), + ('GMP', '6.1.2'), + ('libffi', '3.2.1'), + ('libunistring', '0.9.7'), +] + +sanity_check_paths = { + 'files': ['bin/guild', 'bin/guile', 'bin/guile-config', + 'bin/guile-snarf', 'bin/guile-tools', + 'include/guile/%(version_major_minor)s/libguile.h', + 'lib/libguile-%(version_major_minor)s.a', + 'lib/libguile-%%(version_major_minor)s.%s' % SHLIB_EXT], + 'dirs': ['include/guile/%(version_major_minor)s/libguile', + 'lib/guile/%(version_major_minor)s/ccache'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..35fa02052a --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.2.1' + +homepage = 'http://sourceware.org/libffi/' + +description = """ + The libffi library provides a portable, high level programming interface to + various calling conventions. This allows a programmer to call any function + specified by a call interface description at run-time. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), + ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': ['lib', 'lib64'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8d845c9877 --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.7' + +homepage = 'http://www.gnu.org/software/libunistring/' + +description = """ + This library provides functions for manipulating Unicode strings and for + manipulating C strings according to the Unicode standard. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] +checksums = ['2e3764512aaf2ce598af5a38818c0ea23dedf1ff5460070d1b6cee5c3336e797'] + +builddependencies = [ + ('binutils', '2.28'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], +} + +moduleclass = 'lib' -- GitLab From 6ad085d0cb5eb1dd485902f1e4f5f5cd54cf6412 Mon Sep 17 00:00:00 2001 From: jrbosch Date: Fri, 21 Jul 2017 11:26:56 -0400 Subject: [PATCH 210/845] add GROMACS easyconfig with GPU enabled and foss 2016b toolchain --- ...ACS-2016.3-foss-2016b-GPU-enabled-build.eb | 45 +++++++++++++++++++ ...ACS-2016.3_amend_search_for_nvml_lib.patch | 2 +- 2 files changed, 46 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb new file mode 100644 index 0000000000..7d8210d268 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# Authors:: +# * Wiktor Jurkowski +# * Fotis Georgatos +# * George Tsouloupas +# * Kenneth Hoste +# * Adam Huffman +# License:: MIT/GPL +## + +name = 'GROMACS' +version = '2016.3' +versionsuffix = '-GPU-enabled-build' + +homepage = 'http://www.gromacs.org' +description = """ +GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. + +This is a GPU enabled build, containing both MPI and threadMPI builds. +""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'GROMACS-%(version)s_amend_search_for_nvml_lib.patch', +] + +dependencies = [ + ('CUDA', '8.0.61_375.26'), +] + +builddependencies = [ + ('CMake', '3.7.2'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch index 8ae9027f34..b30455aecc 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch @@ -8,7 +8,7 @@ diff -ru gromacs-2016.orig/cmake/FindNVML.cmake gromacs-2016/cmake/FindNVML.cmak # passed to the installer, or the root where they later found the # kit to be installed. Below, we cater for both possibilities. - set( NVML_LIB_PATHS /usr/lib64 ) -+ set( NVML_LIB_PATHS /usr/lib64 /usr/lib/nvidia-367 /usr/lib/nvidia-375) ++ set( NVML_LIB_PATHS /usr/lib64 /usr/lib64/nvidia /usr/lib/nvidia-367 /usr/lib/nvidia-375) if(GPU_DEPLOYMENT_KIT_ROOT_DIR) list(APPEND NVML_LIB_PATHS "${GPU_DEPLOYMENT_KIT_ROOT_DIR}/src/gdk/nvml/lib" -- GitLab From d7d3f98ef76a5048ec1c04b5deecc17585f26b73 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 11:12:11 -0500 Subject: [PATCH 211/845] adding easyconfigs: pkg-config-0.29.2-GCCcore-6.4.0.eb --- .../pkg-config-0.29.2-GCCcore-6.4.0.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..c02bedf48d --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29.2' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' + +description = """ + pkg-config is a helper tool used when compiling applications and libraries. + It helps you insert the correct compiler options on the command line so an + application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other + libraries). +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://pkg-config.freedesktop.org/releases/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['6fc69c01688c9458a57eb9a1664c9aba372ccda420a02bf4429fe610e7e7d591'] + +builddependencies = [ + ('binutils', '2.28'), +] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 1491145f89ce6732bff600e8087173da71544eca Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 11:13:04 -0500 Subject: [PATCH 212/845] adding easyconfigs: libcerf-1.5-GCCcore-6.4.0.eb --- .../l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..5489e38fa7 --- /dev/null +++ b/easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libcerf' +version = '1.5' + +homepage = 'http://apps.jcns.fz-juelich.de/doku/sc/libcerf' + +description = """ + libcerf is a self-contained numeric library that provides an efficient and + accurate implementation of complex error functions, along with Dawson, + Faddeeva, and Voigt functions. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://apps.jcns.fz-juelich.de/src/libcerf/', + 'http://apps.jcns.fz-juelich.de/src/libcerf/old', +] +sources = [SOURCE_TGZ] +checksums = ['e36dc147e7fff81143074a21550c259b5aac1b99fc314fc0ae33294231ca5c86'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), + ('libtool', '2.4.6'), +] + +sanity_check_paths = { + 'files': ['lib/libcerf.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'math' -- GitLab From dd7f25269b3caf75267bbc72b1f8c422a1bff436 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 11:32:38 -0500 Subject: [PATCH 213/845] adding easyconfigs: libgd-2.2.4-GCCcore-6.4.0.eb --- .../l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb | 33 +++++++++++++++ .../libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ 2 files changed, 74 insertions(+) create mode 100644 easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..463baf18d2 --- /dev/null +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libgd' +version = '2.2.4' + +homepage = 'https://libgd.github.io/' + +description = "GD is an open source code library for the dynamic creation of images by programmers." + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/libgd/libgd/releases/download/gd-%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['487a650aa614217ed08ab1bd1aa5d282f9d379cfd95c756aed0b43406381be65'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('fontconfig', '2.12.1'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.30'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ["lib/libgd.a", "lib/libgd.%s" % SHLIB_EXT], + 'dirs': ["bin", "include"], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8d3ce16df6 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.2' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' + +description = """ + libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to + accelerate baseline JPEG compression and decompression. libjpeg is a library + that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['9098943b270388727ae61de82adec73cf9f0dbb240b3bc8b172595ebf405b528'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('NASM', '2.13.01'), +] + +configopts = "--with-jpeg8" + +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', + 'bin/tjbench', 'bin/wrjpgcom', 'lib/libjpeg.a', + 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', + 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' -- GitLab From adeb9bb2a9cd6918c1f206e42311825bf4a8a756 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 12:44:20 -0500 Subject: [PATCH 214/845] adding easyconfigs: OpenPGM-5.2.122-GCCcore-6.4.0.eb --- .../OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..88a05b260e --- /dev/null +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'OpenPGM' +version = '5.2.122' + +homepage = 'http://code.google.com/p/openpgm/' + +description = """ + OpenPGM is an open source implementation of the Pragmatic General Multicast + (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable + and scalable multicast protocol that enables receivers to detect loss, request + retransmission of lost data, or notify an application of unrecoverable loss. + PGM is a receiver-reliable protocol, which means the receiver is responsible + for ensuring all data is received, absolving the sender of reception + responsibility. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] +sources = ['libpgm-%(version)s.tar.gz'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] + +builddependencies = [ + ('binutils', '2.28'), +] + +start_dir = 'pgm' + +sanity_check_paths = { + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'], +} + +moduleclass = 'system' -- GitLab From 217f8e695bd496e581899383550b95d5585a4ec6 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 21 Jul 2017 13:01:29 -0500 Subject: [PATCH 215/845] adding easyconfigs: util-linux-2.30-GCCcore-6.4.0.eb --- .../util-linux-2.30-GCCcore-6.4.0.eb | 42 +++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3556edda8d --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.30' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' + +description = "Set of Linux utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e84cc32566abf28b84efb5ee326e1f3597c3d19b9916740f50c75bd57e498ce0'] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From 592668fa98063559f9089f1ef2a832a410bb0472 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 22 Jul 2017 06:22:27 -0500 Subject: [PATCH 216/845] adding easyconfigs: x264-20170721-GCCcore-6.4.0.eb --- .../x/x264/x264-20170721-GCCcore-6.4.0.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..073bcb840c --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20170721' + +homepage = 'http://www.videolan.org/developers/x264.html' + +description = """ + x264 is a free software library and application for encoding video streams + into the H.264/MPEG-4 AVC compression format, and is released under the + terms of the GNU GPL. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'https://download.videolan.org/pub/videolan/x264/snapshots/', + 'ftp://ftp.videolan.org/pub/videolan/x264/snapshots/', +] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] +checksums = ['1459f7b6683c90eafd9d7bf623a574968a94814cdf4b2fb57c0f73bf414d2c8d'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('Yasm', '1.3.0'), +] + +configopts = " --enable-shared --enable-static" + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', + 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From d8aa6264c758a46dbd3e383ac01a0746afcb70fb Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 22 Jul 2017 06:36:30 -0500 Subject: [PATCH 217/845] adding easyconfigs: Xerces-C++-3.1.4-GCCcore-6.4.0.eb --- .../Xerces-C++-3.1.4-GCCcore-6.4.0.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3832c17c46 --- /dev/null +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'Xerces-C++' +version = '3.1.4' + +homepage = 'http://xerces.apache.org/xerces-c/' + +description = """ + Xerces-C++ is a validating XML parser written in a portable subset of C++. + Xerces-C++ makes it easy to give your application the ability to read and + write XML data. A shared library is provided for parsing, generating, + manipulating, and validating XML documents using the DOM, SAX, and SAX2 + APIs. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://archive.apache.org/dist/xerces/c/%(version_major)s/sources/'] +sources = ['xerces-c-%(version)s.tar.gz'] +checksums = ['c98eedac4cf8a73b09366ad349cb3ef30640e7a3089d360d40a3dde93f66ecf6'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('cURL', '7.54.1'), +] + +sanity_check_paths = { + 'files': ['bin/XInclude', 'lib/libxerces-c.%s' % SHLIB_EXT], + 'dirs': ['include/xercesc/xinclude'], +} + +moduleclass = 'lib' -- GitLab From fab9fae15011bfe8f957612c7a578ba9e8187e33 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 22 Jul 2017 06:50:55 -0500 Subject: [PATCH 218/845] adding easyconfigs: StringTie-1.3.3-GCCcore-6.4.0.eb --- .../StringTie-1.3.3-GCCcore-6.4.0.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..4af7c0ed99 --- /dev/null +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'StringTie' +version = '1.3.3' + +homepage = 'http://ccb.jhu.edu/software/stringtie/' + +description = """ + StringTie is a fast and highly efficient assembler of RNA-Seq alignments + into potential transcripts. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://ccb.jhu.edu/software/stringtie/dl/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c01b16a681dc55f114dbfc2fcd725f615b2d9a79058ff8c110047cfa9cbe2976'] + +builddependencies = [ + ('binutils', '2.28'), +] + +files_to_copy = [(['stringtie'], 'bin'), 'README', 'LICENSE'] + +sanity_check_paths = { + 'files': ['bin/stringtie'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From d337a8b2274e4c37032c27356e39ca02facdac7c Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 22 Jul 2017 07:17:27 -0500 Subject: [PATCH 219/845] adding easyconfigs: Qhull-2015.2-GCCcore-6.4.0.eb --- .../q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..9734e3543a --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb @@ -0,0 +1,45 @@ +easyblock = 'CMakeMake' + +name = 'Qhull' +version = '2015.2' + +homepage = 'http://www.qhull.org' + +description = """ + Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, + halfspace intersection about a point, furthest-site Delaunay triangulation, + and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and + higher dimensions. Qhull implements the Quickhull algorithm for computing the + convex hull. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.qhull.org/download/'] +sources = ['%(namelower)s-%(version_major)s-src-7.%(version_minor)s.0.tgz'] +checksums = ['78b010925c3b577adc3d58278787d7df08f7c8fb02c3490e375eab91bb58a436'] + +patches = [ + 'Qhull-%(version)s-intel-fix.patch', + 'Qhull_pkgconfig.patch', +] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +sanity_check_paths = { + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, + 'lib/pkgconfig/qhull.pc'], + 'dirs': [], +} + +modextrapaths = { + 'CPATH': ['qhull/include'], +} + +parallel = 1 + +moduleclass = 'math' -- GitLab From 41a89ae9d2873dadfe5f3d680ec059255f2d1ce0 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 22 Jul 2017 07:30:16 -0500 Subject: [PATCH 220/845] fix EB URL --- .../easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb index 4af7c0ed99..8347d427b4 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics -- GitLab From 11743dfa52e8fc92ad9d29abfe9b349976d1e6ad Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 22 Jul 2017 09:51:51 -0500 Subject: [PATCH 221/845] adding easyconfigs: numactl-2.0.11-GCCcore-6.4.0.eb --- .../n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..7ce46ec76c --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' + +description = """ + The numactl program allows you to run your application program on specific + cpu's and memory nodes. It does this by supplying a NUMA memory policy to + the operating system before running your program. The libnuma library provides + convenient ways for you to add NUMA memory policies into your own program. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['450c091235f891ee874a8651b179c30f57a1391ca5c4673354740ba65e527861'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' -- GitLab From cecf4e6330edc61b7c419df38a61bbb263e01148 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 23 Jul 2017 12:58:02 -0500 Subject: [PATCH 222/845] adding easyconfigs: LittleCMS-2.8-GCCcore-6.4.0.eb --- .../LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb | 35 ++++++++++++++++ .../libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ 2 files changed, 76 insertions(+) create mode 100644 easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..fda360d04d --- /dev/null +++ b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'LittleCMS' +version = '2.8' + +homepage = 'http://www.littlecms.com/' + +description = """ + Little CMS intends to be an OPEN SOURCE small-footprint color management + engine, with special focus on accuracy and performance. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://sourceforge.net/projects/lcms/files/lcms/%(version)s/'] +sources = ['lcms2-%(version)s.tar.gz'] +checksums = ['66d02b229d2ea9474e62c2b6cd6720fde946155cd1d0d2bffdab829790a0fb22'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libjpeg-turbo', '1.5.2'), +] + +sanity_check_paths = { + 'files': ['bin/jpgicc', 'bin/linkicc', 'bin/psicc', 'bin/transicc', + 'include/lcms2.h', 'include/lcms2_plugin.h', 'lib/liblcms2.a', + 'lib/liblcms2.%s' % SHLIB_EXT, 'lib/pkgconfig/lcms2.pc'], + 'dirs': ['share/man'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8d3ce16df6 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.2' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' + +description = """ + libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to + accelerate baseline JPEG compression and decompression. libjpeg is a library + that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['9098943b270388727ae61de82adec73cf9f0dbb240b3bc8b172595ebf405b528'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('NASM', '2.13.01'), +] + +configopts = "--with-jpeg8" + +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', + 'bin/tjbench', 'bin/wrjpgcom', 'lib/libjpeg.a', + 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', + 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' -- GitLab From 05782da44b5db1407fcd265e5ed26148f8973335 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 23 Jul 2017 21:14:33 -0500 Subject: [PATCH 223/845] adding easyconfigs: nettle-3.3-GCCcore-6.4.0.eb --- .../n/nettle/nettle-3.3-GCCcore-6.4.0.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..ec88285ad3 --- /dev/null +++ b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'nettle' +version = '3.3' + +homepage = 'http://www.lysator.liu.se/~nisse/nettle/' + +description = """ + Nettle is a cryptographic library that is designed to fit easily in more or + less any context: In crypto toolkits for object-oriented languages (C++, + Python, Pike, ...), in applications like LSH or GNUPG, or even in + kernel space. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['46942627d5d0ca11720fec18d81fc38f7ef837ea4197c1f630e71ce0d470b11e'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GMP', '6.1.2'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', + 'pkcs1-conv', 'sexp-conv']] + + ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, + 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + 'dirs': ['include/nettle'], +} + +moduleclass = 'lib' -- GitLab From 20a3b73cc962b9526d078de85c8a002e95e300b3 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 23 Jul 2017 21:46:01 -0500 Subject: [PATCH 224/845] adding easyconfigs: MPFR-3.1.5-GCCcore-6.4.0.eb --- .../m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..b3d040944b --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.5' + +homepage = 'http://www.mpfr.org' + +description = """ + The MPFR library is a C library for multiple-precision floating-point + computations with correct rounding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658'] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GMP', '6.1.2'), +] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 86a06bdd617bfb5428ceb5224ecb94bfec00c7df Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 23 Jul 2017 22:19:49 -0500 Subject: [PATCH 225/845] adding easyconfigs: METIS-5.1.0-GCCcore-6.4.0.eb --- .../m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3845c5050b --- /dev/null +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +name = 'METIS' +version = '5.1.0' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' + +description = """ + METIS is a set of serial programs for partitioning graphs, partitioning + finite element meshes, and producing fill reducing orderings for sparse + matrices. The algorithms implemented in METIS are based on the multilevel + recursive-bisection, multilevel k-way, and multi-constraint partitioning + schemes. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', +] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['76faebe03f6c963127dbb73c13eab58c9a3faeae48779f049066a21c087c5db2'] + +# We use 32bit for indices and 64bit for content +patches = ['METIS-5.1.0-use-doubles.patch'] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +configopts = ['', 'shared=1'] + +moduleclass = 'math' -- GitLab From 8c74f9fc39db31ab3c7780e50e5c732bbb57a93d Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Mon, 24 Jul 2017 10:29:55 +0200 Subject: [PATCH 226/845] fix moduleclass for Cookiecutter --- .../Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb index df729ad2ff..928a132412 100644 --- a/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb @@ -78,4 +78,4 @@ sanity_check_paths = { modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} -moduleclass = 'bio' +moduleclass = 'tools' -- GitLab From 284d51c25c7736dfc250f3415454e6d0c4671c4f Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 07:53:10 -0500 Subject: [PATCH 227/845] adding easyconfigs: Java-1.8.0_141.eb --- .../easyconfigs/j/Java/Java-1.8.0_141.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb new file mode 100644 index 0000000000..5ecb4ab81c --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb @@ -0,0 +1,20 @@ +name = 'Java' +version = '1.8.0_141' + +homepage = 'http://java.com/' + +description = """ + Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from +# http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] +checksums = ['041d5218fbea6cd7e81c8c15e51d0d32911573af2ed69e066787a8dc8a39ba4f'] + +moduleclass = 'lang' -- GitLab From ee0c897759c9410ea13ef0b611d07b5d47185da5 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 08:15:13 -0500 Subject: [PATCH 228/845] adding easyconfigs: ART-2016.06.05-GCCcore-6.4.0.eb --- .../a/ART/ART-2016.06.05-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f15d1e1ba6 --- /dev/null +++ b/easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ART' +version = '2016.06.05' + +homepage = 'http://www.niehs.nih.gov/research/resources/software/biostatistics/art/' + +description = """ + ART is a set of simulation tools to generate synthetic next-generation sequencing reads" +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.niehs.nih.gov/research/resources/assets/docs/'] +sources = ['artsrcmountrainier%slinuxtgz.tgz' % ''.join(version.split('.'))] +checksums = ['69aede60884eb848de043aae5294274b7ca6348b7384a8380f0ac5a4dfeff488'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GSL', '2.4'), +] + +sanity_check_paths = { + 'files': ['bin/aln2bed.pl', 'bin/art_454', 'bin/art_illumina', + 'bin/art_profiler_454', 'bin/art_profiler_illumina', + 'bin/art_SOLiD', 'bin/combinedAvg.pl', 'bin/empDist.pl', + 'bin/fastqReadAvg.pl', 'bin/map2bed.pl', 'bin/summation.pl'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From ce1dcd63f731e2750806bd2f2922a475e9f446ee Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 08:40:57 -0500 Subject: [PATCH 229/845] adding easyconfigs: Blosc-1.12.1-GCCcore-6.4.0.eb --- .../b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..ca8add747d --- /dev/null +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb @@ -0,0 +1,27 @@ +easyblock = 'CMakeMake' + +name = 'Blosc' +version = '1.12.1' + +homepage = 'http://www.blosc.org/' + +description = "Blosc, an extremely fast, multi-threaded, meta-compressor library" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/Blosc/c-blosc/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8'] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +sanity_check_paths = { + 'files': ['include/blosc-export.h', 'include/blosc.h', 'lib/libblosc.a', + 'lib/libblosc.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 68c9c7d7e9c1b4a80b4e208f690c7f353257c4a0 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 09:01:44 -0500 Subject: [PATCH 230/845] adding easyconfigs: BWA-0.7.15-GCCcore-6.4.0.eb --- .../b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..01ef5ad9dc --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.15' + +homepage = 'http://bio-bwa.sourceforge.net/' + +description = """ + Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively + short nucleotide sequences against a long reference sequence such as the human + genome. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/lh3/%(name)s/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['126d247e6ab8a8c215bec248f9174a15c6d960c193330e659a2b686f2964cfbd'] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'bio' -- GitLab From 2a5855b03fe9099918fc63aa1842f80287d5d111 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 09:26:38 -0500 Subject: [PATCH 231/845] adding easyconfigs: CppUnit-1.12.1-GCCcore-6.4.0.eb --- .../c/CppUnit/CppUnit-1.12.1-GCCcore-6.4.0.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..048b593ee0 --- /dev/null +++ b/easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'CppUnit' +version = '1.12.1' + +homepage = 'http://sourceforge.net/projects/cppunit/' + +description = """ + CppUnit is the C++ port of the famous JUnit framework for unit testing. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ac28a04c8e6c9217d910b0ae7122832d28d9917fa668bcc9e0b8b09acb4ea44a'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['lib/libcppunit.a', 'lib/libcppunit.%s' % SHLIB_EXT, + 'lib/pkgconfig/cppunit.pc'], + 'dirs': ['bin', 'include/cppunit', 'share'], +} + +moduleclass = 'tools' -- GitLab From b54e0653afafe1a941826399fefb9f5e7186b7b3 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 09:50:56 -0500 Subject: [PATCH 232/845] adding easyconfigs: Doxygen-1.8.13-GCCcore-6.4.0.eb --- .../d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb | 26 ++++++++++++++ .../pkg-config-0.29.2-GCCcore-6.4.0.eb | 36 +++++++++++++++++++ 2 files changed, 62 insertions(+) create mode 100644 easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..ed9c7f458e --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +name = 'Doxygen' +version = '1.8.13' + +homepage = 'http://www.doxygen.org' + +description = """ + Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some + extent D. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +checksums = ['af667887bd7a87dc0dbf9ac8d86c96b552dfb8ca9c790ed1cbffaa6131573f6b'] + +builddependencies = [ + ('binutils', '2.28'), + ('Bison', '3.0.4'), + ('CMake', '3.8.2'), + ('flex', '2.6.4'), + ('pkg-config', '0.29.2'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..c02bedf48d --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29.2' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' + +description = """ + pkg-config is a helper tool used when compiling applications and libraries. + It helps you insert the correct compiler options on the command line so an + application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other + libraries). +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://pkg-config.freedesktop.org/releases/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['6fc69c01688c9458a57eb9a1664c9aba372ccda420a02bf4429fe610e7e7d591'] + +builddependencies = [ + ('binutils', '2.28'), +] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 4ba5efbc6a22807c30d91e6dad0e80f686f4700b Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Mon, 24 Jul 2017 10:12:05 -0500 Subject: [PATCH 233/845] adding easyconfigs: eudev-3.2.2-GCCcore-6.4.0.eb --- .../e/eudev/eudev-3.2.2-GCCcore-6.4.0.eb | 40 +++++++++++++++++++ .../g/gperf/gperf-3.1-GCCcore-6.4.0.eb | 31 ++++++++++++++ 2 files changed, 71 insertions(+) create mode 100644 easybuild/easyconfigs/e/eudev/eudev-3.2.2-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.2.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/eudev/eudev-3.2.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..a6182b36f4 --- /dev/null +++ b/easybuild/easyconfigs/e/eudev/eudev-3.2.2-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'eudev' +version = '3.2.2' + +homepage = 'https://wiki.gentoo.org/wiki/Project:Eudev' + +description = """ + eudev is a fork of systemd-udev with the goal of obtaining better + compatibility with existing software such as OpenRC and Upstart, + older kernels, various toolchains and anything else required by + users and various distributions. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://dev.gentoo.org/~blueness/%(name)s/'] +sources = [SOURCE_TAR_GZ] +checksums = ['3e4c56ec2fc1854afd0a31f3affa48f922c62d40ee12a0c1a4b4f152ef5b0f63'] + +patches = ['%(name)s-3.1.2_pre-2.6.34_kernel.patch'] + +builddependencies = [ + ('binutils', '2.28'), + ('gperf', '3.1'), +] + +osdependencies = [('kernel-headers', 'linux-libc-dev')] + +configopts = '--disable-blkid --disable-selinux --disable-manpages ' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', + 'lib/libudev.so.1'], + 'dirs': [], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..6dd680f7e4 --- /dev/null +++ b/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'gperf' +version = '3.1' + +homepage = 'http://www.gnu.org/software/gperf/' + +description = """ + GNU gperf is a perfect hash function generator. For a given list of strings, + it produces a hash function and hash table, in form of C or C++ code, for + looking up a value depending on the input string. The hash function is + perfect, which means that the hash table has no collisions, and the hash + table lookup needs a single string comparison only. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['588546b945bba4b70b6a3a616e80b4ab466e3f33024a352fc2198112cdbb3ae2'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/gperf'], + 'dirs': [] +} + +moduleclass = 'devel' -- GitLab From d4ef20f7ad04bc73be38c195d5621f1bff787e29 Mon Sep 17 00:00:00 2001 From: Robert Date: Wed, 26 Jul 2017 12:27:36 +0930 Subject: [PATCH 234/845] GRIDSS easyconfig added --- .../GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb | 47 +++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb diff --git a/easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb b/easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb new file mode 100644 index 0000000000..da8862ae04 --- /dev/null +++ b/easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb @@ -0,0 +1,47 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: GPL-v3.0 +# +# Notes:: +## + +easyblock = 'Binary' + +name = 'GRIDSS' +version = '1.4.1' + +homepage = 'https://github.com/PapenfussLab/gridss' +description = """ GRIDSS a module software suite containing tools +useful for the detection genomic rearrangements. +GRIDSS includes a genome-wide break-end assembler, +as well as a structural variation caller for Illumina sequencing data. +GRIDSS calls variants based on alignment-guided positional de Bruijn graph +genome-wide break-end assembly, split read, and read pair evidence. +""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/PapenfussLab/gridss/releases/download/v%(version)s'] +sources = ['%(name)s-%(version)s-jar-with-dependencies.jar'] + +java = 'Java' +javaver = '1.8.0_121' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [ + (java, javaver, '', True), + ('R', '3.4.0'), +] + +sanity_check_paths = { + 'files': ['%(name)s-%(version)s-jar-with-dependencies.jar'], + 'dirs': [], +} + +modloadmsg = 'To execute GRIDSS run: java -jar $EBROOTGRIDSS/%(name)s-%(version)s-jar-with-dependencies.jar\n' + +moduleclass = 'bio' -- GitLab From da70e5076f4b1ee2cad32def558cd126b31713d0 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 26 Jul 2017 08:33:56 -0500 Subject: [PATCH 235/845] adding easyconfigs: hwloc-1.11.7-GCCcore-6.4.0.eb --- .../h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ .../n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb | 31 ++++++++++++++ 2 files changed, 72 insertions(+) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..aed499874e --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' + +description = """ + The Portable Hardware Locality (hwloc) software package provides a portable + abstraction (across OS, versions, architectures, ...) of the hierarchical + topology of modern architectures, including NUMA memory nodes, sockets, shared + caches, cores and simultaneous multithreading. It also gathers various system + attributes such as cache and memory information as well as the locality of I/O + devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily + aims at helping applications with gathering information about modern computing + hardware so as to exploit it accordingly and efficiently. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] +checksums = ['ac16bed9cdd3c63bca1fe1ac3de522a1376b1487c4fc85b7b19592e28fd98e26'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('numactl', '2.0.11'), +] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +sanity_check_paths = { + 'files': ['bin/lstopo', 'include/hwloc/linux.h', 'sbin/hwloc-dump-hwdata', + 'lib/libhwloc.%s' % SHLIB_EXT], + 'dirs': ['share/man/man3'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..7ce46ec76c --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' + +description = """ + The numactl program allows you to run your application program on specific + cpu's and memory nodes. It does this by supplying a NUMA memory policy to + the operating system before running your program. The libnuma library provides + convenient ways for you to add NUMA memory policies into your own program. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['450c091235f891ee874a8651b179c30f57a1391ca5c4673354740ba65e527861'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' -- GitLab From 3da7cf78fb7bb50b1edc37d9223477382a598ab3 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Wed, 26 Jul 2017 09:30:17 -0500 Subject: [PATCH 236/845] adding easyconfigs: libevent-2.1.8-GCCcore-6.4.0.eb --- .../libevent/libevent-2.1.8-GCCcore-6.4.0.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/l/libevent/libevent-2.1.8-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.1.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libevent/libevent-2.1.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..2b1365f41e --- /dev/null +++ b/easybuild/easyconfigs/l/libevent/libevent-2.1.8-GCCcore-6.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libevent' +version = '2.1.8' + +homepage = 'http://libevent.org/' + +description = """ + The libevent API provides a mechanism to execute a callback function when + a specific event occurs on a file descriptor or after a timeout has been + reached. Furthermore, libevent also support callbacks due to signals or + regular timeouts. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/%(name)s/%(name)s/releases/download/release-%(version)s-stable/'] +sources = ['%(name)s-%(version)s-stable.tar.gz'] +checksums = ['965cc5a8bb46ce4199a47e9b2c9e1cae3b137e8356ffdad6d94d3b9069b71dc2'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/event_rpcgen.py', 'include/event.h', 'include/event2/event.h', + 'lib/libevent_core.%s' % SHLIB_EXT, 'lib/pkgconfig/libevent.pc'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From a594817e166bac17c9d70276af611030be22379d Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 10:34:11 +0930 Subject: [PATCH 237/845] GRIDSS removed --- .../GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb | 47 ------------------- 1 file changed, 47 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb diff --git a/easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb b/easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb deleted file mode 100644 index da8862ae04..0000000000 --- a/easybuild/easyconfigs/g/GRIDSS/GRIDSS-1.4.1-foss-2016b-Java-1.8.0_121.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exe Escobedo -# License:: GPL-v3.0 -# -# Notes:: -## - -easyblock = 'Binary' - -name = 'GRIDSS' -version = '1.4.1' - -homepage = 'https://github.com/PapenfussLab/gridss' -description = """ GRIDSS a module software suite containing tools -useful for the detection genomic rearrangements. -GRIDSS includes a genome-wide break-end assembler, -as well as a structural variation caller for Illumina sequencing data. -GRIDSS calls variants based on alignment-guided positional de Bruijn graph -genome-wide break-end assembly, split read, and read pair evidence. -""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['https://github.com/PapenfussLab/gridss/releases/download/v%(version)s'] -sources = ['%(name)s-%(version)s-jar-with-dependencies.jar'] - -java = 'Java' -javaver = '1.8.0_121' -versionsuffix = '-%s-%s' % (java, javaver) - -dependencies = [ - (java, javaver, '', True), - ('R', '3.4.0'), -] - -sanity_check_paths = { - 'files': ['%(name)s-%(version)s-jar-with-dependencies.jar'], - 'dirs': [], -} - -modloadmsg = 'To execute GRIDSS run: java -jar $EBROOTGRIDSS/%(name)s-%(version)s-jar-with-dependencies.jar\n' - -moduleclass = 'bio' -- GitLab From cf13ceae12d3bf04f635a240c8200c43e7867ea2 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Thu, 27 Jul 2017 11:33:32 +0930 Subject: [PATCH 238/845] erratum --- easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb | 2 +- .../PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb | 2 ++ .../p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb | 9 ++++++--- 3 files changed, 9 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb index ceb6b4b6b3..b34d5dc185 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb @@ -18,7 +18,7 @@ description = """Burrows-Wheeler Aligner (BWA) is an efficient program that alig relatively short nucleotide sequences against a long reference sequence such as the human genome.""" toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} +toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb index 69afe0d8b8..17ca3dd82f 100644 --- a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb @@ -34,6 +34,8 @@ dependencies = [ ('Python', '2.7.12'), ('numexpr', '2.6.1', versionsuffix), ('HDF5', '1.8.18'), + ('LZO', '2.10'), + ('Blosc', '1.12.1'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb index 417ee652b8..3d9c40570f 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb @@ -18,11 +18,11 @@ description = """Pysam is a python module for reading and manipulating Samfiles. toolchain = {'name': 'foss', 'version': '2016b'} -parallel = 1 +source_urls = ['https://github.com/pysam-developers/pysam/archive/'] +sources = ['v%(version)s.tar.gz'] dependencies = [ ('Python', '2.7.12'), - ('Cython', '0.25.2', versionsuffix), ('ncurses', '6.0'), ('zlib', '1.2.8'), ('cURL', '7.49.1'), @@ -33,6 +33,9 @@ exts_defaultclass = 'PythonPackage' exts_filter = ("python -c 'import %(ext_name)s'", '') exts_list = [ + ('Cython', '0.25.2', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + }), ('pysam', version, { 'source_tmpl': 'v%(version)s.tar.gz', 'source_urls': ['https://github.com/pysam-developers/pysam/archive/'], @@ -45,7 +48,7 @@ modextrapaths = { sanity_check_paths = { 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/pysam-%(version)s-py%(pyshortver)s-linux-x86_64.egg'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], } moduleclass = 'bio' -- GitLab From 38e5a51f88ca9ec5022f79b2d01ea15ddf3b54e9 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 11:36:21 +0930 Subject: [PATCH 239/845] more deps added --- .../b/Blosc/Blosc-1.12.1-foss-2016b.eb | 32 +++++++++++++++++ .../easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb | 34 +++++++++++++++++++ 2 files changed, 66 insertions(+) create mode 100644 easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb create mode 100644 easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb new file mode 100644 index 0000000000..e6c95a3b77 --- /dev/null +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb @@ -0,0 +1,32 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: BSD +# +# Notes:: +## + +easyblock = 'CMakeMake' + +name = 'Blosc' +version = '1.12.1' + +homepage = 'http://www.blosc.org/' +description = "Blosc, an extremely fast, multi-threaded, meta-compressor library" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/Blosc/c-blosc/archive/'] +sources = ['v%(version)s.tar.gz'] + +builddependencies = [('CMake', '3.7.2')] + +sanity_check_paths = { + 'files': ['include/blosc-export.h', 'include/blosc.h', 'lib/libblosc.a', 'lib/libblosc.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb new file mode 100644 index 0000000000..3e18b6f723 --- /dev/null +++ b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb @@ -0,0 +1,34 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: MIT/GPL +# +# Notes:: Adopted from EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Fotis Georgatos +## + +easyblock = 'ConfigureMake' + +name = 'LZO' +version = '2.10' + +homepage = 'http://www.oberhumer.com/opensource/lzo/' +description = "Portable lossless data compression library" + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage + 'download/'] + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +runtest = 'test' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib', 'include'] +} + +moduleclass = 'devel' -- GitLab From 43185b86cd36a25234b106afeba9810d7a349f16 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Thu, 27 Jul 2017 11:51:14 +0930 Subject: [PATCH 240/845] erratum --- .../p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb | 3 --- 1 file changed, 3 deletions(-) diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb index 3d9c40570f..1883ed4c3a 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb @@ -18,9 +18,6 @@ description = """Pysam is a python module for reading and manipulating Samfiles. toolchain = {'name': 'foss', 'version': '2016b'} -source_urls = ['https://github.com/pysam-developers/pysam/archive/'] -sources = ['v%(version)s.tar.gz'] - dependencies = [ ('Python', '2.7.12'), ('ncurses', '6.0'), -- GitLab From 319aab57534399ac9c28f73068fc9120e2e192a2 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 12:29:11 +0930 Subject: [PATCH 241/845] formatting error --- .../GroopM-0.3.4-foss-2016b-Python-2.7.12.eb | 2 +- .../libunistring-0.9.7-GCCcore-6.4.0.eb | 33 --------------- .../Pysam-0.10.0-foss-2016b-Python-2.7.12.eb | 4 +- .../util-linux-2.30-GCCcore-6.4.0.eb | 42 ------------------- 4 files changed, 3 insertions(+), 78 deletions(-) delete mode 100644 easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb delete mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb index 508fa6454b..c2df780ed6 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb @@ -28,7 +28,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('Python', '2.7.12'), ('Cython', '0.25.2', versionsuffix), - ('matplotlib', '1.5.2', versionsuffix), + ('matplotlib', '1.5.2', versionsuffix), ('Pysam', '0.10.0', versionsuffix), ('PyTables', '3.3.0', versionsuffix), ('PIL', '1.1.7', versionsuffix), diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb deleted file mode 100644 index 8d845c9877..0000000000 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libunistring' -version = '0.9.7' - -homepage = 'http://www.gnu.org/software/libunistring/' - -description = """ - This library provides functions for manipulating Unicode strings and for - manipulating C strings according to the Unicode standard. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_XZ] -source_urls = [GNU_SOURCE] -checksums = ['2e3764512aaf2ce598af5a38818c0ea23dedf1ff5460070d1b6cee5c3336e797'] - -builddependencies = [ - ('binutils', '2.28'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs': ['include/unistring'], -} - -moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb index 1883ed4c3a..2b20d1cb81 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb @@ -21,8 +21,8 @@ toolchain = {'name': 'foss', 'version': '2016b'} dependencies = [ ('Python', '2.7.12'), ('ncurses', '6.0'), - ('zlib', '1.2.8'), - ('cURL', '7.49.1'), + ('zlib', '1.2.8'), + ('cURL', '7.49.1'), ] # this is a bundle of Python packages diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb deleted file mode 100644 index 3556edda8d..0000000000 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'util-linux' -version = '2.30' - -homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' - -description = "Set of Linux utilities" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -source_urls = ['%s/v%%(version_major_minor)s' % homepage] -sources = [SOURCELOWER_TAR_GZ] -checksums = ['e84cc32566abf28b84efb5ee326e1f3597c3d19b9916740f50c75bd57e498ce0'] - -# disable account related utilities (they need OS dependant pam-devel files) -# disable wall and friends (requires group changing permissions for install user) -# install systemd service files in install dir -# install bash completion files in install dir -configopts = "--disable-chfn-chsh --disable-login --disable-su " -configopts += "--disable-wall --disable-use-tty-group " -configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " -configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " -configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " -# disable building Python bindings (since we don't include Python as a dep) -configopts += "--without-python " - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('ncurses', '6.0'), -] - -sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], - 'dirs': ['include', 'bin', 'share', 'sbin'], -} - -moduleclass = 'tools' -- GitLab From 0ead13292dc089ed82d30720b162597a017b97a0 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 12:34:43 +0930 Subject: [PATCH 242/845] formatting error correction --- .../p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb index 2b20d1cb81..b341dbe1c1 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb index d688d2f69e..b99bb23bc1 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos -- GitLab From 9036bcfbbc5d32f247f48e568e96f4ab263277a8 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 12:41:35 +0930 Subject: [PATCH 243/845] format error correction --- easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb index b34d5dc185..2e5a357fa6 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos -- GitLab From cd0c8c5b5f0aef72e4b7e6d8d504031cfd77aa9d Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Thu, 27 Jul 2017 17:59:17 +0930 Subject: [PATCH 244/845] BAMM checksum --- easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb | 2 ++ .../g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb | 1 + 2 files changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb index 67e73478f5..455fb6ff14 100644 --- a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb @@ -25,6 +25,8 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/macroevolution/bamm/archive'] sources = ['v%(version)s.tar.gz'] +checksum = ['sha256':'8fb42c11aa636f74b14d780029e98558e5b2f1f0c18732deb957f598268061ee'] + builddependencies = [ ('CMake', '3.7.2'), ] diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb index c2df780ed6..12f6cbd8f8 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb @@ -20,6 +20,7 @@ description = """ GroopM is a metagenomic binning toolset. It leverages spatio-t dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets. """ + toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_SOURCE] -- GitLab From 4b397081891f476c2b4c9b299554c44275d5e543 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 18:29:34 +0930 Subject: [PATCH 245/845] checksum added --- easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb | 2 ++ .../easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 2 ++ easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb | 1 + easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb | 2 ++ .../easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb | 2 ++ 6 files changed, 10 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb index 455fb6ff14..f3fb7d53c9 100644 --- a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb @@ -25,7 +25,7 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/macroevolution/bamm/archive'] sources = ['v%(version)s.tar.gz'] -checksum = ['sha256':'8fb42c11aa636f74b14d780029e98558e5b2f1f0c18732deb957f598268061ee'] +checksums = ['526eef85ef011780ee21fe65cbc10ecc62efe54044102ae40bdef49c2985b4f4','sha256'] builddependencies = [ ('CMake', '3.7.2'), diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb index 2e5a357fa6..50d340dd46 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb @@ -23,4 +23,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] +checksums = ['fcf470a46a1dbe2f96a1c5b87c530554', 'md5'] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index d0986b1904..127247b759 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -24,6 +24,8 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/Ecogenomics/BamM/archive'] sources = ['%(version)s.tar.gz'] +checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', 'sha256'] + dependencies = [ ('Python', '2.7.12'), ('SAMtools', '1.3.1'), diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb index e6c95a3b77..27f46a5ff7 100644 --- a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/Blosc/c-blosc/archive/'] sources = ['v%(version)s.tar.gz'] +checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8', 'sha256'] builddependencies = [('CMake', '3.7.2')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb index 3e18b6f723..c441b07fff 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb @@ -21,6 +21,8 @@ description = "Portable lossless data compression library" sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage + 'download/'] +checksums = ['c0f892943208266f9b6543b3ae308fab6284c5c90e627931446fb49b4221a072', 'sha256'] + toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True} diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb index 447ed8f4a5..c9faf5c376 100644 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb @@ -24,6 +24,8 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['http://effbot.org/downloads/'] sources = ['Imaging-%(version)s.tar.gz'] +checksums = ['895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211', 'sha256'] + patches = ['PIL-%(version)s-find-deps.patch'] dependencies = [ -- GitLab From 967c0760a1ec83a1dca0a36b39aed82249471556 Mon Sep 17 00:00:00 2001 From: Robert Date: Thu, 27 Jul 2017 18:51:05 +0930 Subject: [PATCH 246/845] formatting error --- easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb index f3fb7d53c9..8121c45137 100644 --- a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb @@ -25,7 +25,7 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/macroevolution/bamm/archive'] sources = ['v%(version)s.tar.gz'] -checksums = ['526eef85ef011780ee21fe65cbc10ecc62efe54044102ae40bdef49c2985b4f4','sha256'] +checksums = ['526eef85ef011780ee21fe65cbc10ecc62efe54044102ae40bdef49c2985b4f4', 'sha256'] builddependencies = [ ('CMake', '3.7.2'), -- GitLab From 1aa1485ec33bfa6a4859838ddd8377e552056d60 Mon Sep 17 00:00:00 2001 From: Robert Date: Fri, 28 Jul 2017 15:09:55 +0930 Subject: [PATCH 247/845] libtools included for BamM --- .../easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index 127247b759..e984cb7d44 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -26,6 +26,10 @@ sources = ['%(version)s.tar.gz'] checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', 'sha256'] +buildopts = [ + ('libtool', '2.4.6'), +] + dependencies = [ ('Python', '2.7.12'), ('SAMtools', '1.3.1'), -- GitLab From f698b4ee26696140fc041b2da53dbddaccc1eb80 Mon Sep 17 00:00:00 2001 From: Robert Date: Fri, 28 Jul 2017 15:29:11 +0930 Subject: [PATCH 248/845] PIL checksum updated --- .../easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb index c9faf5c376..e3972be37c 100644 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb @@ -24,7 +24,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['http://effbot.org/downloads/'] sources = ['Imaging-%(version)s.tar.gz'] -checksums = ['895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211', 'sha256'] +checksums = ['895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211'] patches = ['PIL-%(version)s-find-deps.patch'] -- GitLab From 029e8f838f6a180415aa145bc626d2cfe576e919 Mon Sep 17 00:00:00 2001 From: Robert Date: Sat, 29 Jul 2017 00:03:17 +0930 Subject: [PATCH 249/845] BamM typo correction --- .../easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index e984cb7d44..9fee9ab6a5 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -26,7 +26,7 @@ sources = ['%(version)s.tar.gz'] checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', 'sha256'] -buildopts = [ +builddependencies = [ ('libtool', '2.4.6'), ] -- GitLab From 084936e3093f9797191baa6555b53f921f8ebf02 Mon Sep 17 00:00:00 2001 From: Robert Date: Sat, 29 Jul 2017 00:12:54 +0930 Subject: [PATCH 250/845] PyTable openmp enabled --- .../p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb index 17ca3dd82f..1c01866e0c 100644 --- a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb @@ -25,7 +25,7 @@ description = """PyTables is a package for managing hierarchical datasets and de relational or object oriented databases.""" toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'usempi': True} +toolchainopts = {'openmp': True, 'usempi': True} source_urls = ['https://github.com/PyTables/PyTables/archive/'] sources = ['v%(version)s.tar.gz'] -- GitLab From 28b767c0395f6cb5deb4bc65988ff3ff16b32bec Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 29 Jul 2017 07:30:50 -0500 Subject: [PATCH 251/845] maintain sanity? --- .../e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb | 16 ---------------- 1 file changed, 16 deletions(-) diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb index 7fd77a3b5e..50d8127475 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb @@ -14,20 +14,4 @@ source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] sources = ['%(version)s.tar.bz2'] checksums = ['dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6'] -# both in Eigen 2.x an 3.x -include_files = ['Cholesky', 'Core', 'Dense', 'Eigen', 'Geometry', 'LU', - 'QR', 'QtAlignedMalloc', 'SVD', 'Sparse', 'StdVector'] - -# only 3.x -include_files.extend(['CholmodSupport', 'Eigenvalues', 'Householder', - 'IterativeLinearSolvers', 'Jacobi', 'OrderingMethods', - 'PaStiXSupport', 'PardisoSupport', 'SparseCholesky', - 'SparseCore', 'StdDeque', 'StdList', - 'SuperLUSupport', 'UmfPackSupport']) - -sanity_check_paths = { - 'files': ['include/Eigen/%s' % x for x in include_files], - 'dirs': ['include'], -} - moduleclass = 'math' -- GitLab From fde9be252bf4ee9831e3f0e5f38767f398dd3f1c Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 29 Jul 2017 09:26:04 -0500 Subject: [PATCH 252/845] update source_urls --- easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb index d9d3d1bf33..3c1b56f7a9 100644 --- a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb @@ -14,7 +14,7 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -source_urls = [GNU_SOURCE] +source_urls = ['ftp://ftp.gnu.org/pub/gnu/%(namelower)s/release/%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = ['8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890'] @@ -32,7 +32,7 @@ dependencies = [ ] prebuildopts = """ - sed -e 's/ac_cv_have_decl_rl_readline_state" = x""yes/ac_cv_have_decl_rl_readline_state" = x""JKP/'\ + sed -e 's/ac_cv_have_decl_rl_readline_state" = x""yes/ac_cv_have_decl_rl_readline_state" = x""FOOBAR/'\ -i.eb modules/readline/configure cd src """ -- GitLab From 3c45e078c04c75583e6a8d441b025c2c7abcb613 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Mon, 31 Jul 2017 00:57:08 +0930 Subject: [PATCH 253/845] PyTable patch applied --- .../p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb index 17ca3dd82f..feafbc59b9 100644 --- a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb @@ -30,6 +30,8 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/PyTables/PyTables/archive/'] sources = ['v%(version)s.tar.gz'] +patches = ['pyTables-3.2.2-fix-libs.patch'] + dependencies = [ ('Python', '2.7.12'), ('numexpr', '2.6.1', versionsuffix), -- GitLab From 23625fc62166e63234e92ce4efdceaddc5efc8aa Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 11:13:54 -0500 Subject: [PATCH 254/845] adding easyconfigs: Python-2.7.13-GCCcore-6.4.0-bare.eb --- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 56 +++++++++++++++++++ 1 file changed, 56 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb new file mode 100644 index 0000000000..0860032fc3 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb @@ -0,0 +1,56 @@ +name = 'Python' +version = '2.7.13' +versionsuffix = '-bare' + +homepage = 'http://python.org/' + +description = """ + Python is a programming language that lets you work more quickly and + integrate your systems more effectively. + +Note: This module is meant to provide a builddependency for other Python + modules while using EasyBuild's --minimaltoolchain option. Modules + built with it will require the full Python later +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.19.3'), + ('zlib', '1.2.11'), +] + +osdependencies = [ + # rely upon distribution for timely security updates + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +# We hide this by default since users should not use it in production, +# high-performance Python should be delivered at compiler level with +# a default extension set +# hidden = True + +# bare installation: only known module deps for GCCcore tools included +exts_list = [] + +# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... +# add RPATH so this can be used as a builddependency for "bare" PythonPackages +preconfigopts = """ + sed -e\ + 's:$(LINKCC) $(LDFLAGS) $(LINKFORSHARED):$(LINKCC) $(LDFLAGS) $(LINKFORSHARED) -Wl,-rpath=%(installdir)s/lib:'\ + -i.eb Makefile.pre.in +""" + +moduleclass = 'lang' -- GitLab From a7ac403f432ad2c13e58f3acc796e63458b8b954 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 11:48:09 -0500 Subject: [PATCH 255/845] Delete libunistring-0.9.7-GCCcore-6.4.0.eb --- .../libunistring-0.9.7-GCCcore-6.4.0.eb | 33 ------------------- 1 file changed, 33 deletions(-) delete mode 100644 easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb deleted file mode 100644 index 8d845c9877..0000000000 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libunistring' -version = '0.9.7' - -homepage = 'http://www.gnu.org/software/libunistring/' - -description = """ - This library provides functions for manipulating Unicode strings and for - manipulating C strings according to the Unicode standard. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_XZ] -source_urls = [GNU_SOURCE] -checksums = ['2e3764512aaf2ce598af5a38818c0ea23dedf1ff5460070d1b6cee5c3336e797'] - -builddependencies = [ - ('binutils', '2.28'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs': ['include/unistring'], -} - -moduleclass = 'lib' -- GitLab From 1c28386218cdc615b5771570f4049e33fc3a8a90 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 12:02:30 -0500 Subject: [PATCH 256/845] Delete libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb --- .../libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb | 41 ------------------- 1 file changed, 41 deletions(-) delete mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb deleted file mode 100644 index 8d3ce16df6..0000000000 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libjpeg-turbo' -version = '1.5.2' - -homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' - -description = """ - libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to - accelerate baseline JPEG compression and decompression. libjpeg is a library - that implements JPEG image encoding, decoding and transcoding. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] -checksums = ['9098943b270388727ae61de82adec73cf9f0dbb240b3bc8b172595ebf405b528'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('NASM', '2.13.01'), -] - -configopts = "--with-jpeg8" - -runtest = "test" - -sanity_check_paths = { - 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', - 'bin/tjbench', 'bin/wrjpgcom', 'lib/libjpeg.a', - 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', - 'lib/libturbojpeg.%s' % SHLIB_EXT], - 'dirs': ['include', 'share'], -} - -moduleclass = 'lib' -- GitLab From a75dcbc044720f4a6b8f0c0ad624664849c070bf Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 21:28:39 -0500 Subject: [PATCH 257/845] Delete Python-2.7.13-GCCcore-6.4.0-bare.eb --- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 53 ------------------- 1 file changed, 53 deletions(-) delete mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb deleted file mode 100644 index 42f2730022..0000000000 --- a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb +++ /dev/null @@ -1,53 +0,0 @@ -name = 'Python' -version = '2.7.13' -versionsuffix = '-bare' - -homepage = 'http://python.org/' - -description = """ - Python is a programming language that lets you work more quickly and - integrate your systems more effectively. - -Note: This module is meant to provide a builddependency for other Python - modules while using EasyBuild's --minimaltoolchain option. Modules - built with it will require the full Python later -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('bzip2', '1.0.6'), - ('libreadline', '7.0'), - ('ncurses', '6.0'), - ('SQLite', '3.19.3'), - ('zlib', '1.2.11'), -] - -osdependencies = [ - # rely upon distribution for timely security updates - ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), -] - -# We hide this by default since users should not use it in production, -# high-performance Python should be delivered at compiler level with -# a default extension set -#hidden = True - -# bare installation: only known module deps for GCCcore tools included -exts_list = [] - -# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... -# add RPATH so this can be as a builddependency later -prebuildopts = """ - sed -e 's:Modules/python.o \\\\:-Wl,-rpath=%(installdir)s/lib Modules/python.o \\\\:' -i.eb Makefile -""" - -moduleclass = 'lang' -- GitLab From a3a406c2b7102dd2f0c9c482541b568f95b7e312 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 21:30:52 -0500 Subject: [PATCH 258/845] Delete SQLite-3.19.3-GCCcore-6.4.0.eb --- .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 ------------------- 1 file changed, 49 deletions(-) delete mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb deleted file mode 100644 index 9d9a1ef2eb..0000000000 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb +++ /dev/null @@ -1,49 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the -# policy: http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.19.3' - -homepage = 'http://www.sqlite.org/' - -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz -source_urls = ['http://www.sqlite.org/2017/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % - int(x) for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] -checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('libreadline', '7.0'), - ('Tcl', '8.6.6'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', - 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' -- GitLab From 0c423acce71c630ac5c6cfad40118b75c405e9b6 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 21:32:47 -0500 Subject: [PATCH 259/845] Delete Tcl-8.6.6-GCCcore-6.4.0.eb --- .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 ------------------- 1 file changed, 42 deletions(-) delete mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb deleted file mode 100644 index cffeed4270..0000000000 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Tcl' -version = '8.6.6' - -homepage = 'http://www.tcl.tk/' - -description = """ - Tcl (Tool Command Language) is a very powerful but easy to learn dynamic - programming language, suitable for a very wide range of uses, including web - and desktop applications, networking, administration, testing and many more. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = ["http://prdownloads.sourceforge.net/tcl"] -sources = ['%(namelower)s%(version)s-src.tar.gz'] -checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('zlib', '1.2.11'), -] - -configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' - -runtest = 'test' - -start_dir = 'unix' - -sanity_check_paths = { - 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', - 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, - 'lib/tclConfig.sh', 'man/man1/tclsh.1'], - 'dirs': ['share'], -} - - -moduleclass = 'lang' -- GitLab From 6c75575777ad354b2dd5a8b944c0136ab16d4e03 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 22:02:20 -0500 Subject: [PATCH 260/845] Delete Tcl-8.6.6-GCCcore-6.4.0.eb --- .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 ------------------- 1 file changed, 42 deletions(-) delete mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb deleted file mode 100644 index cffeed4270..0000000000 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Tcl' -version = '8.6.6' - -homepage = 'http://www.tcl.tk/' - -description = """ - Tcl (Tool Command Language) is a very powerful but easy to learn dynamic - programming language, suitable for a very wide range of uses, including web - and desktop applications, networking, administration, testing and many more. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = ["http://prdownloads.sourceforge.net/tcl"] -sources = ['%(namelower)s%(version)s-src.tar.gz'] -checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('zlib', '1.2.11'), -] - -configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' - -runtest = 'test' - -start_dir = 'unix' - -sanity_check_paths = { - 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', - 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, - 'lib/tclConfig.sh', 'man/man1/tclsh.1'], - 'dirs': ['share'], -} - - -moduleclass = 'lang' -- GitLab From 50f5d5c089d44c209bca454a419f3176ab3d57f4 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 22:13:24 -0500 Subject: [PATCH 261/845] Delete SQLite-3.19.3-GCCcore-6.4.0.eb --- .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 ------------------- 1 file changed, 49 deletions(-) delete mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb deleted file mode 100644 index 9d9a1ef2eb..0000000000 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb +++ /dev/null @@ -1,49 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the -# policy: http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.19.3' - -homepage = 'http://www.sqlite.org/' - -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz -source_urls = ['http://www.sqlite.org/2017/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % - int(x) for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] -checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('libreadline', '7.0'), - ('Tcl', '8.6.6'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', - 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' -- GitLab From 5c4acb95df7f7f96f5aafb834c283c326c32ff67 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 22:14:45 -0500 Subject: [PATCH 262/845] Delete Python-2.7.13-GCCcore-6.4.0-bare.eb --- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 53 ------------------- 1 file changed, 53 deletions(-) delete mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb deleted file mode 100644 index 42f2730022..0000000000 --- a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb +++ /dev/null @@ -1,53 +0,0 @@ -name = 'Python' -version = '2.7.13' -versionsuffix = '-bare' - -homepage = 'http://python.org/' - -description = """ - Python is a programming language that lets you work more quickly and - integrate your systems more effectively. - -Note: This module is meant to provide a builddependency for other Python - modules while using EasyBuild's --minimaltoolchain option. Modules - built with it will require the full Python later -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('bzip2', '1.0.6'), - ('libreadline', '7.0'), - ('ncurses', '6.0'), - ('SQLite', '3.19.3'), - ('zlib', '1.2.11'), -] - -osdependencies = [ - # rely upon distribution for timely security updates - ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), -] - -# We hide this by default since users should not use it in production, -# high-performance Python should be delivered at compiler level with -# a default extension set -#hidden = True - -# bare installation: only known module deps for GCCcore tools included -exts_list = [] - -# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... -# add RPATH so this can be as a builddependency later -prebuildopts = """ - sed -e 's:Modules/python.o \\\\:-Wl,-rpath=%(installdir)s/lib Modules/python.o \\\\:' -i.eb Makefile -""" - -moduleclass = 'lang' -- GitLab From b7c4726f9a935ee6ab09e5533b08923f081beb45 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 22:44:00 -0500 Subject: [PATCH 263/845] Delete Python-2.7.13-GCCcore-6.4.0-bare.eb --- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 53 ------------------- 1 file changed, 53 deletions(-) delete mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb deleted file mode 100644 index 42f2730022..0000000000 --- a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb +++ /dev/null @@ -1,53 +0,0 @@ -name = 'Python' -version = '2.7.13' -versionsuffix = '-bare' - -homepage = 'http://python.org/' - -description = """ - Python is a programming language that lets you work more quickly and - integrate your systems more effectively. - -Note: This module is meant to provide a builddependency for other Python - modules while using EasyBuild's --minimaltoolchain option. Modules - built with it will require the full Python later -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('bzip2', '1.0.6'), - ('libreadline', '7.0'), - ('ncurses', '6.0'), - ('SQLite', '3.19.3'), - ('zlib', '1.2.11'), -] - -osdependencies = [ - # rely upon distribution for timely security updates - ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), -] - -# We hide this by default since users should not use it in production, -# high-performance Python should be delivered at compiler level with -# a default extension set -#hidden = True - -# bare installation: only known module deps for GCCcore tools included -exts_list = [] - -# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... -# add RPATH so this can be as a builddependency later -prebuildopts = """ - sed -e 's:Modules/python.o \\\\:-Wl,-rpath=%(installdir)s/lib Modules/python.o \\\\:' -i.eb Makefile -""" - -moduleclass = 'lang' -- GitLab From 2882d52b16ed84921f8d81eb8c9c15e64e96abbf Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 22:48:34 -0500 Subject: [PATCH 264/845] Delete Tcl-8.6.6-GCCcore-6.4.0.eb --- .../t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb | 42 ------------------- 1 file changed, 42 deletions(-) delete mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb deleted file mode 100644 index cffeed4270..0000000000 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Tcl' -version = '8.6.6' - -homepage = 'http://www.tcl.tk/' - -description = """ - Tcl (Tool Command Language) is a very powerful but easy to learn dynamic - programming language, suitable for a very wide range of uses, including web - and desktop applications, networking, administration, testing and many more. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = ["http://prdownloads.sourceforge.net/tcl"] -sources = ['%(namelower)s%(version)s-src.tar.gz'] -checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('zlib', '1.2.11'), -] - -configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' - -runtest = 'test' - -start_dir = 'unix' - -sanity_check_paths = { - 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', - 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, - 'lib/tclConfig.sh', 'man/man1/tclsh.1'], - 'dirs': ['share'], -} - - -moduleclass = 'lang' -- GitLab From 510bbce052acacc75653f3a60428fbc57a802c43 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sun, 30 Jul 2017 22:49:37 -0500 Subject: [PATCH 265/845] Delete SQLite-3.19.3-GCCcore-6.4.0.eb --- .../s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb | 49 ------------------- 1 file changed, 49 deletions(-) delete mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb deleted file mode 100644 index 9d9a1ef2eb..0000000000 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb +++ /dev/null @@ -1,49 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the -# policy: http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.19.3' - -homepage = 'http://www.sqlite.org/' - -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz -source_urls = ['http://www.sqlite.org/2017/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % - int(x) for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] -checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('libreadline', '7.0'), - ('Tcl', '8.6.6'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', - 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' -- GitLab From c3663ed7ff25ee37f67a6b84550ff964eacfe019 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Mon, 31 Jul 2017 07:18:00 +0200 Subject: [PATCH 266/845] Remove sanity check Already covered by EasyBlock --- .../easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb | 9 --------- 1 file changed, 9 deletions(-) diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb index bea5f1dfd7..5fcd3f7ba0 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb @@ -29,15 +29,6 @@ checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] dependencies = [('tbb', '2017_U5')] -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bowtie2', 'bowtie2-align-l', 'bowtie2-align-s', 'bowtie2-build', - 'bowtie2-build-l', 'bowtie2-build-s', 'bowtie2-inspect', 'bowtie2-inspect-l', - 'bowtie2-inspect-s']], - 'dirs': [] -} - -sanity_check_commands = [('bowtie2', '--version')] - # to add script folder to path just uncomment this line # modextrapaths = {'PATH': 'scripts'} -- GitLab From 1cb3ce7bcb03c19a0e8d952e30be2e2113e86534 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Mon, 31 Jul 2017 07:19:34 +0200 Subject: [PATCH 267/845] Remove sanity check Already covered by EasyBlock --- .../easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb | 8 -------- 1 file changed, 8 deletions(-) diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb index 28f4c0d027..8e5cbc7d40 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb @@ -17,12 +17,4 @@ checksums = ['71d708c957380e115ba420a96ac5f8456c6a61760a5f4dbe06305df6a42131d8'] dependencies = [('tbb', '2017_U5')] -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bowtie', 'bowtie-align-l', 'bowtie-align-s', 'bowtie-build', 'bowtie-build-l', - 'bowtie-build-s', 'bowtie-inspect', 'bowtie-inspect-l', 'bowtie-inspect-s']], - 'dirs': [] -} - -sanity_check_commands = [('bowtie', '--version')] - moduleclass = 'bio' -- GitLab From 06fed4f60c1b7539a8d82b70a74f240229949e1f Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Mon, 31 Jul 2017 13:24:32 +0200 Subject: [PATCH 268/845] Added checksums. --- .../protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb | 1 + easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb | 1 + .../t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb | 4 ++++ 3 files changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb index 59e1c3f2a3..1fc0c3020a 100644 --- a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] sources = [SOURCE_TAR_GZ] +checksums = ['94c414775f275d876e5e0e4a276527d155ab2d0da45eed6b7734301c330be36e'], dependencies = [ ('Python', '3.5.2'), diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb b/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb index c0f51b2532..38730e09d9 100755 --- a/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb +++ b/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/'] sources = [SOURCE_TAR_GZ] +checksums = ['94c414775f275d876e5e0e4a276527d155ab2d0da45eed6b7734301c330be36e'] builddependencies = [('Autotools', '20150215')] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb index 4a3961b38c..3e1b5f606e 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb @@ -24,15 +24,19 @@ exts_list = [ ('backports.weakref', '1.0rc1', { 'modulename': 'backports.weakref', 'source_urls': ['https://pypi.python.org/packages/source/b/backports.weakref'], + 'checksums': ['8813bf712a66b3d8b85dc289e1104ed220f1878cf981e2fe756dfaabe9a82892'], }), ('Werkzeug', '0.12.2', { 'source_urls': ['https://pypi.python.org/packages/source/w/Werkzeug'], + 'checksums': ['903a7b87b74635244548b30d30db4c8947fe64c5198f58899ddcd3a13c23bb26'], }), ('bleach', '2.0.0', { 'source_urls': ['https://pypi.python.org/packages/source/b/bleach'], + 'checksums': ['b9522130003e4caedf4f00a39c120a906dcd4242329c1c8f621f5370203cbc30'], }), ('Markdown', '2.6.8', { 'source_urls': ['https://pypi.python.org/packages/source/m/Markdown'], + 'checksums': ['0ac8a81e658167da95d063a9279c9c1b2699f37c7c4153256a458b3a43860e33'], }), ('tensorflow', version, { 'source_urls': ['https://pypi.python.org/packages/source/t/tensorflow'], -- GitLab From 713a2c1ec1ffab2596f660925a5e5767bdcac529 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Mon, 31 Jul 2017 22:09:24 +0930 Subject: [PATCH 269/845] BamM removed --- .../BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 44 ------------------- 1 file changed, 44 deletions(-) delete mode 100644 easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index 9fee9ab6a5..0000000000 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,44 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exequiel Sepulveda -# License:: GPL-v3.0 -# -# Notes:: -## - -easyblock = 'PythonPackage' - -name = 'BamM' -version = '1.7.3' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://ecogenomics.github.io/BamM/' -description = """ BamM is a c library, wrapped in python, that parses BAM files """ - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'usempi': True} - -source_urls = ['https://github.com/Ecogenomics/BamM/archive'] -sources = ['%(version)s.tar.gz'] - -checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', 'sha256'] - -builddependencies = [ - ('libtool', '2.4.6'), -] - -dependencies = [ - ('Python', '2.7.12'), - ('SAMtools', '1.3.1'), - ('BWA', '0.7.15'), -] - -sanity_check_paths = { - 'files': ['bin/bamm'], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -moduleclass = 'bio' -- GitLab From 8533fa5024fe9ab7aec8921a3a863eeb09a23e42 Mon Sep 17 00:00:00 2001 From: jrbosch Date: Mon, 31 Jul 2017 11:19:19 -0400 Subject: [PATCH 270/845] improving easyconfig file --- ...d-build.eb => GROMACS-2016.3-foss-2016b-GPU-enabled.eb} | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/g/GROMACS/{GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb => GROMACS-2016.3-foss-2016b-GPU-enabled.eb} (89%) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb similarity index 89% rename from easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb rename to easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb index 7d8210d268..6d8f8f3924 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled-build.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb @@ -14,7 +14,7 @@ name = 'GROMACS' version = '2016.3' -versionsuffix = '-GPU-enabled-build' +versionsuffix = '-GPU-enabled' homepage = 'http://www.gromacs.org' description = """ @@ -30,6 +30,10 @@ toolchainopts = {'openmp': True, 'usempi': True} source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] sources = [SOURCELOWER_TAR_GZ] +checksums = [ + '7bf00e74a9d38b7cef9356141d20e4ba9387289cbbfd4d11be479ef932d77d27', # gromacs-2016.3.tar.gz +] + patches = [ 'GROMACS-%(version)s_amend_search_for_nvml_lib.patch', ] @@ -43,3 +47,4 @@ builddependencies = [ ] moduleclass = 'bio' + -- GitLab From ddbb0927511b643674aba0c7287b75f7474ac1c5 Mon Sep 17 00:00:00 2001 From: Robert Date: Tue, 1 Aug 2017 00:52:54 +0930 Subject: [PATCH 271/845] reorganising --- .../BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..0e28fe9620 --- /dev/null +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,45 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: GPL-v3.0 +# +# Notes:: +## + +easyblock = 'PythonPackage' + +name = 'BamM' +version = '1.7.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://ecogenomics.github.io/BamM/' +description = """ BamM is a c library, wrapped in python, that parses BAM files """ + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/Ecogenomics/BamM/archive'] +sources = ['%(version)s.tar.gz'] + +checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', 'sha256'] + +builddependencies = [ + ('libtool', '2.4.6'), + ('Automake', '1.15'), +] + +dependencies = [ + ('Python', '2.7.13'), + ('SAMtools', '1.3.1'), + ('BWA', '0.7.15'), +] + +sanity_check_paths = { + 'files': ['bin/bamm'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' -- GitLab From d3cfdf8e4a286ef29220276b24080694a8850c04 Mon Sep 17 00:00:00 2001 From: jrbosch Date: Mon, 31 Jul 2017 11:40:12 -0400 Subject: [PATCH 272/845] removing blank line at end of file --- .../g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb index 6d8f8f3924..38bb91bb4e 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb @@ -47,4 +47,3 @@ builddependencies = [ ] moduleclass = 'bio' - -- GitLab From 536b36ca5afe18fc801b1cfc9411db0aa3ccb313 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 1 Aug 2017 11:46:43 +0100 Subject: [PATCH 273/845] adding easyconfigs: SAMtools-1.5-foss-2016b.eb --- .../s/SAMtools/SAMtools-1.5-foss-2016b.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100755 easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb new file mode 100755 index 0000000000..30006e4f3c --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# Modified by: Adam Huffman +# The Francis Crick Institute +# +# Modified for version 1.4 by: Kurt Lust, UAntwerpen +# +## +name = 'SAMtools' +version = '1.5' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['8542da26832ee08c1978713f5f6188ff750635b50d8ab126a0c7bb2ac1ae2df6'] + +# The htslib component of SAMtools 1.4 uses zlib, bzip2 and lzma compression. +# The latter is currently provided by XZ. +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.2'), +] + +moduleclass = 'bio' -- GitLab From 12634789b1a3b8f8f7cf60e7cc40f4e4fa4603f5 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 1 Aug 2017 06:53:03 -0500 Subject: [PATCH 274/845] adding easyconfigs: Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb --- ...n-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000..9875d3b964 --- /dev/null +++ b/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,35 @@ +easyblock = 'PythonPackage' + +name = 'Cython' +version = '0.26' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'https://pypi.python.org/pypi/Cython/' + +description = """ + The Cython language makes writing C extensions for the Python language as easy + as Python itself. Cython is a source code translator based on the well-known + Pyrex, but supports more cutting edge functionality and optimizations. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['4c24e2c22ddaed624d35229dc5db25049e9e225c6f64f3364326836cad8f2c66'] + +builddependencies = [ + ('binutils', '2.28'), + ('Python', pyver, pysubver), +] + +sanity_check_paths = { + 'files': ['bin/cygdb', 'bin/%(namelower)s', + 'lib/python%s/site-packages/%%(namelower)s.py' % pyshortver], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pyshortver], +} + +moduleclass = 'lang' -- GitLab From 9157a389daf2d304b1a42a33202176c1cf975680 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 1 Aug 2017 07:13:11 -0500 Subject: [PATCH 275/845] comment patch --- easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb | 4 ++++ easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch | 3 +++ 2 files changed, 7 insertions(+) diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb index 0042955a0b..f5201cbea5 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb @@ -26,6 +26,10 @@ checksums = ['6f031fa40bc15b1d80d502ff91f83ba14f4b079e886bfb83221374f7bf5c8f9a'] # Patch Makefile so zlib provided by EasyBuild is picked up patches = ['%(name)s-%(version)s_Makefile.patch'] +builddependencies = [ + ('binutils', '2.28'), +] + dependencies = [ ('zlib', '1.2.11'), ] diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch b/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch index 05008c1033..685a17d8ca 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch @@ -1,3 +1,6 @@ +# Patch Makefile so zlib provided by EasyBuild is picked up +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + --- Makefile.orig 2017-07-12 22:16:56.931252958 -0500 +++ Makefile 2017-07-12 22:25:34.472386094 -0500 @@ -1,12 +1,11 @@ -- GitLab From 7b99aa36388573e1f5fa6244c6f43d5894b91198 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 1 Aug 2017 08:05:14 -0500 Subject: [PATCH 276/845] add upstream patch --- .../c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb | 5 +++-- .../c/CLISP/patch-modules_readline_readline.lisp | 15 +++++++++++++++ 2 files changed, 18 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb index 3c1b56f7a9..1f086b8886 100644 --- a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb @@ -18,6 +18,9 @@ source_urls = ['ftp://ftp.gnu.org/pub/gnu/%(namelower)s/release/%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = ['8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890'] +# from: https://sourceforge.net/p/clisp/bugs/688/ +patches = ['patch-modules_readline_readline.lisp'] + builddependencies = [ ('binutils', '2.28'), ] @@ -32,8 +35,6 @@ dependencies = [ ] prebuildopts = """ - sed -e 's/ac_cv_have_decl_rl_readline_state" = x""yes/ac_cv_have_decl_rl_readline_state" = x""FOOBAR/'\ - -i.eb modules/readline/configure cd src """ diff --git a/easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp b/easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp new file mode 100644 index 0000000000..19c54f96d6 --- /dev/null +++ b/easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp @@ -0,0 +1,15 @@ +$NetBSD: patch-modules_readline_readline.lisp,v 1.1 2016/09/20 14:10:25 wiz Exp $ + +rl_readline_state changed from int to unsigned long in readline-7.0. + +--- modules/readline/readline.lisp.orig 2010-01-06 22:18:03.000000000 +0000 ++++ modules/readline/readline.lisp +@@ -424,7 +424,7 @@ name in ~/.inputrc. This is preferred wa + "The version of this incarnation of the readline library, e.g., 0x0402.")) + (def-c-var gnu-readline-p (:name "rl_gnu_readline_p") (:type int) + (:documentation "True if this is real GNU readline.")) +-(def-c-var readline-state (:name "rl_readline_state") (:type int) ++(def-c-var readline-state (:name "rl_readline_state") (:type ulong) + (:documentation "Flags word encapsulating the current readline state.")) + (def-c-var editing-mode (:name "rl_editing_mode") (:type int) + (:documentation "Says which editing mode readline is currently using. -- GitLab From 549d46d3606c36ee0fe3678a50d12e0173e8018f Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 1 Aug 2017 15:23:56 +0100 Subject: [PATCH 277/845] adding easyconfigs: BWA-0.7.16a-foss-2016b.eb, BWA-0.7.16a-intel-2017a.eb --- .../b/BWA/BWA-0.7.16a-foss-2016b.eb | 34 +++++++++++++++++++ .../b/BWA/BWA-0.7.16a-intel-2017a.eb | 34 +++++++++++++++++++ 2 files changed, 68 insertions(+) create mode 100755 easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb create mode 100755 easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb new file mode 100755 index 0000000000..cfc64d5813 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.16a' +subver = '0.7.16' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/lh3/bwa/releases/download/v%s/' % subver] +sources = ['%(namelower)s-%(version)s.tar.bz2'] +checksums = ['8fecdb5f88871351bbe050c18d6078121456c36ad75c5c78f33a926560ffc170'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb new file mode 100755 index 0000000000..c1ee916e24 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.16a' +subver = '0.7.16' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/lh3/bwa/releases/download/v%s/' % subver] +sources = ['%(namelower)s-%(version)s.tar.bz2'] +checksums = ['8fecdb5f88871351bbe050c18d6078121456c36ad75c5c78f33a926560ffc170'] + +moduleclass = 'bio' -- GitLab From b5c5581f2145e580d19c85de9ddddd2e3b0d6be9 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Tue, 1 Aug 2017 13:31:26 -0500 Subject: [PATCH 278/845] adding easyconfigs: Java-1.8.0_144.eb --- .../easyconfigs/j/Java/Java-1.8.0_144.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb new file mode 100644 index 0000000000..dc8a2bb0a1 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb @@ -0,0 +1,20 @@ +name = 'Java' +version = '1.8.0_144' + +homepage = 'http://java.com/' + +description = """ + Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from +# http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] +checksums = ['e8a341ce566f32c3d06f6d0f0eeea9a0f434f538d22af949ae58bc86f2eeaae4'] + +moduleclass = 'lang' -- GitLab From 45eb3aef6e8299babec116a5a0dc1882526dbf5f Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Wed, 2 Aug 2017 12:34:43 -0400 Subject: [PATCH 279/845] adding easyconfigs: IntelClusterChecker-2017.1.016.eb --- .../IntelClusterChecker-2017.1.016.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb diff --git a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb new file mode 100644 index 0000000000..20452bc2cb --- /dev/null +++ b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb @@ -0,0 +1,38 @@ +easyblock = "IntelBase" + +name = 'IntelClusterChecker' +version = '2017.1.016' + +homepage = 'https://software.intel.com/en-us/intel-cluster-checker' +description = """Verifies cluster components work together ― for + - better uptime and productivity and lower total + - cost of ownership (TCO) + """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_clck_p_%(version)s.tgz'] + +checksums = ['84e7c00bf1f9b87e248dd62e4df7e3b7'] + +dontcreateinstalldir = 'True' + +license_file = HOME + 'license.lic' + +modextrapaths = { + 'CPLUS_INCLUDE_PATH': 'clck/%(version)s/include', + 'LIBRARY_PATH': 'clck/%(version)s/lib/intel64', + 'PATH': 'clck/%(version)s/bin/intel64' +} + +sanity_check_paths = { + 'files': ['clck/%(version)s/bin/clckvars.sh', + 'clck/%(version)s/bin/clckvars.csh', + 'clck/%(version)s/bin/intel64/clck-analyze', + 'clck/%(version)s/bin/intel64/clck-collect', + 'clck/%(version)s/bin/intel64/clckdb'], + 'dirs': [], +} + + +moduleclass = 'tools' -- GitLab From 160fd99826d832c066cea6fd3eb51187766edde7 Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Wed, 2 Aug 2017 12:37:18 -0400 Subject: [PATCH 280/845] fixing license path --- .../i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb index 20452bc2cb..037ff3b325 100644 --- a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb +++ b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb @@ -17,7 +17,7 @@ checksums = ['84e7c00bf1f9b87e248dd62e4df7e3b7'] dontcreateinstalldir = 'True' -license_file = HOME + 'license.lic' +license_file = HOME + '/licenses/intel/license.lic' modextrapaths = { 'CPLUS_INCLUDE_PATH': 'clck/%(version)s/include', -- GitLab From 81a338c4cded59a94ad8d9fbb6020e6be37053c0 Mon Sep 17 00:00:00 2001 From: frenchwr Date: Wed, 2 Aug 2017 14:26:02 -0500 Subject: [PATCH 281/845] add updated version of singularity --- .../Singularity-2.3.1-GCC-5.4.0-2.26.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb diff --git a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000..a71dd25439 --- /dev/null +++ b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'Singularity' +version = '2.3.1' + +homepage = 'http://gmkurtzer.github.io/singularity' +description = """Singularity is a portable application stack packaging and runtime utility.""" + +toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} + +source_urls = ['https://github.com/gmkurtzer/singularity/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['d25be31b443969b12179fbdb6db38c24002f06234bf923424bda1d662ad34e71'] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['bin/run-singularity', 'bin/singularity', 'etc/singularity/singularity.conf', + 'libexec/singularity/bin/action-suid'], + 'dirs': ['etc', 'libexec/singularity'], +} + +# next steps after instalations +# INSTALATION_PATH=your_instalation_path +# chown root:root $INSTALATION_PATH/Singularity/*/etc/singularity/singularity.conf +# chown root:root $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# chown root:root $INSTALATION_PATH/Singularity/*/var/singularity/mnt/container +# chmod 4755 $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# chmod +s $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid + +moduleclass = 'tools' + -- GitLab From a1876330f2da4c05deb5ed983bfdf402806ed979 Mon Sep 17 00:00:00 2001 From: frenchwr Date: Wed, 2 Aug 2017 15:10:14 -0500 Subject: [PATCH 282/845] fix style --- .../s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb index a71dd25439..3852a69875 100644 --- a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb @@ -17,7 +17,7 @@ builddependencies = [('Autotools', '20150215')] preconfigopts = './autogen.sh && ' sanity_check_paths = { - 'files': ['bin/run-singularity', 'bin/singularity', 'etc/singularity/singularity.conf', + 'files': ['bin/run-singularity', 'bin/singularity', 'etc/singularity/singularity.conf', 'libexec/singularity/bin/action-suid'], 'dirs': ['etc', 'libexec/singularity'], } @@ -31,4 +31,3 @@ sanity_check_paths = { # chmod +s $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid moduleclass = 'tools' - -- GitLab From 6768de1892c9b7c0d6a10732bdd8766d51334585 Mon Sep 17 00:00:00 2001 From: frenchwr Date: Thu, 3 Aug 2017 07:20:52 -0500 Subject: [PATCH 283/845] fix spelling of installation --- .../s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb index 3852a69875..7e7221e7b3 100644 --- a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb @@ -22,7 +22,7 @@ sanity_check_paths = { 'dirs': ['etc', 'libexec/singularity'], } -# next steps after instalations +# next steps after installation # INSTALATION_PATH=your_instalation_path # chown root:root $INSTALATION_PATH/Singularity/*/etc/singularity/singularity.conf # chown root:root $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid -- GitLab From ddc316e4d204267c6bec0b5301460c6e3f43b32a Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 3 Aug 2017 16:04:55 +0200 Subject: [PATCH 284/845] {bio}[foss/2017a] Trinity 2.4.0 (REVIEW) --- .../b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb | 18 + .../b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb | 32 + .../p/Perl/Perl-5.24.1-foss-2017a.eb | 907 ++++++++++++++++++ .../t/Trinity/Trinity-2.4.0-foss-2017a.eb | 34 + .../t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb | 17 + 5 files changed, 1008 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb create mode 100644 easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb create mode 100644 easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..a46b5265d0 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb @@ -0,0 +1,18 @@ +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +name = 'Bowtie' +version = '1.1.2' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. +It aligns short DNA sequences (reads) to the human genome. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb new file mode 100644 index 0000000000..9d4236c5ff --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute +# Modified by: Kurt Lust, UAntwerp + +name = 'Bowtie2' +version = '2.3.2' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'cstd': 'gnu++98'} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +dependencies = [('tbb', '2017_U6')] + +# to add script folder to path just uncomment this line +# modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb new file mode 100644 index 0000000000..c45b3b6b14 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb @@ -0,0 +1,907 @@ +name = 'Perl' +version = '5.24.1' + +homepage = 'https://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] + +# !! order of extensions is important !! +# extensions updated on April 4th 2017 +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Helpers', '0.026', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Test::Harness', '3.38', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Text::Glob', '0.11', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('Regexp::Common', '2016060801', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('File::ShareDir::Install', '0.11', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('DateTime::Locale', '1.16', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('DateTime::TimeZone', '2.11', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Module::Build', '0.4222', { + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + }), + ('Try::Tiny', '0.28', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Params::Validate', '1.26', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('List::MoreUtils', '0.418', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Exporter::Tiny', '0.044', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('DateTime', '1.42', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + }), + ('DBI', '1.636', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Archive::Extract', '0.80', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Simple', '1.302078', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::SAX::Base', '1.09', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('XML::NamespaceSupport', '1.12', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + }), + ('Test::Exception', '0.43', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::Table', '1.132', { + 'source_tmpl': 'Text-Table-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('MIME::Types', '2.13', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + }), + ('HTML::Parser', '3.72', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('URI', '1.71', { + 'source_tmpl': 'URI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Pod::POM', '2.01', { + 'source_tmpl': 'Pod-POM-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Math::Round', '0.07', { + 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'Meta-Builder-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Getopt::Long', '2.49.1', { + 'source_tmpl': 'Getopt-Long-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Mouse', 'v2.4.9', { + 'source_tmpl': 'Mouse-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Test::Version', '2.05', { + 'source_tmpl': 'Test-Version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('DBIx::Admin::TableInfo', '3.03', { + 'source_tmpl': 'DBIx-Admin-TableInfo-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Net::HTTP', '6.13', { + 'source_tmpl': 'Net-HTTP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + }), + ('Test::Deep', '1.126', { + 'source_tmpl': 'Test-Deep-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warn', '0.32', { + 'source_tmpl': 'Test-Warn-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BIGJ'], + }), + ('MRO::Compat', '0.13', { + 'source_tmpl': 'MRO-Compat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Moo', '2.003002', { + 'source_tmpl': 'Moo-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Hash::Merge', '0.200', { + 'source_tmpl': 'Hash-Merge-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('SQL::Abstract', '1.84', { + 'source_tmpl': 'SQL-Abstract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILMARI'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('HTML::Entities::Interpolate', '1.10', { + 'source_tmpl': 'HTML-Entities-Interpolate-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Test::Most', '0.35', { + 'source_tmpl': 'Test-Most-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OV/OVID'], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Test::Differences', '0.64', { + 'source_tmpl': 'Test-Differences-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTTP::Tiny', '0.070', { + 'source_tmpl': 'HTTP-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('Package::DeprecationManager', '0.17', { + 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('version', '0.9917', { + 'source_tmpl': 'version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + 'patches': ['XML-Bare-0.53_icc.patch'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Sub::Name', '0.21', { + 'source_tmpl': 'Sub-Name-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece', '1.31', { + 'source_tmpl': 'Time-Piece-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ES/ESAYM'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Canary::Stability', '2012', { + 'source_tmpl': 'Canary-Stability-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('AnyEvent', '7.13', { + 'source_tmpl': 'AnyEvent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Net::SMTP::SSL', '1.04', { + 'source_tmpl': 'Net-SMTP-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Devel::GlobalDestruction', '0.14', { + 'source_tmpl': 'Devel-GlobalDestruction-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Expect', '1.33', { + 'source_tmpl': 'Expect-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JA/JACOBY'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('Statistics::Descriptive', '3.0612', { + 'source_tmpl': 'Statistics-Descriptive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('LWP::Simple', '6.25', { + 'source_tmpl': 'libwww-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('GD::Graph', '1.54', { + 'source_tmpl': 'GDGraph-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('boolean', '0.46', { + 'source_tmpl': 'boolean-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Class::Inspector', '1.31', { + 'source_tmpl': 'Class-Inspector-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('Parse::RecDescent', '1.967014', { + 'source_tmpl': 'Parse-RecDescent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + }), + ('Carp', '1.38', { + 'source_tmpl': 'Carp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::XPath', '1.40', { + 'source_tmpl': 'XML-XPath-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + }), + ('Capture::Tiny', '0.46', { + 'source_tmpl': 'Capture-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + }), + ('Sub::Exporter::Progressive', '0.001013', { + 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('strictures', '2.000003', { + 'source_tmpl': 'strictures-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('File::Which', '1.21', { + 'source_tmpl': 'File-Which-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Mock::Quick', '1.111', { + 'source_tmpl': 'Mock-Quick-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::CSV', '1.92', { + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + }), + ('Test::Output', '1.031', { + 'source_tmpl': 'Test-Output-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('List::AllUtils', '0.14', { + 'source_tmpl': 'List-AllUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Exception::Class', '1.42', { + 'source_tmpl': 'Exception-Class-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + }), + ('Eval::Closure', '0.14', { + 'source_tmpl': 'Eval-Closure-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('HTTP::Request', '6.11', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('XML::Twig', '3.52', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::Simple', '2.22', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('HTTP::Cookies', '6.03', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + }), + ('Test::Exception::LessClever', '0.009', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Scalar::Util', '1.47', { + 'source_tmpl': 'Scalar-List-Utils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Format', '0.60', { + 'source_tmpl': 'Text-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Devel::CheckCompiler', '0.07', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Log::Handler', '0.88', { + 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Devel::StackTrace', '2.02', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Term::ReadKey', '2.14', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KJ/KJALB'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Moose', '2.2004', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Font::TTF', '1.06', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('SQL::Statement', '1.410', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('CPANPLUS', '0.9164', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Lingua::EN::PluralToSingular', '0.19', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), + ('Mail::Util', '2.18', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Text::Template', '1.47', { + 'source_tmpl': 'Text-Template-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + }), + ('PDF::API2', '2.031', { + 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb new file mode 100644 index 0000000000..90175fa060 --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -0,0 +1,34 @@ +name = 'Trinity' +version = '2.4.0' +java = 'Java' +javaver = '1.8.0_121' + +homepage = 'http://trinityrnaseq.github.io' +description = """Trinity represents a novel method for the efficient and robust de novo reconstruction + of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, + Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'optarch': True} + +source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] +sources = ['%(name)s-v%(version)s.tar.gz'] + +patches = [ + 'chrysalis_commandline_noconsts_2012-10-05.patch', +] + +builddependencies = [ + ('Autotools', '20150215', '', ('GCCcore', '6.3.0')), +] + +dependencies = [ + (java, javaver, '', True), + ('ant', '1.10.1', '-%s-%s' % (java, javaver), True), + ('Bowtie', '1.1.2'), + ('Bowtie2', '2.3.2'), + ('ncurses', '6.0'), + ('zlib', '1.2.11'), + ('Perl', '5.24.1'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..34c5460e40 --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb @@ -0,0 +1,17 @@ +name = 'tbb' +version = '2017_U6' + +homepage = 'https://01.org/tbb/' +description = """Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that + take full advantage of multicore performance, that are portable, composable and have future-proof scalability.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['https://github.com/01org/tbb/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [ + ('binutils', '2.27') +] + +moduleclass = 'lib' -- GitLab From e15e7694acac56eb321dabd5de7158e4eff98f9a Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 3 Aug 2017 15:20:42 -0500 Subject: [PATCH 285/845] adding easyconfigs: sparsehash-2.0.3-GCCcore-6.4.0.eb --- .../sparsehash-2.0.3-GCCcore-6.4.0.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..affa39b4de --- /dev/null +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'sparsehash' +version = '2.0.3' + +homepage = 'https://code.google.com/p/sparsehash/' + +description = """ + An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! + The SparseHash library contains several hash-map implementations, including + implementations that optimize for space or speed. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/sparsehash/sparsehash/archive'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['05e986a5c7327796dad742182b2d10805a8d4f511ad090da0490f146c1ff7a8c'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/google/type_traits.h'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 11119dba02d9b77580f4d19a75846fd06eb8d506 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 4 Aug 2017 06:36:40 +0000 Subject: [PATCH 286/845] BamM erratum and deps --- .../a/Autoconf/Autoconf-2.62-foss-2016b.eb | 37 +++++++++++++++ .../a/Autoconf/Autoconf-2.68-foss-2016b.eb | 37 +++++++++++++++ .../a/Automake/Automake-1.11.3-foss-2016b.eb | 36 +++++++++++++++ .../a/Automake/Automake-1.11.6-foss-2016b.eb | 36 +++++++++++++++ .../b/BWA/BWA-0.7.12-foss-2016b.eb | 35 +++++++++++++++ .../BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 14 +++--- .../s/SAMtools/SAMtools-1.2-foss-2016b.eb | 34 ++++++++++++++ .../t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb | 45 +++++++++++++++++++ 8 files changed, 268 insertions(+), 6 deletions(-) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb create mode 100644 easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb create mode 100644 easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb new file mode 100644 index 0000000000..e9f3329ee6 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb @@ -0,0 +1,37 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: +# +# Notes:: +## + +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.62' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb new file mode 100644 index 0000000000..5e317e5ad2 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb @@ -0,0 +1,37 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: +# +# Notes:: +## + +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.68' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb new file mode 100644 index 0000000000..ce98c370d2 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +# +# Modified:: Robert Qiao +# @ adelaide.edu.au/phoenix +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.11.3" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.68')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb new file mode 100644 index 0000000000..3ea4446d37 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +# +# Modified:: Robert Qiao +# @ adelaide.edu.au/phoenix +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.11.6" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.62')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb new file mode 100644 index 0000000000..e4305c6932 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.13 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +# +# Modified by: Robert Qiao +# @ adelaide.edu.au/phoenix +## + +name = 'BWA' +version = '0.7.12' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/lh3/%(name)s/archive/'] +sources = ['%(version)s.tar.gz'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index 0e28fe9620..1badadd105 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -24,17 +24,19 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/Ecogenomics/BamM/archive'] sources = ['%(version)s.tar.gz'] -checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', 'sha256'] +checksums = [ + '1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', +] builddependencies = [ - ('libtool', '2.4.6'), - ('Automake', '1.15'), + ('Automake', '1.11.3'), + ('texinfo', '6.4', '', ('GCCcore','5.4.0')), ] dependencies = [ - ('Python', '2.7.13'), - ('SAMtools', '1.3.1'), - ('BWA', '0.7.15'), + ('Python', '2.7.12'), + ('SAMtools', '1.2'), + ('BWA', '0.7.12'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb new file mode 100644 index 0000000000..56960c20c6 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# +# Modified:: Robert Qiao +# @ adelaide.edu.au/phoenix +## + +name = 'SAMtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb b/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb new file mode 100644 index 0000000000..35739f65d5 --- /dev/null +++ b/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb @@ -0,0 +1,45 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: +# +# Notes:: +## + +easyblock = 'ConfigureMake' + +name = 'texinfo' +version = '6.4' + +homepage = 'https://www.gnu.org/software/texinfo/' +description = """Texinfo is the official documentation format of the GNU project.""" + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +osdependencies = ['texlive'] + +preinstallopts = "make TEXMF=%(installdir)s/texmf install-tex && " + +# This will overwrite a users $TEXMFHOME so this module is best used as a build dependency +modextravars = {'TEXMFHOME': '%(installdir)s/texmf'} +modloadmsg = "\n\nWARNING: This texinfo module has (re)defined the value for the environment variable $TEXMFHOME.\n" +modloadmsg += "If you use a custom texmf directory (such as ~/texmf) you should copy files found in the\n" +modloadmsg += "new $TEXMFHOME to your custom directory and reset the value of $TEXMFHOME to point to that space:\n" +modloadmsg += "\tcp -r $TEXMFHOME/* /path/to/your/texmf\n" +modloadmsg += "\texport TEXMFHOME=/path/to/your/texmf\n\n" + +sanity_check_paths = { + 'files': [ + 'texmf/tex/texinfo/texinfo.tex', + 'bin/install-info', 'bin/makeinfo', 'bin/pdftexi2dvi', 'bin/pod2texi', 'bin/texi2pdf' + ], + 'dirs': ['bin', 'share', 'texmf'], +} + +moduleclass = 'devel' -- GitLab From 39bfe187e40a12b1d5d2f6cb14c616c512c411ab Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 4 Aug 2017 08:16:57 +0000 Subject: [PATCH 287/845] libunistring-0.9.7-GCCcore-6.4.0.eb restored --- .../libunistring-0.9.7-GCCcore-6.4.0.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..8d845c9877 --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.7' + +homepage = 'http://www.gnu.org/software/libunistring/' + +description = """ + This library provides functions for manipulating Unicode strings and for + manipulating C strings according to the Unicode standard. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] +checksums = ['2e3764512aaf2ce598af5a38818c0ea23dedf1ff5460070d1b6cee5c3336e797'] + +builddependencies = [ + ('binutils', '2.28'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], +} + +moduleclass = 'lib' -- GitLab From 8df4310bfe0eb6b811c0b194f31da99ff52a8252 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 4 Aug 2017 08:19:31 +0000 Subject: [PATCH 288/845] util-linux-2.30-GCCcore-6.4.0.eb restored --- .../util-linux-2.30-GCCcore-6.4.0.eb | 42 +++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3556edda8d --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.30' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' + +description = "Set of Linux utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e84cc32566abf28b84efb5ee326e1f3597c3d19b9916740f50c75bd57e498ce0'] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From 063c7e7cbe169a93b54864cceca377342416bca1 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Fri, 4 Aug 2017 08:29:21 +0000 Subject: [PATCH 289/845] BamM style erratum --- .../easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index 1badadd105..f16e116a9d 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -30,7 +30,7 @@ checksums = [ builddependencies = [ ('Automake', '1.11.3'), - ('texinfo', '6.4', '', ('GCCcore','5.4.0')), + ('texinfo', '6.4', '', ('GCCcore', '5.4.0')), ] dependencies = [ -- GitLab From fd668ccbdfb333024df931f65aa141c832a501b8 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 4 Aug 2017 11:46:38 +0200 Subject: [PATCH 290/845] Checksums added --- .../b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb | 1 + .../b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb | 1 + .../p/Perl/Perl-5.24.1-foss-2017a.eb | 223 ++++++++++++++++++ .../t/Trinity/Trinity-2.4.0-foss-2017a.eb | 1 + .../t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb | 1 + 5 files changed, 227 insertions(+) diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb index a46b5265d0..ffaca077d2 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb @@ -14,5 +14,6 @@ toolchainopts = {'pic': True} sources = ['%(namelower)s-%(version)s-src.zip'] source_urls = ['http://download.sourceforge.net/bowtie-bio/'] +checksums = ['b1e9ccc825207efd1893d9e33244c681bcb89b9b2b811eb95a9f5a92eab637ae'] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb index 9d4236c5ff..0222eced42 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb @@ -23,6 +23,7 @@ toolchainopts = {'pic': True, 'cstd': 'gnu++98'} sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] +checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] dependencies = [('tbb', '2017_U6')] diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb index c45b3b6b14..82a8efae48 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb @@ -9,6 +9,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['e6c185c9b09bdb3f1b13f678999050c639859a7ef39c8cad418448075f5918af'] # !! order of extensions is important !! # extensions updated on April 4th 2017 @@ -16,891 +17,1113 @@ exts_list = [ ('Config::General', '2.63', { 'source_tmpl': 'Config-General-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], }), ('File::Listing', '6.04', { 'source_tmpl': 'File-Listing-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5'], }), ('ExtUtils::InstallPaths', '0.011', { 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c'], }), ('ExtUtils::Helpers', '0.026', { 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416'], }), ('Test::Harness', '3.38', { 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['af906dd279217a6db5064a058658f2b1d5aa1d307ed6f142d96ac4d339754c01'], }), ('ExtUtils::Config', '0.008', { 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c'], }), ('Module::Build::Tiny', '0.039', { 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c'], }), ('aliased', '0.34', { 'source_tmpl': 'aliased-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb'], }), ('Text::Glob', '0.11', { 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287'], }), ('Regexp::Common', '2016060801', { 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': ['fc2fc178facf0292974d6511bad677dd038fe60d7ac118e3b83a1ca9e98a8403'], }), ('GO::Utils', '0.15', { 'source_tmpl': 'go-perl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': ['423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12'], }), ('Module::Pluggable', '5.2', { 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': ['b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df'], }), ('Test::Fatal', '0.014', { 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0'], }), ('Test::Warnings', '0.026', { 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08'], }), ('File::ShareDir::Install', '0.11', { 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8'], }), ('DateTime::Locale', '1.16', { 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe'], }), ('DateTime::TimeZone', '2.11', { 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['a7c0b2581d2bf6d5cc535364099a67678a9f6ee608e5042dff9ef9c4c577ea6b'], }), ('Test::Requires', '0.10', { 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': ['2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5'], }), ('Module::Implementation', '0.09', { 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d'], }), ('Module::Build', '0.4222', { 'source_tmpl': 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['85b94f3513093ec0a25b91f9f2571918519ae6f2b7a1e8546f8f78d09a877143'], }), ('HTTP::Date', '6.02', { 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['e8b9941da0f9f0c9c01068401a5e81341f0e3707d1c754f8e11f42a7e629e333'], }), ('Authen::SASL', '2.16', { 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': ['6614fa7518f094f853741b63c73f3627168c5d3aca89b1d02b1016dc32854e09'], }), ('Clone', '0.38', { 'source_tmpl': 'Clone-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + 'checksums': ['9fb0534bb7ef6ca1f6cc1dc3f29750d6d424394d14c40efdc77832fad3cebde8'], }), ('Data::Types', '0.09', { 'source_tmpl': 'Data-Types-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + 'checksums': ['b2296fdcf9addc8e8fc39e15eb2c3d81145f6355258438bc783b12b02c41cb81'], }), ('Import::Into', '1.002005', { 'source_tmpl': 'Import-Into-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': ['bd9e77a3fb662b40b43b18d3280cd352edf9fad8d94283e518181cc1ce9f0567'], }), ('DateTime::Tiny', '1.06', { 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': ['bd725df481d7223ee787e154c116098b08a129f55e0763194b07ebea3dda33ec'], }), ('DBD::AnyData', '0.110', { 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['247f0d88e55076fd3f6c7bf3fd527989d62fcc1ef9bde9bf2ee11c280adcaeab'], }), ('Text::Format', '0.60', { 'source_tmpl': 'Text-Format-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': ['664f313570604624ff9e1fc9b26b6d04e06897b3e4eac83089fc0905a692a2b8'], }), ('Devel::CheckCompiler', '0.07', { 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + 'checksums': ['768b7697b4b8d4d372c7507b65e9dd26aa4223f7100183bbb4d3af46d43869b5'], }), ('Log::Handler', '0.88', { 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + 'checksums': ['45bf540ab2138ed3ff93afc205b0516dc75755b86acdcc5e75c41347833c293d'], }), ('DBIx::ContextualFetch', '1.03', { 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': ['85e2f805bfc81cd738c294316b27a515397036f397a0ff1c6c8d754c38530306'], }), ('Devel::StackTrace', '2.02', { 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['cbbd96db0ecf194ed140198090eaea0e327d9a378a4aa15f9a34b3138a91931f'], }), ('Term::ReadKey', '2.14', { 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KJ/KJALB'], + 'checksums': ['6009158cd9889f8c00da78af99847ace5052f1ca04fa30eb3411fdc26d54c9a8'], }), ('Set::IntSpan', '1.19', { 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + 'checksums': ['11b7549b13ec5d87cc695dd4c777cd02983dd5fe9866012877fb530f48b3dfd0'], }), ('Moose', '2.2004', { 'source_tmpl': 'Moose-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['e4c881bf8d8fd5821aea8a8c7c57ed850c2373d4800949798a55c06ca9e8d2b0'], }), ('Algorithm::Dependency', '1.110', { 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': ['f27733e8d89cf2ab621284c2584da90ab0cb743ba2295ee739fe51bf92561e37'], }), ('Font::TTF', '1.06', { 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': ['4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293'], }), ('IPC::Run3', '0.048', { 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565'], }), ('File::Find::Rule', '0.34', { 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe'], }), ('SQL::Statement', '1.410', { 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['7367fcda896367c96d98416cad423c9f98adb7e04b793c5c7deb3052a1213182'], }), ('File::Slurp', '9999.19', { 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': ['ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643'], }), ('Package::Stash', '0.37', { 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': ['06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c'], }), ('Data::OptList', '0.110', { 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3'], }), ('CPANPLUS', '0.9164', { 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['3fcd8c7bb1973df484236fc3d59ed17c8a35057f56546ba44bfc780b97fec0a8'], }), ('IO::Tty', '1.12', { 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': ['a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d'], }), ('Text::Soundex', '3.05', { 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed'], }), ('Lingua::EN::PluralToSingular', '0.19', { 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': ['c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e'], }), ('Want', '0.29', { 'source_tmpl': 'Want-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': ['b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7'], }), ('Cwd::Guard', '0.05', { 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': ['7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77'], }), ('Bundle::BioPerl', '2.1.9', { 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': ['c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7'], }), ('Mail::Util', '2.18', { 'source_tmpl': 'MailTools-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': ['dfee9e770257371112f20d978e637759e81bc4f19e97b083585c71ecab37b527'], }), ('Text::Template', '1.47', { 'source_tmpl': 'Text-Template-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': ['50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc'], }), ('PDF::API2', '2.031', { 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': ['6ea5d38f99dfb1e8acf57c9c7579659b3eee84944295a135f90e607e0a3f43e9'], }), ('Devel::CheckLib', '1.11', { 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': ['bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1'], }), ('SVG', '2.77', { 'source_tmpl': 'SVG-2.77.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + 'checksums': ['1f01cf2dc666a2ba3bf5219ec9e2290143e5e569747431412c8423916a9846c5'], }), ('Statistics::Basic', '1.6611', { 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + 'checksums': ['6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb'], }), ] diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb index 90175fa060..167f098cd2 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -12,6 +12,7 @@ toolchainopts = {'optarch': True} source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] sources = ['%(name)s-v%(version)s.tar.gz'] +checksums = ['2e91ed242923205b060164398aa325e5fe824040732d86c74ece4f98d7a6f220'] patches = [ 'chrysalis_commandline_noconsts_2012-10-05.patch', diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb index 34c5460e40..1b8ceddb15 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb @@ -9,6 +9,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = ['https://github.com/01org/tbb/archive/'] sources = ['%(version)s.tar.gz'] +checksums = ['1f7df7af6045179a45eba9b5dfde74d185ee7f573328f103c137696f81e4ae5a'] builddependencies = [ ('binutils', '2.27') -- GitLab From 22350337eb4eb73d2bafce5d2abd9108507f8305 Mon Sep 17 00:00:00 2001 From: frenchwr Date: Fri, 4 Aug 2017 09:19:44 -0500 Subject: [PATCH 291/845] fix additional typos in comments --- .../Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb index 7e7221e7b3..b3cde73978 100644 --- a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb @@ -23,11 +23,11 @@ sanity_check_paths = { } # next steps after installation -# INSTALATION_PATH=your_instalation_path -# chown root:root $INSTALATION_PATH/Singularity/*/etc/singularity/singularity.conf -# chown root:root $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid -# chown root:root $INSTALATION_PATH/Singularity/*/var/singularity/mnt/container -# chmod 4755 $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid -# chmod +s $INSTALATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# INSTALLATION_PATH=your_installation_path +# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/singularity.conf +# chown root:root $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# chown root:root $INSTALLATION_PATH/Singularity/*/var/singularity/mnt/container +# chmod 4755 $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# chmod +s $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid moduleclass = 'tools' -- GitLab From 90b9071e2d237db34221573e104e8847b8029bac Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Sat, 5 Aug 2017 06:24:11 -0500 Subject: [PATCH 292/845] adding easyconfigs: htop-2.0.1.eb --- easybuild/easyconfigs/h/htop/htop-2.0.1.eb | 29 ++++++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/h/htop/htop-2.0.1.eb diff --git a/easybuild/easyconfigs/h/htop/htop-2.0.1.eb b/easybuild/easyconfigs/h/htop/htop-2.0.1.eb new file mode 100644 index 0000000000..c7e830f3a7 --- /dev/null +++ b/easybuild/easyconfigs/h/htop/htop-2.0.1.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'htop' +version = "2.0.1" + +homepage = 'http://hisham.hm/htop/' + +description = """An interactive process viewer for Unix""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://hisham.hm/htop/releases/%(version)s/'] +sources = [SOURCE_TAR_GZ] +checksums = ['f410626dfaf6b70fdf73cd7bb33cae768869707028d847fed94a978e974f5666'] + +dependencies = [ + ('ncurses', '6.0'), +] + +prebuildopts = """ + sed -e 's/^LIBS = -lncursesw -lm/LIBS = -lncursesw -lm -ltinfo/' -i.eb Makefile +""" + +sanity_check_paths = { + 'files': ['bin/htop'], + 'dirs': ['share'], +} + +moduleclass = 'tools' -- GitLab From 1c5255de37fc32764fdc3747f3fefcaf52d6692f Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Sun, 6 Aug 2017 08:07:00 +0100 Subject: [PATCH 293/845] Fix inline functions --- .../b/BFAST/BFAST-0.7.0a-foss-2016b.eb | 42 +++++++++++++++++++ .../b/BFAST/BFAST-0.7.0a-inline.patch | 28 +++++++++++++ 2 files changed, 70 insertions(+) create mode 100755 easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb create mode 100755 easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb new file mode 100755 index 0000000000..2126725d43 --- /dev/null +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## +# Modified for foss/2016b by Adam Huffman, Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'BFAST' +version = '0.7.0a' + +homepage = 'http://bfast.sourceforge.net/' +description = """BFAST facilitates the fast and accurate mapping of short reads to reference sequences. + Some advantages of BFAST include: + 1) Speed: enables billions of short reads to be mapped quickly. + 2) Accuracy: A priori probabilities for mapping reads with defined set of variants. + 3) An easy way to measurably tune accuracy at the expense of speed.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +verdir = ''.join(char for char in version if not char.isalpha()) +source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % verdir, 'download'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e'] + +dependencies = [('bzip2', '1.0.6')] + +patches = ['BFAST-0.7.0a-inline.patch'] + +sanity_check_paths = { + 'files': ["bin/bfast"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch new file mode 100755 index 0000000000..c936129c8c --- /dev/null +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch @@ -0,0 +1,28 @@ +# mismatch in function declaration, taken from +# http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/install/bfast.htm +diff -ur bfast-0.7.0a/bfast/BLib.h bfast-0.7.0a.new/bfast/BLib.h +--- bfast-0.7.0a/bfast/BLib.h 2011-09-03 19:44:58.000000000 +0100 ++++ bfast-0.7.0a.new/bfast/BLib.h 2017-08-06 07:56:35.943546000 +0100 +@@ -16,7 +16,7 @@ + int ParseFastaHeaderLine(char*); + char ToLower(char); + void ToLowerRead(char*, int); +-inline char ToUpper(char); ++char ToUpper(char); + void ToUpperRead(char*, int); + void ReverseRead(char*, char*, int); + void ReverseReadFourBit(int8_t*, int8_t*, int); +diff -ur bfast-0.7.0a/bfast/ScoringMatrix.h bfast-0.7.0a.new/bfast/ScoringMatrix.h +--- bfast-0.7.0a/bfast/ScoringMatrix.h 2011-09-03 19:44:59.000000000 +0100 ++++ bfast-0.7.0a.new/bfast/ScoringMatrix.h 2017-08-06 07:56:49.351357000 +0100 +@@ -3,8 +3,8 @@ + + #include "BLibDefinitions.h" + +-inline int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*); +-inline int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*); ++int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*); ++int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*); + + int ScoringMatrixRead(char*, ScoringMatrix*, int); + void ScoringMatrixInitialize(ScoringMatrix*); -- GitLab From de2861a5f8a80113e9d6156936b200178d347c72 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 6 Aug 2017 15:09:55 +0200 Subject: [PATCH 294/845] add checksum for Seurat sources --- .../easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb index 47751ee440..60c2927733 100644 --- a/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb @@ -14,6 +14,7 @@ sources = [{ 'filename': SOURCE_TAR_GZ, 'download_filename': '3bd092a.tar.gz', }] +checksums = ['2079b09698aadc1f3fdd3de5ac708add7196f4713d9f6a01b85d05b3a6ba2ec5'] dependencies = [('R', '3.4.0', '-X11-20170314')] -- GitLab From f8a8ee43919df30083788376ccebbd1a2c1ebd77 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 10:44:20 +0200 Subject: [PATCH 295/845] adding easyconfigs: XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb --- .../XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..c34999e2b6 --- /dev/null +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'XGBoost' +version = '0.6a2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/dmlc/xgboost' +description = """XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, + flexible and portable.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Python', '3.6.1')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' -- GitLab From 78a47cf1ddc2c495c683f1121785f0b316feb269 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 11:02:03 +0200 Subject: [PATCH 296/845] add SHA256 checksum in XGBoost easyconfigs --- .../x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb | 1 + .../x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb | 1 + .../x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb | 1 + 3 files changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb index 4359ea417d..da4a0e2bda 100644 --- a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebc4e2bf8c8266212e342ff8ec4f6ae469e8c41a05d099b6778de8424ce32563'] dependencies = [('Python', '2.7.12')] diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb index f4be4224b1..a979a43a6f 100644 --- a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebc4e2bf8c8266212e342ff8ec4f6ae469e8c41a05d099b6778de8424ce32563'] dependencies = [('Python', '3.5.2')] diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb index c34999e2b6..6269db2cd4 100644 --- a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebc4e2bf8c8266212e342ff8ec4f6ae469e8c41a05d099b6778de8424ce32563'] dependencies = [('Python', '3.6.1')] -- GitLab From 2f5e440be70dcbe0a3b3e075ef349e36a0da7397 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 11:39:44 +0200 Subject: [PATCH 297/845] adding easyconfigs: I-TASSER-5.1.eb --- .../easyconfigs/i/I-TASSER/I-TASSER-5.1.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb diff --git a/easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb b/easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb new file mode 100644 index 0000000000..f505003e03 --- /dev/null +++ b/easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb @@ -0,0 +1,31 @@ +easyblock = 'PackedBinary' + +name = 'I-TASSER' +version = '5.1' + +homepage = 'http://zhanglab.ccmb.med.umich.edu/I-TASSER/' +description = """I-TASSER is a set of pre-compiled binaries and scripts for protein structure and function +modelling and comparison.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# Can't download from the web site automatically as registration is required. +# The source code may be downloaded manually from http://zhanglab.ccmb.med.umich.edu. +sources = ['%(name)s%(version)s.tar.bz2'] +checksums = ['c127f4932c11bb3f8940ad8510a3429b8e7dc14595cfee230af7cc52196a5396'] + +dependencies = [ + ('BLAST', '2.2.26', '-Linux_x86_64'), + ('Java', '1.7.0_80'), +] + +sanity_check_paths = { + 'files': ['I-TASSERmod/runI-TASSER.pl'], + 'dirs': ['bin', 'blast', 'COACH', 'COFACTOR', 'I-TASSERmod', 'PSSpred'], +} + +# You may find it desirable to put this variable in the module file. +# The command to do so has been put here (commented out) as a convenience. +# modextravars = {'IMINTASSERDB': '/path/to/databases/I-TASSER/%(version)s'} + +moduleclass = 'bio' -- GitLab From 46a05e3b80361c673890e5162088885e514c2223 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 12:08:55 +0200 Subject: [PATCH 298/845] adding easyconfigs: rjags-4-6-intel-2017a-R-3.4.0.eb, JAGS-4.2.0-intel-2017a.eb --- .../j/JAGS/JAGS-4.2.0-intel-2017a.eb | 32 +++++++++++++++++++ .../r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb | 28 ++++++++++++++++ 2 files changed, 60 insertions(+) create mode 100644 easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb new file mode 100644 index 0000000000..6b1311fff0 --- /dev/null +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'JAGS' +version = '4.2.0' + +homepage = 'http://mcmc-jags.sourceforge.net/' +description = """JAGS is Just Another Gibbs Sampler. It is a program for analysis + of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [('http://sourceforge.net/projects/mcmc-jags/files/JAGS/%(version_major)s.x/Source/', 'download')] +sources = [SOURCE_TAR_GZ] + +configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' + +sanity_check_paths = { + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.%s" % SHLIB_EXT], + 'dirs': [] +} + +modextrapaths = { + 'JAGS_INCLUDE': 'include/JAGS', + 'JAGS_LIB': 'lib', +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000..7a91a922a5 --- /dev/null +++ b/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'RPackage' + +name = 'rjags' +version = '4-6' +versionsuffix = '-R-%(rver)s' + +homepage = 'http://cran.r-project.org/web/packages/rjags' +description = """The rjags package is an interface to the JAGS library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/rjags/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('JAGS', '4.2.0'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['rjags'], +} + +moduleclass = 'math' -- GitLab From 725d2ded96d5dbd5e3314c2b0f4d897691c16b89 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 13:19:48 +0200 Subject: [PATCH 299/845] adding easyconfigs: Biopython-1.70-intel-2017a-Python-3.6.1.eb --- ...Biopython-1.70-intel-2017a-Python-3.6.1.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..a9ed1da426 --- /dev/null +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , Thekla Loizou , +# George Tsouloupas +# License:: MIT/GPL +# +## +easyblock = 'PythonPackage' + +name = 'Biopython' +version = '1.70' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.biopython.org' +description = """Biopython is a set of freely available tools for biological computation written +in Python by an international team of developers. It is a distributed collaborative effort to +develop Python libraries and applications which address the needs of current and future work in +bioinformatics. """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://biopython.org/DIST'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '3.6.1') +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] +} + +options = {'modulename': 'Bio'} + +moduleclass = 'bio' -- GitLab From 0adb0dc158fc71ae4a5be0f8c95b8be8751ef494 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 15:18:40 +0200 Subject: [PATCH 300/845] rename CLISP patch + add upstream ref + minor style cleanups in easyconfig --- .../c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb | 14 ++++---------- ...readline.lisp => CLISP-2.49_fix-readline.patch} | 2 ++ 2 files changed, 6 insertions(+), 10 deletions(-) rename easybuild/easyconfigs/c/CLISP/{patch-modules_readline_readline.lisp => CLISP-2.49_fix-readline.patch} (93%) diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb index 1f086b8886..b37bd540bf 100644 --- a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb @@ -14,12 +14,11 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -source_urls = ['ftp://ftp.gnu.org/pub/gnu/%(namelower)s/release/%(version)s'] +source_urls = [GNU_SOURCE + '/release/%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = ['8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890'] -# from: https://sourceforge.net/p/clisp/bugs/688/ -patches = ['patch-modules_readline_readline.lisp'] +patches = ['CLISP-%(version)s_fix-readline.patch'] builddependencies = [ ('binutils', '2.28'), @@ -34,13 +33,8 @@ dependencies = [ ('zlib', '1.2.11'), ] -prebuildopts = """ - cd src -""" - -preinstallopts = """ - cd src -""" +prebuildopts = "cd src && " +preinstallopts = prebuildopts parallel = 1 diff --git a/easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp b/easybuild/easyconfigs/c/CLISP/CLISP-2.49_fix-readline.patch similarity index 93% rename from easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp rename to easybuild/easyconfigs/c/CLISP/CLISP-2.49_fix-readline.patch index 19c54f96d6..44e4e73952 100644 --- a/easybuild/easyconfigs/c/CLISP/patch-modules_readline_readline.lisp +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49_fix-readline.patch @@ -1,3 +1,5 @@ +obtained from https://sourceforge.net/p/clisp/bugs/688/ + $NetBSD: patch-modules_readline_readline.lisp,v 1.1 2016/09/20 14:10:25 wiz Exp $ rl_readline_state changed from int to unsigned long in readline-7.0. -- GitLab From a3450c32904c16b0483628fdb0b531bb8ab8b638 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 15:57:22 +0200 Subject: [PATCH 301/845] adding easyconfigs: FDS-6.5.3-intel-2017a.eb --- .../f/FDS/FDS-6.5.3-intel-2017a.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb diff --git a/easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb b/easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb new file mode 100644 index 0000000000..00c8e74036 --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'FDS' +version = '6.5.3' + +homepage = 'https://pages.nist.gov/fds-smv/' +description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, + with an emphasis on smoke and heat transport from fires.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/firemodels/fds/archive/'] +sources = ['FDS%(version)s.tar.gz'] +checksums = ['e15173651512575967e3769f6730425e616a3deb0291475564db729cf526be13'] + +unpack_options = '--strip-components=1' + +start_dir = 'Build' + +# just run make in the install dir +skipsteps = ['configure', 'install'] +buildininstalldir = True + +target = 'impi_intel_linux_64' +buildopts = '%s FFLAGS="$FFLAGS -fpp" FCOMPL="$FC" obj=fds' % target + +modextrapaths = {'PATH': 'Build'} + +sanity_check_paths = { + 'files': ['Build/fds'], + 'dirs': [], +} + +sanity_check_commands = [("fds 2>&1 | grep 'MPI Enabled;'", '')] + +moduleclass = 'phys' -- GitLab From da954e9fe1afedcf9ed07401e7dae80de69d9bf8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 16:24:39 +0200 Subject: [PATCH 302/845] adding easyconfigs: Mathematica-11.1.1.eb --- .../m/Mathematica/Mathematica-11.1.1.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb new file mode 100644 index 0000000000..6bf4ec7171 --- /dev/null +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb @@ -0,0 +1,17 @@ +name = 'Mathematica' +version = '11.1.1' + +homepage = 'http://www.wolfram.com/mathematica' +description = """Mathematica is a computational software program used in many scientific, engineering, mathematical +and computing fields.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['Mathematica_%(version)s_LINUX.sh'] +checksums = ['80cb3a25337d809bf865e5405cf5975dccf1dcaa20874ee301c98d41011281ce'] + +license_server = 'license.example.com' + +sanity_check_commands = [('mathematica', '--version')] + +moduleclass = 'math' -- GitLab From 6de68f8401aca249aecb08b9676746e5a5bdca70 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 17:13:48 +0200 Subject: [PATCH 303/845] add checksum for Biopython 1.70 --- .../b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb index a9ed1da426..e9f9d1c3f3 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb @@ -23,6 +23,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://biopython.org/DIST'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b'] dependencies = [ ('Python', '3.6.1') -- GitLab From c82c602516a11e9bd356b4f2e7b05ac36352961d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 17:38:00 +0200 Subject: [PATCH 304/845] add checksum for CLISP patch --- easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb index b37bd540bf..e8a86bb97c 100644 --- a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb @@ -16,10 +16,15 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = [GNU_SOURCE + '/release/%(version)s'] sources = [SOURCELOWER_TAR_BZ2] -checksums = ['8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890'] patches = ['CLISP-%(version)s_fix-readline.patch'] +checksums = [ + '8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890', # clisp-2.49.tar.bz2 + '903ca7367721e5bfe216fd8151659c4d127739311fac61f812e0031faec100ea', # CLISP-2.49_fix-readline.patch +] + + builddependencies = [ ('binutils', '2.28'), ] -- GitLab From b01e6bd9091dbe6e941189b25346812e488c0a8c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 7 Aug 2017 17:42:19 +0200 Subject: [PATCH 305/845] add checksums for rjags and JAGS --- easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb | 1 + easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb | 1 + 2 files changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb index 6b1311fff0..946cc65fab 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb @@ -16,6 +16,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [('http://sourceforge.net/projects/mcmc-jags/files/JAGS/%(version_major)s.x/Source/', 'download')] sources = [SOURCE_TAR_GZ] +checksums = ['af3e9d2896d3e712f99e2a0c81091c6b08f096650af6aa9d0c631c0790409cf7'] configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' diff --git a/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb index 7a91a922a5..2809740b9c 100644 --- a/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://cran.r-project.org/src/contrib/Archive/rjags/', ] sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['cf24bb1e7c8445bafb49097089ad33e5bd5d8efbccf16fc7e32ad230f05f89ad'] dependencies = [ ('R', '3.4.0', '-X11-20170314'), -- GitLab From 354930bb6c724d6d8c42f8c51259d2e252c1d8f8 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Mon, 7 Aug 2017 23:07:23 +0100 Subject: [PATCH 306/845] Use slice for variable rather than hardcoding --- easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb index cfc64d5813..e2a6be01fd 100755 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb @@ -18,7 +18,7 @@ name = 'BWA' version = '0.7.16a' -subver = '0.7.16' +subver = version[:-1] homepage = 'http://bio-bwa.sourceforge.net/' description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb index c1ee916e24..742b3bab04 100755 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb @@ -18,7 +18,7 @@ name = 'BWA' version = '0.7.16a' -subver = '0.7.16' +subver = version[:-1] homepage = 'http://bio-bwa.sourceforge.net/' description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns -- GitLab From cdec53fa0ba852cfb0fd6cd14fe4a5a01d7940df Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 8 Aug 2017 09:43:00 +0200 Subject: [PATCH 307/845] Javaver fixed --- easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb index 167f098cd2..3b41093451 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -1,7 +1,5 @@ name = 'Trinity' version = '2.4.0' -java = 'Java' -javaver = '1.8.0_121' homepage = 'http://trinityrnaseq.github.io' description = """Trinity represents a novel method for the efficient and robust de novo reconstruction @@ -24,7 +22,7 @@ builddependencies = [ dependencies = [ (java, javaver, '', True), - ('ant', '1.10.1', '-%s-%s' % (java, javaver), True), + ('ant', '1.10.1', '-Java-%(javaver)s', True), ('Bowtie', '1.1.2'), ('Bowtie2', '2.3.2'), ('ncurses', '6.0'), -- GitLab From f1587543e394dabd680f276d384039a23f147ac0 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 8 Aug 2017 09:53:18 +0200 Subject: [PATCH 308/845] Javaver fixed --- easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb index 3b41093451..4bcd727913 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -21,7 +21,7 @@ builddependencies = [ ] dependencies = [ - (java, javaver, '', True), + (java, '1.8.0_121', '', True), ('ant', '1.10.1', '-Java-%(javaver)s', True), ('Bowtie', '1.1.2'), ('Bowtie2', '2.3.2'), -- GitLab From adf461f774c30062f14e2c396aa88091e1312354 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 8 Aug 2017 10:38:38 +0200 Subject: [PATCH 309/845] Java --- easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb index 4bcd727913..c700a10e06 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -21,7 +21,7 @@ builddependencies = [ ] dependencies = [ - (java, '1.8.0_121', '', True), + ('Java', '1.8.0_121', '', True), ('ant', '1.10.1', '-Java-%(javaver)s', True), ('Bowtie', '1.1.2'), ('Bowtie2', '2.3.2'), -- GitLab From 89f8a5dce9f556ac693ca4d71e57e161d380e1d9 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 8 Aug 2017 14:00:52 +0200 Subject: [PATCH 310/845] {chem}[dummy] ORCA 4.0.1 (REVIEW) --- .../o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb new file mode 100644 index 0000000000..1ad67b2230 --- /dev/null +++ b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb @@ -0,0 +1,37 @@ +easyblock = "PackedBinary" + +name = "ORCA" +version = '4.0.1' + +ompi_ver = '2.0.2' +versionsuffix = '-OpenMPI-%s' % ompi_ver + +homepage = 'http://cec.mpg.de/forum/' +description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry + with specific emphasis on spectroscopic properties of open-shell molecules. + It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- + and multireference correlated ab initio methods. + It can also treat environmental and relativistic effects.""" + +toolchain = {'name': 'dummy', 'version': ''} + +# Download from https://cec.mpg.de/orcadownload/index.php +sources = ['%%(namelower)s_%s_linux_x86-64_openmpi%s.tar.xz' % (version.replace('.', '_'), ompi_ver.replace('.', ''))] + +checksums = ['49f4e155a5425d9be2b1e90bf2fa7b61'] + +dependencies = [('OpenMPI', ompi_ver, '-GCC-6.3.0-2.27')] + +sanity_check_paths = { + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] for y in ['', '_mpi']] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca'], + 'dirs': [], +} + +moduleclass = 'chem' -- GitLab From 069e22ec09388be69e935942db08781fe8114c53 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Tue, 8 Aug 2017 12:38:43 +0000 Subject: [PATCH 311/845] checksum style fixed --- easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb | 2 +- easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb | 2 +- easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb index 8121c45137..3dedc086be 100644 --- a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb @@ -25,7 +25,7 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/macroevolution/bamm/archive'] sources = ['v%(version)s.tar.gz'] -checksums = ['526eef85ef011780ee21fe65cbc10ecc62efe54044102ae40bdef49c2985b4f4', 'sha256'] +checksums = ['526eef85ef011780ee21fe65cbc10ecc62efe54044102ae40bdef49c2985b4f4'] builddependencies = [ ('CMake', '3.7.2'), diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb index 50d340dd46..6f791c6734 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb @@ -23,6 +23,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] -checksums = ['fcf470a46a1dbe2f96a1c5b87c530554', 'md5'] +checksums = ['2f56afefa49acc9bf45f12edb58e412565086cc20be098b8bf15ec07de8c0515'] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb index 27f46a5ff7..50a94f1293 100644 --- a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/Blosc/c-blosc/archive/'] sources = ['v%(version)s.tar.gz'] -checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8', 'sha256'] +checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8'] builddependencies = [('CMake', '3.7.2')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb index c441b07fff..1490555ba3 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb @@ -21,7 +21,7 @@ description = "Portable lossless data compression library" sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage + 'download/'] -checksums = ['c0f892943208266f9b6543b3ae308fab6284c5c90e627931446fb49b4221a072', 'sha256'] +checksums = ['c0f892943208266f9b6543b3ae308fab6284c5c90e627931446fb49b4221a072'] toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True} -- GitLab From c02f91fc622ef3a89ecf46bd628390ced2ee74d6 Mon Sep 17 00:00:00 2001 From: Robert Qiao Date: Tue, 8 Aug 2017 12:44:18 +0000 Subject: [PATCH 312/845] Autoconf/Automake version cleanup --- .../a/Autoconf/Autoconf-2.62-foss-2016b.eb | 37 ------------------- .../a/Automake/Automake-1.11.6-foss-2016b.eb | 36 ------------------ 2 files changed, 73 deletions(-) delete mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb delete mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb deleted file mode 100644 index e9f3329ee6..0000000000 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.62-foss-2016b.eb +++ /dev/null @@ -1,37 +0,0 @@ -## -# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia -# Homepage: https://www.adelaide.edu.au/phoenix/ -# -# Copyright:: adelaide.edu.au/phoenix -# Authors:: Robert Qiao , Exe Escobedo -# License:: -# -# Notes:: -## - -easyblock = 'ConfigureMake' - -name = 'Autoconf' -version = '2.62' - -homepage = 'http://www.gnu.org/software/autoconf/' -description = """Autoconf is an extensible package of M4 macros that produce shell scripts - to automatically configure software source code packages. These scripts can adapt the - packages to many kinds of UNIX-like systems without manual user intervention. Autoconf - creates a configuration script for a package from a template file that lists the - operating system features that the package can use, in the form of M4 macro calls.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('M4', '1.4.17')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", - "autoupdate", "ifnames"]], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb deleted file mode 100644 index 3ea4446d37..0000000000 --- a/easybuild/easyconfigs/a/Automake/Automake-1.11.6-foss-2016b.eb +++ /dev/null @@ -1,36 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -# -# Modified:: Robert Qiao -# @ adelaide.edu.au/phoenix -## - -easyblock = 'ConfigureMake' - -name = 'Automake' -version = "1.11.6" - -homepage = 'http://www.gnu.org/software/automake/automake.html' -description = "Automake: GNU Standards-compliant Makefile generator" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('Autoconf', '2.62')] - -sanity_check_paths = { - 'files': ['bin/automake', 'bin/aclocal'], - 'dirs': [] -} - -moduleclass = 'devel' -- GitLab From a93ff0b4ad83d46f404a81522d02762f99e38f44 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 8 Aug 2017 18:17:17 +0200 Subject: [PATCH 313/845] adding easyconfigs: HDF5-1.10.1-foss-2017a.eb --- .../h/HDF5/HDF5-1.10.1-foss-2017a.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb new file mode 100644 index 0000000000..6701351463 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb @@ -0,0 +1,20 @@ +name = 'HDF5' +version = '1.10.1' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['43a2f9466702fb1db31df98ae6677f15'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1'), +] + +moduleclass = 'data' -- GitLab From 97df9bca46a1e6ea25f9b6871dd8b250a374ca59 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Tue, 8 Aug 2017 17:45:30 +0100 Subject: [PATCH 314/845] adding easyconfigs: minimap2-2.0rc1-foss-2016b.eb --- .../m/minimap2/minimap2-2.0rc1-foss-2016b.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100755 easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb diff --git a/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb b/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb new file mode 100755 index 0000000000..446f7da053 --- /dev/null +++ b/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Adam Huffman +# The Francis Crick Institute +# adam.huffman@crick.ac.uk + +easyblock = 'MakeCp' + +name = 'minimap2' +version = '2.0rc1' + +homepage = 'https://github.com/lh3/minimap2' +description = """Minimap2 is a fast sequence mapping and alignment program that can find overlaps between + long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed + alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to + ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited + test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace + BWA-MEM for long reads and contig alignment.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = ['%(name)s-%(version)s.tar.bz2'] +source_urls = ['https://github.com/lh3/%(name)s/releases/download/v%(version)s/'] +checksums = ['452a13d7e944da941b6f1996392890dbe4b7f4256954dd06c99ea69939446a5b'] + +files_to_copy = [(['%(name)s'], 'bin'), 'LICENSE.txt', 'NEWS.md', 'README.md', '%(name)s.1'] + +sanity_check_paths = { + 'files': ['bin/%(name)s'], + 'dirs': [] +} + +modextrapaths = {'MANPATH': ''} + +moduleclass = 'bio' -- GitLab From a1d8e577eecf7df5e448e2661b030bdb370f4227 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 8 Aug 2017 19:05:55 +0200 Subject: [PATCH 315/845] also add checksums to Perl 5.24.1 easyconfig using intel/2017a --- .../p/Perl/Perl-5.24.1-intel-2017a.eb | 223 ++++++++++++++++++ 1 file changed, 223 insertions(+) diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb index 4dc5dd9a5c..e827a0f69a 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb @@ -9,6 +9,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['e6c185c9b09bdb3f1b13f678999050c639859a7ef39c8cad418448075f5918af'] # !! order of extensions is important !! # extensions updated on April 4th 2017 @@ -16,891 +17,1113 @@ exts_list = [ ('Config::General', '2.63', { 'source_tmpl': 'Config-General-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], }), ('File::Listing', '6.04', { 'source_tmpl': 'File-Listing-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5'], }), ('ExtUtils::InstallPaths', '0.011', { 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c'], }), ('ExtUtils::Helpers', '0.026', { 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416'], }), ('Test::Harness', '3.38', { 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['af906dd279217a6db5064a058658f2b1d5aa1d307ed6f142d96ac4d339754c01'], }), ('ExtUtils::Config', '0.008', { 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c'], }), ('Module::Build::Tiny', '0.039', { 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c'], }), ('aliased', '0.34', { 'source_tmpl': 'aliased-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb'], }), ('Text::Glob', '0.11', { 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287'], }), ('Regexp::Common', '2016060801', { 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': ['fc2fc178facf0292974d6511bad677dd038fe60d7ac118e3b83a1ca9e98a8403'], }), ('GO::Utils', '0.15', { 'source_tmpl': 'go-perl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': ['423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12'], }), ('Module::Pluggable', '5.2', { 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': ['b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df'], }), ('Test::Fatal', '0.014', { 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0'], }), ('Test::Warnings', '0.026', { 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08'], }), ('File::ShareDir::Install', '0.11', { 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8'], }), ('DateTime::Locale', '1.16', { 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe'], }), ('DateTime::TimeZone', '2.11', { 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['a7c0b2581d2bf6d5cc535364099a67678a9f6ee608e5042dff9ef9c4c577ea6b'], }), ('Test::Requires', '0.10', { 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': ['2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5'], }), ('Module::Implementation', '0.09', { 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d'], }), ('Module::Build', '0.4222', { 'source_tmpl': 'Module-Build-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['e74b45d9a74736472b74830599cec0d1123f992760f9cd97104f94bee800b160'], }), ('Module::Runtime', '0.014', { 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + 'checksums': ['4c44fe0ea255a9fd00741ee545063f6692d2a28e7ef2fbaad1b24a92803362a4'], }), ('Try::Tiny', '0.28', { 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['f1d166be8aa19942c4504c9111dade7aacb981bc5b3a2a5c5f6019646db8c146'], }), ('Params::Validate', '1.26', { 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['821ac3cfa9715b94f60926faf316b9ff722785594b37036202371ad2303a72ed'], }), ('List::MoreUtils', '0.418', { 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['365651edea4e0c806576e4dcfc3dfb98bb4cbb343bc5c3e04cdc7b5b71ed4988'], }), ('Exporter::Tiny', '0.044', { 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + 'checksums': ['eda868cc2da094b685ceace4245b83de11f439feb98e0ec8246cfbb9109c88ab'], }), ('Class::Singleton', '1.5', { 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': ['38220d04f02e3a803193c2575a1644cce0b95ad4b95c19eb932b94e2647ef678'], }), ('DateTime', '1.42', { 'source_tmpl': 'DateTime-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['efa4badf07365d1b03ee5527fc79baaf7d8b449bf7baad13599f04177232416e'], }), ('File::Find::Rule::Perl', '1.15', { 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['9a48433f86e08ce18e03526e2982de52162eb909d19735460f07eefcaf463ea6'], }), ('Readonly', '2.05', { 'source_tmpl': 'Readonly-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + 'checksums': ['4b23542491af010d44a5c7c861244738acc74ababae6b8838d354dfb19462b5e'], }), ('Git', '0.41', { 'source_tmpl': 'Git-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + 'checksums': ['9d4de21612253a1d3252ff7657d7e832dcf3cc2a748a8c84f73de618a3a38239'], }), ('Tree::DAG_Node', '1.29', { 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': ['2d04eb011aa06cee633c367d1f322b8d937020fde5d5393fad6a26c93725c4a8'], }), ('Template', '2.26', { 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['e7e1cf36026f1ef96d8233e18a3fb39e1eafe9109edc639ecf25b20651cd76be'], }), ('FreezeThaw', '0.5001', { 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + 'checksums': ['3c5e08329106f9cee3ab444b81331c5935f83084a151d88505e7a465da540f41'], }), ('DBI', '1.636', { 'source_tmpl': 'DBI-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': ['8f7ddce97c04b4b7a000e65e5d05f679c964d62c8b02c94c1a7d815bb2dd676c'], }), ('DBD::SQLite', '1.54', { 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269'], }), ('Math::Bezier', '0.01', { 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['11a815fc45fdf0efabb1822ab77faad8b9eea162572c5f0940c8ed7d56e6b8b8'], }), ('Archive::Extract', '0.80', { 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['25cbc2d5626c14d39a0b5e4fe8383941e085c9a7e0aa873d86e81b6e709025f4'], }), ('DBIx::Simple', '1.35', { 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + 'checksums': ['445535b3dfab88140c7a0d2776b1e78f254dc7e9c81072d5a01afc95a5db499a'], }), ('Shell', '0.73', { 'source_tmpl': 'Shell-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + 'checksums': ['f7dbebf65261ed0e5abd0f57052b64d665a1a830bab4c8bbc220f235bd39caf5'], }), ('File::Spec', '3.62', { 'source_tmpl': 'PathTools-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['36350e12f58871437ba03391f80a506e447e3c6630cc37d0625bc25ff1c7b4d2'], }), ('Test::Simple', '1.302078', { 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': ['ab47f3a980ad9aedb78a731719a0487f02a7bc30c17b65457e6dfc3a89a04c15'], }), ('Set::Scalar', '1.29', { 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + 'checksums': ['a3dc1526f3dde72d3c64ea00007b86ce608cdcd93567cf6e6e42dc10fdc4511d'], }), ('IO::Stringy', '2.111', { 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': 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['3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565'], }), ('File::Find::Rule', '0.34', { 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe'], }), ('SQL::Statement', '1.410', { 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['7367fcda896367c96d98416cad423c9f98adb7e04b793c5c7deb3052a1213182'], }), ('File::Slurp', '9999.19', { 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': ['ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643'], }), ('Package::Stash', '0.37', { 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': 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('Lingua::EN::PluralToSingular', '0.19', { 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': ['c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e'], }), ('Want', '0.29', { 'source_tmpl': 'Want-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': ['b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7'], }), ('Cwd::Guard', '0.05', { 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': ['7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77'], }), ('Bundle::BioPerl', '2.1.9', { 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': ['c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7'], }), ('Mail::Util', '2.18', { 'source_tmpl': 'MailTools-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': ['dfee9e770257371112f20d978e637759e81bc4f19e97b083585c71ecab37b527'], }), ('Text::Template', '1.47', { 'source_tmpl': 'Text-Template-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': ['50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc'], }), ('PDF::API2', '2.031', { 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': ['6ea5d38f99dfb1e8acf57c9c7579659b3eee84944295a135f90e607e0a3f43e9'], }), ('Devel::CheckLib', '1.11', { 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': ['bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1'], }), ('SVG', '2.77', { 'source_tmpl': 'SVG-2.77.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + 'checksums': ['1f01cf2dc666a2ba3bf5219ec9e2290143e5e569747431412c8423916a9846c5'], }), ('Statistics::Basic', '1.6611', { 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + 'checksums': ['6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb'], }), ] -- GitLab From f5563b9e1225aee2a01c31a3ff508ee9556ecb63 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 09:18:20 +0200 Subject: [PATCH 316/845] remove easyconfig for hwloc 1.11.7 with GCC-6.4.0-2.28 toolchain, GCCcore 6.4.0 suffices --- .../h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb | 24 ------------------- 1 file changed, 24 deletions(-) delete mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb deleted file mode 100644 index b5be4b59bc..0000000000 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCC-6.4.0-2.28.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'hwloc' -version = '1.11.7' - -homepage = 'http://www.open-mpi.org/projects/hwloc/' -description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction -(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including -NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various -system attributes such as cache and memory information as well as the locality of I/O devices such as -network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering -information about modern computing hardware so as to exploit it accordingly and efficiently.""" - -toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} - -source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] -sources = [SOURCE_TAR_GZ] -checksums = ['ac16bed9cdd3c63bca1fe1ac3de522a1376b1487c4fc85b7b19592e28fd98e26'] - -dependencies = [('numactl', '2.0.11')] - -configopts = "--enable-libnuma=$EBROOTNUMACTL" - -moduleclass = 'system' -- GitLab From 55a2995bcebdc6e08ed8d42fd5aece88bc5c7994 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 09:18:36 +0200 Subject: [PATCH 317/845] fix @verdurin's remarks --- easybuild/easyconfigs/f/foss/foss-2017b.eb | 3 +-- .../easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb | 3 +++ 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/foss/foss-2017b.eb b/easybuild/easyconfigs/f/foss/foss-2017b.eb index 5ce20b722f..a0cf18555c 100644 --- a/easybuild/easyconfigs/f/foss/foss-2017b.eb +++ b/easybuild/easyconfigs/f/foss/foss-2017b.eb @@ -20,9 +20,8 @@ blassuff = '-LAPACK-3.7.0' comp_mpi_tc_name = 'gompi' comp_mpi_tc = (comp_mpi_tc_name, version) -# compiler toolchain depencies # we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions +# because of toolchain preparation functions # For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds dependencies = [ ('GCC', gccver), diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb index c55bade938..bef1256a37 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb @@ -20,6 +20,9 @@ configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +# to enable SLURM integration (site-specific) +# configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr' + # needed for --with-verbs osdependencies = [('libibverbs-dev', 'libibverbs-devel')] -- GitLab From e64985bc522c497005df71667ff3648f08f42a4b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 12:00:46 +0200 Subject: [PATCH 318/845] adding easyconfigs: xarray-0.9.6-intel-2017a-Python-2.7.13.eb --- .../xarray-0.9.6-intel-2017a-Python-2.7.13.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..d49636fa5c --- /dev/null +++ b/easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,25 @@ +easyblock = 'PythonPackage' + +name = 'xarray' +version = '0.9.6' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pydata/xarray' +description = """xarray (formerly xray) is an open source project and Python package that aims to bring + the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the + core pandas data structures.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f649a41d43b5a6c64bdcbd57e994932656b689f9593a86dd0be95778a2b47494'] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'data' -- GitLab From f669fbe3b50e4a1de9b7610c5913b49ed79204ae Mon Sep 17 00:00:00 2001 From: Maxime Boissonneault Date: Wed, 9 Aug 2017 13:03:43 +0000 Subject: [PATCH 319/845] added checksum --- .../a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb index ca56813122..ee8b4d3fb7 100644 --- a/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} sources = [SOURCELOWER_TAR_XZ] source_urls = ['http://sourceforge.net/projects/arma/files'] +checksums = ['a32da32a0ea420b8397a53e4b40ed279c1a5fc791dd492a2ced81ffb14ad0d1b'] dependencies = [ ('Boost', '1.63.0', versionsuffix), -- GitLab From 911cb575b323af0fb1e3df4402ccbe7e69075250 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Wed, 9 Aug 2017 15:23:32 +0200 Subject: [PATCH 320/845] HTSlib 1.4.1 for foss 2016a --- .../h/HTSlib/HTSlib-1.4.1-foss-2016a.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb new file mode 100644 index 0000000000..187d2f6581 --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# 1.4 modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.4.1' + +homepage = "http://www.htslib.org/" +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +# cURL added for S3 support +dependencies = [ + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.2'), + ('cURL', '7.49.1'), +] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 0764f855df4dc14a5d8a7cd467dbc04f825be99f Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Wed, 9 Aug 2017 15:44:43 +0200 Subject: [PATCH 321/845] GLM 0.9.7.6 using the intel 2016a toolchain. --- .../g/GLM/GLM-0.9.7.6-intel-2016a.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb diff --git a/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb b/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb new file mode 100644 index 0000000000..e43fd5aa94 --- /dev/null +++ b/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'CMakeMake' + +name = 'GLM' +version = '0.9.7.6' + +homepage = 'https://github.com/g-truc/glm' +description = """OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on + the OpenGL Shading Language (GLSL) specifications.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['https://github.com/g-truc/glm/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('CMake', '3.5.2')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['include/glm/', 'include/glm/gtc', 'include/glm/gtx'], +} + +moduleclass = 'lib' -- GitLab From e3b33c0fc35d2eb3b1c189bfecd1a32ded1c9921 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 15:50:13 +0200 Subject: [PATCH 322/845] adding easyconfigs: UNAFold-3.8-intel-2017a-Perl-5.24.1.eb --- .../UNAFold-3.8-intel-2017a-Perl-5.24.1.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb diff --git a/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000..1cc07a9de0 --- /dev/null +++ b/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'UNAFold' +version = '3.8' +versionsuffix = '-Perl-%(perlver)s' + +homepage='http://mfold.rna.albany.edu/?q=DINAMelt/software' +description = """The UNAFold package contains several programs for performing energy minimization and partition + function calculations on nucleic acid sequences.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +#patches = ["ictce_inf.patch"] +checksums = ['f9392621762a74b02eb026caceb69568ea65b0cf0891ba25a805da721a90a275'] + +dependencies = [ + ('gnuplot', '5.0.6'), + ('Perl', '5.24.1'), +] + +sanity_check_paths = { + 'files': ['bin/concentration', 'bin/ct-energy', 'bin/hybrid', 'bin/hybrid2-min.pl', 'bin/sbs'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From dd03b8c02555b7ec6542fc96944b3bd7e5e69767 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 9 Aug 2017 15:52:10 +0200 Subject: [PATCH 323/845] md5->sha256 --- easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb index 1ad67b2230..b28cb7f1c0 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb @@ -18,7 +18,7 @@ toolchain = {'name': 'dummy', 'version': ''} # Download from https://cec.mpg.de/orcadownload/index.php sources = ['%%(namelower)s_%s_linux_x86-64_openmpi%s.tar.xz' % (version.replace('.', '_'), ompi_ver.replace('.', ''))] -checksums = ['49f4e155a5425d9be2b1e90bf2fa7b61'] +checksums = ['6644b95fdb16e117b870fd9e5cea8b4f829f1547d5df4e87d52ef08e3f1ee310'] dependencies = [('OpenMPI', ompi_ver, '-GCC-6.3.0-2.27')] -- GitLab From 21ed5c9c1b985d640ea548781d2fd222e2f23043 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 17:00:56 +0200 Subject: [PATCH 324/845] fix style issues --- .../u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb index 1cc07a9de0..91df69c67f 100644 --- a/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb +++ b/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb @@ -4,14 +4,13 @@ name = 'UNAFold' version = '3.8' versionsuffix = '-Perl-%(perlver)s' -homepage='http://mfold.rna.albany.edu/?q=DINAMelt/software' +homepage = 'http://mfold.rna.albany.edu/?q=DINAMelt/software' description = """The UNAFold package contains several programs for performing energy minimization and partition function calculations on nucleic acid sequences.""" toolchain = {'name': 'intel', 'version': '2017a'} sources = [SOURCELOWER_TAR_GZ] -#patches = ["ictce_inf.patch"] checksums = ['f9392621762a74b02eb026caceb69568ea65b0cf0891ba25a805da721a90a275'] dependencies = [ -- GitLab From 0539726cd946ac65d4e9bf3c37f6fe381d362c5e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 20:17:59 +0200 Subject: [PATCH 325/845] add SHA256 checksums for foss/2017b components --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb | 2 +- easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb | 1 + .../easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb | 3 +-- .../easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb | 1 - ...ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb | 1 + 5 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb index eee27ec554..a21d63724d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gompi-2017b.eb @@ -10,7 +10,7 @@ toolchainopts = {'pic': True} source_urls = [homepage] sources = ['fftw-%(version)s-pl2.tar.gz'] -checksums = ['927e481edbb32575397eb3d62535a856'] +checksums = ['a5de35c5c824a78a058ca54278c706cdf3d4abba1c56b63531c2cb05f5d57da2'] runtest = 'check' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb index 7ff64c1745..45cfc68647 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-foss-2017b.eb @@ -11,6 +11,7 @@ toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] +checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'] # fix Make dependencies, so parallel build also works patches = ['HPL_parallel-make.patch'] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb index 521df8ded9..775fb405c3 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb @@ -12,8 +12,7 @@ toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +checksums = ['450c091235f891ee874a8651b179c30f57a1391ca5c4673354740ba65e527861'] sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb index bef1256a37..c10c8f486d 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb @@ -10,7 +10,6 @@ toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] sources = [SOURCELOWER_TAR_GZ] - checksums = ['afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'] dependencies = [('hwloc', '1.11.7')] diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb index 84d34e0f8a..e698beb591 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb @@ -10,6 +10,7 @@ toolchainopts = {'pic': True} source_urls = [homepage] sources = [SOURCELOWER_TGZ] +checksums = ['0c74aeae690fe5ee4db7926f49c5d0bb69ce09eea75beb915e00bba07530395c'] blaslib = 'OpenBLAS' blasver = '0.2.19' -- GitLab From 9df0f5a2642c08b44ce6cbf62202fc285e927df2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 9 Aug 2017 21:01:01 +0200 Subject: [PATCH 326/845] add zlib as depedency to recent util-linux easyconfigs --- .../easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb | 5 ++++- .../easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb | 5 ++++- .../u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb | 1 + 3 files changed, 9 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb index 27b08c5298..246ed0de3f 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb @@ -23,7 +23,10 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [('ncurses', '6.0')] +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), +] sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb index b5ac58a535..c4419d6080 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb @@ -23,7 +23,10 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [('ncurses', '6.0')] +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), +] sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb index 3556edda8d..64826e9aa5 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb @@ -32,6 +32,7 @@ builddependencies = [ dependencies = [ ('ncurses', '6.0'), + ('zlib', '1.2.11'), ] sanity_check_paths = { -- GitLab From a9d45090544d26746dd5e5a7f459d19dbd401906 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Thu, 10 Aug 2017 06:11:12 +0100 Subject: [PATCH 327/845] Fix manpage placement --- .../easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb b/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb index 446f7da053..0e029fec25 100755 --- a/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb +++ b/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb @@ -22,13 +22,11 @@ sources = ['%(name)s-%(version)s.tar.bz2'] source_urls = ['https://github.com/lh3/%(name)s/releases/download/v%(version)s/'] checksums = ['452a13d7e944da941b6f1996392890dbe4b7f4256954dd06c99ea69939446a5b'] -files_to_copy = [(['%(name)s'], 'bin'), 'LICENSE.txt', 'NEWS.md', 'README.md', '%(name)s.1'] +files_to_copy = [(['%(name)s'], 'bin'), 'LICENSE.txt', 'NEWS.md', 'README.md', (['%(name)s.1'], 'share/man/man1')] sanity_check_paths = { 'files': ['bin/%(name)s'], 'dirs': [] } -modextrapaths = {'MANPATH': ''} - moduleclass = 'bio' -- GitLab From 37398674ade437e0a7add592eeb9cb1c15ab1900 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Thu, 10 Aug 2017 06:20:28 +0100 Subject: [PATCH 328/845] Fix hardcoded version for patch --- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb index 2126725d43..aecff4c2cf 100755 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb @@ -32,7 +32,7 @@ checksums = ['ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e'] dependencies = [('bzip2', '1.0.6')] -patches = ['BFAST-0.7.0a-inline.patch'] +patches = ['BFAST-%(version)s-inline.patch'] sanity_check_paths = { 'files': ["bin/bfast"], -- GitLab From 21354990e4e6b4ca169b93d563091db4c6b2693e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 13:20:12 +0200 Subject: [PATCH 329/845] adding easyconfigs: netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb, netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb --- .../netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb | 35 +++++++++++++++++++ ...-python-1.2.9-intel-2017a-Python-2.7.13.eb | 23 ++++++++++++ 2 files changed, 58 insertions(+) create mode 100644 easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb create mode 100644 easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb new file mode 100644 index 0000000000..713953985c --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb @@ -0,0 +1,35 @@ +name = 'netCDF' +version = '4.4.1.1' +hdf5_ver = '1.10.1' +versionsuffix = '-HDF5-%s' % hdf5_ver + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['7f040a0542ed3f6d27f3002b074e509614e18d6c515b2005d1537fec01b24909'] + +dependencies = [ + ('HDF5', hdf5_ver), + ('cURL', '7.54.0'), + ('Szip', '2.1'), +] + +builddependencies = [ + ('CMake', '3.8.2'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..4f52ebe137 --- /dev/null +++ b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,23 @@ +name = 'netcdf4-python' +version = '1.2.9' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://unidata.github.io/netcdf4-python/' +description = """Python/numpy interface to netCDF.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf4-python/archive/'] +sources = ['v%(version)srel.tar.gz'] +checksums = ['bbb6d40d33f5fe8fbf211b5706ff4af9484a91a5ab50d9f6607858bd34c1d10c'] + +patches = ['netcdf4-python-1.1.8-avoid-diskless-test.patch'] + +dependencies = [ + ('Python', '2.7.13'), + ('netCDF', '4.4.1.1', '-HDF5-1.10.1'), + ('cURL', '7.54.0'), +] + +moduleclass = 'data' -- GitLab From 5453a56c6d90a1a4c156518f456915812d0b4b33 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 13:30:14 +0200 Subject: [PATCH 330/845] adding easyconfigs: HDF5-1.8.19-intel-2017a.eb --- .../h/HDF5/HDF5-1.8.19-intel-2017a.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb new file mode 100644 index 0000000000..a3a8e59731 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb @@ -0,0 +1,21 @@ +name = 'HDF5' +version = '1.8.19' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] + +sources = [SOURCELOWER_TAR_GZ] +checksums = ['a4335849f19fae88c264fd0df046bc321a78c536b2548fc508627a790564dc38'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1'), +] + +moduleclass = 'data' -- GitLab From 04bd562e08f6a7330a2d959010258bb85a2dd54c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 13:47:57 +0200 Subject: [PATCH 331/845] adding easyconfigs: Pysam-0.8.4-intel-2016b-Python-2.7.12.eb --- .../Pysam-0.8.4-intel-2016b-Python-2.7.12.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..76d42a604f --- /dev/null +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 0.9.1.4: +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'PythonPackage' + +name = 'Pysam' +version = '0.8.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pysam-developers/pysam' +description = """Pysam is a python module for reading and manipulating Samfiles. + It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +source_urls = ['https://github.com/pysam-developers/pysam/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['4acbfe4b15b1db2417094ea64836d416a66e368e6c0e3031b597509f21e8c021'] + +dependencies = [ + ('Python', '2.7.12'), + ('ncurses', '6.0'), + ('zlib', '1.2.8'), + ('cURL', '7.52.1'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' -- GitLab From 1d000e9562d0b02e7d8a045ae63870054a6892b9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 17:52:55 +0200 Subject: [PATCH 332/845] also fix URLs in PLINK-1.07-x86_64.eb --- easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb index 7f7c8b29a2..f2b5d4628b 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb @@ -3,13 +3,13 @@ easyblock = 'PackedBinary' name = 'PLINK' version = '1.07-x86_64' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/dist' description = 'plink-1.07-src: Whole-genome association analysis toolset' toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['%(namelower)s-%(version)s.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist'] checksums = ['fd0bafeda42151b20534e4f97b0d97df'] -- GitLab From 063ff68e3f102c4615441176dcd1edf058882a2b Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 10 Aug 2017 13:29:44 -0500 Subject: [PATCH 333/845] cleanup --- easybuild/easyconfigs/h/htop/htop-2.0.1.eb | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/h/htop/htop-2.0.1.eb b/easybuild/easyconfigs/h/htop/htop-2.0.1.eb index c7e830f3a7..8c6054d0f4 100644 --- a/easybuild/easyconfigs/h/htop/htop-2.0.1.eb +++ b/easybuild/easyconfigs/h/htop/htop-2.0.1.eb @@ -17,9 +17,7 @@ dependencies = [ ('ncurses', '6.0'), ] -prebuildopts = """ - sed -e 's/^LIBS = -lncursesw -lm/LIBS = -lncursesw -lm -ltinfo/' -i.eb Makefile -""" +preconfigopts = 'LIBS="$LIBS -ltinfo"' sanity_check_paths = { 'files': ['bin/htop'], -- GitLab From a37a797d1ed63a7aa476594905721ff09741053f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 22:49:19 +0200 Subject: [PATCH 334/845] add additional extensions for R 3.4.0 and Bioconductor 3.5 bundle --- .../R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb | 2 ++ .../easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 9 +++++++++ 2 files changed, 11 insertions(+) diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb index 9125415482..07b8eb5010 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb @@ -157,6 +157,8 @@ exts_list = [ ('RcppParallel', '4.3.20', ext_options), ('dada2', '1.4.0', bioconductor_options), ('LEA', '1.8.1', bioconductor_options), + ('scran', '1.4.5', bioconductor_options), + ('scater', '1.4.0', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 10a1470cb3..70f5a7c2e7 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -535,6 +535,15 @@ exts_list = [ ('sn', '1.5-0', ext_options), ('tclust', '1.2-7', ext_options), ('ranger', '0.8.0', ext_options), + ('hexbin', '1.27.1', ext_options), + ('crosstalk', '1.0.0', ext_options), + ('pryr', '0.1.2', ext_options), + ('moments', '0.14', ext_options), + ('forcats', '0.2.0', ext_options), + ('laeken', '0.4.6', ext_options), + ('VIM', '4.7.0', ext_options), + ('proxy', '0.4-17', ext_options), + ('smoother', '1.1', ext_options), ] moduleclass = 'lang' -- GitLab From 7b7b1cade8d5be8a93f3129e67a2130bef171f15 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 22:51:46 +0200 Subject: [PATCH 335/845] adding easyconfigs: SCnorm-0.99.7-intel-2017a-R-3.4.0.eb --- .../SCnorm-0.99.7-intel-2017a-R-3.4.0.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb diff --git a/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000..b7ba7c4828 --- /dev/null +++ b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'RPackage' + +name = 'SCnorm' +version = '0.99.7' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://bioconductor.org/packages/SCnorm' +description = "This package implements SCnorm — a method to normalize single-cell RNA-seq data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://bioconductor.org/packages/release/bioc/src/contrib/', + 'https://bioconductor.org/packages/devel/bioc/src/contrib/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('R-bundle-Bioconductor', '3.5', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'data' -- GitLab From 8e46bc68bfe866049dd2214cb1c44a8635fc26aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 22:53:44 +0200 Subject: [PATCH 336/845] adding easyconfigs: destiny-2.5.6-intel-2017a-R-3.4.0.eb --- .../destiny-2.5.6-intel-2017a-R-3.4.0.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb diff --git a/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000..6dc1fa57a7 --- /dev/null +++ b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'RPackage' + +name = 'destiny' +version = '2.5.6' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://bioconductor.org/packages/destiny' +description = "R packages to create and plot diffusion maps." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://bioconductor.org/packages/release/bioc/src/contrib/', + 'https://bioconductor.org/packages/devel/bioc/src/contrib/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('R-bundle-Bioconductor', '3.5', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'data' -- GitLab From a38c44f0e2a456b2eb06f29407dc748ba106f658 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 10 Aug 2017 22:54:10 +0200 Subject: [PATCH 337/845] adding easyconfigs: plotly-4.7.1-intel-2017a-R-3.4.0.eb --- .../plotly-4.7.1-intel-2017a-R-3.4.0.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb diff --git a/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000..c2e0909198 --- /dev/null +++ b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb @@ -0,0 +1,38 @@ +easyblock = 'Bundle' + +name = 'plotly' +version = '4.7.1' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://cran.r-project.org/web/packages/plotly' +description = """Easily translate 'ggplot2' graphs to an interactive web-based version and/or + create custom web-based visualizations directly from R.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +dependencies = [('R', '3.4.0', '-X11-20170314')] + +exts_defaultclass = 'RPackage' +exts_list = [ + ('htmlwidgets', '0.9', { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', + 'http://cran.r-project.org/src/contrib/', + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', + 'http://cran.r-project.org/src/contrib/', + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', + }), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'vis' -- GitLab From 568217f792d953a8833fe22941faa8700938b69c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 10:46:06 +0200 Subject: [PATCH 338/845] add additional extensions for R 3.4.0 and Bioconductor 3.5 --- .../R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb | 3 ++- .../easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 6 ++++++ 2 files changed, 8 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb index 07b8eb5010..b8dbe2076f 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb @@ -157,8 +157,9 @@ exts_list = [ ('RcppParallel', '4.3.20', ext_options), ('dada2', '1.4.0', bioconductor_options), ('LEA', '1.8.1', bioconductor_options), - ('scran', '1.4.5', bioconductor_options), + ('tximport', '1.4.0', bioconductor_options), ('scater', '1.4.0', bioconductor_options), + ('scran', '1.4.5', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 70f5a7c2e7..920853bd95 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -544,6 +544,12 @@ exts_list = [ ('VIM', '4.7.0', ext_options), ('proxy', '0.4-17', ext_options), ('smoother', '1.1', ext_options), + ('dynamicTreeCut', '1.63-1', ext_options), + ('DT', '0.2', ext_options), + ('beeswarm', '0.2.3', ext_options), + ('vipor', '0.4.5', ext_options), + ('ggbeeswarm', '0.6.0', ext_options), + ('shinydashboard', '0.6.1', ext_options), ] moduleclass = 'lang' -- GitLab From 8c5dcfc0c83ac997c9f551de2363e74b68fae460 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 11:13:20 +0200 Subject: [PATCH 339/845] fix moduleclass for SCnorm --- .../easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb index b7ba7c4828..4f521d3b57 100644 --- a/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb @@ -25,4 +25,4 @@ sanity_check_paths = { 'dirs': [name], } -moduleclass = 'data' +moduleclass = 'bio' -- GitLab From f24db278a0010dc402c794bd3579b0ee166c8a0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 11:19:03 +0200 Subject: [PATCH 340/845] add SHA256 checksum for SCnorm --- .../easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb index 4f521d3b57..9f1e6bee57 100644 --- a/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'https://bioconductor.org/packages/devel/bioc/src/contrib/', ] sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['f7f6b63aade398ab8f7860ca895914c7bd8161bf2387f2727fe44a897124ae02'] dependencies = [ ('R', '3.4.0', '-X11-20170314'), -- GitLab From a4bf421e4dd983aedbc04c259a2e1c252312e741 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 11:19:47 +0200 Subject: [PATCH 341/845] add SHA256 checksum for destiny --- .../easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb index 6dc1fa57a7..9e4e09b90c 100644 --- a/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'https://bioconductor.org/packages/devel/bioc/src/contrib/', ] sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['134210f9b8d6d58309a1f886065175c723e2612b4be819beb9e9fe5707b0f2ac'] dependencies = [ ('R', '3.4.0', '-X11-20170314'), -- GitLab From 30fc3680fb66269fbf1955204e82c8ea89161e75 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 11:21:33 +0200 Subject: [PATCH 342/845] add SHA256 checksums for plotly --- .../easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb index c2e0909198..ba3ed319ce 100644 --- a/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb @@ -20,6 +20,7 @@ exts_list = [ 'http://cran.r-project.org/src/contrib/', ], 'source_tmpl': '%(name)s_%(version)s.tar.gz', + 'checksums': ['1154b541ccd868e41d3cf0d7f188f7275ec99f61fe2c7de21c8a05edb19b985e'], }), (name, version, { 'source_urls': [ @@ -27,6 +28,7 @@ exts_list = [ 'http://cran.r-project.org/src/contrib/', ], 'source_tmpl': '%(name)s_%(version)s.tar.gz', + 'checksums': ['7cd4b040f9bfd9356a8a2aba59ccf318cae6b5d94ded7463e2e823c10fa74972'], }), ] -- GitLab From baa269209e82059dceeafea96fcd07a260ad2681 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 12:25:41 +0200 Subject: [PATCH 343/845] adding easyconfigs: Spark-2.2.0-Hadoop-2.6.eb --- .../s/Spark/Spark-2.2.0-Hadoop-2.6.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb diff --git a/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb b/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb new file mode 100644 index 0000000000..df2b02e0e1 --- /dev/null +++ b/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb @@ -0,0 +1,29 @@ +easyblock = 'Tarball' + +name = 'Spark' +version = '2.2.0' +versionsuffix = '-Hadoop-2.6' + +homepage = 'http://spark.apache.org' +description = """Spark is Hadoop MapReduce done in memory""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s-bin-hadoop2.6.tgz'] +source_urls = [ + 'http://apache.belnet.be/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.eu.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.us.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', +] +checksums = ['86f33f6f4fe545cb848600004144f09b6e8413af47ce02c1203c3ecda075288d'] + +dependencies = [('Java', '1.8.0_144')] + +sanity_check_paths = { + 'files': ['bin/spark-shell'], + 'dirs': ['python'] +} + +modextrapaths = {'PYTHONPATH': 'python'} + +moduleclass = 'devel' -- GitLab From 209ff80de20a266bbd365799cba52394f82c31dd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 12:27:31 +0200 Subject: [PATCH 344/845] adding easyconfigs: CMake-3.9.1.eb, CMake-3.9.1-GCCcore-6.4.0.eb --- .../c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb | 29 +++++++++++++ 2 files changed, 70 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3fbbcb5eaa --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb new file mode 100644 index 0000000000..38fdb83b5d --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +dependencies = [('ncurses', '6.0')] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +# Use OS dependencies in order to ensure that CMake can build software that +# depends on them +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel'), 'ncurses-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 67baf477eb6391664761b4ef2c3ebe212d016dd1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 12:28:38 +0200 Subject: [PATCH 345/845] adding easyconfigs: Maven-3.5.0.eb --- easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb | 23 ++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb diff --git a/easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb b/easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb new file mode 100644 index 0000000000..cae59a3997 --- /dev/null +++ b/easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb @@ -0,0 +1,23 @@ +easyblock = 'PackedBinary' + +name = 'Maven' +version = '3.5.0' + +homepage = 'http://maven.apache.org/index.html' +description = """Binary maven install, Apache Maven is a software project management and comprehension tool. Based on +the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a +central piece of information. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['apache-maven-%(version)s-bin.tar.gz'] +source_urls = ['http://apache.org/dist/maven/maven-%(version_major)s/%(version)s/binaries/'] +checksums = ['beb91419245395bd69a4a6edad5ca3ec1a8b64e41457672dc687c173a495f034'] + +sanity_check_paths = { + 'files': ['bin/mvn'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From ce235fddf743baf427ae5597f72375f0baa7fd6c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 12:33:01 +0200 Subject: [PATCH 346/845] remove ncurses dep in dummy easyconfig for CMake 3.9.1 --- easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb index 38fdb83b5d..deece4acb7 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb @@ -13,8 +13,6 @@ source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] -dependencies = [('ncurses', '6.0')] - configopts = '-- -DCMAKE_USE_OPENSSL=1' # Use OS dependencies in order to ensure that CMake can build software that -- GitLab From f76ab46a110c33923437d6b292d8671552b27051 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 13:34:44 +0200 Subject: [PATCH 347/845] add Java version to versionsuffix for Spark 2.2.0 --- ...0-Hadoop-2.6.eb => Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/s/Spark/{Spark-2.2.0-Hadoop-2.6.eb => Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb} (94%) diff --git a/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb b/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb similarity index 94% rename from easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb rename to easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb index df2b02e0e1..8b3d26f8e7 100644 --- a/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6.eb +++ b/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb @@ -2,7 +2,7 @@ easyblock = 'Tarball' name = 'Spark' version = '2.2.0' -versionsuffix = '-Hadoop-2.6' +versionsuffix = '-Hadoop-2.6-Java-%(javaver)s' homepage = 'http://spark.apache.org' description = """Spark is Hadoop MapReduce done in memory""" -- GitLab From eb9e418eaaaa0cc6345d782158bcc71a22af1735 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 13:35:52 +0200 Subject: [PATCH 348/845] change moduleclass to bio for destiny --- .../easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb index 9e4e09b90c..7aaefec7f2 100644 --- a/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb @@ -26,4 +26,4 @@ sanity_check_paths = { 'dirs': [name], } -moduleclass = 'data' +moduleclass = 'bio' -- GitLab From 7f20ae1797f55f023a4941774458b1c124de61a9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 15:58:35 +0200 Subject: [PATCH 349/845] add checksum in easyconfig for HPL 2.2 w/ intel/2017b --- easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb index 32a513858c..6fb2407196 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017b.eb @@ -11,6 +11,7 @@ toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] +checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'] # fix Make dependencies, so parallel build also works patches = ['HPL_parallel-make.patch'] -- GitLab From dee655242e772a456f7d7d1eb926a2b76d0cbeb9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 11 Aug 2017 15:58:52 +0200 Subject: [PATCH 350/845] fix URL for EasyBuild website (hpcugent -> easybuilders) --- easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- .../i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb | 2 +- .../impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb index 05acc34697..8bae3f29f2 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild name = 'icc' version = '2017.4.196' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb index a3c7d6585e..35f4cd4d02 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild easyblock = 'Toolchain' name = 'iccifort' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb index b3b151820c..d3692d8024 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild name = 'ifort' version = '2017.4.196' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb index 53c7c29886..76e9e5a6d7 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb index 4d773b67ad..092481da75 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild name = 'imkl' version = '2017.3.196' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb index 2e46f8a579..827bd87f06 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild name = 'impi' version = '2017.3.196' -- GitLab From efad9cdc6952a22eeed650e8f0e3767217c77abb Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 11 Aug 2017 18:06:08 +0200 Subject: [PATCH 351/845] matplotlib for python 2.7.1 in foss 2017a --- ...tplotlib-2.0.2-foss-2017a-Python-2.7.13.eb | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..1af6c380d6 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,44 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('freetype', '2.7.1'), + ('libpng', '1.6.29'), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' -- GitLab From 1e3e3df517b23c481c5476da00783132f5133c02 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 11 Aug 2017 18:30:19 +0200 Subject: [PATCH 352/845] checksum MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Added checksum as of boegel’s request (cut-n-paste from his email) --- .../m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb index 1af6c380d6..aa55e74d47 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -25,9 +25,11 @@ exts_list = [ 'modulename': 'cycler', 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], 'source_tmpl': 'cycler-%(version)s.tar.gz', + 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], }), (name, version, { 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + 'checksums': ['0ffbc44faa34a8b1704bc108c451ecf87988f900ef7ce757b8e2e84383121ff1'], }), ] -- GitLab From 4adbd650b01e08315db0e2adb2e3c1a077c4c4bf Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 11 Aug 2017 18:44:58 +0200 Subject: [PATCH 353/845] libpng version conflict resolution Working on different png versions in png and freetype dependency in matplotlib --- .../matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb index aa55e74d47..bc892ebed0 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -4,6 +4,8 @@ name = 'matplotlib' version = '2.0.2' versionsuffix = '-Python-%(pyver)s' +libpng_ver = '1.6.29' + homepage = 'http://matplotlib.org' description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python @@ -16,8 +18,8 @@ exts_defaultclass = 'PythonPackage' dependencies = [ ('Python', '2.7.13'), - ('freetype', '2.7.1'), - ('libpng', '1.6.29'), + ('libpng', libpng_ver), + ('freetype', '2.7.1', '-libpng'%s' % libpng_ver), ] exts_list = [ -- GitLab From d6a712a4961e52b2580b1da6b4b413ce63ea8d39 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 11 Aug 2017 18:49:18 +0200 Subject: [PATCH 354/845] typo corrected --- .../m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb index bc892ebed0..11e7af5189 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -19,7 +19,7 @@ exts_defaultclass = 'PythonPackage' dependencies = [ ('Python', '2.7.13'), ('libpng', libpng_ver), - ('freetype', '2.7.1', '-libpng'%s' % libpng_ver), + ('freetype', '2.7.1', '-libpng' % libpng_ver), ] exts_list = [ -- GitLab From 56deaf7a03420ed541d937aa1afdc4b9b1014ed3 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 11 Aug 2017 18:53:02 +0200 Subject: [PATCH 355/845] another typo fix --- .../m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb index 11e7af5189..b374975f21 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -19,7 +19,7 @@ exts_defaultclass = 'PythonPackage' dependencies = [ ('Python', '2.7.13'), ('libpng', libpng_ver), - ('freetype', '2.7.1', '-libpng' % libpng_ver), + ('freetype', '2.7.1', '-libpng-%s' % libpng_ver), ] exts_list = [ -- GitLab From e9a7d31877e88bfee688d3fd8bb0a23a2fe920c8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 12 Aug 2017 10:59:20 +0200 Subject: [PATCH 356/845] consistently add SHA256 checksums for easyconfigs added in PR #4650 --- .../easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb | 1 + .../easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb | 1 + easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb | 1 - easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb | 1 + easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb | 1 - .../b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb | 5 +---- easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb | 2 +- .../c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb | 1 + .../g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb | 1 + easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb | 1 - .../p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb | 7 ++++--- .../p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb | 5 ++++- .../p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb | 2 ++ .../easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb | 5 ++++- .../easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb | 5 ++++- .../easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb | 5 +++-- 16 files changed, 28 insertions(+), 16 deletions(-) diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb index 5e317e5ad2..4eb88ea428 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.68-foss-2016b.eb @@ -25,6 +25,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['eff70a2916f2e2b3ed7fe8a2d7e63d72cf3a23684b56456b319c3ebce0705d99'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb index ce98c370d2..14c71f2afe 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.11.3-foss-2016b.eb @@ -25,6 +25,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['921b5188057e57bdd9c0ba06e21d0b0ea7dafa61a9bd08a2b041215bcff12f55'] dependencies = [('Autoconf', '2.68')] diff --git a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb index 3dedc086be..7594f00931 100644 --- a/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BAMM/BAMM-2.5.0-foss-2016b.eb @@ -24,7 +24,6 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/macroevolution/bamm/archive'] sources = ['v%(version)s.tar.gz'] - checksums = ['526eef85ef011780ee21fe65cbc10ecc62efe54044102ae40bdef49c2985b4f4'] builddependencies = [ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb index e4305c6932..b0a3f2b64e 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.12-foss-2016b.eb @@ -31,5 +31,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['https://github.com/lh3/%(name)s/archive/'] sources = ['%(version)s.tar.gz'] +checksums = ['285f55b7fa1f9e873eda9a9b06752378a799ecdecbc886bbd9ba238045bf62e0'] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb index 6f791c6734..0b550e42bf 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016b.eb @@ -22,7 +22,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = [('http://sourceforge.net/projects/bio-bwa/files/', 'download')] - checksums = ['2f56afefa49acc9bf45f12edb58e412565086cc20be098b8bf15ec07de8c0515'] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb index f16e116a9d..8ce237eb4a 100644 --- a/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/BamM/BamM-1.7.3-foss-2016b-Python-2.7.12.eb @@ -23,10 +23,7 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/Ecogenomics/BamM/archive'] sources = ['%(version)s.tar.gz'] - -checksums = [ - '1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8', -] +checksums = ['1a30a5014aa64aea23f12b82c8e474044af126c9e6ddb575530ab14b6ef765b8'] builddependencies = [ ('Automake', '1.11.3'), diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb index 50a94f1293..1e6167de54 100644 --- a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-foss-2016b.eb @@ -21,8 +21,8 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/Blosc/c-blosc/archive/'] sources = ['v%(version)s.tar.gz'] - checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8'] + builddependencies = [('CMake', '3.7.2')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb index a99c8efcb6..9257f52f81 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.25.2-foss-2016b-Python-2.7.12.eb @@ -24,6 +24,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['f141d1f9c27a07b5a93f7dc5339472067e2d7140d1c5a9e20112a5665ca60306'] dependencies = [('Python', '2.7.12')] diff --git a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb index 12f6cbd8f8..03b1e223bf 100644 --- a/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/g/GroopM/GroopM-0.3.4-foss-2016b-Python-2.7.12.eb @@ -25,6 +25,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['48bdaeb9010e7d81785697a55edc394ef36c2646b310d625a24bec740f1b6080'] dependencies = [ ('Python', '2.7.12'), diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb index 1490555ba3..4343f1f671 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.10-foss-2016b.eb @@ -20,7 +20,6 @@ description = "Portable lossless data compression library" sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage + 'download/'] - checksums = ['c0f892943208266f9b6543b3ae308fab6284c5c90e627931446fb49b4221a072'] toolchain = {'name': 'foss', 'version': '2016b'} diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb index e3972be37c..d183ed8acb 100644 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-foss-2016b-Python-2.7.12.eb @@ -23,10 +23,11 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['http://effbot.org/downloads/'] sources = ['Imaging-%(version)s.tar.gz'] - -checksums = ['895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211'] - patches = ['PIL-%(version)s-find-deps.patch'] +checksums = [ + '895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211', # Imaging-1.1.7.tar.gz + '4a37bc66b7683e9eab2b762d6ee58b203e1ba34724782cbd53adbae77905899e', # PIL-1.1.7-find-deps.patch +] dependencies = [ ('zlib', '1.2.8'), diff --git a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb index 1b47f5f820..39245661ae 100644 --- a/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyTables/PyTables-3.3.0-foss-2016b-Python-2.7.12.eb @@ -29,8 +29,11 @@ toolchainopts = {'openmp': True, 'usempi': True} source_urls = ['https://github.com/PyTables/PyTables/archive/'] sources = ['v%(version)s.tar.gz'] - patches = ['pyTables-3.2.2-fix-libs.patch'] +checksums = [ + 'dceb15fef556a2775121bcc695561df4ff0e09248e0ce3a2d58f5244a9f61421', # v3.3.0.tar.gz + '3a5695613215dca13a2e8e771762f1d541390884e438bc73263120d8bf377f43', # pyTables-3.2.2-fix-libs.patch +] dependencies = [ ('Python', '2.7.12'), diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb index b341dbe1c1..d8682d26e1 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-foss-2016b-Python-2.7.12.eb @@ -32,10 +32,12 @@ exts_filter = ("python -c 'import %(ext_name)s'", '') exts_list = [ ('Cython', '0.25.2', { 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': ['f141d1f9c27a07b5a93f7dc5339472067e2d7140d1c5a9e20112a5665ca60306'], }), ('pysam', version, { 'source_tmpl': 'v%(version)s.tar.gz', 'source_urls': ['https://github.com/pysam-developers/pysam/archive/'], + 'checksums': ['c83b88df7e47fe2ac24996fb6ec5a304cd1301ee4688f3f94443e4a742b2bbd6'], }), ] diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb index 56960c20c6..af14010ad9 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2016b.eb @@ -21,8 +21,11 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] - patches = ['SAMtools-1.1_Makefile.patch'] +checksums = [ + '420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa', # samtools-1.2.tar.bz2 + 'd0d6796db7edb9ceb0c410001c3b00b521d97bcf908650c8f7528a4438f765e1', # SAMtools-1.1_Makefile.patch +] dependencies = [ ('ncurses', '6.0'), diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb index b99bb23bc1..4e46414370 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016b.eb @@ -22,9 +22,12 @@ toolchainopts = {'pic': True} source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] sources = [SOURCELOWER_TAR_BZ2] - # Patch Makefile to link against zlib provided by EB patches = ['SAMtools-%(version)s_Makefile.patch'] +checksums = [ + '6c3d74355e9cf2d9b2e1460273285d154107659efa36a155704b1e4358b7d67e', # samtools-1.3.1.tar.bz2 + '3760243ab6275ad111079794cc63a2f258b16cab39d94acc21eb774d029d245b', # SAMtools-1.3.1_Makefile.patch +] dependencies = [ ('ncurses', '6.0'), diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb b/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb index 35739f65d5..5ff7e5d7fd 100644 --- a/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb @@ -17,10 +17,11 @@ version = '6.4' homepage = 'https://www.gnu.org/software/texinfo/' description = """Texinfo is the official documentation format of the GNU project.""" +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_XZ] - -toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +checksums = ['6ae2e61d87c6310f9af7c6f2426bd0470f251d1a6deb61fba83a3b3baff32c3a'] osdependencies = ['texlive'] -- GitLab From 9002b495652c0cce390214a046e56cc1b622d940 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 12:12:59 +0200 Subject: [PATCH 357/845] kallisto/0.43.1 for intel/2017a --- .../k/kallisto/kallisto-0.43.1-intel-2017a.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb new file mode 100644 index 0000000000..99b00b6213 --- /dev/null +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'kallisto' +version = '0.43.1' + +homepage = 'http://pachterlab.github.io/kallisto/' +description = """kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally + of target sequences using high-throughput sequencing reads.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/pachterlab/kallisto/archive/'] +sources = ['v%(version)s.tar.gz'] + +checksums = ['7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400'] + +builddependencies = [('CMake', '3.9.1')] + +dependencies = [('HDF5', '1.8.19')] + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/kallisto'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 12fefbd86a76953935091218305a3f36f1fa0bcb Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 12:37:38 +0200 Subject: [PATCH 358/845] Add Rcorrector/1.0.2 for intel/2017a --- .../Jellyfish/Jellyfish-2.2.6-intel-2017a.eb | 32 +++++++++++++++++++ .../Rcorrector-1.0.2-intel-2017a.eb | 25 +++++++++++++++ .../r/Rcorrector/fix-makefile-1.0.2.patch | 12 +++++++ 3 files changed, 69 insertions(+) create mode 100644 easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb create mode 100644 easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb create mode 100644 easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb new file mode 100644 index 0000000000..96345d490a --- /dev/null +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'Jellyfish' +version = '2.2.6' + +homepage = 'http://www.genome.umd.edu/jellyfish.html' +description = """ Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/gmarcais/Jellyfish/releases/download/v%(version)s'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e'] + +parallel = 1 + +# The tests for the Bloom filter are statistical tests and can randomly fail, they actually don't make a lot of sense +runtest = "check GTEST_FILTER=-'*Bloom*'" + +postinstallcmds = ["cp config.h %(installdir)s/include/%(namelower)s-%(version)s/%(namelower)s/"] + +sanity_check_paths = { + 'files': ['bin/jellyfish'], + 'dirs': [] +} + +modextrapaths = {'CPATH': 'include/%(namelower)s-%(version)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb new file mode 100644 index 0000000000..5333492c70 --- /dev/null +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'MakeCp' + +name = 'Rcorrector' +version = '1.0.2' + +homepage = 'https://github.com/mourisl/Rcorrector' +description = """Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'cstd': 'c++11'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/mourisl/Rcorrector/archive'] + +patches = ['fix-makefile-%(version)s.patch'] + +dependencies = [('Jellyfish', '2.2.6')] + +files_to_copy = [('rcorrector', 'bin'), 'README.md', 'LICENSE', 'Sample'] + +sanity_check_paths = { + 'files': ['bin/rcorrector'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch b/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch new file mode 100644 index 0000000000..1e6d35c369 --- /dev/null +++ b/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch @@ -0,0 +1,12 @@ +--- Makefile.orig 2017-08-14 12:33:11.280163633 +0200 ++++ Makefile 2017-08-14 12:36:46.085730155 +0200 +@@ -1,6 +1,6 @@ +-CXX = g++ +-CXXFLAGS= -Wall -O3 -std=c++0x +-LINKFLAGS = -I . -lpthread -lz ++CXX := $(CXX) ++CXXFLAGS := $(CXXFLAGS) ++LINKFLAGS := -I. $(LDFLAGS) + DEBUG= + jellyfishPath = `which jellyfish` + jellyfishVersion = `jellyfish --version | cut -f2 -d' ' | cut -f1 -d'.'` -- GitLab From 4fce62f38778e3b39deac4cbb78a928f4d83cde9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 12:38:13 +0200 Subject: [PATCH 359/845] Trim_Galore/0.4.4 for intel/2017a --- ...cutadapt-1.14-intel-2017a-Python-2.7.14.eb | 32 ++++++++++++++++++ .../Trim_Galore-0.4.4-intel-2017a.eb | 33 +++++++++++++++++++ 2 files changed, 65 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb create mode 100755 easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb new file mode 100644 index 0000000000..9397e22d2b --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.9.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://opensource.scilifelab.se/projects/cutadapt/' +description = """ Cutadapt finds and removes adapter sequences, primers, poly-A tails and + other types of unwanted sequence from your high-throughput sequencing reads. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '2.7.12'), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt'], + 'dirs': ['lib/python%(pyshortver)s/site-packages/cutadapt/'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb new file mode 100755 index 0000000000..40247e6a53 --- /dev/null +++ b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb @@ -0,0 +1,33 @@ +# 0.4.2 modified by: +# Adam Huffman +# The Francis Crick Institute +# TODO: deal with the hardcoding of /usr/bin/perl + +easyblock = "PackedBinary" + +name = 'Trim_Galore' +version = '0.4.4' + +homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/' +description = """A wrapper tool around Cutadapt and FastQC to consistently apply + quality and adapter trimming to FastQ files, with some extra functionality for + MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['%(namelower)s_v%(version)s.zip'] +source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] + +install_cmd = "cp -a * %(installdir)s && chmod +x %(installdir)s/%(namelower)s" + +dependencies = [ + ('FastQC', '0.11.5', '-Java-1.8.0_74', True), + ('cutadapt', '1.14', '-Python-2.7.13'), +] + +sanity_check_paths = { + 'files': ["trim_galore"], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From ffc9f10ce1059662215fe6c5aa631224a69db5f8 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 12:45:54 +0200 Subject: [PATCH 360/845] Fix small errors --- ...2.7.14.eb => cutadapt-1.14-intel-2017a-Python-2.7.13.eb} | 6 +++--- .../easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/c/cutadapt/{cutadapt-1.14-intel-2017a-Python-2.7.14.eb => cutadapt-1.14-intel-2017a-Python-2.7.13.eb} (89%) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb similarity index 89% rename from easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb rename to easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb index 9397e22d2b..9443c3e602 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.14.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb @@ -8,20 +8,20 @@ easyblock = "PythonPackage" name = 'cutadapt' -version = '1.9.1' +version = '1.14' versionsuffix = '-Python-%(pyver)s' homepage = 'http://opensource.scilifelab.se/projects/cutadapt/' description = """ Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. """ -toolchain = {'name': 'foss', 'version': '2016b'} +toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('Python', '2.7.12'), + ('Python', '2.7.13'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb index 99b00b6213..fd30492064 100644 --- a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb @@ -17,7 +17,7 @@ sources = ['v%(version)s.tar.gz'] checksums = ['7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400'] -builddependencies = [('CMake', '3.9.1')] +builddependencies = [('CMake', '3.8.2')] dependencies = [('HDF5', '1.8.19')] -- GitLab From 414c49627a27d835ff84b1bf897e2df96ac06fda Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 13:53:54 +0200 Subject: [PATCH 361/845] Fix Rcorrector --- .../r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb | 8 ++++++-- .../easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch | 2 +- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb index 5333492c70..67947aaafa 100644 --- a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb @@ -14,12 +14,16 @@ source_urls = ['https://github.com/mourisl/Rcorrector/archive'] patches = ['fix-makefile-%(version)s.patch'] -dependencies = [('Jellyfish', '2.2.6')] +dependencies = [ + ('zlib', '1.2.11'), + ('Jellyfish', '2.2.6'), +] -files_to_copy = [('rcorrector', 'bin'), 'README.md', 'LICENSE', 'Sample'] +files_to_copy = [(['rcorrector'], 'bin'), 'README.md', 'LICENSE', 'Sample'] sanity_check_paths = { 'files': ['bin/rcorrector'], + 'dirs': [], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch b/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch index 1e6d35c369..7dab68cd0c 100644 --- a/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch +++ b/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch @@ -6,7 +6,7 @@ -LINKFLAGS = -I . -lpthread -lz +CXX := $(CXX) +CXXFLAGS := $(CXXFLAGS) -+LINKFLAGS := -I. $(LDFLAGS) ++LINKFLAGS := -I. $(LDFLAGS) $(LIBS) -lz DEBUG= jellyfishPath = `which jellyfish` jellyfishVersion = `jellyfish --version | cut -f2 -d' ' | cut -f1 -d'.'` -- GitLab From 09d0b2df0e35f2beead543d7644840f05d2dbf89 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 14:27:15 +0200 Subject: [PATCH 362/845] Fix kallisto Upstream seems to have changed the tarball of 0.43.1 so the checksum is different... --- .../easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb index fd30492064..843003952a 100644 --- a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb @@ -15,11 +15,14 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://github.com/pachterlab/kallisto/archive/'] sources = ['v%(version)s.tar.gz'] -checksums = ['7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400'] +checksums = ['2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e'] builddependencies = [('CMake', '3.8.2')] -dependencies = [('HDF5', '1.8.19')] +dependencies = [ + ('zlib', '1.2.11'), + ('HDF5', '1.8.19'), +] separate_build_dir = True -- GitLab From 27e6b15d4c46583c5fa2e9e447073a936e91b3df Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 14 Aug 2017 14:47:52 +0200 Subject: [PATCH 363/845] Fix cutadapt sanity check --- .../c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb index 9443c3e602..0bcc6df002 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb @@ -26,7 +26,7 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/cutadapt'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/cutadapt/'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], } moduleclass = 'bio' -- GitLab From 72eb37e0763cb87c69cd330e254687d2b6b2c679 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Mon, 14 Aug 2017 15:16:13 +0200 Subject: [PATCH 364/845] Fixed indentation --- .../m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb index b374975f21..402493847b 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -27,11 +27,11 @@ exts_list = [ 'modulename': 'cycler', 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], 'source_tmpl': 'cycler-%(version)s.tar.gz', - 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], + 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], }), (name, version, { 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], - 'checksums': ['0ffbc44faa34a8b1704bc108c451ecf87988f900ef7ce757b8e2e84383121ff1'], + 'checksums': ['0ffbc44faa34a8b1704bc108c451ecf87988f900ef7ce757b8e2e84383121ff1'], }), ] -- GitLab From b045d9af0df1b430c9f2b9ae52283ecffd1fc359 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Tue, 15 Aug 2017 13:37:21 +0200 Subject: [PATCH 365/845] File set to install pyzmq in foss 2017a --- .../libsodium/libsodium-1.0.13-foss-2017a.eb | 22 ++++++++++++ .../o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb | 30 ++++++++++++++++ ...MQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb | 30 ++++++++++++++++ .../util-linux-2.30.1-foss-2017a.eb | 34 ++++++++++++++++++ .../z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb | 36 +++++++++++++++++++ 5 files changed, 152 insertions(+) create mode 100644 easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb create mode 100644 easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb create mode 100644 easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb create mode 100644 easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb new file mode 100644 index 0000000000..8853e15fa5 --- /dev/null +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'libsodium' +version = '1.0.13' + +homepage = 'http://doc.libsodium.org/' +description = """Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, + password hashing and more.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['https://download.libsodium.org/libsodium/releases/'] +sources = [SOURCE_TAR_GZ] + +checksums = ['f38aac160a4bd05f06f743863e54e499'] + +sanity_check_paths = { + 'files': ['include/sodium.h', 'lib/libsodium.%s' % SHLIB_EXT, 'lib/libsodium.a'], + 'dirs': ['include/sodium', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb new file mode 100644 index 0000000000..93a030d6ea --- /dev/null +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'OpenPGM' +version = '5.2.122' + +homepage = 'http://code.google.com/p/openpgm/' +description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) + specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol + that enables receivers to detect loss, request retransmission of lost data, or notify an application + of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible + for ensuring all data is received, absolving the sender of reception responsibility.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] +sources = ['libpgm-%(version)s.tar.gz'] + +checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] + +configopts = '--with-pic' + +start_dir = 'pgm' + +sanity_check_paths = { + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb new file mode 100644 index 0000000000..ecb43ca881 --- /dev/null +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'PyZMQ' +version = '16.0.2' +zmqversion = '4.2.2' +versionsuffix = '-Python-%%(pyver)s-zmq%s' % zmqversion.split('.')[0] + +homepage = 'http://www.zeromq.org/bindings:python' +description = """Python bindings for ZeroMQ""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['9a8768b00a566a400d70318f8c359cfe'] + +dependencies = [ + ('Python', '2.7.13'), + ('ZeroMQ', zmqversion), +] + +options = {'modulename': 'zmq'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/zmq'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb new file mode 100644 index 0000000000..dabbcbd2d4 --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.30.1' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['22a860a2d98367e73e414a09dfaf3866'] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +dependencies = [('ncurses', '6.0')] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb new file mode 100644 index 0000000000..d690b704a1 --- /dev/null +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'ZeroMQ' +version = '4.2.2' + +homepage = 'http://www.zeromq.org/' +description = """ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. + It gives you sockets that carry atomic messages across various transports like in-process, + inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, + pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered + products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous + message-processing tasks. It has a score of language APIs and runs on most operating systems.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['https://github.com/zeromq/libzmq/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['52499909b29604c1e47a86f1cb6a9115'] + +# --with-pgm will use shipped OpenPGM (in foreign subdir) +configopts = '--with-pic --with-system-pgm ' +configopts += 'OpenPGM_CFLAGS="-I$EBROOTOPENPGM/include/pgm-${EBVERSIONOPENPGM%.*}" ' +configopts += 'OpenPGM_LIBS="-L$EBROOTOPENPGM/lib -lpgm -lrt -lpthread -lm" ' + +dependencies = [ + ('OpenPGM', '5.2.122'), + ('util-linux', '2.30.1'), + ('libsodium', '1.0.13'), +] + +sanity_check_paths = { + 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'dirs': ['include', 'lib'], +} + +moduleclass = 'devel' -- GitLab From 35bd7d2a41377eb818658fdeeb7b7c576dfcdf14 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 15 Aug 2017 19:53:04 +0100 Subject: [PATCH 366/845] Update Tesla-Deployment-Kit-5.319.43.eb --- .../t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index e759c8ef98..4ec1dc753b 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -32,7 +32,9 @@ sanity_check_paths = { modextrapaths = { 'PATH': ['nvidia-healthmon'], 'CPATH': ['nvml/include'], + 'INCLUDEPATH': ['nvml/include'], 'MANPATH': ['nvml/doc/man'], + 'LIBRARY_PATH': ['nvml/lib', 'nvml/lib64'], 'LD_LIBRARY_PATH': ['nvml/lib', 'nvml/lib64'], } -- GitLab From 96bc1f02e26f442838b850d3414575798f34c300 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 16 Aug 2017 09:25:59 +0200 Subject: [PATCH 367/845] Add HTSeq with dependency --- .../HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb | 35 +++++++++++++++++++ .../numpy-1.10.1-foss-2016b-Python-2.7.12.eb | 25 +++++++++++++ 2 files changed, 60 insertions(+) create mode 100644 easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..8c17ecee2f --- /dev/null +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = "PythonPackage" + +name = 'HTSeq' +version = '0.9.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www-huber.embl.de/users/anders/HTSeq/' +description = """A framework to process and analyze data from high-throughput sequencing (HTS) assays""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +checksums = ['af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485'] + +dependencies = [ + ('numpy', '1.10.1', versionsuffix), + ('Pysam', '0.9.1.4', versionsuffix), + ('Python', '2.7.12'), + ('matplotlib', '1.5.3', versionsuffix), +] + +sanity_check_paths = { + 'files': ["bin/htseq-count", "bin/htseq-qa"], + 'dirs': ["lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s-linux-x86_64.egg"], +} + +sanity_check_commands = [('htseq-count', '--help')] + +options = {'modulename': '%(name)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..dfcb878733 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'numpy' +version = '1.10.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +checksums = ['8b9f453f29ce96a14e625100d3dcf8926301d36c5f622623bf8820e748510858'] + +dependencies = [ + ('Python', '2.7.12'), +] + +moduleclass = 'math' -- GitLab From 8d824394660913f330c4ce59949d7ed33746b84a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 16 Aug 2017 12:12:29 +0200 Subject: [PATCH 368/845] Remove numpy numpy 1.11.1 is already included in the Python EasyConfig --- .../HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb | 1 - .../numpy-1.10.1-foss-2016b-Python-2.7.12.eb | 25 ------------------- 2 files changed, 26 deletions(-) delete mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb index 8c17ecee2f..e34fbfe1e2 100644 --- a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb @@ -17,7 +17,6 @@ sources = [SOURCE_TAR_GZ] checksums = ['af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485'] dependencies = [ - ('numpy', '1.10.1', versionsuffix), ('Pysam', '0.9.1.4', versionsuffix), ('Python', '2.7.12'), ('matplotlib', '1.5.3', versionsuffix), diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index dfcb878733..0000000000 --- a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,25 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild - -name = 'numpy' -version = '1.10.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.numpy.org' -description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: - a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran - code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, - NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be - defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -checksums = ['8b9f453f29ce96a14e625100d3dcf8926301d36c5f622623bf8820e748510858'] - -dependencies = [ - ('Python', '2.7.12'), -] - -moduleclass = 'math' -- GitLab From 3e9ac7675b08f99890c000748bbad72a3f5d847a Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 16 Aug 2017 12:15:18 +0200 Subject: [PATCH 369/845] h5py for Python 2.7 in foss 2017a (based on HDF5 1.8 and 1.10) This commit contains the full file set required to build h5py based on HDF5 1.8.19 and 1.10.1 in foss 2016a. This contains all pre-requisites required in EB 3.3.1. Also updated all h5py 2.7.0 configurations to do md5 checksum tests. --- .../h/HDF5/HDF5-1.10.1-foss-2017a.eb | 21 +++++++++++ .../h/HDF5/HDF5-1.8.19-foss-2017a.eb | 21 +++++++++++ ....0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb | 35 +++++++++++++++++++ ....0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb | 35 +++++++++++++++++++ .../h5py-2.7.0-intel-2016b-Python-2.7.12.eb | 1 + .../h5py-2.7.0-intel-2017a-Python-2.7.13.eb | 1 + ...l-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb | 1 + .../h5py-2.7.0-intel-2017a-Python-3.6.1.eb | 1 + ...kgconfig-1.2.2-foss-2017a-Python-2.7.13.eb | 26 ++++++++++++++ .../s/Szip/Szip-2.1.1-foss-2017a.eb | 25 +++++++++++++ 10 files changed, 167 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb create mode 100644 easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb new file mode 100644 index 0000000000..1735fdaa3c --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb @@ -0,0 +1,21 @@ +name = 'HDF5' +version = '1.10.1' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] + +sources = [SOURCELOWER_TAR_GZ] +checksums = ['43a2f9466702fb1db31df98ae6677f15'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb new file mode 100644 index 0000000000..ee3d1c9446 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb @@ -0,0 +1,21 @@ +name = 'HDF5' +version = '1.8.19' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] + +sources = [SOURCELOWER_TAR_GZ] +checksums = ['7f568e2464d4ab0a74d16b23956d900b'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb new file mode 100644 index 0000000000..3af541c153 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.7.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f62937f40f68d3b128b3941be239dd93'] + +hdf5ver = '1.10.1' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '2.7.13'), + ('HDF5', hdf5ver), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb new file mode 100644 index 0000000000..eb3b1702ae --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.7.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f62937f40f68d3b128b3941be239dd93'] + +hdf5ver = '1.8.19' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '2.7.13'), + ('HDF5', hdf5ver), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb index adc15ffb81..404bad2e73 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb @@ -14,6 +14,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['f62937f40f68d3b128b3941be239dd93'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb index 300f1e3d6e..e54f796b4d 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb @@ -14,6 +14,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['f62937f40f68d3b128b3941be239dd93'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb index 22fe0fbf91..6a8d852d7a 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb @@ -15,6 +15,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['f62937f40f68d3b128b3941be239dd93'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb index b00f2d835b..b93f4ba7bc 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb @@ -14,6 +14,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['f62937f40f68d3b128b3941be239dd93'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..da605c6661 --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.2.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.13'), + ('pkg-config', '0.29.2'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb new file mode 100644 index 0000000000..19df3f68d9 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['dd579cf0f26d44afd10a0ad7291fc282'] + + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From c5fb6783026bc8347fc0a19ffce0c1e9d4c45bf1 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 16 Aug 2017 12:24:02 +0200 Subject: [PATCH 370/845] removed some whitespace to resolve a conflict --- easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb index 1735fdaa3c..9b47efe44f 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb @@ -9,7 +9,6 @@ toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] - sources = [SOURCELOWER_TAR_GZ] checksums = ['43a2f9466702fb1db31df98ae6677f15'] -- GitLab From 86e86853cdb7a3f156a9ceb107040a71923ea63e Mon Sep 17 00:00:00 2001 From: Maarten Bosmans Date: Wed, 16 Aug 2017 12:31:43 +0200 Subject: [PATCH 371/845] iompi: OpenMPI dependency must come after icc/ifort --- easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb index 9580ff5296..f69ecfb47a 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2016.3.210-GCC-4.9.3-2.25' dependencies = [ - ('OpenMPI', '1.10.4', '', ('iccifort', compver)), ('icc', compver), ('ifort', compver), + ('OpenMPI', '1.10.4', '', ('iccifort', compver)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb index db8c7fb2af..7a279c30c6 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2016.3.210-GCC-5.4.0-2.26' dependencies = [ - ('OpenMPI', '1.10.3', '', ('iccifort', compver)), ('icc', compver), ('ifort', compver), + ('OpenMPI', '1.10.3', '', ('iccifort', compver)), ] moduleclass = 'toolchain' -- GitLab From 2d5ea35387a3cab4c11619e00a0c4d7ac346a164 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Paul=20J=C3=A4hne?= Date: Wed, 16 Aug 2017 12:57:28 +0200 Subject: [PATCH 372/845] Correct sanity_check_commands format --- .../easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb index e34fbfe1e2..0e056b9e6c 100644 --- a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-foss-2016b-Python-2.7.12.eb @@ -27,7 +27,7 @@ sanity_check_paths = { 'dirs': ["lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s-linux-x86_64.egg"], } -sanity_check_commands = [('htseq-count', '--help')] +sanity_check_commands = [('htseq-count --help')] options = {'modulename': '%(name)s'} -- GitLab From 8f20796ee9e8fa3222d39f036cd01f18d2a1f5d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 13:27:11 +0200 Subject: [PATCH 373/845] adding easyconfigs: Qt-4.8.7-foss-2017a.eb, GLib-2.52.0-foss-2017a.eb, libGLU-9.0.0-foss-2017a.eb, Mesa-17.0.2-foss-2017a.eb, PCRE-8.40-foss-2017a.eb, util-linux-2.29.2-foss-2017a.eb, nettle-3.3-foss-2017a.eb, libdrm-2.4.76-foss-2017a.eb, Mako-1.0.6-foss-2017a-Python-2.7.13.eb, libxml2-2.9.4-foss-2017a-Python-2.7.13.eb --- .../g/GLib/GLib-2.52.0-foss-2017a.eb | 35 ++++++++++ .../l/libGLU/libGLU-9.0.0-foss-2017a.eb | 24 +++++++ .../l/libdrm/libdrm-2.4.76-foss-2017a.eb | 24 +++++++ .../libxml2-2.9.4-foss-2017a-Python-2.7.13.eb | 24 +++++++ .../Mako-1.0.6-foss-2017a-Python-2.7.13.eb | 22 +++++++ .../m/Mesa/Mesa-17.0.2-foss-2017a.eb | 66 +++++++++++++++++++ .../n/nettle/nettle-3.3-foss-2017a.eb | 30 +++++++++ .../p/PCRE/PCRE-8.40-foss-2017a.eb | 18 +++++ .../easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb | 29 ++++++++ .../util-linux-2.29.2-foss-2017a.eb | 36 ++++++++++ 10 files changed, 308 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb create mode 100644 easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb create mode 100644 easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb create mode 100644 easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb create mode 100644 easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb create mode 100644 easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb new file mode 100644 index 0000000000..46fb65d7e5 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.52.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.8.1'), + ('libxml2', '2.9.4'), + ('PCRE', '8.40'), + ('util-linux', '2.29.2'), +] + +builddependencies = [('Python', '2.7.13')] + +configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --disable-systemtap " +configopts += "--enable-static --enable-shared" + +postinstallcmds = ["sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] + +sanity_check_paths = { + 'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb new file mode 100644 index 0000000000..ece6ffd732 --- /dev/null +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libGLU' +version = '9.0.0' + +homepage = 'ftp://ftp.freedesktop.org/pub/mesa/glu/' +description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """ + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/'] +sources = ['glu-%(version)s.tar.bz2'] + +dependencies = [ + ('Mesa', '17.0.2'), +] + +sanity_check_paths = { + 'files': ['lib/libGLU.so.1'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb new file mode 100644 index 0000000000..854d135004 --- /dev/null +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libdrm' +version = '2.4.76' + +homepage = 'http://dri.freedesktop.org' +description = """Direct Rendering Manager runtime library.""" + +source_urls = ['http://dri.freedesktop.org/libdrm/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2017a'} + +dependencies = [ + ('X11', '20170314'), +] + +sanity_check_paths = { + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], + 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..78ada08ea7 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,24 @@ +name = 'libxml2' +version = '2.9.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.11'), + ('XZ', '5.2.3'), + ('Python', '2.7.13'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..c503189159 --- /dev/null +++ b/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,22 @@ +easyblock = 'PythonPackage' + +name = 'Mako' +version = '1.0.6' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.makotemplates.org' +description = """A super-fast templating language that borrows the best ideas from the existing templating languages""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': ['bin/mako-render'], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s.egg'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb new file mode 100644 index 0000000000..c658de768c --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb @@ -0,0 +1,66 @@ +# the purpose of the easyconfig is to build a Mesa for software rendering, +# not hardware rendering. This means you want at least SSE4.2. We build: +# - llvmpipe: the high-performance Gallium LLVM driver +# - swr: Intel's OpenSWR +# it will try to use the llvmpipe by default. It you want swr, do: +# GALLIUM_DRIVER=swr + +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '17.0.2' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +# swr detects and builds parts specific for AVX and AVX2. If we use +# -xHost, this always gets overwritten and will fail. +toolchainopts = {'optarch': False} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [ + 'https://mesa.freedesktop.org/archive/', + 'https://mesa.freedesktop.org/archive/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] +patches = ['Mesa-%(version)s_fix-strip-llvm-flags.patch'] + +builddependencies = [ + ('flex', '2.6.3'), + ('Bison', '3.0.4'), + ('Autotools', '20150215'), + ('pkg-config', '0.29.1'), + ('Mako', '1.0.6', '-Python-2.7.13'), + ('libxml2', '2.9.4', '-Python-2.7.13'), +] + +dependencies = [ + ('zlib', '1.2.11'), + ('nettle', '3.3'), + ('libdrm', '2.4.76'), + ('LLVM', '4.0.0'), + ('X11', '20170314'), +] + +# GLU is not part anymore of Mesa package! +configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" +configopts += " --disable-gbm --disable-driglx-direct --with-gallium-drivers='swrast,swr' --disable-egl" +configopts += " --with-osmesa-bits=32 --enable-texture-float --enable-llvm-shared-libs " + +buildopts = 'V=1' + +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, + 'lib/libGLESv1_CM.%s' % SHLIB_EXT, 'lib/libGLESv2.%s' % SHLIB_EXT, + 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glx.h', 'include/GL/osmesa.h', + 'include/GL/gl.h', 'include/GL/glxext.h', + 'include/GL/glx_mangle.h', 'include/GLES/gl.h', + 'include/GLES2/gl2.h', 'include/GLES3/gl3.h'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb b/easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb new file mode 100644 index 0000000000..f720881211 --- /dev/null +++ b/easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'nettle' +version = '3.3' + +homepage = 'http://www.lysator.liu.se/~nisse/nettle/' +description = """Nettle is a cryptographic library that is designed to fit easily + in more or less any context: In crypto toolkits for object-oriented + languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, + or even in kernel space.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('GMP', '6.1.2'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], + 'dirs': ['include/nettle'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb new file mode 100644 index 0000000000..cdea33d837 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.40' + +homepage = 'http://www.pcre.org/' +description = """The PCRE library is a set of functions that implement regular expression pattern matching using + the same syntax and semantics as Perl 5.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb new file mode 100644 index 0000000000..0c8d002a4f --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb @@ -0,0 +1,29 @@ +name = 'Qt' +version = '4.8.7' + +homepage = 'http://qt.io/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'cstd': 'gnu++98'} + +source_urls = [ + 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', + 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-%(version)s_phonon-export.patch'] + +builddependencies = [ + ('pkg-config', '0.29.2'), +] + +dependencies = [ + ('GLib', '2.52.0'), + ('libpng', '1.6.29'), + ('X11', '20170314'), + ('libGLU', '9.0.0'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb new file mode 100644 index 0000000000..2f535a4c3c --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.29.2' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From 45f126c30f716df0bb12f4e3b5685dcc095239f0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 14:10:51 +0200 Subject: [PATCH 374/845] adding easyconfigs: Eigen-3.3.4.eb --- easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb new file mode 100644 index 0000000000..cb9b1ad328 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb @@ -0,0 +1,17 @@ +name = 'Eigen' +version = '3.3.4' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' + +description = """ + Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] +checksums = ['dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6'] + +moduleclass = 'math' -- GitLab From 8afe68f7786e32cc9e033dcda6a54165d661479f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 14:12:16 +0200 Subject: [PATCH 375/845] adding easyconfigs: MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb --- ...MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..aa0e747a56 --- /dev/null +++ b/easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,26 @@ +name = 'MRtrix' +version = '3.0_RC2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.brain.org.au/software/index.html#mrtrix' +description = """MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner + robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'cstd': 'c++11'} + +source_urls = ['https://github.com/MRtrix3/mrtrix3/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['88187f3498f4ee215b2a51d16acb7f2e6c33217e72403a7d48c2ec5da6e2218b'] + +builddependencies = [ + ('Eigen', '3.3.4', '', True), +] +dependencies = [ + ('zlib', '1.2.11'), + ('Python', '2.7.13'), + ('Mesa', '17.0.2'), + ('Qt', '4.8.7'), +] + +moduleclass = 'bio' -- GitLab From 25bfdc0abccfcc6042e694ff198ae8fff567669e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 14:23:02 +0200 Subject: [PATCH 376/845] stick to GCCcore toolchain for libxml2 dep for Mesa --- .../libxml2-2.9.4-foss-2017a-Python-2.7.13.eb | 24 ------------------- .../m/Mesa/Mesa-17.0.2-foss-2017a.eb | 2 +- .../m/Mesa/Mesa-17.0.2-intel-2017a.eb | 2 +- 3 files changed, 2 insertions(+), 26 deletions(-) delete mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb deleted file mode 100644 index 78ada08ea7..0000000000 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-foss-2017a-Python-2.7.13.eb +++ /dev/null @@ -1,24 +0,0 @@ -name = 'libxml2' -version = '2.9.4' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2017a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('zlib', '1.2.11'), - ('XZ', '5.2.3'), - ('Python', '2.7.13'), -] - -moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb index c658de768c..57eb46100f 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb @@ -34,7 +34,7 @@ builddependencies = [ ('Autotools', '20150215'), ('pkg-config', '0.29.1'), ('Mako', '1.0.6', '-Python-2.7.13'), - ('libxml2', '2.9.4', '-Python-2.7.13'), + ('libxml2', '2.9.4'), ] dependencies = [ diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb index 8bb12d31a3..89dd517431 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb @@ -34,7 +34,7 @@ builddependencies = [ ('Autotools', '20150215'), ('pkg-config', '0.29.1'), ('Mako', '1.0.6', '-Python-2.7.13'), - ('libxml2', '2.9.4', '-Python-2.7.13'), + ('libxml2', '2.9.4'), ] dependencies = [ -- GitLab From 8c10f8aff23bfb741fbcb82ffff2f721e50a8bfe Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 15:22:09 +0200 Subject: [PATCH 377/845] stick to GCCcore toolchain for libdrm, nettle, PCRE, util-linux + add SHA256 checksums in touched easyconfigs --- .../g/GLib/GLib-2.52.0-foss-2017a.eb | 3 +++ .../l/libGLU/libGLU-9.0.0-foss-2017a.eb | 3 +++ ...017a.eb => libdrm-2.4.76-GCCcore-6.3.0.eb} | 11 +++++++++-- .../Mako-1.0.6-foss-2017a-Python-2.7.13.eb | 3 +++ .../m/Mesa/Mesa-17.0.2-foss-2017a.eb | 6 +++++- .../m/Mesa/Mesa-17.0.2-intel-2017a.eb | 6 +++++- ...s-2017a.eb => nettle-3.3-GCCcore-6.3.0.eb} | 10 +++++++++- ...ss-2017a.eb => PCRE-8.40-GCCcore-6.3.0.eb} | 10 +++++++++- .../easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb | 4 ++++ ....eb => util-linux-2.29.2-GCCcore-6.3.0.eb} | 19 +++++++++++++------ 10 files changed, 63 insertions(+), 12 deletions(-) rename easybuild/easyconfigs/l/libdrm/{libdrm-2.4.76-foss-2017a.eb => libdrm-2.4.76-GCCcore-6.3.0.eb} (67%) rename easybuild/easyconfigs/n/nettle/{nettle-3.3-foss-2017a.eb => nettle-3.3-GCCcore-6.3.0.eb} (75%) rename easybuild/easyconfigs/p/PCRE/{PCRE-8.40-foss-2017a.eb => PCRE-8.40-GCCcore-6.3.0.eb} (60%) rename easybuild/easyconfigs/u/util-linux/{util-linux-2.29.2-foss-2017a.eb => util-linux-2.29.2-GCCcore-6.3.0.eb} (84%) diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb index 46fb65d7e5..52fb7942b9 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb @@ -11,6 +11,9 @@ toolchainopts = {'pic': True} source_urls = [FTPGNOME_SOURCE] sources = [SOURCELOWER_TAR_XZ] +checksums = [ + '4578e3e077b1b978cafeec8d28b676c680aba0c0475923874c4c993403df311a', # glib-2.52.0.tar.xz +] dependencies = [ ('libffi', '3.2.1'), diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb index ece6ffd732..9619bd114d 100644 --- a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb @@ -11,6 +11,9 @@ toolchainopts = {'pic': True} source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/'] sources = ['glu-%(version)s.tar.bz2'] +checksums = [ + '1f7ad0d379a722fcbd303aa5650c6d7d5544fde83196b42a73d1193568a4df12', # glu-9.0.0.tar.bz2 +] dependencies = [ ('Mesa', '17.0.2'), diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-GCCcore-6.3.0.eb similarity index 67% rename from easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb rename to easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-GCCcore-6.3.0.eb index 854d135004..d6e3c7e9a1 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-foss-2017a.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-GCCcore-6.3.0.eb @@ -6,14 +6,21 @@ version = '2.4.76' homepage = 'http://dri.freedesktop.org' description = """Direct Rendering Manager runtime library.""" +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'foss', 'version': '2017a'} +checksums = [ + '6e3fb50d7500acf06f7eed44d5b1d33cda26aef7f5ae6667ddcc626b435c2531', # libdrm-2.4.76.tar.gz +] dependencies = [ ('X11', '20170314'), ] +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), +] sanity_check_paths = { 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, diff --git a/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb index c503189159..0f724f7b47 100644 --- a/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb @@ -11,6 +11,9 @@ toolchain = {'name': 'foss', 'version': '2017a'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = [ + '48559ebd872a8e77f92005884b3d88ffae552812cdf17db6768e5c3be5ebbe0d', # Mako-1.0.6.tar.gz +] dependencies = [('Python', '2.7.13')] diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb index 57eb46100f..bf4cca33d3 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb @@ -19,14 +19,18 @@ toolchain = {'name': 'foss', 'version': '2017a'} # -xHost, this always gets overwritten and will fail. toolchainopts = {'optarch': False} -sources = [SOURCELOWER_TAR_XZ] source_urls = [ 'https://mesa.freedesktop.org/archive/', 'https://mesa.freedesktop.org/archive/%(version)s', 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', ] +sources = [SOURCELOWER_TAR_XZ] patches = ['Mesa-%(version)s_fix-strip-llvm-flags.patch'] +checksums = [ + 'f8f191f909e01e65de38d5bdea5fb057f21649a3aed20948be02348e77a689d4', # mesa-17.0.2.tar.xz + '3edd64bc2a42b9065cfb86e872ba7e8a7c74144f7a867c2b5ec62d16078afb36', # Mesa-17.0.2_fix-strip-llvm-flags.patch +] builddependencies = [ ('flex', '2.6.3'), diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb index 89dd517431..fb11d4be67 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb @@ -19,14 +19,18 @@ toolchain = {'name': 'intel', 'version': '2017a'} # -xHost, this always gets overwritten and will fail. toolchainopts = {'optarch': False} -sources = [SOURCELOWER_TAR_XZ] source_urls = [ 'https://mesa.freedesktop.org/archive/', 'https://mesa.freedesktop.org/archive/%(version)s', 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', ] +sources = [SOURCELOWER_TAR_XZ] patches = ['Mesa-%(version)s_fix-strip-llvm-flags.patch'] +checksums = [ + 'f8f191f909e01e65de38d5bdea5fb057f21649a3aed20948be02348e77a689d4', # mesa-17.0.2.tar.xz + '3edd64bc2a42b9065cfb86e872ba7e8a7c74144f7a867c2b5ec62d16078afb36', # Mesa-17.0.2_fix-strip-llvm-flags.patch +] builddependencies = [ ('flex', '2.6.3'), diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.3.0.eb similarity index 75% rename from easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb rename to easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.3.0.eb index f720881211..29bb670c94 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.3-foss-2017a.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.3.0.eb @@ -9,10 +9,18 @@ description = """Nettle is a cryptographic library that is designed to fit easil languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.""" -toolchain = {'name': 'foss', 'version': '2017a'} +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = [ + '46942627d5d0ca11720fec18d81fc38f7ef837ea4197c1f630e71ce0d470b11e', # nettle-3.3.tar.gz +] + +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), +] dependencies = [ ('GMP', '6.1.2'), diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-GCCcore-6.3.0.eb similarity index 60% rename from easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb rename to easybuild/easyconfigs/p/PCRE/PCRE-8.40-GCCcore-6.3.0.eb index cdea33d837..9dc9830554 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.40-foss-2017a.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-GCCcore-6.3.0.eb @@ -7,11 +7,19 @@ homepage = 'http://www.pcre.org/' description = """The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.""" -toolchain = {'name': 'foss', 'version': '2017a'} +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} toolchainopts = {'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = [ + '1d75ce90ea3f81ee080cdc04e68c9c25a9fb984861a0618be7bbf676b18eda3e', # pcre-8.40.tar.gz +] + +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), +] configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb index 0c8d002a4f..71fe074ee9 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb @@ -12,6 +12,10 @@ source_urls = [ 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] +checksums = [ + 'e2882295097e47fe089f8ac741a95fef47e0a73a3f3cdf21b56990638f626ea0', # qt-everywhere-opensource-src-4.8.7.tar.gz + '3853c87c33695bfa57e207ffb0d94cb2565aa462eccdf44d2b2804fd44ecbad6', # Qt-4.8.7_phonon-export.patch +] patches = ['Qt-%(version)s_phonon-export.patch'] diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb similarity index 84% rename from easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb rename to easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb index 2f535a4c3c..5bf5c2a724 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-foss-2017a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb @@ -6,10 +6,22 @@ version = '2.29.2' homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' description = """Set of Linux utilities""" -toolchain = {'name': 'foss', 'version': '2017a'} +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = [ + '29ccdf91d2c3245dc705f0ad3bf729ac41d8adcdbeff914e797c552ecb04a4c7', # util-linux-2.29.2.tar.gz +] + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] # disable account related utilities (they need OS dependant pam-devel files) # disable wall and friends (requires group changing permissions for install user) @@ -23,11 +35,6 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [ - ('ncurses', '6.0'), - ('zlib', '1.2.11'), -] - sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], -- GitLab From b4c154bb6ff61b86d0a1737fd06f4c9a40998fe0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 16:54:26 +0200 Subject: [PATCH 378/845] add comment on use of non-dummy toolchain for Eigen --- easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb index cb9b1ad328..b82e85a0ae 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb @@ -8,6 +8,7 @@ description = """ matrices, vectors, numerical solvers, and related algorithms. """ +# only includes header files, so no need for a non-dummy toolchain toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] -- GitLab From ba4309288352b822b4ea059a7819634a90401e8f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 19:01:41 +0200 Subject: [PATCH 379/845] adding easyconfigs: GCC-7.2.0-2.29.eb --- .../b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb | 28 ++++++++++ .../b/binutils/binutils-2.29-GCCcore-7.2.0.eb | 22 ++++++++ .../easyconfigs/b/binutils/binutils-2.29.eb | 21 ++++++++ .../f/flex/flex-2.6.4-GCCcore-7.2.0.eb | 30 +++++++++++ easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb | 25 +++++++++ .../easyconfigs/g/GCCcore/GCCcore-7.2.0.eb | 53 +++++++++++++++++++ .../help2man/help2man-1.47.4-GCCcore-7.2.0.eb | 25 +++++++++ .../m/M4/M4-1.4.18-GCCcore-7.2.0.eb | 29 ++++++++++ .../z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb | 26 +++++++++ 9 files changed, 259 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.29.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb create mode 100644 easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb create mode 100644 easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb new file mode 100644 index 0000000000..0b2a1818c2 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] + +builddependencies = [ + ('M4', '1.4.18'), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.29', '', True), +] + + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb new file mode 100644 index 0000000000..2e11b1cadf --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb @@ -0,0 +1,22 @@ +name = 'binutils' +version = '2.29' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] +checksums = ['172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4'] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), + # use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils + ('binutils', version, '', True) +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.29.eb b/easybuild/easyconfigs/b/binutils/binutils-2.29.eb new file mode 100644 index 0000000000..6efb559b8a --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.29.eb @@ -0,0 +1,21 @@ +name = 'binutils' +version = '2.29' + +homepage = 'http://directory.fsf.org/project/binutils/' + +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4'] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb new file mode 100644 index 0000000000..9df6e33418 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb @@ -0,0 +1,30 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.29', '', True), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb b/easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb new file mode 100644 index 0000000000..8e1f8bd616 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb @@ -0,0 +1,25 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = '7.2.0' + +binutilsver = '2.29' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore, which was built on top of (dummy-built) binutils + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb new file mode 100644 index 0000000000..f12a1c7b74 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb @@ -0,0 +1,53 @@ +easyblock = 'EB_GCC' + +name = 'GCCcore' +version = '7.2.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.5' + +source_urls = [ + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies + 'http://isl.gforge.inria.fr/', # original HTTP source for ISL +] +sources = [ + 'gcc-%(version)s.tar.gz', + 'gmp-6.1.2.tar.bz2', + 'mpfr-%s.tar.bz2' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.16.1.tar.bz2', +] +patches = [ + ('mpfr-%s-allpatches-20170801.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), + 'GCCcore-6.2.0-fix-find-isl.patch', +] +checksums = [ + '0153a003d3b433459336a91610cca2995ee0fb3d71131bd72555f2231a6efcfc', # gcc-7.2.0.tar.gz + '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 + 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.bz2 + '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz + '412538bb65c799ac98e17e8cfcdacbb257a57362acfaaff254b0fcae970126d2', # isl-0.16.1.tar.bz2 + '62f11d5750a3a2c76f6b33ad581b15c75a0292a575107cabdd8d1f0ccb4e20a1', # mpfr-3.1.5-allpatches-20170801.patch + '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68', # GCCcore-6.2.0-fix-find-isl.patch +] + +builddependencies = [ + ('M4', '1.4.18'), + ('binutils', '2.29'), +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb new file mode 100644 index 0000000000..63e4b751a1 --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.4' + +homepage = 'https://www.gnu.org/software/help2man/' +description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] + +builddependencies = [ + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.29', '', True), +] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb new file mode 100644 index 0000000000..4605723e36 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.29', '', True)] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ['bin/m4'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb new file mode 100644 index 0000000000..016a24fff2 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://zlib.net/fossils'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.29', '', True)] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From c2cbcf3e1644b9573cef726da3d1b387225cc6aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 16 Aug 2017 19:08:01 +0200 Subject: [PATCH 380/845] add missing patch file required by GCCcore-7.2.0.eb --- .../mpfr-3.1.5-allpatches-20170801.patch | 785 ++++++++++++++++++ 1 file changed, 785 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch diff --git a/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch new file mode 100644 index 0000000000..fe26596b10 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch @@ -0,0 +1,785 @@ +# MPFR v3.1.5 patch dated 2017-06-06 +# downloaded via https://gforge.inria.fr/frs/?group_id=136 +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-15 08:35:46.476430238 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-15 08:35:46.544430346 +0000 +@@ -0,0 +1 @@ ++vasprintf +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-15 08:35:46.544430346 +0000 +@@ -1 +1 @@ +-3.1.5 ++3.1.5-p1 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5" ++#define MPFR_VERSION_STRING "3.1.5-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1593,7 +1593,7 @@ + } + else if (spec.spec == 'f' || spec.spec == 'F') + { +- if (spec.prec == -1) ++ if (spec.prec < 0) + spec.prec = 6; + if (regular_fg (np, p, spec, NULL) == -1) + goto error; +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-15 08:35:46.544430346 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5"; ++ return "3.1.5-p1"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1251,6 +1251,25 @@ + check_emin_aux (MPFR_EMIN_MIN); + } + ++static void ++test20161214 (void) ++{ ++ mpfr_t x; ++ char buf[32]; ++ const char s[] = "0x0.fffffffffffff8p+1024"; ++ int r; ++ ++ mpfr_init2 (x, 64); ++ mpfr_set_str (x, s, 16, MPFR_RNDN); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", -2, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN + 1, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN, x); ++ MPFR_ASSERTN(r == 316); ++ mpfr_clear (x); ++} ++ + int + main (int argc, char **argv) + { +@@ -1271,6 +1290,7 @@ + mixed (); + check_emax (); + check_emin (); ++ test20161214 (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + #if MPFR_LCONV_DPTS +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-19 22:11:17.022676737 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-19 22:11:17.094676820 +0000 +@@ -0,0 +1 @@ ++strtofr +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-19 22:11:17.094676820 +0000 +@@ -1 +1 @@ +-3.1.5-p1 ++3.1.5-p2 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p1" ++#define MPFR_VERSION_STRING "3.1.5-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/strtofr.c mpfr-3.1.5-b/src/strtofr.c +--- mpfr-3.1.5-a/src/strtofr.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/strtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -743,11 +743,14 @@ + of the pstr_size most significant digits of pstr->mant, with + equality in case exact is non-zero. */ + +- /* test if rounding is possible, and if so exit the loop */ +- if (exact || mpfr_can_round_raw (result, ysize, +- (pstr->negative) ? -1 : 1, +- ysize_bits - err - 1, +- MPFR_RNDN, rnd, MPFR_PREC(x))) ++ /* test if rounding is possible, and if so exit the loop. ++ Note: we also need to be able to determine the correct ternary value, ++ thus we use the MPFR_PREC(x) + (rnd == MPFR_RNDN) trick. ++ For example if result = xxx...xxx111...111 and rnd = RNDN, ++ then we know the correct rounding is xxx...xx(x+1), but we cannot know ++ the correct ternary value. */ ++ if (exact || mpfr_round_p (result, ysize, ysize_bits - err - 1, ++ MPFR_PREC(x) + (rnd == MPFR_RNDN))) + break; + + next_loop: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-19 22:11:17.094676820 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p1"; ++ return "3.1.5-p2"; + } +diff -Naurd mpfr-3.1.5-a/tests/tstrtofr.c mpfr-3.1.5-b/tests/tstrtofr.c +--- mpfr-3.1.5-a/tests/tstrtofr.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tstrtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -1191,6 +1191,24 @@ + mpfr_clears (e, x1, x2, (mpfr_ptr) 0); + } + ++/* Note: the number is 5^47/2^9. */ ++static void ++bug20161217 (void) ++{ ++ mpfr_t fp, z; ++ static const char * num = "0.1387778780781445675529539585113525390625e31"; ++ int inex; ++ ++ mpfr_init2 (fp, 110); ++ mpfr_init2 (z, 110); ++ inex = mpfr_strtofr (fp, num, NULL, 10, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ mpfr_set_str_binary (z, "10001100001000010011110110011101101001010000001011011110010001010100010100100110111101000010001011001100001101E-9"); ++ MPFR_ASSERTN(mpfr_equal_p (fp, z)); ++ mpfr_clear (fp); ++ mpfr_clear (z); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -1205,6 +1223,7 @@ + test20100310 (); + bug20120814 (); + bug20120829 (); ++ bug20161217 (); + + tests_end_mpfr (); + return 0; +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:21:17.580843571 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:21:17.604843293 +0000 +@@ -0,0 +1 @@ ++ret-macro +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:21:17.604843293 +0000 +@@ -1 +1 @@ +-3.1.5-p2 ++3.1.5-p3 +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 +@@ -873,7 +873,7 @@ + following two macros, unless the flag comes from another function + returning the ternary inexact value */ + #define MPFR_RET(I) return \ +- (I) ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 ++ (I) != 0 ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 + #define MPFR_RET_NAN return (__gmpfr_flags |= MPFR_FLAGS_NAN), 0 + + #define MPFR_SET_ERANGE() (__gmpfr_flags |= MPFR_FLAGS_ERANGE) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p2" ++#define MPFR_VERSION_STRING "3.1.5-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:21:17.604843293 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p2"; ++ return "3.1.5-p3"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:50:30.708438500 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:50:30.736438175 +0000 +@@ -0,0 +1 @@ ++tests-buffer-size +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:50:30.736438175 +0000 +@@ -1 +1 @@ +-3.1.5-p3 ++3.1.5-p4 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p3" ++#define MPFR_VERSION_STRING "3.1.5-p4" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:50:30.736438175 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p3"; ++ return "3.1.5-p4"; + } +diff -Naurd mpfr-3.1.5-a/tests/tl2b.c mpfr-3.1.5-b/tests/tl2b.c +--- mpfr-3.1.5-a/tests/tl2b.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tl2b.c 2017-06-06 19:50:30.724438314 +0000 +@@ -83,7 +83,7 @@ + mpfr_srcptr t; + int beta, i; + int error = 0; +- char buffer[30]; ++ char buffer[256]; /* larger than needed, for maintainability */ + + for (beta = 2; beta <= BASE_MAX; beta++) + { +diff -Naurd mpfr-3.1.5-a/tests/tpow_all.c mpfr-3.1.5-b/tests/tpow_all.c +--- mpfr-3.1.5-a/tests/tpow_all.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tpow_all.c 2017-06-06 19:50:30.724438314 +0000 +@@ -498,7 +498,7 @@ + for (i = 0; i <= 12; i++) + { + unsigned int flags = 0; +- char sy[16]; ++ char sy[256]; /* larger than needed, for maintainability */ + + /* Test 2^(emin - i/4). + * --> Underflow iff i > 4. +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:57:01.947910247 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:57:01.971909970 +0000 +@@ -0,0 +1 @@ ++vasprintf-overflow-check +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:57:01.971909970 +0000 +@@ -1 +1 @@ +-3.1.5-p4 ++3.1.5-p5 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p4" ++#define MPFR_VERSION_STRING "3.1.5-p5" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 +@@ -1452,7 +1452,7 @@ + struct printf_spec spec) + { + char *str; +- long total; ++ unsigned int total; /* can hold the sum of two non-negative int's + 1 */ + int uppercase; + + /* WARNING: left justification means right space padding */ +@@ -1645,43 +1645,43 @@ + + /* compute the number of characters to be written verifying it is not too + much */ ++ ++#define INCR_TOTAL(v) \ ++ do { \ ++ MPFR_ASSERTD ((v) >= 0); \ ++ if (MPFR_UNLIKELY ((v) > INT_MAX)) \ ++ goto error; \ ++ total += (v); \ ++ if (MPFR_UNLIKELY (total > INT_MAX)) \ ++ goto error; \ ++ } while (0) ++ + total = np->sign ? 1 : 0; +- total += np->prefix_size; +- total += np->ip_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->ip_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->prefix_size); ++ INCR_TOTAL (np->ip_size); ++ INCR_TOTAL (np->ip_trailing_zeros); ++ MPFR_ASSERTD (np->ip_size + np->ip_trailing_zeros >= 1); + if (np->thousands_sep) + /* ' flag, style f and the thousands separator in current locale is not + reduced to the null character */ +- total += (np->ip_size + np->ip_trailing_zeros) / 3; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL ((np->ip_size + np->ip_trailing_zeros - 1) / 3); + if (np->point) + ++total; +- total += np->fp_leading_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->exp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->fp_leading_zeros); ++ INCR_TOTAL (np->fp_size); ++ INCR_TOTAL (np->fp_trailing_zeros); ++ INCR_TOTAL (np->exp_size); + + if (spec.width > total) + /* pad with spaces or zeros depending on np->pad_type */ + { + np->pad_size = spec.width - total; + total += np->pad_size; /* here total == spec.width, +- so 0 < total < INT_MAX */ ++ so 0 < total <= INT_MAX */ ++ MPFR_ASSERTD (total == spec.width); + } + ++ MPFR_ASSERTD (total > 0 && total <= INT_MAX); + return total; + + error: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:57:01.971909970 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p4"; ++ return "3.1.5-p5"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:17:02.489704106 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:17:02.513703814 +0000 +@@ -0,0 +1 @@ ++printf-errno +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:17:02.513703814 +0000 +@@ -1 +1 @@ +-3.1.5-p5 ++3.1.5-p6 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p5" ++#define MPFR_VERSION_STRING "3.1.5-p6" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/printf.c mpfr-3.1.5-b/src/printf.c +--- mpfr-3.1.5-a/src/printf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/printf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -40,7 +40,6 @@ + # endif /* HAVE___VA_COPY */ + #endif /* HAVE_VA_COPY */ + +-#include + #include "mpfr-impl.h" + + #ifdef _MPFR_H_HAVE_FILE +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -52,6 +52,8 @@ + #include /* for ptrdiff_t */ + #endif + ++#include ++ + #define MPFR_NEED_LONGLONG_H + #include "mpfr-intmax.h" + #include "mpfr-impl.h" +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:17:02.513703814 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p5"; ++ return "3.1.5-p6"; + } +diff -Naurd mpfr-3.1.5-a/tests/tprintf.c mpfr-3.1.5-b/tests/tprintf.c +--- mpfr-3.1.5-a/tests/tprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -26,6 +26,7 @@ + #include + #include + #include ++#include + + #include "mpfr-intmax.h" + #include "mpfr-test.h" +@@ -109,6 +110,33 @@ + } + + static void ++check_vprintf_overflow (const char *fmt, ...) ++{ ++ va_list ap; ++ int r, e; ++ ++ va_start (ap, fmt); ++ errno = 0; ++ r = mpfr_vprintf (fmt, ap); ++ e = errno; ++ va_end (ap); ++ ++ if (r != -1 ++#ifdef EOVERFLOW ++ || e != EOVERFLOW ++#endif ++ ) ++ { ++ putchar ('\n'); ++ fprintf (stderr, "Error in mpfr_vprintf(\"%s\", ...)\n" ++ "Got r = %d, errno = %d\n", fmt, r, e); ++ exit (1); ++ } ++ ++ putchar ('\n'); ++} ++ ++static void + check_invalid_format (void) + { + int i = 0; +@@ -167,8 +195,8 @@ + mpfr_set_ui (x, 1, MPFR_RNDN); + mpfr_nextabove (x); + +- check_vprintf_failure ("%Rb", x); +- check_vprintf_failure ("%RA %RA %Ra %Ra", x, x, x, x); ++ check_vprintf_overflow ("%Rb", x); ++ check_vprintf_overflow ("%RA %RA %Ra %Ra", x, x, x, x); + + mpfr_clear (x); + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:24:00.580702002 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:24:00.604701719 +0000 +@@ -0,0 +1 @@ ++tsprintf-setlocale +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:24:00.604701719 +0000 +@@ -1 +1 @@ +-3.1.5-p6 ++3.1.5-p7 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p6" ++#define MPFR_VERSION_STRING "3.1.5-p7" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:24:00.604701719 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p6"; ++ return "3.1.5-p7"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2017-06-06 20:24:00.596701813 +0000 +@@ -1273,13 +1273,12 @@ + int + main (int argc, char **argv) + { +- char *locale; + + tests_start_mpfr (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + /* currently, we just check with 'C' locale */ +- locale = setlocale (LC_ALL, "C"); ++ setlocale (LC_ALL, "C"); + #endif + + bug20111102 (); +@@ -1297,7 +1296,7 @@ + locale_da_DK (); + /* Avoid a warning by doing the setlocale outside of this #if */ + #endif +- setlocale (LC_ALL, locale); ++ setlocale (LC_ALL, "C"); + #endif + + if (getenv ("MPFR_CHECK_LIBC_PRINTF")) +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:31:35.919341495 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:31:35.943341213 +0000 +@@ -0,0 +1 @@ ++mpf-compat-signed +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:31:35.943341213 +0000 +@@ -1 +1 @@ +-3.1.5-p7 ++3.1.5-p8 +diff -Naurd mpfr-3.1.5-a/src/mpf2mpfr.h mpfr-3.1.5-b/src/mpf2mpfr.h +--- mpfr-3.1.5-a/src/mpf2mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpf2mpfr.h 2017-06-06 20:31:35.931341353 +0000 +@@ -93,15 +93,15 @@ + #undef mpf_div_2exp + #define mpf_div_2exp(x,y,z) mpfr_div_2exp(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_fits_slong_p +-#define mpf_fits_slong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_slong_p(x) mpfr_fits_slong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ulong_p + #define mpf_fits_ulong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sint_p +-#define mpf_fits_sint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sint_p(x) mpfr_fits_sint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_uint_p + #define mpf_fits_uint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sshort_p +-#define mpf_fits_sshort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sshort_p(x) mpfr_fits_sshort_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ushort_p + #define mpf_fits_ushort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) + #undef mpf_get_str +@@ -113,7 +113,7 @@ + #undef mpf_get_ui + #define mpf_get_ui(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) + #undef mpf_get_si +-#define mpf_get_si(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) ++#define mpf_get_si(x) mpfr_get_si(x,MPFR_DEFAULT_RND) + #undef mpf_inp_str + #define mpf_inp_str(x,y,z) mpfr_inp_str(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_set_str +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 20:31:35.931341353 +0000 +@@ -342,11 +342,15 @@ + #define MPFR_FLAGS_DIVBY0 32 + #define MPFR_FLAGS_ALL 63 + +-/* Replace some common functions for direct access to the global vars */ +-#define mpfr_get_emin() (__gmpfr_emin + 0) +-#define mpfr_get_emax() (__gmpfr_emax + 0) +-#define mpfr_get_default_rounding_mode() (__gmpfr_default_rounding_mode + 0) +-#define mpfr_get_default_prec() (__gmpfr_default_fp_bit_precision + 0) ++/* Replace some common functions for direct access to the global vars. ++ The casts prevent these macros from being used as a lvalue (and this ++ method makes sure that the expressions have the correct type). */ ++#define mpfr_get_emin() ((mpfr_exp_t) __gmpfr_emin) ++#define mpfr_get_emax() ((mpfr_exp_t) __gmpfr_emax) ++#define mpfr_get_default_rounding_mode() \ ++ ((mpfr_rnd_t) __gmpfr_default_rounding_mode) ++#define mpfr_get_default_prec() \ ++ ((mpfr_prec_t) __gmpfr_default_fp_bit_precision) + + #define mpfr_clear_flags() \ + ((void) (__gmpfr_flags = 0)) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:31:35.939341259 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p7" ++#define MPFR_VERSION_STRING "3.1.5-p8" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:31:35.943341213 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p7"; ++ return "3.1.5-p8"; + } +diff -Naurd mpfr-3.1.5-a/tests/mpf_compat.h mpfr-3.1.5-b/tests/mpf_compat.h +--- mpfr-3.1.5-a/tests/mpf_compat.h 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/mpf_compat.h 2017-06-06 20:31:35.931341353 +0000 +@@ -20,16 +20,10 @@ + http://www.gnu.org/licenses/ or write to the Free Software Foundation, Inc., + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. */ + +-#if defined (__cplusplus) +-#include +-#else +-#include +-#endif + #include +-#include + +-#include "gmp.h" +-#include "mpfr.h" ++#include "mpfr-impl.h" ++ + #ifdef MPFR + #include "mpf2mpfr.h" + #endif +@@ -228,6 +222,16 @@ + exit (1); + } + ++ /* non-regression tests for bugs fixed in revision 11565 */ ++ mpf_set_si (x, -1); ++ MPFR_ASSERTN(mpf_fits_ulong_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_slong_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_uint_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sint_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_ushort_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sshort_p (x) != 0); ++ MPFR_ASSERTN(mpf_get_si (x) == -1); ++ + /* clear all variables */ + mpf_clear (y); + mpf_clear (x); +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-07-21 09:17:42.675157685 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-07-21 09:17:42.699157421 +0000 +@@ -0,0 +1 @@ ++sincos-overflow +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:31:35.943341213 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-07-21 09:17:42.699157421 +0000 +@@ -1 +1 @@ +-3.1.5-p8 ++3.1.5-p9 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:31:35.939341259 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-07-21 09:17:42.699157421 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p8" ++#define MPFR_VERSION_STRING "3.1.5-p9" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/sin_cos.c mpfr-3.1.5-b/src/sin_cos.c +--- mpfr-3.1.5-a/src/sin_cos.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/sin_cos.c 2017-07-21 09:17:42.691157510 +0000 +@@ -350,10 +350,12 @@ + which reduces to T[k] = (2*i+2)*(2*i+3)*2^r-pp, + Q[k] = (2*i)*(2*i+1)*(2*i+2)*(2*i+3). */ + log2_nb_terms[k] = 1; +- mpz_set_ui (Q[k], (2 * i + 2) * (2 * i + 3)); ++ mpz_set_ui (Q[k], 2 * i + 2); ++ mpz_mul_ui (Q[k], Q[k], 2 * i + 3); + mpz_mul_2exp (T[k], Q[k], r); + mpz_sub (T[k], T[k], pp); +- mpz_mul_ui (Q[k], Q[k], (2 * i) * (2 * i + 1)); ++ mpz_mul_ui (Q[k], Q[k], 2 * i); ++ mpz_mul_ui (Q[k], Q[k], 2 * i + 1); + /* the next term of the series is divided by Q[k] and multiplied + by pp^2/2^(2r), thus the mult. factor < 1/2^mult[k] */ + mult[k] = mpz_sizeinbase (Q[k], 2) + 2 * r - size_ptoj[1] - 1; +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:31:35.943341213 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-07-21 09:17:42.699157421 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p8"; ++ return "3.1.5-p9"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-08-01 11:59:56.775365596 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-08-01 11:59:56.803365172 +0000 +@@ -0,0 +1 @@ ++mpf-compat-header +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-07-21 09:17:42.699157421 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-08-01 11:59:56.803365172 +0000 +@@ -1 +1 @@ +-3.1.5-p9 ++3.1.5-p10 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-07-21 09:17:42.699157421 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-08-01 11:59:56.799365233 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p9" ++#define MPFR_VERSION_STRING "3.1.5-p10" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-07-21 09:17:42.699157421 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-08-01 11:59:56.803365172 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p9"; ++ return "3.1.5-p10"; + } +diff -Naurd mpfr-3.1.5-a/tests/mpf_compat.h mpfr-3.1.5-b/tests/mpf_compat.h +--- mpfr-3.1.5-a/tests/mpf_compat.h 2017-06-06 20:31:35.931341353 +0000 ++++ mpfr-3.1.5-b/tests/mpf_compat.h 2017-08-01 11:59:56.791365354 +0000 +@@ -22,7 +22,7 @@ + + #include + +-#include "mpfr-impl.h" ++#include "mpfr-test.h" + + #ifdef MPFR + #include "mpf2mpfr.h" -- GitLab From 8d8fca9a350521b543216f8709fe7cb481238b75 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 17 Aug 2017 10:19:27 +0200 Subject: [PATCH 381/845] add SC3 extension into bundle for Bioconductor 3.5 (+ dep extesions in R easyconfig) --- .../R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb | 1 + easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 2 ++ 2 files changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb index b8dbe2076f..43f571de80 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb @@ -160,6 +160,7 @@ exts_list = [ ('tximport', '1.4.0', bioconductor_options), ('scater', '1.4.0', bioconductor_options), ('scran', '1.4.5', bioconductor_options), + ('SC3', '1.4.2', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 920853bd95..1f364643eb 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -550,6 +550,8 @@ exts_list = [ ('vipor', '0.4.5', ext_options), ('ggbeeswarm', '0.6.0', ext_options), ('shinydashboard', '0.6.1', ext_options), + ('rrcov', '1.4-3', ext_options), + ('WriteXLS', '4.0.0', ext_options), ] moduleclass = 'lang' -- GitLab From 17e5f9a308fb6b2031070219eb235e18dec0454c Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Thu, 17 Aug 2017 11:19:50 +0200 Subject: [PATCH 382/845] Addressing review comments: sha256sum, szip in GCCcore --- .../easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb | 2 +- .../easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb | 2 +- .../easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb | 2 +- .../easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb | 2 +- ...y-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb | 2 +- ...y-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb | 2 +- .../h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb | 2 +- .../h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb | 2 +- ...-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb | 2 +- .../h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb | 2 +- .../pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb | 1 + .../pkgconfig-1.2.2-intel-2017a-Python-2.7.13.eb | 1 + .../pkgconfig-1.2.2-intel-2017a-Python-3.6.1.eb | 1 + ...1-foss-2017a.eb => Szip-2.1.1-GCCcore-6.3.0.eb} | 14 +++++++++----- 14 files changed, 22 insertions(+), 15 deletions(-) rename easybuild/easyconfigs/s/Szip/{Szip-2.1.1-foss-2017a.eb => Szip-2.1.1-GCCcore-6.3.0.eb} (62%) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb index 9b47efe44f..3602950bf6 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb @@ -10,7 +10,7 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['43a2f9466702fb1db31df98ae6677f15'] +checksums = ['048a9d149fb99aaa1680a712963f5a78e9c43b588d0e79d55e06760ec377c172'] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb index 711b3163cb..5dce1430bd 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb @@ -10,7 +10,7 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['43a2f9466702fb1db31df98ae6677f15'] +checksums = ['048a9d149fb99aaa1680a712963f5a78e9c43b588d0e79d55e06760ec377c172'] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb index ee3d1c9446..9901d7d4d0 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb @@ -11,7 +11,7 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['7f568e2464d4ab0a74d16b23956d900b'] +checksums = ['a4335849f19fae88c264fd0df046bc321a78c536b2548fc508627a790564dc38'] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb index a3a8e59731..dd4bf512ac 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb @@ -15,7 +15,7 @@ checksums = ['a4335849f19fae88c264fd0df046bc321a78c536b2548fc508627a790564dc38'] dependencies = [ ('zlib', '1.2.11'), - ('Szip', '2.1'), + ('Szip', '2.1.1'), ] moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb index 3af541c153..8c68989177 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.10.1.eb @@ -13,7 +13,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -checksums = ['f62937f40f68d3b128b3941be239dd93'] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] hdf5ver = '1.10.1' versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb index eb3b1702ae..161594e20a 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-2.7.13-HDF5-1.8.19.eb @@ -13,7 +13,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -checksums = ['f62937f40f68d3b128b3941be239dd93'] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] hdf5ver = '1.8.19' versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb index 404bad2e73..804ee87fa7 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2016b-Python-2.7.12.eb @@ -14,7 +14,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -checksums = ['f62937f40f68d3b128b3941be239dd93'] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb index e54f796b4d..d45cef772e 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-2.7.13.eb @@ -14,7 +14,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -checksums = ['f62937f40f68d3b128b3941be239dd93'] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb index 6a8d852d7a..cc8c2a68ed 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb @@ -15,7 +15,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -checksums = ['f62937f40f68d3b128b3941be239dd93'] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb index b93f4ba7bc..f4dfcfc6f1 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1.eb @@ -14,7 +14,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -checksums = ['f62937f40f68d3b128b3941be239dd93'] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] # to really use mpi enabled hdf5 we now seem to need a configure step prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb index da605c6661..e54de3e92a 100644 --- a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-2.7.13.eb @@ -12,6 +12,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['3685ba02a9b72654a764b728b559f327e1dbd7dc6ebc310a1bd429666ee202aa'] dependencies = [ ('Python', '2.7.13'), diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-2.7.13.eb index 0df86ffc84..ff106d3134 100644 --- a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-2.7.13.eb @@ -12,6 +12,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['3685ba02a9b72654a764b728b559f327e1dbd7dc6ebc310a1bd429666ee202aa'] dependencies = [ ('Python', '2.7.13'), diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-3.6.1.eb index 5b31de03c1..a39cb8174c 100644 --- a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017a-Python-3.6.1.eb @@ -12,6 +12,7 @@ toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['3685ba02a9b72654a764b728b559f327e1dbd7dc6ebc310a1bd429666ee202aa'] dependencies = [ ('Python', '3.6.1'), diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.3.0.eb similarity index 62% rename from easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb rename to easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.3.0.eb index 19df3f68d9..16ddff6e90 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-foss-2017a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.3.0.eb @@ -4,17 +4,21 @@ name = 'Szip' version = '2.1.1' homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' -description = "Szip compression software, providing lossless compression of scientific data" -toolchain = {'name': 'foss', 'version': '2017a'} +description = """ + Szip compression software, providing lossless compression of scientific data +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} toolchainopts = {'pic': True} source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['dd579cf0f26d44afd10a0ad7291fc282'] - +checksums = ['897dda94e1d4bf88c91adeaad88c07b468b18eaf2d6125c47acac57e540904a9'] -configopts = "--with-pic" +builddependencies = [ + ('binutils', '2.28'), +] sanity_check_paths = { 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + -- GitLab From 0d0d6d0b469c15c92504ba22fe2faa998da13659 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 17 Aug 2017 13:49:13 +0200 Subject: [PATCH 383/845] add mpath as extension for R 3.4.0 --- easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 1f364643eb..8ec992e75a 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -552,6 +552,7 @@ exts_list = [ ('shinydashboard', '0.6.1', ext_options), ('rrcov', '1.4-3', ext_options), ('WriteXLS', '4.0.0', ext_options), + ('mpath', '0.2-4', ext_options), ] moduleclass = 'lang' -- GitLab From 8849bb384b10a8a0592898404f99cd9f26fba263 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Thu, 17 Aug 2017 15:14:16 +0200 Subject: [PATCH 384/845] Update to sha256 and proper sanity check on shared object --- .../easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb | 2 +- easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb | 2 +- easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb | 2 +- easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016b.eb | 2 +- easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.7.20.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb | 2 ++ .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016b.eb | 2 +- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2017a.eb | 2 +- .../p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-2.7.12-zmq4.eb | 2 +- .../p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-3.5.2-zmq4.eb | 2 +- .../p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb | 2 +- .../p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-2.7.12-zmq4.eb | 2 +- .../p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-3.5.2-zmq4.eb | 2 +- .../p/PyZMQ/PyZMQ-16.0.2-intel-2017a-Python-2.7.13-zmq4.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb | 2 +- easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb | 4 ++-- easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-intel-2017a.eb | 2 +- 23 files changed, 25 insertions(+), 23 deletions(-) diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb index 8853e15fa5..567630149b 100644 --- a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-foss-2017a.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'foss', 'version': '2017a'} source_urls = ['https://download.libsodium.org/libsodium/releases/'] sources = [SOURCE_TAR_GZ] -checksums = ['f38aac160a4bd05f06f743863e54e499'] +checksums = ['9c13accb1a9e59ab3affde0e60ef9a2149ed4d6e8f99c93c7a5b97499ee323fd'] sanity_check_paths = { 'files': ['include/sodium.h', 'lib/libsodium.%s' % SHLIB_EXT, 'lib/libsodium.a'], diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb index 2ae64198e6..8c9749f6d7 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb index a3d2763924..1e572118ec 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016b.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016b.eb index 3584a3c705..a79da5bcde 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016b.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2016b.eb @@ -16,7 +16,7 @@ toolchainopts = {'pic': True} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb index 93a030d6ea..52f0a98f0e 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2017a.eb @@ -16,7 +16,7 @@ toolchainopts = {'pic': True} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb index ba0d346657..c72f7c67ea 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['%s-%s.tar.gz' % ('libpgm', version)] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.7.20.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.7.20.eb index 34fa9dd22f..5e32b43ba4 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.7.20.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'goolf', 'version': '1.7.20'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb index 5c73a02ebe..c1cc929d31 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['%s-%s.tar.gz' % ('libpgm', version)] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb index d10ebd9897..1adecf3498 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['%s-%s.tar.gz' % ('libpgm', version)] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb index b7949218e2..58b6d631b5 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb index abec09000c..07b7e0f6ed 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb @@ -16,7 +16,7 @@ toolchainopts = {'pic': True} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb index 803b19d70e..682da56278 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb @@ -16,6 +16,8 @@ toolchainopts = {'pic': True} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] + configopts = '--with-pic' start_dir = 'pgm' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016b.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016b.eb index f8d13d0834..d3070d3fff 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016b.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2016b.eb @@ -16,7 +16,7 @@ toolchainopts = {'pic': True} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2017a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2017a.eb index d604042523..3a38432402 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2017a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2017a.eb @@ -16,7 +16,7 @@ toolchainopts = {'pic': True} source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] sources = ['libpgm-%(version)s.tar.gz'] -checksums = ['d7673e9ff6cc33cf42fe9fb9a7bfbffa'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-2.7.12-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-2.7.12-zmq4.eb index 2ae02cf975..d3c80e646a 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-2.7.12-zmq4.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-2.7.12-zmq4.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['9a8768b00a566a400d70318f8c359cfe'] +checksums = ['0322543fff5ab6f87d11a8a099c4c07dd8a1719040084b6ce9162bcdf5c45c9d'] dependencies = [ ('Python', '2.7.12'), diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-3.5.2-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-3.5.2-zmq4.eb index a6d0276b23..6cf529a2fe 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-3.5.2-zmq4.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2016b-Python-3.5.2-zmq4.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['9a8768b00a566a400d70318f8c359cfe'] +checksums = ['0322543fff5ab6f87d11a8a099c4c07dd8a1719040084b6ce9162bcdf5c45c9d'] dependencies = [ ('Python', '3.5.2'), diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb index ecb43ca881..02249f164c 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-foss-2017a-Python-2.7.13-zmq4.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'foss', 'version': '2017a'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['9a8768b00a566a400d70318f8c359cfe'] +checksums = ['0322543fff5ab6f87d11a8a099c4c07dd8a1719040084b6ce9162bcdf5c45c9d'] dependencies = [ ('Python', '2.7.13'), diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-2.7.12-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-2.7.12-zmq4.eb index 83db644170..a00c9bd4c1 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-2.7.12-zmq4.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-2.7.12-zmq4.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['9a8768b00a566a400d70318f8c359cfe'] +checksums = ['0322543fff5ab6f87d11a8a099c4c07dd8a1719040084b6ce9162bcdf5c45c9d'] dependencies = [ ('Python', '2.7.12'), diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-3.5.2-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-3.5.2-zmq4.eb index 0d5d945f58..fb1bfb907f 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-3.5.2-zmq4.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2016b-Python-3.5.2-zmq4.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['9a8768b00a566a400d70318f8c359cfe'] +checksums = ['0322543fff5ab6f87d11a8a099c4c07dd8a1719040084b6ce9162bcdf5c45c9d'] dependencies = [ ('Python', '3.5.2'), diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2017a-Python-2.7.13-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2017a-Python-2.7.13-zmq4.eb index 3ee565a8d9..e68bb9c4ba 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2017a-Python-2.7.13-zmq4.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-16.0.2-intel-2017a-Python-2.7.13-zmq4.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['9a8768b00a566a400d70318f8c359cfe'] +checksums = ['0322543fff5ab6f87d11a8a099c4c07dd8a1719040084b6ce9162bcdf5c45c9d'] dependencies = [ ('Python', '2.7.13'), diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb index dabbcbd2d4..2a3a18b7cb 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-foss-2017a.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'foss', 'version': '2017a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -checksums = ['22a860a2d98367e73e414a09dfaf3866'] +checksums = ['88bb1d08f0d67fb1b548c3e2160f7f40fb552cdf6b771a5dd1b94e1e04fc1d9a'] # disable account related utilities (they need OS dependant pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb index d690b704a1..d71e55139a 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-foss-2017a.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'foss', 'version': '2017a'} source_urls = ['https://github.com/zeromq/libzmq/releases/download/v%(version)s/'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['52499909b29604c1e47a86f1cb6a9115'] +checksums = ['5b23f4ca9ef545d5bd3af55d305765e3ee06b986263b31967435d285a3e6df6b'] # --with-pgm will use shipped OpenPGM (in foreign subdir) configopts = '--with-pic --with-system-pgm ' @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-intel-2017a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-intel-2017a.eb index 165ba15944..20cd4f5b63 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-intel-2017a.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.2.2-intel-2017a.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['https://github.com/zeromq/libzmq/releases/download/v%(version)s/'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['52499909b29604c1e47a86f1cb6a9115'] +checksums = ['5b23f4ca9ef545d5bd3af55d305765e3ee06b986263b31967435d285a3e6df6b'] # --with-pgm will use shipped OpenPGM (in foreign subdir) configopts = '--with-pic --with-system-pgm ' -- GitLab From 7bce5dbda57fa1608fefc8065593494bf26f9b10 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 17 Aug 2017 18:02:17 +0200 Subject: [PATCH 385/845] adding easyconfigs: Hadoop-2.6.0-cdh5.12.0-native.eb, snappy-1.1.6.eb --- .../h/Hadoop/Hadoop-2.6.0-cdh5.12.0-native.eb | 31 +++++++++++++++++++ .../easyconfigs/s/snappy/snappy-1.1.6.eb | 24 ++++++++++++++ 2 files changed, 55 insertions(+) create mode 100644 easybuild/easyconfigs/h/Hadoop/Hadoop-2.6.0-cdh5.12.0-native.eb create mode 100644 easybuild/easyconfigs/s/snappy/snappy-1.1.6.eb diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.6.0-cdh5.12.0-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.6.0-cdh5.12.0-native.eb new file mode 100644 index 0000000000..bc2f4774b0 --- /dev/null +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.6.0-cdh5.12.0-native.eb @@ -0,0 +1,31 @@ +name = 'Hadoop' +version = '2.6.0-cdh5.12.0' +versionsuffix = '-native' + +homepage = 'http://archive.cloudera.com/cdh5/cdh/5/' +description = """Hadoop MapReduce by Cloudera""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.cloudera.com/cdh5/cdh/5/'] +checksums = ['6eb2ff649ae1c5d1271732ca766b4e03728190ac4274ab00748ef8c44aa6e8d5'] + +patches = ['Hadoop-TeraSort-on-local-filesystem.patch'] + +builddependencies = [ + ('Maven', '3.5.0'), + ('protobuf', '2.5.0'), # *must* be this version + ('CMake', '3.9.1'), + ('snappy', '1.1.6'), +] + +dependencies = [('Java', '1.7.0_80')] + +build_native_libs = True + +extra_native_libs = [('snappy', 'lib/libsnappy.so*')] + +parallel = 1 + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/snappy/snappy-1.1.6.eb b/easybuild/easyconfigs/s/snappy/snappy-1.1.6.eb new file mode 100644 index 0000000000..7a976b306d --- /dev/null +++ b/easybuild/easyconfigs/s/snappy/snappy-1.1.6.eb @@ -0,0 +1,24 @@ +easyblock = 'CMakeMake' + +name = 'snappy' +version = '1.1.6' + +homepage = 'https://github.com/google/snappy' +description = """Snappy is a compression/decompression library. It does not aim +for maximum compression, or compatibility with any other compression library; +instead, it aims for very high speeds and reasonable compression.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/google/snappy/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['6fa92cde5b2caefd0d9a60336991ba42e5a7ddc3bdc36c5610451373751d0495'] + +builddependencies = [('CMake', '3.9.1')] + +sanity_check_paths = { + 'files': ['lib/libsnappy.%s' % SHLIB_EXT], + 'dirs': ['include'] +} + +moduleclass = 'lib' -- GitLab From 03e0bd232f702b9af03b74695867e0beee07fa31 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 18 Aug 2017 12:30:33 +0200 Subject: [PATCH 386/845] Python 3.6.1 in foss 2016 with matplot lib and h5py bindings Python 3.6.1 in foss 2016 with matplot lib and h5py bindings Also sha256 checksum for Python 3.6.1 in intel 2017a --- ...7.0-foss-2017a-Python-3.6.1-HDF5-1.10.1.eb | 35 +++++ ...7.0-foss-2017a-Python-3.6.1-HDF5-1.8.19.eb | 35 +++++ ...atplotlib-2.0.2-foss-2017a-Python-3.6.1.eb | 48 +++++++ .../p/Python/Python-3.6.1-foss-2017a.eb | 134 ++++++++++++++++++ .../p/Python/Python-3.6.1-intel-2017a.eb | 1 + ...pkgconfig-1.2.2-foss-2017a-Python-3.6.1.eb | 27 ++++ 6 files changed, 280 insertions(+) create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.10.1.eb create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.8.19.eb create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-3.6.1.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-3.6.1-foss-2017a.eb create mode 100644 easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.10.1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.10.1.eb new file mode 100644 index 0000000000..3ed36781b7 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.10.1.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.7.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] + +hdf5ver = '1.10.1' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '3.6.1'), + ('HDF5', hdf5ver), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.8.19.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.8.19.eb new file mode 100644 index 0000000000..458d5d85f9 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-foss-2017a-Python-3.6.1-HDF5-1.8.19.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.7.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['79254312df2e6154c4928f5e3b22f7a2847b6e5ffb05ddc33e37b16e76d36310'] + +hdf5ver = '1.8.19' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '3.6.1'), + ('HDF5', hdf5ver), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..4d2040eef8 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-3.6.1.eb @@ -0,0 +1,48 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +versionsuffix = '-Python-%(pyver)s' + +libpng_ver = '1.6.29' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '3.6.1'), + ('libpng', libpng_ver), + ('freetype', '2.7.1', '-libpng-%s' % libpng_ver), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + 'checksums': ['0ffbc44faa34a8b1704bc108c451ecf87988f900ef7ce757b8e2e84383121ff1'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.1-foss-2017a.eb b/easybuild/easyconfigs/p/Python/Python-3.6.1-foss-2017a.eb new file mode 100644 index 0000000000..6f2470bf49 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.6.1-foss-2017a.eb @@ -0,0 +1,134 @@ +name = 'Python' +version = '3.6.1' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['aa50b0143df7c89ce91be020fe41382613a817354b33acdc6641b44f8ced3828'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.17.0'), + ('GMP', '6.1.2'), + ('XZ', '5.2.3'), + ('libffi', '3.2.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2k'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated May 28th 2015 +exts_list = [ + # note: more recent versions of setuptools (v34.x) can not be installed from source anymore, + # see https://github.com/pypa/setuptools/issues/980 + ('setuptools', '33.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'source_tmpl': '%(name)s-%(version)s.zip', + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', '1.12.1', { + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'patches': ['numpy-1.12.0-mkl.patch'], + }), + ('scipy', '0.19.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'source_tmpl': '%(name)s-%(version)s.zip', + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'patches': [ + 'paycheck-1.0.2_setup-open-README-utf8.patch', + ], + }), + ('pbr', '2.0.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.25.2', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.6.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': [ + 'deap-1.0.2_setup-open-README-utf8.patch', + ], + }), + ('decorator', '4.0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.1.0', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('cryptography', '1.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + }), + ('paramiko', '2.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.5', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('pandas', '0.19.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb b/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb index 9157c902c6..d4d83a1db6 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb @@ -10,6 +10,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] +checksums = ['aa50b0143df7c89ce91be020fe41382613a817354b33acdc6641b44f8ced3828'] # python needs bzip2 to build the bz2 package dependencies = [ diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..c13a3834cc --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-foss-2017a-Python-3.6.1.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.2.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['3685ba02a9b72654a764b728b559f327e1dbd7dc6ebc310a1bd429666ee202aa'] + +dependencies = [ + ('Python', '3.6.1'), + ('pkg-config', '0.29.2'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' -- GitLab From b6884d899b3f8d30be801205d27e6a70080bf4e9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 18 Aug 2017 21:53:54 +0200 Subject: [PATCH 387/845] adding easyconfigs: LLVM-4.0.1-intel-2017a.eb, CMake-3.9.1-GCCcore-6.3.0.eb --- .../c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb | 37 ++++++++++++++++ .../l/LLVM/LLVM-4.0.1-intel-2017a.eb | 43 +++++++++++++++++++ 2 files changed, 80 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/l/LLVM/LLVM-4.0.1-intel-2017a.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..9984bec310 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.27'), +] + + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-4.0.1-intel-2017a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-4.0.1-intel-2017a.eb new file mode 100644 index 0000000000..6b4e290032 --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-4.0.1-intel-2017a.eb @@ -0,0 +1,43 @@ +easyblock = 'CMakeMake' + +name = 'LLVM' +version = '4.0.1' + +homepage = "http://llvm.org/" +description = """The LLVM Core libraries provide a modern source- and target-independent + optimizer, along with code generation support for many popular CPUs + (as well as some less common ones!) These libraries are built around a well + specified code representation known as the LLVM intermediate representation + ("LLVM IR"). The LLVM Core libraries are well documented, and it is + particularly easy to invent your own language (or port an existing compiler) + to use LLVM as an optimizer and code generator.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'cstd': 'gnu++11'} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = ["llvm-%(version)s.src.tar.xz"] +checksums = ['da783db1f82d516791179fe103c71706046561f7972b18f0049242dee6712b51'] + +builddependencies = [ + ('CMake', '3.9.1'), + ('Python', '2.7.13'), +] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +configopts = '-DBUILD_SHARED_LIBS=ON -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -shared-intel" ' +# required to install extra tools in bin/ +configopts += "-DLLVM_INSTALL_UTILS=ON -DLLVM_TARGETS_TO_BUILD=X86 -DLLVM_ENABLE_ZLIB=ON" + +sanity_check_paths = { + 'files': ['bin/llvm-ar', 'bin/FileCheck'], + 'dirs': ['include/llvm', 'include/llvm-c'], +} + +separate_build_dir = True + +moduleclass = 'compiler' -- GitLab From cffa66404ab06849f6819cb2695a2ce5c6076c69 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 18 Aug 2017 22:20:56 +0200 Subject: [PATCH 388/845] fix style issue in CMake easyconfig w.r.t. order of parameters --- easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb index 9984bec310..4b9208d088 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.3.0.eb @@ -13,12 +13,11 @@ source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] -configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' - builddependencies = [ ('binutils', '2.27'), ] +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' dependencies = [ ('ncurses', '6.0'), -- GitLab From 75f2082004bdb82ed55cd2a91c041e2c3b489e19 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 18 Aug 2017 23:42:01 +0200 Subject: [PATCH 389/845] adding easyconfigs: Python-2.7.13-GCCcore-6.3.0-bare.eb --- .../Python-2.7.13-GCCcore-6.3.0-bare.eb | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.3.0-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.3.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.3.0-bare.eb new file mode 100644 index 0000000000..7fc2c97ae9 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.3.0-bare.eb @@ -0,0 +1,39 @@ +name = 'Python' +version = '2.7.13' +versionsuffix = '-bare' + +homepage = 'http://python.org/' + +description = """ + Python is a programming language that lets you work more quickly and + integrate your systems more effectively. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.17.0'), + ('zlib', '1.2.11'), +] + +osdependencies = [ + # rely upon distribution for timely security updates + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +# bare installation: no extensions +exts_list = [] + +moduleclass = 'lang' -- GitLab From a4f03b8db7da6aaa5640f97c11f3a19380754981 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 18 Aug 2017 23:43:55 +0200 Subject: [PATCH 390/845] adding easyconfigs: GLib-2.53.5-GCCcore-6.3.0.eb, PCRE-8.41-GCCcore-6.3.0.eb, util-linux-2.30.1-GCCcore-6.3.0.eb --- .../g/GLib/GLib-2.53.5-GCCcore-6.3.0.eb | 41 ++++++++++++++++++ .../p/PCRE/PCRE-8.41-GCCcore-6.3.0.eb | 42 ++++++++++++++++++ .../util-linux-2.30.1-GCCcore-6.3.0.eb | 43 +++++++++++++++++++ 3 files changed, 126 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..2efa0e3d05 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.3.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.53.5' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['991421f41a4ed4cc1637e5f9db0d03fd236d2cbd19f3c5b097a343bec5126602'] + +builddependencies = [ + ('binutils', '2.27'), + ('Python', '2.7.13', '-bare'), +] +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.8.1'), + ('libxml2', '2.9.4'), + ('PCRE', '8.41'), + ('util-linux', '2.30.1'), +] + +# avoid using hardcoded path to Python binary in build step +preconfigopts = "export PYTHON=python && " + +configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --disable-systemtap " +configopts += "--enable-static --enable-shared" + +postinstallcmds = ["sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] + +sanity_check_paths = { + 'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.3.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..02188b2e07 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.3.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.41' + +homepage = 'http://www.pcre.org/' + +description = """ + The PCRE library is a set of functions that implement regular expression + pattern matching using the same syntax and semantics as Perl 5. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['244838e1f1d14f7e2fa7681b857b3a8566b74215f28133f14a8f5e59241b682c'] + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = """\ + --enable-utf\ + --enable-unicode-properties\ + --enable-pcre16\ + --enable-pcre32\ +""" + +sanity_check_paths = { + 'files': ['bin/pcre-config', 'include/pcre.h', + 'share/man/man3/pcre.3', 'lib/libpcre32.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig', 'share/doc/pcre/html', 'share/man/man1'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..621bc7fecc --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.30.1' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' + +description = "Set of Linux utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['88bb1d08f0d67fb1b548c3e2160f7f40fb552cdf6b771a5dd1b94e1e04fc1d9a'] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From 85174583150c5d86949f767931107815f042d602 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 18 Aug 2017 23:46:54 +0200 Subject: [PATCH 391/845] adding easyconfigs: intltool-0.51.0-intel-2017a-Perl-5.24.1.eb, XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb --- ...intltool-0.51.0-intel-2017a-Perl-5.24.1.eb | 25 +++++++++++++++++ ...-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb | 27 +++++++++++++++++++ 2 files changed, 52 insertions(+) create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000..ba032a7422 --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.24.1' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000..dcabb7a391 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Perl', '5.24.1'), + ('expat', '2.2.0') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' -- GitLab From 2f1d84ea6cc11b024b8898ebbe5b94ce2649faf6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 18 Aug 2017 23:53:08 +0200 Subject: [PATCH 392/845] adding easyconfigs: cairo-1.14.10-GCCcore-6.3.0.eb --- .../c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb | 43 +++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..db1409df81 --- /dev/null +++ b/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'cairo' +version = '1.14.10' + +homepage = 'http://cairographics.org' +description = """Cairo is a 2D graphics library with support for multiple output devices. + Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, + PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_XZ] +checksums = ['7e87878658f2c9951a14fc64114d4958c0e65ac47530b8ac3078b2ce41b66a09'] + +builddependencies = [ + ('binutils', '2.27'), +] +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('freetype', '2.7.1', '-libpng-1.6.29'), + ('pixman', '0.34.0'), + ('expat', '2.2.0'), + ('GLib', '2.53.5'), + ('X11', '20170314'), +] + +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no --enable-gobject=yes --enable-svg=yes --enable-tee=yes --enable-xlib-xcb " + +sanity_check_paths = { + 'files': ['bin/cairo-trace', 'lib/cairo/libcairo-trace.so', 'lib/cairo/libcairo-trace.a', + 'lib/libcairo.a', 'lib/libcairo-gobject.a', 'lib/libcairo-script-interpreter.a', + 'lib/libcairo-gobject.so', 'lib/libcairo-script-interpreter.so', 'lib/libcairo.so'] + + ['include/cairo/cairo%s.h' % x for x in ['', '-deprecated', '-features', '-ft', '-gobject', '-pdf', '-ps', + '-script', '-script-interpreter', '-svg', '-version', '-xcb', + '-xlib', '-xlib-xrender']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'vis' -- GitLab From 583177017704639c3c5808dbb9362d37fb763fea Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 19 Aug 2017 00:00:14 +0200 Subject: [PATCH 393/845] adding easyconfigs: GObject-Introspection-1.53.5-intel-2017a.eb, GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb --- ...pection-1.53.5-intel-2017a-Python-3.6.1.eb | 49 +++++++++++++++++++ ...Object-Introspection-1.53.5-intel-2017a.eb | 48 ++++++++++++++++++ 2 files changed, 97 insertions(+) create mode 100644 easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb create mode 100644 easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..38b0f0bd4c --- /dev/null +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,49 @@ +easyblock = 'ConfigureMake' + +name = 'GObject-Introspection' +version = '1.53.5' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://wiki.gnome.org/GObjectIntrospection/' +description = """GObject introspection is a middleware layer between C libraries + (using GObject) and language bindings. The C library can be scanned at + compile time and generate a metadata file, in addition to the actual + native C library. Then at runtime, language bindings can read this + metadata and automatically provide bindings to call into the C library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['b8271d3e3e3044289d06e824605a53b2518593bc2b071db6c90485c837ff437d'] + +dependencies = [ + ('GLib', '2.53.5'), + ('libffi', '3.2.1'), + ('Python', '3.6.1'), +] + +builddependencies = [ + ('Autotools', '20150215'), + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + ('cairo', '1.14.10'), +] + +preconfigopts = "env GI_SCANNER_DISABLE_CACHE=true PYTHON=python3" + +# avoid using hard-coded path to 'python' in shebang of scripts +buildopts = "PYTHON=python3" + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + + ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + 'dirs': ['include', 'share'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb new file mode 100644 index 0000000000..aece01777b --- /dev/null +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'GObject-Introspection' +version = '1.53.5' + +homepage = 'https://wiki.gnome.org/GObjectIntrospection/' +description = """GObject introspection is a middleware layer between C libraries + (using GObject) and language bindings. The C library can be scanned at + compile time and generate a metadata file, in addition to the actual + native C library. Then at runtime, language bindings can read this + metadata and automatically provide bindings to call into the C library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['b8271d3e3e3044289d06e824605a53b2518593bc2b071db6c90485c837ff437d'] + +dependencies = [ + ('GLib', '2.53.5'), + ('libffi', '3.2.1'), + ('Python', '2.7.13'), +] + +builddependencies = [ + ('Autotools', '20150215'), + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + ('cairo', '1.14.10'), +] + +preconfigopts = "env GI_SCANNER_DISABLE_CACHE=true " + +# avoid using hard-coded path to 'python' in shebang of scripts +buildopts = "PYTHON=python" + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + + ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + 'dirs': ['include', 'share'] +} + +moduleclass = 'devel' -- GitLab From 4cf506acec70925666a248daa8a15097907b7ae4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 19 Aug 2017 00:03:18 +0200 Subject: [PATCH 394/845] add SHA256 checksums in intltool and XML-Parser easyconfigs using intel/2017a --- .../i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb | 1 + .../x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb | 1 + 2 files changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb index ba032a7422..5d8bd01add 100644 --- a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] sources = [SOURCE_TAR_GZ] +checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] dependencies = [ ('XML-Parser', '2.44_01', versionsuffix), diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb index dcabb7a391..d2ee8216b0 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] dependencies = [ ('Perl', '5.24.1'), -- GitLab From 7c5faa79b9008b00594982c1a5d42eeb88e2a768 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 19 Aug 2017 00:06:10 +0200 Subject: [PATCH 395/845] adding easyconfigs: Gdk-Pixbuf-2.36.8-intel-2017a.eb, libjpeg-turbo-1.5.2-GCCcore-6.3.0.eb, NASM-2.13.01-GCCcore-6.3.0.eb --- .../Gdk-Pixbuf-2.36.8-intel-2017a.eb | 37 +++++++++++++++++ .../libjpeg-turbo-1.5.2-GCCcore-6.3.0.eb | 41 +++++++++++++++++++ .../n/NASM/NASM-2.13.01-GCCcore-6.3.0.eb | 37 +++++++++++++++++ 3 files changed, 115 insertions(+) create mode 100644 easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.3.0.eb diff --git a/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb new file mode 100644 index 0000000000..ab5bc95377 --- /dev/null +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'Gdk-Pixbuf' +version = '2.36.8' + +homepage = 'https://developer.gnome.org/gdk-pixbuf/stable/' +description = """ + The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. + It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it + was distributed as part of GTK+ 2 but it was split off into a separate package + in preparation for the change to GTK+ 3. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['5d68e5283cdc0bf9bda99c3e6a1d52ad07a03364fa186b6c26cfc86fcd396a19'] + +builddependencies = [ + ('GObject-Introspection', '1.53.5', '-Python-2.7.13') +] +dependencies = [ + ('GLib', '2.53.5'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.29'), + ('LibTIFF', '4.0.8'), +] + +configopts = "--disable-maintainer-mode --enable-debug=no --enable-introspection=yes " +configopts += "--disable-Bsymbolic --without-gdiplus --enable-shared --enable-static" + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..95e20db02a --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.3.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.2' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' + +description = """ + libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to + accelerate baseline JPEG compression and decompression. libjpeg is a library + that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['9098943b270388727ae61de82adec73cf9f0dbb240b3bc8b172595ebf405b528'] + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('NASM', '2.13.01'), +] + +configopts = "--with-jpeg8" + +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', + 'bin/tjbench', 'bin/wrjpgcom', 'lib/libjpeg.a', + 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', + 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..a720e4ab7d --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.3.0.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.13.01' + +homepage = 'http://www.nasm.us/' + +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['08f97baf0a7f892128c6413cfa93b69dc5825fbbd06c70928aea028835d198fa'] + +builddependencies = [ + ('binutils', '2.27'), +] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 609d68f0d568834a5deabe24fc7e00dc75e2c088 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 19 Aug 2017 00:23:13 +0200 Subject: [PATCH 396/845] add missing versionsuffix in GObject-Introspection 1.53.5 easyconfig --- ...=> GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb} | 1 + 1 file changed, 1 insertion(+) rename easybuild/easyconfigs/g/GObject-Introspection/{GObject-Introspection-1.53.5-intel-2017a.eb => GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb} (97%) diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb similarity index 97% rename from easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb rename to easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb index aece01777b..f1ccf8567b 100644 --- a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb @@ -2,6 +2,7 @@ easyblock = 'ConfigureMake' name = 'GObject-Introspection' version = '1.53.5' +versionsuffix = '-Python-%(pyver)s' homepage = 'https://wiki.gnome.org/GObjectIntrospection/' description = """GObject introspection is a middleware layer between C libraries -- GitLab From a218966c483974a203b30fd23c7326e726a2c1d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 21 Aug 2017 11:00:32 +0200 Subject: [PATCH 397/845] fix typo in comment in util-linux easyconfig --- .../easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb index 621bc7fecc..b471d8db48 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30.1-GCCcore-6.3.0.eb @@ -14,7 +14,7 @@ source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] checksums = ['88bb1d08f0d67fb1b548c3e2160f7f40fb552cdf6b771a5dd1b94e1e04fc1d9a'] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir -- GitLab From 31e9d567f6ccb26a9c3b409be527fefb8b3ba48c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 21 Aug 2017 11:01:31 +0200 Subject: [PATCH 398/845] fix typo in comment in util-linux easyconfigs: dependant -> dependent --- .../easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb | 2 +- .../easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb | 2 +- 23 files changed, 23 insertions(+), 23 deletions(-) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb index 75238f2124..81903c5057 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir configopts = '--disable-chfn-chsh --disable-login --disable-su ' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb index ed49a78c1e..bd42d229bf 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir configopts = '--disable-chfn-chsh --disable-login --disable-su ' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb index 43d67f412c..422eb3286d 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir configopts = '--disable-chfn-chsh --disable-login --disable-su ' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb index df0a957cf2..ca73870581 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['%s/v%s' % (homepage, '.'.join(version.split('.')[0:2]))] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir configopts = '--disable-chfn-chsh --disable-login --disable-su ' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb index be21e2d15b..6191146acc 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir configopts = '--disable-chfn-chsh --disable-login --disable-su ' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb index f71360b39b..1e0d6678bb 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb index 61d17ba4f2..14dd7f74c2 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb index 395c68df0e..e65c62be4d 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb index c339492021..780e638954 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb index dae5a4f297..49b97f0469 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb index 50b1fff058..308354e936 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb index 6e398ddd1e..d83f975613 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb index 1e98256d45..39cfa2cf22 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'goolf', 'version': '1.7.20'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb index 98645a6d82..3e60a2861b 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2015b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb index fa18d8bb1d..15641da974 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb index 8c21c443e7..abee4fd267 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb index d86cc6a029..eabf986da0 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb index d02d397e23..fc43956ffe 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb index 246ed0de3f..0cc9df6b12 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb index c4419d6080..d57a1808da 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb index 5bf5c2a724..3820461aa7 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb @@ -23,7 +23,7 @@ dependencies = [ ('zlib', '1.2.11'), ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb index b794436556..5307a135b9 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb index 64826e9aa5..6d30be4b89 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb @@ -14,7 +14,7 @@ source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] checksums = ['e84cc32566abf28b84efb5ee326e1f3597c3d19b9916740f50c75bd57e498ce0'] -# disable account related utilities (they need OS dependant pam-devel files) +# disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) # install systemd service files in install dir # install bash completion files in install dir -- GitLab From 849f45794f799c94a4dbae33c0825c32bfcac6e0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 21 Aug 2017 11:57:23 +0200 Subject: [PATCH 399/845] add SHA256 checksums in util-linux easyconfigs --- .../u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb | 1 + .../u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb | 1 + .../u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb | 1 + .../easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb | 1 + .../u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb | 4 +--- .../easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb | 1 + 22 files changed, 22 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb index 81903c5057..ba27f710e3 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['79d5a1ac095b1a4cc1bd13e43f8f65bfaa5b9793c61a559b5de137ce316170bd'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb index bd42d229bf..27588804c6 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['79d5a1ac095b1a4cc1bd13e43f8f65bfaa5b9793c61a559b5de137ce316170bd'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb index 422eb3286d..807046abfc 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['79d5a1ac095b1a4cc1bd13e43f8f65bfaa5b9793c61a559b5de137ce316170bd'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb index ca73870581..ead6224d8a 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['%s/v%s' % (homepage, '.'.join(version.split('.')[0:2]))] sources = [SOURCELOWER_TAR_GZ] +checksums = ['79d5a1ac095b1a4cc1bd13e43f8f65bfaa5b9793c61a559b5de137ce316170bd'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb index 6191146acc..c3b23acffb 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['b9b51673b21b99e296b9c1de31d81a1f0cd36b28afec5c6b1b3f273319c2f3b7'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb index 1e0d6678bb..f4f54bd198 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d50003cba43a910475b25456057e715f63c69cf5d26d7d1e085bf678ebe6ac0e'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb index 14dd7f74c2..abb4bbb8f0 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['cf80b7e3d9011600d888cf19cfc0d124960e490ba87faa62705e62acbaac0b8c'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb index e65c62be4d..b39cc377a2 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['cf80b7e3d9011600d888cf19cfc0d124960e490ba87faa62705e62acbaac0b8c'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb index 780e638954..406aa59e1e 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['cf80b7e3d9011600d888cf19cfc0d124960e490ba87faa62705e62acbaac0b8c'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb index 49b97f0469..1c833e1478 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['f38979533ce43905a111580d17b1cf57169e5e04a54b5d00f18069b2271967ca'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb index 308354e936..0277934af6 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['133c14f625d40e90e73e9d200faf3f2ce87937b99f923c84e5504ac0badc71d6'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb index d83f975613..52f6553426 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2016a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['133c14f625d40e90e73e9d200faf3f2ce87937b99f923c84e5504ac0badc71d6'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb index 39cfa2cf22..7457b234c7 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-goolf-1.7.20.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.7.20'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['133c14f625d40e90e73e9d200faf3f2ce87937b99f923c84e5504ac0badc71d6'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb index 3e60a2861b..f7a17a0f74 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2015b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['133c14f625d40e90e73e9d200faf3f2ce87937b99f923c84e5504ac0badc71d6'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb index 15641da974..6b117e4b69 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2016a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['133c14f625d40e90e73e9d200faf3f2ce87937b99f923c84e5504ac0badc71d6'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb index abee4fd267..4c43415043 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-foss-2016a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['b79901455901d0e8cd5aa58671dcc9118fa333cce805a26904155e80a621f595'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb index eabf986da0..b1143ef21e 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.28-intel-2016a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['b79901455901d0e8cd5aa58671dcc9118fa333cce805a26904155e80a621f595'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb index fc43956ffe..042a50a556 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.28.1-intel-2016b.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['2e16882f018161dc55f36435f09dc29c15072c86630226a7552aeb43789e1644'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb index 0cc9df6b12..0f580869d3 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['36d2fe6fcc962b6b4354ecd427ad766bc4ad29581f83afe67c3eadbdc5245a1f'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb index d57a1808da..b575865c16 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['36d2fe6fcc962b6b4354ecd427ad766bc4ad29581f83afe67c3eadbdc5245a1f'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb index 3820461aa7..f0e822bdd1 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb @@ -10,9 +10,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] -checksums = [ - '29ccdf91d2c3245dc705f0ad3bf729ac41d8adcdbeff914e797c552ecb04a4c7', # util-linux-2.29.2.tar.gz -] +checksums = ['29ccdf91d2c3245dc705f0ad3bf729ac41d8adcdbeff914e797c552ecb04a4c7'] builddependencies = [ ('binutils', '2.27'), diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb index 5307a135b9..2a57603e7b 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['%s/v%%(version_major_minor)s' % homepage] sources = [SOURCELOWER_TAR_GZ] +checksums = ['29ccdf91d2c3245dc705f0ad3bf729ac41d8adcdbeff914e797c552ecb04a4c7'] # disable account related utilities (they need OS dependent pam-devel files) # disable wall and friends (requires group changing permissions for install user) -- GitLab From 9fb094133d0925fbf9787a25a111a052ab6b4975 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 21 Aug 2017 12:24:18 +0200 Subject: [PATCH 400/845] remove superfluous $CPATH update in GLib 2.44.0 easyconfig --- easybuild/easyconfigs/g/GLib/GLib-2.44.0-GCC-4.9.2.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.44.0-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GLib/GLib-2.44.0-GCC-4.9.2.eb index 94d03a2c3d..1129e629db 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.44.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.44.0-GCC-4.9.2.eb @@ -19,6 +19,4 @@ dependencies = [ ] builddependencies = [('Python', '2.7.9', '-bare')] -modextrapaths = {'CPATH': ['include/glib-2.0', 'lib/glib-2.0/include']} - moduleclass = 'vis' -- GitLab From 4cc0417c184912b1831340c640f0d09b2404e390 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 21 Aug 2017 23:18:50 +0200 Subject: [PATCH 401/845] use SHLIB_EXT in cairo easyconfig rather than hardcoding .so --- easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb index db1409df81..0decbb331e 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.14.10-GCCcore-6.3.0.eb @@ -31,9 +31,10 @@ dependencies = [ configopts = "--enable-symbol-lookup=no --enable-gobject=yes --enable-svg=yes --enable-tee=yes --enable-xlib-xcb " sanity_check_paths = { - 'files': ['bin/cairo-trace', 'lib/cairo/libcairo-trace.so', 'lib/cairo/libcairo-trace.a', + 'files': ['bin/cairo-trace', 'lib/cairo/libcairo-trace.%s' % SHLIB_EXT, 'lib/cairo/libcairo-trace.a', 'lib/libcairo.a', 'lib/libcairo-gobject.a', 'lib/libcairo-script-interpreter.a', - 'lib/libcairo-gobject.so', 'lib/libcairo-script-interpreter.so', 'lib/libcairo.so'] + + 'lib/libcairo-gobject.%s' % SHLIB_EXT, 'lib/libcairo-script-interpreter.%s' % SHLIB_EXT, + 'lib/libcairo.%s' % SHLIB_EXT] + ['include/cairo/cairo%s.h' % x for x in ['', '-deprecated', '-features', '-ft', '-gobject', '-pdf', '-ps', '-script', '-script-interpreter', '-svg', '-version', '-xcb', '-xlib', '-xlib-xrender']], -- GitLab From 105827f6a3b9104064f58c268bb1d4beb50f3dcf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 22 Aug 2017 08:16:20 +0200 Subject: [PATCH 402/845] .so -> SHLIB_EXT in GObject-Introspection 1.53.5 easyconfigs --- .../GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb | 2 +- .../GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb index f1ccf8567b..85392bca63 100644 --- a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-2.7.13.eb @@ -42,7 +42,7 @@ modextrapaths = { sanity_check_paths = { 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + - ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + ['lib/libgirepository-1.0.%s' % x for x in [SHLIB_EXT, 'a']], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb index 38b0f0bd4c..82eb56eec7 100644 --- a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.53.5-intel-2017a-Python-3.6.1.eb @@ -42,7 +42,7 @@ modextrapaths = { sanity_check_paths = { 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + - ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + ['lib/libgirepository-1.0.%s' % x for x in [SHLIB_EXT, 'a']], 'dirs': ['include', 'share'] } -- GitLab From 8cad7d4f825a22c85bd9dcc9854fe282ecff1787 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 23 Aug 2017 13:30:21 +0200 Subject: [PATCH 403/845] adding easyconfigs: mdtest-1.9.3-intel-2017a.eb --- .../m/mdtest/mdtest-1.9.3-intel-2017a.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-intel-2017a.eb diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-intel-2017a.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-intel-2017a.eb new file mode 100644 index 0000000000..f78dcbfde9 --- /dev/null +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-intel-2017a.eb @@ -0,0 +1,41 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'mdtest' +version = '1.9.3' + +homepage = 'http://sourceforge.net/projects/mdtest/' +description = """ mdtest is an MPI-coordinated metadata benchmark test that performs + open/stat/close operations on files and directories and then reports the performance.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TGZ] +checksums = ['b7e76252031232cf0bba91475f48d0c77dd2e0a56a2e871f1d48e6f247109d8a'] + +dependencies = [('zlib', '1.2.11')] + +parallel = 1 + +buildopts = ' CC="$CC"' + +files_to_copy = [ + (['mdtest'], 'bin'), + (['mdtest.1'], 'man/man1'), + "README", + "RELEASE_LOG", + "scripts" +] + +sanity_check_paths = { + 'files': ['bin/mdtest'], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 0ba16d9c403e61de257ef8ae39d1c20fdd97320f Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 23 Aug 2017 14:45:02 +0200 Subject: [PATCH 404/845] Add SOAPdenovo-Trans/1.04 for intel/2017a --- .../SOAPdenovo-Trans-1.04-intel-2017a.eb | 32 +++++++++++++++++++ .../SOAPdenovo-Trans/fix-makefiles-1.04.patch | 30 +++++++++++++++++ 2 files changed, 62 insertions(+) create mode 100644 easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb create mode 100644 easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.04.patch diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb new file mode 100644 index 0000000000..339fff4b72 --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'MakeCp' + +name = 'SOAPdenovo-Trans' +version = '1.04' + +homepage = 'http://soap.genomics.org.cn/SOAPdenovo-Trans.html' +description = """SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, +adapt to alternative splicing and different expression level among transcripts. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['4e25da665b38172.tar.gz'] # no releases tagged on github +source_urls = ['https://github.com/aquaskyline/SOAPdenovo-Trans/archive/'] + +patches = ['fix-makefiles-%(version)s.patch'] + +dependencies = [('zlib', '1.2.11')] + +start_dir = 'src' + +buildopts = ' && make 127mer=1' + +files_to_copy = [(['../SOAPdenovo-Trans-127mer', '../SOAPdenovo-Trans-31mer'], 'bin'), '../LICENSE', + '../README.md', '../VERSION'] + +sanity_check_paths = { + 'files': ['bin/SOAPdenovo-Trans-127mer', 'bin/SOAPdenovo-Trans-31mer'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.04.patch b/easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.04.patch new file mode 100644 index 0000000000..edb305d008 --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.04.patch @@ -0,0 +1,30 @@ +# Fix makefile to use EB values +# Ward Poelmans +--- SOAPdenovo-Trans-src-v1.04.orig/src/Makefile 2014-04-15 04:37:16.000000000 +0200 ++++ SOAPdenovo-Trans-src-v1.04/src/Makefile 2017-08-23 07:54:58.108664416 +0200 +@@ -1,5 +1,5 @@ +-CC= gcc +-CFLAGS= -O3 -fomit-frame-pointer -static ++CC := $(CC) ++CFLAGS := -fomit-frame-pointer $(CFLAGS) + #CFLAGS= -O3 -g -D_DEBUG + DFLAGS= + +@@ -32,7 +32,7 @@ + INCLUDES= -Iinc + SUBDIRS= . + LIBPATH= +-LIBS= -pthread -lm -lrt -lbam -lz -L./inc ++LIBS := $(LIBS) -lrt -lbam -lz -L./inc + EXTRA_FLAGS= + + BIT_ERR = 0 +@@ -73,7 +73,7 @@ + @test $(BIT_ERR) != 1 || sh -c 'echo "Fatal: 64bit CPU and Operating System required!";false;' + + SOAPdenovo: envTest $(OBJS) +- @$(CC) $(CFLAGS) -o $(PROG) $(OBJS) $(LIBPATH) $(LIBS) $(ENTRAFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $(PROG) $(OBJS) $(LIBPATH) $(LIBS) $(ENTRAFLAGS) + @printf "Linking...\r" + @printf "$(PROG) compilation done.\n"; + -- GitLab From a94900d75d6e1c3c05299927f67a920f66381c1f Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 23 Aug 2017 14:45:39 +0200 Subject: [PATCH 405/845] Add SPAdes/3.10.1 for foss/2017a --- .../s/SPAdes/SPAdes-3.10.1-foss-2017a.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb new file mode 100644 index 0000000000..7c013e44e4 --- /dev/null +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb @@ -0,0 +1,45 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 3.9.0: +# Modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = "CMakeMake" + +name = 'SPAdes' +version = '3.10.1' + +homepage = 'http://cab.spbu.ru/software/spades/' +description = """Genome assembler for single-cell and isolates data sets""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['http://cab.spbu.ru/files/release%(version)s'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('CMake', '3.8.2')] + +dependencies = [ + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), +] + +start_dir = 'src' + +separate_build_dir = True + +configopts = ' -DBoost_NO_BOOST_CMAKE=ON' + +sanity_check_commands = [('spades.py', '--test')] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bwa-spades', 'dipspades', 'dipspades.py', + 'hammer', 'ionhammer', 'spades', 'spades.py']], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From a10eead80ac4f54bf38cfa9a7ebd54217eb9d3ee Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 23 Aug 2017 16:08:46 +0200 Subject: [PATCH 406/845] bump OpenBLAS to 0.2.20 in foss/2017b, with inclusion of two important patches --- easybuild/easyconfigs/f/foss/foss-2017b.eb | 7 +- ...BLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb | 56 ------ .../OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch | 35 ---- .../OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb | 50 +++++ ...20_fix-Intel-L1-cache-size-detection.patch | 188 ++++++++++++++++++ .../OpenBLAS-0.2.20_revert-honor-cpuset.patch | 135 +++++++++++++ ...PACK-2.0.2-gompi-2017b-OpenBLAS-0.2.20.eb} | 7 +- 7 files changed, 379 insertions(+), 99 deletions(-) delete mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb delete mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_revert-honor-cpuset.patch rename easybuild/easyconfigs/s/ScaLAPACK/{ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.19-LAPACK-3.7.0.eb => ScaLAPACK-2.0.2-gompi-2017b-OpenBLAS-0.2.20.eb} (76%) diff --git a/easybuild/easyconfigs/f/foss/foss-2017b.eb b/easybuild/easyconfigs/f/foss/foss-2017b.eb index a0cf18555c..d217118e86 100644 --- a/easybuild/easyconfigs/f/foss/foss-2017b.eb +++ b/easybuild/easyconfigs/f/foss/foss-2017b.eb @@ -12,9 +12,8 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} gccver = '6.4.0-2.28' blaslib = 'OpenBLAS' -blasver = '0.2.19' +blasver = '0.2.20' blas = '%s-%s' % (blaslib, blasver) -blassuff = '-LAPACK-3.7.0' # toolchain used to build foss dependencies comp_mpi_tc_name = 'gompi' @@ -26,9 +25,9 @@ comp_mpi_tc = (comp_mpi_tc_name, version) dependencies = [ ('GCC', gccver), ('OpenMPI', '2.1.1', '', ('GCC', gccver)), - (blaslib, blasver, blassuff, ('GCC', gccver)), + (blaslib, blasver, '', ('GCC', gccver)), ('FFTW', '3.3.6', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s' % blas, comp_mpi_tc), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb deleted file mode 100644 index 21faaaf7ab..0000000000 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.4.0-2.28-LAPACK-3.7.0.eb +++ /dev/null @@ -1,56 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenBLAS' -version = '0.2.19' - -lapackver = '3.7.0' -versionsuffix = '-LAPACK-%s' % lapackver - -homepage = 'http://xianyi.github.com/OpenBLAS/' -description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" - -toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} - -lapack_src = 'lapack-%s.tgz' % lapackver -large_src = 'large.tgz' -timing_src = 'timing.tgz' - -lapack_unpack_cmd = 'cd %(name)s-%(version)s; rm -rf lapack-netlib;' -lapack_unpack_cmd += 'mkdir lapack-netlib;' -lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' - -sources = [ - 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), - large_src, - timing_src, -] -source_urls = [ - # order matters, trying to download the LAPACK tarball from GitHub causes trouble - "http://www.netlib.org/lapack/", - "http://www.netlib.org/lapack/timing/", - "https://github.com/xianyi/OpenBLAS/archive/", -] - -patches = [ - (large_src, '.'), - (timing_src, '.'), - 'OpenBLAS-%(version)s_LAPACK-3.7.0-fixes.patch', -] - -skipsteps = ['configure'] - -buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' -installopts = "USE_THREAD=1 PREFIX=%(installdir)s" - -# extensive testing can be enabled by uncommenting the line below -# runtest = 'PATH=.:$PATH lapack-timing' - -sanity_check_paths = { - 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', - 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch deleted file mode 100644 index 54c1b5525d..0000000000 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch +++ /dev/null @@ -1,35 +0,0 @@ -fixes to combine OpenBLAS 0.2.19 with LAPACK 3.7.0 -* upstream bugfix in Makefile for LAPACK 3.7.0, cfr. https://github.com/Reference-LAPACK/lapack/commit/c5788233f95fed2c7f008ea079e8257a85348287 -* fix copying of lapacke_mangling.h, since it was renamed in LAPACK 3.7.0 -author: Kenneth Hoste (HPC-UGent) ---- OpenBLAS-0.2.19/Makefile.install.orig 2017-01-04 15:51:12.483541471 +0100 -+++ OpenBLAS-0.2.19/Makefile.install 2017-01-04 15:51:27.583647000 +0100 -@@ -50,7 +50,7 @@ - @echo Copying LAPACKE header files to $(DESTDIR)$(OPENBLAS_INCLUDE_DIR) - @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke.h" - @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_config.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_config.h" -- @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_mangling_with_flags.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_mangling.h" -+ @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_mangling.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_mangling.h" - @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_utils.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_utils.h" - endif - ---- OpenBLAS-0.2.19/lapack-netlib/SRC/CMakeLists.txt.orig -+++ OpenBLAS-0.2.19/lapack-netlib/SRC/CMakeLists.txt -@@ -454,7 +454,6 @@ set(ZLASRC - zgelqt.f zgelqt3.f zgemlqt.f - zgetsls.f zgeqr.f zlatsqr.f zlamtsqr.f zgemqr.f - zgelq.f zlaswlq.f zlamswlq.f zgemlq.f -- ztplqt.f ztplqt2.f ztpmlqt.f - zhetrd_2stage.f zhetrd_he2hb.f zhetrd_hb2st.F zhb2st_kernels.f - zheevd_2stage.f zheev_2stage.f zheevx_2stage.f zheevr_2stage.f - zhbev_2stage.f zhbevx_2stage.f zhbevd_2stage.f zhegv_2stage.f) ---- OpenBLAS-0.2.19/lapack-netlib/SRC/Makefile.orig -+++ OpenBLAS-0.2.19/lapack-netlib/SRC/Makefile -@@ -464,7 +464,6 @@ ZLASRC = \ - zgelqt.o zgelqt3.o zgemlqt.o \ - zgetsls.o zgeqr.o zlatsqr.o zlamtsqr.o zgemqr.o \ - zgelq.o zlaswlq.o zlamswlq.o zgemlq.o \ -- ztplqt.o ztplqt2.o ztpmlqt.o \ - zhetrd_2stage.o zhetrd_he2hb.o zhetrd_hb2st.o zhb2st_kernels.o \ - zheevd_2stage.o zheev_2stage.o zheevx_2stage.o zheevr_2stage.o \ - zhbev_2stage.o zhbevx_2stage.o zhbevd_2stage.o zhegv_2stage.o diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..1b9ef9d2f9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb @@ -0,0 +1,50 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.20' + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = "OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version." + +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} + +large_src = 'large.tgz' +timing_src = 'timing.tgz' + +source_urls = [ + # order matters, trying to download the large.tgz/timing.tgz LAPACK tarballs from GitHub causes trouble + 'http://www.netlib.org/lapack/timing/', + 'https://github.com/xianyi/OpenBLAS/archive/', +] +sources = ['v%(version)s.tar.gz'] +checksums = [ + '5ef38b15d9c652985774869efd548b8e3e972e1e99475c673b25537ed7bcf394', # v0.2.20.tar.gz (OpenBLAS) + 'f328d88b7fa97722f271d7d0cfea1c220e0f8e5ed5ff01d8ef1eb51d6f4243a1', # large.tgz + '999c65f8ea8bd4eac7f1c7f3463d4946917afd20a997807300fe35d70122f3af', # timing.tgz + '1d043e4838ec1f90b2b49318b780e3ab13b46133cb72a8d83eb0e3b1b056c4d6', # OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch + '1e6a046ab658c6e0b351de901d2812db28c2042f9f141416144c2faaf71fbb37', # OpenBLAS-0.2.20_revert-honor-cpuset.patch +] + +patches = [ + (large_src, '.'), + (timing_src, '.'), + 'OpenBLAS-%(version)s_fix-Intel-L1-cache-size-detection.patch', + 'OpenBLAS-%(version)s_revert-honor-cpuset.patch', +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +# runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch new file mode 100644 index 0000000000..f974460dc6 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch @@ -0,0 +1,188 @@ +fixes detection of L1 cache size on Intel processors, incl. Intel Haswell) +see https://github.com/xianyi/OpenBLAS/pull/1236 && https://github.com/xianyi/OpenBLAS/issues/1232 +--- a/cpuid_x86.c ++++ b/cpuid_x86.c +@@ -71,12 +71,23 @@ void cpuid(int op, int *eax, int *ebx, int *ecx, int *edx) + *edx = cpuInfo[3]; + } + ++void cpuid_count(int op, int count, int *eax, int *ebx, int *ecx, int *edx) ++{ ++ int cpuInfo[4] = {-1}; ++ __cpuidex(cpuInfo, op, count); ++ *eax = cpuInfo[0]; ++ *ebx = cpuInfo[1]; ++ *ecx = cpuInfo[2]; ++ *edx = cpuInfo[3]; ++} ++ + #else + + #ifndef CPUIDEMU + + #if defined(__APPLE__) && defined(__i386__) + void cpuid(int op, int *eax, int *ebx, int *ecx, int *edx); ++void cpuid_count(int op, int count, int *eax, int *ebx, int *ecx, int *edx); + #else + static C_INLINE void cpuid(int op, int *eax, int *ebx, int *ecx, int *edx){ + #if defined(__i386__) && defined(__PIC__) +@@ -90,6 +101,19 @@ static C_INLINE void cpuid(int op, int *eax, int *ebx, int *ecx, int *edx){ + ("cpuid": "=a" (*eax), "=b" (*ebx), "=c" (*ecx), "=d" (*edx) : "a" (op) : "cc"); + #endif + } ++ ++static C_INLINE void cpuid_count(int op, int count ,int *eax, int *ebx, int *ecx, int *edx){ ++#if defined(__i386__) && defined(__PIC__) ++ __asm__ __volatile__ ++ ("mov %%ebx, %%edi;" ++ "cpuid;" ++ "xchgl %%ebx, %%edi;" ++ : "=a" (*eax), "=D" (*ebx), "=c" (*ecx), "=d" (*edx) : "0" (op), "2" (count) : "cc"); ++#else ++ __asm__ __volatile__ ++ ("cpuid": "=a" (*eax), "=b" (*ebx), "=c" (*ecx), "=d" (*edx) : "0" (op), "2" (count) : "cc"); ++#endif ++} + #endif + + #else +@@ -157,6 +157,10 @@ void cpuid(unsigned int op, unsigned int *eax, unsigned int *ebx, unsigned int * + *edx = idlist[current].d; + } + ++void cpuid_count (unsigned int op, unsigned int count, unsigned int *eax, unsigned int *ebx, unsigned int *ecx, unsigned int *edx) { ++ return cpuid (op, eax, ebx, ecx, edx); ++} ++ + #endif + + #endif // _MSC_VER +@@ -312,9 +336,9 @@ int get_cacheinfo(int type, cache_info_t *cacheinfo){ + cpuid(0, &cpuid_level, &ebx, &ecx, &edx); + + if (cpuid_level > 1) { +- ++ int numcalls =0 ; + cpuid(2, &eax, &ebx, &ecx, &edx); +- ++ numcalls = BITMASK(eax, 0, 0xff); //FIXME some systems may require repeated calls to read all entries + info[ 0] = BITMASK(eax, 8, 0xff); + info[ 1] = BITMASK(eax, 16, 0xff); + info[ 2] = BITMASK(eax, 24, 0xff); +@@ -335,7 +359,6 @@ int get_cacheinfo(int type, cache_info_t *cacheinfo){ + info[14] = BITMASK(edx, 24, 0xff); + + for (i = 0; i < 15; i++){ +- + switch (info[i]){ + + /* This table is from http://www.sandpile.org/ia32/cpuid.htm */ +@@ -637,12 +660,13 @@ int get_cacheinfo(int type, cache_info_t *cacheinfo){ + LD1.linesize = 64; + break; + case 0x63 : +- DTB.size = 2048; +- DTB.associative = 4; +- DTB.linesize = 32; +- LDTB.size = 4096; +- LDTB.associative= 4; +- LDTB.linesize = 32; ++ DTB.size = 2048; ++ DTB.associative = 4; ++ DTB.linesize = 32; ++ LDTB.size = 4096; ++ LDTB.associative= 4; ++ LDTB.linesize = 32; ++ break; + case 0x66 : + LD1.size = 8; + LD1.associative = 4; +@@ -675,12 +699,13 @@ int get_cacheinfo(int type, cache_info_t *cacheinfo){ + LC1.associative = 8; + break; + case 0x76 : +- ITB.size = 2048; +- ITB.associative = 0; +- ITB.linesize = 8; +- LITB.size = 4096; +- LITB.associative= 0; +- LITB.linesize = 8; ++ ITB.size = 2048; ++ ITB.associative = 0; ++ ITB.linesize = 8; ++ LITB.size = 4096; ++ LITB.associative= 0; ++ LITB.linesize = 8; ++ break; + case 0x77 : + LC1.size = 16; + LC1.associative = 4; +@@ -891,6 +916,68 @@ int get_cacheinfo(int type, cache_info_t *cacheinfo){ + } + + if (get_vendor() == VENDOR_INTEL) { ++ if(LD1.size<=0 || LC1.size<=0){ ++ //If we didn't detect L1 correctly before, ++ int count; ++ for (count=0;count <4;count++) { ++ cpuid_count(4, count, &eax, &ebx, &ecx, &edx); ++ switch (eax &0x1f) { ++ case 0: ++ continue; ++ case 1: ++ case 3: ++ { ++ switch ((eax >>5) &0x07) ++ { ++ case 1: ++ { ++// fprintf(stderr,"L1 data cache...\n"); ++ int sets = ecx+1; ++ int lines = (ebx & 0x0fff) +1; ++ ebx>>=12; ++ int part = (ebx&0x03ff)+1; ++ ebx >>=10; ++ int assoc = (ebx&0x03ff)+1; ++ LD1.size = (assoc*part*lines*sets)/1024; ++ LD1.associative = assoc; ++ LD1.linesize= lines; ++ break; ++ } ++ default: ++ break; ++ } ++ break; ++ } ++ case 2: ++ { ++ switch ((eax >>5) &0x07) ++ { ++ case 1: ++ { ++// fprintf(stderr,"L1 instruction cache...\n"); ++ int sets = ecx+1; ++ int lines = (ebx & 0x0fff) +1; ++ ebx>>=12; ++ int part = (ebx&0x03ff)+1; ++ ebx >>=10; ++ int assoc = (ebx&0x03ff)+1; ++ LC1.size = (assoc*part*lines*sets)/1024; ++ LC1.associative = assoc; ++ LC1.linesize= lines; ++ break; ++ } ++ default: ++ break; ++ } ++ break; ++ ++ } ++ default: ++ break; ++ } ++ } ++ } ++ + cpuid(0x80000000, &cpuid_level, &ebx, &ecx, &edx); + if (cpuid_level >= 0x80000006) { + if(L2.size<=0){ diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_revert-honor-cpuset.patch b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_revert-honor-cpuset.patch new file mode 100644 index 0000000000..240b757a97 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20_revert-honor-cpuset.patch @@ -0,0 +1,135 @@ +revert changes to honor cgroup/cpuset limits that was merged prematurely in OpenBLAS 0.2.20 +see https://github.com/xianyi/OpenBLAS/pull/1247 +diff --git a/driver/others/init.c b/driver/others/init.c +index 4c75d72e4..3e6176967 100644 +--- a/driver/others/init.c ++++ b/driver/others/init.c +@@ -778,11 +778,11 @@ static int initialized = 0; + void gotoblas_affinity_init(void) { + + int cpu, num_avail; +-#ifndef USE_OPENMP ++#ifndef USE_OPENMP + cpu_set_t cpu_mask; + #endif + int i; +- ++ + if (initialized) return; + + initialized = 1; +@@ -826,54 +826,15 @@ void gotoblas_affinity_init(void) { + common -> shmid = pshmid; + + if (common -> magic != SH_MAGIC) { +- cpu_set_t *cpusetp; +- int nums; +- int ret; +- + #ifdef DEBUG + fprintf(stderr, "Shared Memory Initialization.\n"); + #endif + + //returns the number of processors which are currently online +- +- nums = sysconf(_SC_NPROCESSORS_CONF); +- +-#if !defined(__GLIBC_PREREQ) || !__GLIBC_PREREQ(2, 3) +- common->num_procs = nums; +-#elif __GLIBC_PREREQ(2, 7) +- cpusetp = CPU_ALLOC(nums); +- if (cpusetp == NULL) { +- common->num_procs = nums; +- } else { +- size_t size; +- size = CPU_ALLOC_SIZE(nums); +- ret = sched_getaffinity(0,size,cpusetp); +- if (ret!=0) +- common->num_procs = nums; +- else +- common->num_procs = CPU_COUNT_S(size,cpusetp); +- } +- CPU_FREE(cpusetp); +-#else +- ret = sched_getaffinity(0,sizeof(cpu_set_t), cpusetp); +- if (ret!=0) { +- common->num_procs = nums; +- } else { +-#if !__GLIBC_PREREQ(2, 6) +- int i; +- int n = 0; +- for (i=0;inum_procs = n; +- } +-#else +- common->num_procs = CPU_COUNT(sizeof(cpu_set_t),cpusetp); +-#endif +- +-#endif ++ common -> num_procs = sysconf(_SC_NPROCESSORS_CONF);; + + if(common -> num_procs > MAX_CPUS) { +- fprintf(stderr, "\nOpenBLAS Warning : The number of CPU/Cores(%d) is beyond the limit(%d). Terminated.\n", common->num_procs, MAX_CPUS); ++ fprintf(stderr, "\nOpenBLAS Warining : The number of CPU/Cores(%d) is beyond the limit(%d). Terminated.\n", common->num_procs, MAX_CPUS); + exit(1); + } + +@@ -886,7 +847,7 @@ void gotoblas_affinity_init(void) { + if (common -> num_nodes > 1) numa_mapping(); + + common -> final_num_procs = 0; +- for(i = 0; i < common -> avail_count; i++) common -> final_num_procs += rcount(common -> avail[i]) + 1; //Make the max cpu number. ++ for(i = 0; i < common -> avail_count; i++) common -> final_num_procs += rcount(common -> avail[i]) + 1; //Make the max cpu number. + + for (cpu = 0; cpu < common -> final_num_procs; cpu ++) common -> cpu_use[cpu] = 0; + +diff --git a/driver/others/memory.c b/driver/others/memory.c +index 38d063715..916950315 100644 +--- a/driver/others/memory.c ++++ b/driver/others/memory.c +@@ -175,44 +175,7 @@ int get_num_procs(void); + #else + int get_num_procs(void) { + static int nums = 0; +-cpu_set_t *cpusetp; +-size_t size; +-int ret; +-int i,n; +- + if (!nums) nums = sysconf(_SC_NPROCESSORS_CONF); +-#if !defined(OS_LINUX) +- return nums; +-#endif +- +-#if !defined(__GLIBC_PREREQ) +- return nums; +-#endif +-#if !__GLIBC_PREREQ(2, 3) +- return nums; +-#endif +- +-#if !__GLIBC_PREREQ(2, 7) +- ret = sched_getaffinity(0,sizeof(cpu_set_t), cpusetp); +- if (ret!=0) return nums; +- n=0; +-#if !__GLIBC_PREREQ(2, 6) +- for (i=0;i Date: Wed, 23 Aug 2017 16:13:17 +0200 Subject: [PATCH 407/845] don't specify NO_AFFINITY=1, also specify USE_OPENMP=1 for OpenBLAS 0.2.20 (cfr. #4524) --- .../easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb index 1b9ef9d2f9..756eeba375 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb @@ -34,8 +34,8 @@ patches = [ skipsteps = ['configure'] -buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' -installopts = "USE_THREAD=1 PREFIX=%(installdir)s" +buildopts = 'BINARY=64 USE_THREAD=1 USE_OPENMP=1 CC="$CC" FC="$F77"' +installopts = "USE_THREAD=1 USE_OPENMP=1 PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below # runtest = 'PATH=.:$PATH lapack-timing' -- GitLab From cb502ba11a8014b593d6633182a7438e3abe36a9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 23 Aug 2017 16:15:52 +0200 Subject: [PATCH 408/845] Use github tagged tarball --- .../s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb index 339fff4b72..23f71d7d40 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb @@ -10,7 +10,7 @@ adapt to alternative splicing and different expression level among transcripts. toolchain = {'name': 'intel', 'version': '2017a'} -sources = ['4e25da665b38172.tar.gz'] # no releases tagged on github +sources = ['%(version)s.tar.gz'] source_urls = ['https://github.com/aquaskyline/SOAPdenovo-Trans/archive/'] patches = ['fix-makefiles-%(version)s.patch'] -- GitLab From cd4fa66e00de701eeef52eecc6960d2301180985 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 23 Aug 2017 16:29:58 +0200 Subject: [PATCH 409/845] remove undeeded numactl-2.0.11-GCC-6.4.0-2.28.eb, existing numactl-2.0.11-GCCcore-6.4.0.eb suffices --- .../numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb | 22 ------------------- 1 file changed, 22 deletions(-) delete mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb deleted file mode 100644 index 775fb405c3..0000000000 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.4.0-2.28.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'numactl' -version = '2.0.11' - -homepage = 'http://oss.sgi.com/projects/libnuma/' -description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. -It does this by supplying a NUMA memory policy to the operating system before running your program. -The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" - -toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} - -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] -checksums = ['450c091235f891ee874a8651b179c30f57a1391ca5c4673354740ba65e527861'] - -sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] -} - -moduleclass = 'tools' -- GitLab From 719d650d2f0800633f46817cd5929ff833909a49 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 23 Aug 2017 16:38:58 +0200 Subject: [PATCH 410/845] add back accidentally removed OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch --- .../OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch new file mode 100644 index 0000000000..54c1b5525d --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19_LAPACK-3.7.0-fixes.patch @@ -0,0 +1,35 @@ +fixes to combine OpenBLAS 0.2.19 with LAPACK 3.7.0 +* upstream bugfix in Makefile for LAPACK 3.7.0, cfr. https://github.com/Reference-LAPACK/lapack/commit/c5788233f95fed2c7f008ea079e8257a85348287 +* fix copying of lapacke_mangling.h, since it was renamed in LAPACK 3.7.0 +author: Kenneth Hoste (HPC-UGent) +--- OpenBLAS-0.2.19/Makefile.install.orig 2017-01-04 15:51:12.483541471 +0100 ++++ OpenBLAS-0.2.19/Makefile.install 2017-01-04 15:51:27.583647000 +0100 +@@ -50,7 +50,7 @@ + @echo Copying LAPACKE header files to $(DESTDIR)$(OPENBLAS_INCLUDE_DIR) + @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke.h" + @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_config.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_config.h" +- @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_mangling_with_flags.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_mangling.h" ++ @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_mangling.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_mangling.h" + @-install -pm644 $(NETLIB_LAPACK_DIR)/LAPACKE/include/lapacke_utils.h "$(DESTDIR)$(OPENBLAS_INCLUDE_DIR)/lapacke_utils.h" + endif + +--- OpenBLAS-0.2.19/lapack-netlib/SRC/CMakeLists.txt.orig ++++ OpenBLAS-0.2.19/lapack-netlib/SRC/CMakeLists.txt +@@ -454,7 +454,6 @@ set(ZLASRC + zgelqt.f zgelqt3.f zgemlqt.f + zgetsls.f zgeqr.f zlatsqr.f zlamtsqr.f zgemqr.f + zgelq.f zlaswlq.f zlamswlq.f zgemlq.f +- ztplqt.f ztplqt2.f ztpmlqt.f + zhetrd_2stage.f zhetrd_he2hb.f zhetrd_hb2st.F zhb2st_kernels.f + zheevd_2stage.f zheev_2stage.f zheevx_2stage.f zheevr_2stage.f + zhbev_2stage.f zhbevx_2stage.f zhbevd_2stage.f zhegv_2stage.f) +--- OpenBLAS-0.2.19/lapack-netlib/SRC/Makefile.orig ++++ OpenBLAS-0.2.19/lapack-netlib/SRC/Makefile +@@ -464,7 +464,6 @@ ZLASRC = \ + zgelqt.o zgelqt3.o zgemlqt.o \ + zgetsls.o zgeqr.o zlatsqr.o zlamtsqr.o zgemqr.o \ + zgelq.o zlaswlq.o zlamswlq.o zgemlq.o \ +- ztplqt.o ztplqt2.o ztpmlqt.o \ + zhetrd_2stage.o zhetrd_he2hb.o zhetrd_hb2st.o zhb2st_kernels.o \ + zheevd_2stage.o zheev_2stage.o zheevx_2stage.o zheevr_2stage.o \ + zhbev_2stage.o zhbevx_2stage.o zhbevd_2stage.o zhegv_2stage.o -- GitLab From 4050d91e64ff5df26be246f647645798ef6a0ff4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 23 Aug 2017 17:16:15 +0200 Subject: [PATCH 411/845] fix too long line in OpenBLAS 0.2.20 easyconfig --- .../easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb index 756eeba375..5b7ec851fc 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.20-GCC-6.4.0-2.28.eb @@ -21,7 +21,8 @@ checksums = [ '5ef38b15d9c652985774869efd548b8e3e972e1e99475c673b25537ed7bcf394', # v0.2.20.tar.gz (OpenBLAS) 'f328d88b7fa97722f271d7d0cfea1c220e0f8e5ed5ff01d8ef1eb51d6f4243a1', # large.tgz '999c65f8ea8bd4eac7f1c7f3463d4946917afd20a997807300fe35d70122f3af', # timing.tgz - '1d043e4838ec1f90b2b49318b780e3ab13b46133cb72a8d83eb0e3b1b056c4d6', # OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch + # OpenBLAS-0.2.20_fix-Intel-L1-cache-size-detection.patch + '1d043e4838ec1f90b2b49318b780e3ab13b46133cb72a8d83eb0e3b1b056c4d6', '1e6a046ab658c6e0b351de901d2812db28c2042f9f141416144c2faaf71fbb37', # OpenBLAS-0.2.20_revert-honor-cpuset.patch ] -- GitLab From b38703d0ff80c1dbec4975a3666888b1c0feba0d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 23 Aug 2017 19:39:38 +0200 Subject: [PATCH 412/845] add sanity check to Gdk-Pixbuf 2.36.8 easyconfig --- .../g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb index ab5bc95377..b403b98025 100644 --- a/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.8-intel-2017a.eb @@ -30,6 +30,11 @@ dependencies = [ configopts = "--disable-maintainer-mode --enable-debug=no --enable-introspection=yes " configopts += "--disable-Bsymbolic --without-gdiplus --enable-shared --enable-static" +sanity_check_paths = { + 'files': ['lib/libgdk_pixbuf-%(version_major)s.0.a', 'lib/libgdk_pixbuf-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include/gdk-pixbuf-%(version_major)s.0', 'lib/gdk-pixbuf-%(version_major)s.0', 'share'], +} + modextrapaths = { 'XDG_DATA_DIRS': 'share', } -- GitLab From f98a697ef596b916fb8849b5185e890118272cf7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 15:16:52 +0200 Subject: [PATCH 413/845] adding easyconfigs: MERCKX-20170330-intel-2017a-Python-2.7.13.eb --- ...RCKX-20170330-intel-2017a-Python-2.7.13.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/m/MERCKX/MERCKX-20170330-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/m/MERCKX/MERCKX-20170330-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/MERCKX/MERCKX-20170330-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..50c7e7e7b5 --- /dev/null +++ b/easybuild/easyconfigs/m/MERCKX/MERCKX-20170330-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,34 @@ +easyblock = 'Tarball' + +name = 'MERCKX' +version = '20170330' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/madewild/MERCKX' +description = "Multilingual Entity/Resource Combiner & Knowledge eXtractor" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/madewild/MERCKX/archive/'] +sources = [{'filename': SOURCE_TAR_GZ, 'download_filename': '03b88e8.tar.gz'}] +checksums = ['f27480585c8bafac51d348c5a3916c18ed453592bc799903f2bb84dbc4134171'] + +dependencies = [ + ('Python', '2.7.13'), + ('NLTK', '3.2.4', versionsuffix), +] + +postinstallcmds = [ + "chmod a+x %(installdir)s/merckx*.py", + "sed -i 's/python merckx-init.py/merckx-init.py/' %(installdir)s/merckx-init.sh", +] + +sanity_check_paths = { + 'files': ['merckx.py', 'merckx-init.py', 'merckx-init.sh'], + 'dirs': [], +} +sanity_check_commands = ['merckx.py --help'] + +modextrapaths = {'PATH': ''} + +moduleclass = 'tools' -- GitLab From 817d98cb670a3d680cf2ab3aa27613c38db82421 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 15:34:36 +0200 Subject: [PATCH 414/845] adding easyconfigs: CD-HIT-4.6.8-intel-2017a.eb --- .../c/CD-HIT/CD-HIT-4.6.8-intel-2017a.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.8-intel-2017a.eb diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.8-intel-2017a.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.8-intel-2017a.eb new file mode 100644 index 0000000000..4985a93e26 --- /dev/null +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.8-intel-2017a.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'MakeCp' + +name = 'CD-HIT' +version = '4.6.8' + +homepage = 'http://weizhong-lab.ucsd.edu/cd-hit/' +description = """ CD-HIT is a very widely used program for clustering and + comparing protein or nucleotide sequences.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/weizhongli/cdhit/archive/'] +sources = ['V%(version)s.tar.gz'] +checksums = ['37d685e4aa849314401805fe4d4db707e1d06070368475e313d6f3cb8fb65949'] + +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + +# put here the list of generated executables when compiling +list_of_executables = ['cd-hit', 'cd-hit-est', 'cd-hit-2d', 'cd-hit-est-2d', 'cd-hit-div', 'cd-hit-454'] + +# this is the real EasyBuild line to copy all the executables and perl scripts to "bin" +files_to_copy = [(list_of_executables, 'bin'), (['*.pl'], 'bin'), 'README', 'doc', 'license.txt'] + +postinstallcmds = ["sed -i 's@#!/usr/bin/perl@/usr/bin/env perl@' %(installdir)s/bin/*.pl"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 6a89b1d3350f37aa2cd3fe286326a0560c095a57 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 15:38:26 +0200 Subject: [PATCH 415/845] add easyconfig for NLTK 3.2.4 as dep for MERCKX --- .../NLTK-3.2.4-intel-2017a-Python-2.7.13.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/n/NLTK/NLTK-3.2.4-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/n/NLTK/NLTK-3.2.4-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/NLTK/NLTK-3.2.4-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..d48fd45a34 --- /dev/null +++ b/easybuild/easyconfigs/n/NLTK/NLTK-3.2.4-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'NLTK' +version = '3.2.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.nltk.org/' +description = "NLTK is a leading platform for building Python programs to work with human language data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8682ae52f5de4f2ba7b77bd78222a38575ad01ef29946214b254dfdf93a3a0eb'] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'data' -- GitLab From aed638c12fb80dac99c5c249282cd4b330d70534 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 16:00:35 +0200 Subject: [PATCH 416/845] adding easyconfigs: OpenRefine-2.7-Java-1.8.0_121.eb --- .../OpenRefine-2.7-Java-1.8.0_121.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb diff --git a/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb b/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb new file mode 100644 index 0000000000..393c2fdcb0 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb @@ -0,0 +1,33 @@ +easyblock = 'PackedBinary' + +name = 'OpenRefine' +version = '2.7' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'https://github.com/OpenRefine/OpenRefine' +description = """OpenRefine is a power tool that allows you to load data, understand it, clean it up, reconcile it, + and augment it with data coming from the web.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/OpenRefine/OpenRefine/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['16f8c86db061d1c24f1fc64897eb23742e73415a019dd8ea3f39782de833146b'] + +builddependencies = [ + ('ant', '1.10.1', '-Java-%(javaver)s', True), +] +dependencies = [ + ('Java', '1.8.0_121'), +] + +install_cmd = "cp -a OpenRefine-%(version)s/* %(installdir)s && cd %(installdir)s && ./refine build" + +sanity_check_paths = { + 'files': ['refine'], + 'dirs': ['server/classes'], +} + +modextrapaths = {'PATH': 'refine'} + +moduleclass = 'tools' -- GitLab From 66050db403caa2dae56b01515e55a9f4e3c6e12b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 17:12:51 +0200 Subject: [PATCH 417/845] bump Java dep in OpenRefine to 1.8.0_144 --- .../a/ant/ant-1.10.1-Java-1.8.0_144.eb | 27 +++++++++++++++ .../j/JUnit/JUnit-4.12-Java-1.8.0_144.eb | 23 +++++++++++++ .../OpenRefine-2.7-Java-1.8.0_144.eb | 33 +++++++++++++++++++ 3 files changed, 83 insertions(+) create mode 100644 easybuild/easyconfigs/a/ant/ant-1.10.1-Java-1.8.0_144.eb create mode 100644 easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_144.eb create mode 100644 easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_144.eb diff --git a/easybuild/easyconfigs/a/ant/ant-1.10.1-Java-1.8.0_144.eb b/easybuild/easyconfigs/a/ant/ant-1.10.1-Java-1.8.0_144.eb new file mode 100644 index 0000000000..77159ab0f1 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.10.1-Java-1.8.0_144.eb @@ -0,0 +1,27 @@ +name = 'ant' +version = '1.10.1' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in + build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of + Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +checksums = ['68f7ced0aa15d1f9f672f23d67c86deaf728e9576936313cfbff4f7a0e6ce382'] + +dependencies = [('Java', '1.8.0_144')] + +builddependencies = [('JUnit', '4.12', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +modextravars = {'ANT_HOME': '%(installdir)s'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_144.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_144.eb new file mode 100644 index 0000000000..4d57c600d0 --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_144.eb @@ -0,0 +1,23 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.12' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] +sources = ['%(namelower)s-%(version)s.jar'] +checksums = ['59721f0805e223d84b90677887d9ff567dc534d7c502ca903c0c2b17f05c116a'] + +dependencies = [('Java', '1.8.0_144')] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_144.eb b/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_144.eb new file mode 100644 index 0000000000..43fc8d1f70 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_144.eb @@ -0,0 +1,33 @@ +easyblock = 'PackedBinary' + +name = 'OpenRefine' +version = '2.7' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'https://github.com/OpenRefine/OpenRefine' +description = """OpenRefine is a power tool that allows you to load data, understand it, clean it up, reconcile it, + and augment it with data coming from the web.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/OpenRefine/OpenRefine/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['16f8c86db061d1c24f1fc64897eb23742e73415a019dd8ea3f39782de833146b'] + +builddependencies = [ + ('ant', '1.10.1', '-Java-%(javaver)s', True), +] +dependencies = [ + ('Java', '1.8.0_144'), +] + +install_cmd = "cp -a OpenRefine-%(version)s/* %(installdir)s && cd %(installdir)s && ./refine build" + +sanity_check_paths = { + 'files': ['refine'], + 'dirs': ['server/classes'], +} + +modextrapaths = {'PATH': 'refine'} + +moduleclass = 'tools' -- GitLab From 18c4cc19ec5c3c48d2b3d4f100351f0af0f5a861 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 17:16:25 +0200 Subject: [PATCH 418/845] remove OpenRefine easyconfig with old Java dep --- .../OpenRefine-2.7-Java-1.8.0_121.eb | 33 ------------------- 1 file changed, 33 deletions(-) delete mode 100644 easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb diff --git a/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb b/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb deleted file mode 100644 index 393c2fdcb0..0000000000 --- a/easybuild/easyconfigs/o/OpenRefine/OpenRefine-2.7-Java-1.8.0_121.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'OpenRefine' -version = '2.7' -versionsuffix = '-Java-%(javaver)s' - -homepage = 'https://github.com/OpenRefine/OpenRefine' -description = """OpenRefine is a power tool that allows you to load data, understand it, clean it up, reconcile it, - and augment it with data coming from the web.""" - -toolchain = {'name': 'dummy', 'version': ''} - -source_urls = ['https://github.com/OpenRefine/OpenRefine/archive/'] -sources = ['%(version)s.tar.gz'] -checksums = ['16f8c86db061d1c24f1fc64897eb23742e73415a019dd8ea3f39782de833146b'] - -builddependencies = [ - ('ant', '1.10.1', '-Java-%(javaver)s', True), -] -dependencies = [ - ('Java', '1.8.0_121'), -] - -install_cmd = "cp -a OpenRefine-%(version)s/* %(installdir)s && cd %(installdir)s && ./refine build" - -sanity_check_paths = { - 'files': ['refine'], - 'dirs': ['server/classes'], -} - -modextrapaths = {'PATH': 'refine'} - -moduleclass = 'tools' -- GitLab From 1852cc2ce64030d518f4d15a821dbfc567495bc1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 18:12:39 +0200 Subject: [PATCH 419/845] adding easyconfigs: OpenNLP-1.8.1.eb --- .../easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb diff --git a/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb b/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb new file mode 100644 index 0000000000..e5c7079e52 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb @@ -0,0 +1,33 @@ +easyblock = 'PackedBinary' + +name = 'OpenNLP' +version = '1.8.1' + +homepage = 'https://opennlp.apache.org/' +description = """The Apache OpenNLP library is a machine learning based toolkit for the processing of + natural language text.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [APACHE_SOURCE + '/%(namelower)s-%(version)s'] +sources = ['apache-opennlp-%(version)s-src.tar.gz'] +checksums = ['f0a09a499503dae318df28b4c78ea9eb6f9c3d47fbaa4cc019bb647af3d0567e'] + +dependencies = [ + ('Java', '1.8.0_144'), + ('Maven', '3.5.0'), # both build & runtime dep +] + +install_cmd = "cd apache-opennlp-%(version)s-src && mvn install -B && " +install_cmd += "tar xfvz opennlp-distr/target/apache-opennlp-1.8.1-bin.tar.gz && " +install_cmd += "cp -a apache-opennlp-%(version)s/* %(installdir)s" + +sanity_check_paths = { + 'files': ['bin/opennlp'], + 'dirs': ['lib'], +} +sanity_check_commands = ['opennlp'] + +modextravars = {'OPENNLP_HOME': '%(installdir)s'} + +moduleclass = 'lib' -- GitLab From 40e376a158eda204d1683840bac15d5e584ccc68 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 24 Aug 2017 18:27:24 +0200 Subject: [PATCH 420/845] Maven is only a build dep for OpenNLP --- easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb b/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb index e5c7079e52..00bf00b919 100644 --- a/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb +++ b/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb @@ -13,10 +13,8 @@ source_urls = [APACHE_SOURCE + '/%(namelower)s-%(version)s'] sources = ['apache-opennlp-%(version)s-src.tar.gz'] checksums = ['f0a09a499503dae318df28b4c78ea9eb6f9c3d47fbaa4cc019bb647af3d0567e'] -dependencies = [ - ('Java', '1.8.0_144'), - ('Maven', '3.5.0'), # both build & runtime dep -] +builddependencies = [('Maven', '3.5.0')] +dependencies = [('Java', '1.8.0_144')] install_cmd = "cd apache-opennlp-%(version)s-src && mvn install -B && " install_cmd += "tar xfvz opennlp-distr/target/apache-opennlp-1.8.1-bin.tar.gz && " -- GitLab From 3037f86b525fbe146307106ecd8084ae2807886a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 25 Aug 2017 12:00:34 +0200 Subject: [PATCH 421/845] avoid that /Users/kehoste/.m2 is abused by Maven when installing OpenNLP --- easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb b/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb index 00bf00b919..19f1ce98bb 100644 --- a/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb +++ b/easybuild/easyconfigs/o/OpenNLP/OpenNLP-1.8.1.eb @@ -16,7 +16,7 @@ checksums = ['f0a09a499503dae318df28b4c78ea9eb6f9c3d47fbaa4cc019bb647af3d0567e'] builddependencies = [('Maven', '3.5.0')] dependencies = [('Java', '1.8.0_144')] -install_cmd = "cd apache-opennlp-%(version)s-src && mvn install -B && " +install_cmd = "cd apache-opennlp-%(version)s-src && mvn install -Dmaven.repo.local=%(builddir)s/m2 -B && " install_cmd += "tar xfvz opennlp-distr/target/apache-opennlp-1.8.1-bin.tar.gz && " install_cmd += "cp -a apache-opennlp-%(version)s/* %(installdir)s" -- GitLab From 4ab1282e9a4acb12b4525030f4d27f44cbd7a51e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 25 Aug 2017 12:13:48 +0200 Subject: [PATCH 422/845] include timereg as extension in R 3.4.0 easyconfig --- easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 8ec992e75a..5ba7780140 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -553,6 +553,7 @@ exts_list = [ ('rrcov', '1.4-3', ext_options), ('WriteXLS', '4.0.0', ext_options), ('mpath', '0.2-4', ext_options), + ('timereg', '1.9.1', ext_options), ] moduleclass = 'lang' -- GitLab From 0b749943cf9fd8ab527e22bbeb1b994aaa03f9cf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 25 Aug 2017 13:13:52 +0200 Subject: [PATCH 423/845] adding easyconfigs: Tika-1.16.eb --- easybuild/easyconfigs/t/Tika/Tika-1.16.eb | 28 +++++++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tika/Tika-1.16.eb diff --git a/easybuild/easyconfigs/t/Tika/Tika-1.16.eb b/easybuild/easyconfigs/t/Tika/Tika-1.16.eb new file mode 100644 index 0000000000..d0d0317869 --- /dev/null +++ b/easybuild/easyconfigs/t/Tika/Tika-1.16.eb @@ -0,0 +1,28 @@ +easyblock = 'PackedBinary' + +name = 'Tika' +version = '1.16' + +homepage = 'https://tika.apache.org/' +description = """The Apache Tika toolkit detects and extracts metadata and text from over a thousand different + file types (such as PPT, XLS, and PDF).""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [APACHE_SOURCE] +sources = ['tika-%(version)s-src.zip'] +checksums = ['7da47d09c48b2cd1b9acf4eea89d7f4a24d43388a867e4126cf35ee44336a260'] + +builddependencies = [('Maven', '3.5.0')] +dependencies = [('Java', '1.8.0_144')] + +install_cmd = "cd tika-%(version)s && mvn install -Dmaven.repo.local=%(builddir)s/m2 -DskipTests -B && " +install_cmd += "cp -a tika-app/target/tika-app-%(version)s.jar %(installdir)s && " +install_cmd += "cp -a tika-server/target/tika-server-%(version)s.jar %(installdir)s" + +sanity_check_paths = { + 'files': ['tika-app-%(version)s.jar', 'tika-server-%(version)s.jar'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 7e0fbf00bda90b6d5e807340bc33a3fe87cce7c6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 25 Aug 2017 13:17:41 +0200 Subject: [PATCH 424/845] adding easyconfigs: Lucene-Geo-Gazetteer-20170718.eb --- .../Lucene-Geo-Gazetteer-20170718.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb diff --git a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb new file mode 100644 index 0000000000..5d3e6d1cda --- /dev/null +++ b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb @@ -0,0 +1,38 @@ +easyblock = 'PackedBinary' + +name = 'Lucene-Geo-Gazetteer' +version = '20170718' + +homepage = 'https://github.com/chrismattmann/lucene-geo-gazetteer' +description = """A command line gazetteer built around the Geonames.org dataset, that uses the Apache Lucene library + to create a searchable gazetter.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/chrismattmann/lucene-geo-gazetteer/archive/'] +sources = [{'filename': SOURCE_TAR_GZ, 'download_filename': '6c38272.tar.gz'}] +checksums = ['2ed355bfdcf865d815df9dc52ee747eeb8a15d065ef159ebf933ad36e1555ad4'] + +builddependencies = [('Maven', '3.5.0')] +dependencies = [('Java', '')] + +unpack_options = '--strip-components=1' + +install_cmd = "cp -a * %(installdir)s && cd %(installdir)s && " +install_cmd += "mvn install -Dmaven.repo.local=%(builddir)s/m2 -B assembly:assembly" + +# strip out hardcoded value for -i option, since user can not write to install directory +postinstallcmds = [ + "sed -i.bk 's/-i \$DIR_PATH[^ ]*//g' %(installdir)s/src/main/bin/lucene-geo-gazetteer", + "rm %(installdir)s/src/main/bin/lucene-geo-gazetteer.bk", +] + +sanity_check_paths = { + 'files': ['src/main/bin/lucene-geo-gazetteer'], + 'dirs': [], +} +sanity_check_commands = ["lucene-geo-gazetteer --help | grep 'usage: lucene-geo-gazetteer'"] + +modextrapaths = {'PATH': 'src/main/bin'} + +moduleclass = 'tools' -- GitLab From 89ca2019a6c973181827641b5186b181d17da65e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 25 Aug 2017 14:00:37 +0200 Subject: [PATCH 425/845] fix Java version + type in description for Lucene-Geo-Gazetteer --- .../l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb index 5d3e6d1cda..27896fdb17 100644 --- a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb +++ b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb @@ -5,7 +5,7 @@ version = '20170718' homepage = 'https://github.com/chrismattmann/lucene-geo-gazetteer' description = """A command line gazetteer built around the Geonames.org dataset, that uses the Apache Lucene library - to create a searchable gazetter.""" + to create a searchable gazetteer.""" toolchain = {'name': 'dummy', 'version': ''} @@ -14,7 +14,7 @@ sources = [{'filename': SOURCE_TAR_GZ, 'download_filename': '6c38272.tar.gz'}] checksums = ['2ed355bfdcf865d815df9dc52ee747eeb8a15d065ef159ebf933ad36e1555ad4'] builddependencies = [('Maven', '3.5.0')] -dependencies = [('Java', '')] +dependencies = [('Java', '1.8.0_144')] unpack_options = '--strip-components=1' -- GitLab From e5816d394c6b90bb20d8bcbaca5a4c966462ca13 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 25 Aug 2017 15:01:09 +0200 Subject: [PATCH 426/845] remove trailing whitespace --- .../l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb index 27896fdb17..c21c6baf85 100644 --- a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb +++ b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb @@ -1,7 +1,7 @@ easyblock = 'PackedBinary' name = 'Lucene-Geo-Gazetteer' -version = '20170718' +version = '20170718' homepage = 'https://github.com/chrismattmann/lucene-geo-gazetteer' description = """A command line gazetteer built around the Geonames.org dataset, that uses the Apache Lucene library -- GitLab From 8d0818784d4922246ea5a9846a46a657b2097974 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 28 Aug 2017 09:20:07 +0200 Subject: [PATCH 427/845] add xkeyboard-config component in X11 bundle + intltool as required build dep --- .../intltool-0.51.0-foss-2016b-Perl-5.24.0.eb | 25 +++++++++++++++++ .../x/X11/X11-20160819-foss-2016b.eb | 5 +++- ...L-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb | 27 +++++++++++++++++++ 3 files changed, 56 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb new file mode 100644 index 0000000000..f1ede983f8 --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.24.0' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-foss-2016b.eb b/easybuild/easyconfigs/x/X11/X11-20160819-foss-2016b.eb index fbaa5cf2db..d5853ed4cc 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-foss-2016b.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-foss-2016b.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] builddependencies = [ @@ -21,6 +22,7 @@ builddependencies = [ ('Bison', '3.0.4'), ('gettext', '0.19.8'), ('pkg-config', '0.29.1'), + ('intltool', '0.51.0', '-Perl-5.24.0') ] dependencies = [ ('freetype', '2.6.5'), @@ -113,6 +115,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), ('xcb-util-wm', '0.4.1', common_specs), ('xcb-util-cursor', '0.1.3', common_specs), + ('xkeyboard-config', '2.18', common_specs), ] # Python is required for xcb-proto @@ -127,7 +130,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb new file mode 100644 index 0000000000..8bc5e18fb1 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Perl', '5.24.0'), + ('expat', '2.2.0') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' -- GitLab From 01eaf0a4725f0c8afc02cbc04b26a0c35805d7b5 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Mon, 28 Aug 2017 15:10:15 +0200 Subject: [PATCH 428/845] Update ncurses to not build a separate libtinfo but provide a soft link instead. Force linking to ncurses in libreadline --- easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb | 2 +- easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb | 10 ++++++---- 2 files changed, 7 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb index 36625b1717..501aa1480f 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb @@ -20,7 +20,7 @@ patches = ['libreadline-%(version)s-bugfix.patch'] dependencies = [('ncurses', '6.0')] # for the termcap symbols, use EB ncurses -preconfigopts = "env LDFLAGS='-lncurses'" +buildopts = "SHLIB_LIBS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb index ce06be716d..70d6035d01 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -18,13 +18,15 @@ patches = ['ncurses-%(version)s_gcc-5.patch'] configopts = [ # default build - '--with-shared --enable-overwrite --with-termlib', + '--with-shared --enable-overwrite', # the UTF-8 enabled version (ncursesw) - '--with-shared --enable-overwrite --with-termlib ' + - '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' ] -libs = ["form", "menu", "ncurses", "panel", "tinfo"] +# Symlink to ncurses for libtinfo (since it can handle the API) so it doesn't get picked up from the OS +postinstallcmds = ["ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.so"] + +libs = ["form", "menu", "ncurses", "panel"] sanity_check_paths = { 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses%(version_major)s-config", "reset", "tabs", "tic", "toe", "tput", "tset"]] + -- GitLab From af14f209a3566b26fe7b7f9e58d268a80c5bc222 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Mon, 28 Aug 2017 15:29:44 +0200 Subject: [PATCH 429/845] For pic code, need to set CFLAGS when using dummy --- easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb index 501aa1480f..a447c94536 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb @@ -10,7 +10,6 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'dummy', 'version': ''} -toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] @@ -19,8 +18,11 @@ patches = ['libreadline-%(version)s-bugfix.patch'] dependencies = [('ncurses', '6.0')] +# need to take care of $CFLAGS ourselves with dummy toolchain +# we need to add -fPIC, but should also include -O* option to avoid compiling with -O0 (default for GCC) +buildopts = 'CFLAGS="-O2 -fPIC" ' # for the termcap symbols, use EB ncurses -buildopts = "SHLIB_LIBS='-lncurses'" +buildopts += "SHLIB_LIBS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + -- GitLab From 6c903cdfb3bbe9f25ea02e34b29252e0242525db Mon Sep 17 00:00:00 2001 From: ocaisa Date: Mon, 28 Aug 2017 15:31:28 +0200 Subject: [PATCH 430/845] For pic code need to set CFLAGS ourselves... when using dummy --- easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb index 70d6035d01..ffa0fa14ff 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -8,7 +8,7 @@ description = """The Ncurses (new curses) library is a free software emulation o and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] @@ -23,6 +23,10 @@ configopts = [ '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' ] +# need to take care of $CFLAGS ourselves with dummy toolchain +# we need to add -fPIC, but should also include -O* option to avoid compiling with -O0 (default for GCC) +buildopts = ['CFLAGS="-O2 -fPIC"', 'CFLAGS="-O2 -fPIC"'] + # Symlink to ncurses for libtinfo (since it can handle the API) so it doesn't get picked up from the OS postinstallcmds = ["ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.so"] -- GitLab From 3057402c95193819855022c708f32bc181d51acf Mon Sep 17 00:00:00 2001 From: ocaisa Date: Mon, 28 Aug 2017 15:31:47 +0200 Subject: [PATCH 431/845] Update ncurses-6.0.eb --- easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb index ffa0fa14ff..39eefbffc6 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -9,7 +9,6 @@ description = """The Ncurses (new curses) library is a free software emulation o function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" toolchain = {'name': 'dummy', 'version': ''} -toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] -- GitLab From 4eb6374295c7e1dbf1639ec9e88bd2df42807e2c Mon Sep 17 00:00:00 2001 From: ocaisa Date: Mon, 28 Aug 2017 16:03:42 +0200 Subject: [PATCH 432/845] Keep buildopts syntax consistent --- easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb index a447c94536..141b4c010a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3.eb @@ -20,7 +20,7 @@ dependencies = [('ncurses', '6.0')] # need to take care of $CFLAGS ourselves with dummy toolchain # we need to add -fPIC, but should also include -O* option to avoid compiling with -O0 (default for GCC) -buildopts = 'CFLAGS="-O2 -fPIC" ' +buildopts = "CFLAGS='-O2 -fPIC' " # for the termcap symbols, use EB ncurses buildopts += "SHLIB_LIBS='-lncurses'" -- GitLab From ab0d6033d41b349c574498be777e5cba51f8da41 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Mon, 28 Aug 2017 17:31:38 +0200 Subject: [PATCH 433/845] Do the symlinking for both .a and .so --- easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb index 39eefbffc6..65bcee84f5 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -27,7 +27,10 @@ configopts = [ buildopts = ['CFLAGS="-O2 -fPIC"', 'CFLAGS="-O2 -fPIC"'] # Symlink to ncurses for libtinfo (since it can handle the API) so it doesn't get picked up from the OS -postinstallcmds = ["ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.so"] +postinstallcmds = [ + "ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.so", + "ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.a" +] libs = ["form", "menu", "ncurses", "panel"] sanity_check_paths = { -- GitLab From 14e42a18b4942379b38bb3ea66ea67f09bc2251e Mon Sep 17 00:00:00 2001 From: ocaisa Date: Mon, 28 Aug 2017 17:34:26 +0200 Subject: [PATCH 434/845] Update ncurses-6.0.eb --- easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb index 65bcee84f5..6f86928521 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -29,7 +29,7 @@ buildopts = ['CFLAGS="-O2 -fPIC"', 'CFLAGS="-O2 -fPIC"'] # Symlink to ncurses for libtinfo (since it can handle the API) so it doesn't get picked up from the OS postinstallcmds = [ "ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.so", - "ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.a" + "ln -s %(installdir)s/lib/libncurses.a %(installdir)s/lib/libtinfo.a" ] libs = ["form", "menu", "ncurses", "panel"] -- GitLab From b979bc9f2a2bb279c45a3488a14334d5a2a745d9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 29 Aug 2017 15:36:41 +0200 Subject: [PATCH 435/845] less promotional descriptions for Intel compilers, MPI & MKL --- .../easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- .../i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb | 3 +-- .../easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb | 6 ++---- .../impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb | 4 +--- easybuild/easyconfigs/i/intel/intel-2017b.eb | 3 +-- 6 files changed, 7 insertions(+), 13 deletions(-) diff --git a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb index 8bae3f29f2..718eae9dd7 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb @@ -4,7 +4,7 @@ name = 'icc' version = '2017.4.196' homepage = 'http://software.intel.com/en-us/intel-compilers/' -description = "C and C++ compiler from Intel" +description = "Intel C and C++ compilers" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb index 35f4cd4d02..a34c1351e0 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -6,8 +6,7 @@ version = '2017.4.196' versionsuffix = '-GCC-6.4.0-2.28' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and - Intel MKL""" +description = "Intel C, C++ & Fortran compilers" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb index d3692d8024..9fc6419c66 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -4,7 +4,7 @@ name = 'ifort' version = '2017.4.196' homepage = 'http://software.intel.com/en-us/intel-compilers/' -description = "Fortran compiler from Intel" +description = "Intel Fortran compiler" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb index 092481da75..9199c8b2b8 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iimpi-2017b.eb @@ -4,10 +4,8 @@ name = 'imkl' version = '2017.3.196' homepage = 'http://software.intel.com/en-us/intel-mkl/' -description = """Intel Math Kernel Library is a library of highly optimized, - extensively threaded math routines for science, engineering, and financial - applications that require maximum performance. Core math functions include - BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" +description = """Intel Math Kernel Library (MKL), a library of highly optimized, + extensively threaded math functions, including BLAS, (Sca)LAPACK, Fast Fourier Transforms (FFT), etc.""" toolchain = {'name': 'iimpi', 'version': '2017b'} diff --git a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb index 827bd87f06..bd671dc906 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -4,9 +4,7 @@ name = 'impi' version = '2017.3.196' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' -description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message - passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" +description = "Intel MPI Library, compatible with MPICH ABI" toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-6.4.0-2.28'} diff --git a/easybuild/easyconfigs/i/intel/intel-2017b.eb b/easybuild/easyconfigs/i/intel/intel-2017b.eb index 79c32a59cd..06ebd20c1f 100644 --- a/easybuild/easyconfigs/i/intel/intel-2017b.eb +++ b/easybuild/easyconfigs/i/intel/intel-2017b.eb @@ -4,8 +4,7 @@ name = 'intel' version = '2017b' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & - Intel MKL.""" +description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)." toolchain = {'name': 'dummy', 'version': 'dummy'} -- GitLab From ae78af31c6048b06e12acc2a141abefe636e80ff Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 29 Aug 2017 17:45:53 +0200 Subject: [PATCH 436/845] adding easyconfigs: NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb --- ...46-intel-2017a-2015-10-20-Python-2.7.13.eb | 85 +++++++++++++++++++ 1 file changed, 85 insertions(+) create mode 100644 easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb new file mode 100644 index 0000000000..d229dc70b0 --- /dev/null +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb @@ -0,0 +1,85 @@ +name = 'NWChem' +version = '6.6.revision27746' +verdate = '2015-10-20' +versionsuffix = '-%s-Python-%%(pyver)s' % verdate + +homepage = 'http://www.nwchem-sw.org' +description = """NWChem aims to provide its users with computational chemistry tools that are scalable both in + their ability to treat large scientific computational chemistry problems efficiently, and in their use of available + parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. + NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all + combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties + and relativity.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'i8': True} + +source_urls = ['http://www.nwchem-sw.org/download.php?f='] +sources = ['Nwchem-%%(version)s-src.%s.tar.bz2' % verdate] +patches = [ + 'NWChem_fix-date.patch', + 'NWChem-%(version)s-parallelbuild.patch', + # patches for NWChem 6.6 (27746 revision) available on Aug 29th 2017 + 'Tddft_mxvec20.patch.gz', + 'Tools_lib64.patch.gz', + 'Config_libs66.patch.gz', + 'Cosmo_meminit.patch.gz', + 'Sym_abelian.patch.gz', + 'Xccvs98.patch.gz', + 'Dplot_tolrho.patch.gz', + 'Driver_smalleig.patch.gz', + 'Ga_argv.patch.gz', + 'Raman_displ.patch.gz', + 'Ga_defs.patch.gz', + 'Zgesvd.patch.gz', + 'Cosmo_dftprint.patch.gz', + 'Txs_gcc6.patch.gz', + 'Gcc6_optfix.patch.gz', + 'Util_gnumakefile.patch.gz', + 'Util_getppn.patch.gz', + 'Gcc6_macs_optfix.patch.gz', + 'Notdir_fc.patch.gz', + 'Xatom_vdw.patch.gz', + 'Hfmke.patch.gz', + 'Cdfti2nw66.patch.gz', +] +checksums = [ + '7b9b324883500c412476420d3591c283c1a68068b2ab6ce185d869d82497f798', # Nwchem-6.6.revision27746-src.2015-10-20.tar.bz2 + '215ec54f6132f2c9306bd636456722a36f0f1d98a67a0c8cbd10c5d1eed68feb', # NWChem_fix-date.patch + '454f3dc53058b0b0d23c94522b88bc1107904a1d696ca536e2991db3447de7a5', # NWChem-6.6.revision27746-parallelbuild.patch + 'cdfa8a5ae7d6ee09999407573b171beb91e37e1558a3bfb2d651982a85f0bc8f', # Tddft_mxvec20.patch.gz + '76b8d3e1b77829b683234c8307fde55bc9249b87410914b605a76586c8f32dae', # Tools_lib64.patch.gz + 'aa17f03cbb22ad7d883e799e0fddad1b5957f5f30b09f14a1a2caeeb9663cc07', # Config_libs66.patch.gz + '569c5ee528f3922ee60ca831eb20ec6591633a36f80efa76cbbe41cabeb9b624', # Cosmo_meminit.patch.gz + 'aa693e645a98dbafbb990e26145d65b100d6075254933f36326cf00bac3c29e0', # Sym_abelian.patch.gz + '1c0b0f1293e3b9b05e9e51e7d5b99977ccf1edb4b072872c8316452f6cea6f13', # Xccvs98.patch.gz + '2ebb1a5575c44eef4139da91f0e1e60057b2eccdba7f57a8fb577e840c326cbb', # Dplot_tolrho.patch.gz + 'dd65bfbae6b472b94c8ee81d74f6c3ece37c8fc8766ff7a3551d8005d44815b8', # Driver_smalleig.patch.gz + '8a78cb2af14314b92be9d241b801e9b9fed5527b9cb47a083134c7becdfa7cf1', # Ga_argv.patch.gz + '6a16f0f589a5cbb8d316f68bd2e6a0d46cd47f1c699a4b256a3973130061f6c3', # Raman_displ.patch.gz + 'c6f1a48338d196e1db22bcfc6087e2b2e6eea50a34d3a2b2d3e90cccf43742a9', # Ga_defs.patch.gz + '4af592c047dc3e0bc4962376ae2c6ca868eb7a0b40a347ed9b88e887016ad9ed', # Zgesvd.patch.gz + 'd3b73431a68d6733eb7b669d471e18a83e03fa8e40c48e536fe8edecd99250ff', # Cosmo_dftprint.patch.gz + '139692215718cd7414896470c0cc8b7817a73ece1e4ca93bf752cf1081a195af', # Txs_gcc6.patch.gz + '15cff43ab0509e0b0e83c49890032a848d6b7116bd6c8e5678e6c933f2d051ab', # Gcc6_optfix.patch.gz + '5dd82b9bd55583152295c999a0e4d72dd9d5c6ab7aa91117c2aae57a95a14ba1', # Util_gnumakefile.patch.gz + '8be418e1f8750778a31056f1fdf2a693fa4a12ea86a531f1ddf6f3620421027e', # Util_getppn.patch.gz + 'fade16098a1f54983040cdeb807e4e310425d7f66358807554e08392685a7164', # Gcc6_macs_optfix.patch.gz + 'a6a233951eb254d8aff5b243ca648def21fa491807a66c442f59c437f040ee69', # Notdir_fc.patch.gz + '7f4851ed15ecd86845e93530430eae11ed5b94695db70b0cc465c2aadcfabc1b', # Xatom_vdw.patch.gz + '3b33600d6a50155aff25926ecf778dbae046ecc20c9b61fbf554bb7f364f4518', # Hfmke.patch.gz + 'aea45f439a80d374ae84988d8cf95b78b7bb1047e3665265ee8fc55c0c5b176b', # Cdfti2nw66.patch.gz +] + +dependencies = [('Python', '2.7.13')] + +# This easyconfig is using the default for armci_network (OPENIB) and +# thus needs infiniband libraries. +osdependencies = [ + ('libibverbs-dev', 'libibverbs-devel'), + ('libibumad-dev', 'libibumad-devel'), +] + +modules = 'all python' + +moduleclass = 'chem' -- GitLab From 2283c3481033ab14f37ec7f77878bb515f21ed88 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 29 Aug 2017 20:19:14 +0200 Subject: [PATCH 437/845] indicate inclusion of patches in versionsuffix for NWChem 6.6 with intel/2017a --- ...ntel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb} | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/n/NWChem/{NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb => NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb} (93%) diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb similarity index 93% rename from easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb rename to easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb index d229dc70b0..5e0724e042 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb @@ -1,7 +1,7 @@ name = 'NWChem' version = '6.6.revision27746' verdate = '2015-10-20' -versionsuffix = '-%s-Python-%%(pyver)s' % verdate +versionsuffix = '-%s-patches-20170814-Python-%%(pyver)s' % verdate homepage = 'http://www.nwchem-sw.org' description = """NWChem aims to provide its users with computational chemistry tools that are scalable both in @@ -19,7 +19,9 @@ sources = ['Nwchem-%%(version)s-src.%s.tar.bz2' % verdate] patches = [ 'NWChem_fix-date.patch', 'NWChem-%(version)s-parallelbuild.patch', - # patches for NWChem 6.6 (27746 revision) available on Aug 29th 2017 + # available patches for NWChem 6.6 (27746 revision), + # cfr. http://www.nwchem-sw.org/index.php/Download#Patches_for_the_27746_revision_of_NWChem_6.6 + # most recent: Cdfti2nw66.patch.gz (Aug 14th 2017) 'Tddft_mxvec20.patch.gz', 'Tools_lib64.patch.gz', 'Config_libs66.patch.gz', -- GitLab From 04195f093ebda49e12387879d3999755688f23ea Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 29 Aug 2017 20:19:56 +0200 Subject: [PATCH 438/845] fix long line in NWChem easyconfig --- ...46-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb index 5e0724e042..2387d265fb 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb @@ -46,7 +46,8 @@ patches = [ 'Cdfti2nw66.patch.gz', ] checksums = [ - '7b9b324883500c412476420d3591c283c1a68068b2ab6ce185d869d82497f798', # Nwchem-6.6.revision27746-src.2015-10-20.tar.bz2 + # Nwchem-6.6.revision27746-src.2015-10-20.tar.bz2 + '7b9b324883500c412476420d3591c283c1a68068b2ab6ce185d869d82497f798', '215ec54f6132f2c9306bd636456722a36f0f1d98a67a0c8cbd10c5d1eed68feb', # NWChem_fix-date.patch '454f3dc53058b0b0d23c94522b88bc1107904a1d696ca536e2991db3447de7a5', # NWChem-6.6.revision27746-parallelbuild.patch 'cdfa8a5ae7d6ee09999407573b171beb91e37e1558a3bfb2d651982a85f0bc8f', # Tddft_mxvec20.patch.gz -- GitLab From 262f0837b10ad0ca304f4fcd4e9d2fb60c661f57 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 30 Aug 2017 09:34:15 +0200 Subject: [PATCH 439/845] Address comments --- easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb index 6f86928521..de7f258d00 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -24,9 +24,9 @@ configopts = [ # need to take care of $CFLAGS ourselves with dummy toolchain # we need to add -fPIC, but should also include -O* option to avoid compiling with -O0 (default for GCC) -buildopts = ['CFLAGS="-O2 -fPIC"', 'CFLAGS="-O2 -fPIC"'] +buildopts = 'CFLAGS="-O2 -fPIC"' -# Symlink to ncurses for libtinfo (since it can handle the API) so it doesn't get picked up from the OS +# Symlink libtinfo to libncurses (since it can handle the API) so it doesn't get picked up from the OS postinstallcmds = [ "ln -s %(installdir)s/lib/libncurses.so %(installdir)s/lib/libtinfo.so", "ln -s %(installdir)s/lib/libncurses.a %(installdir)s/lib/libtinfo.a" -- GitLab From 88af660a5875ac371cb234e3e4c307cd42d748ee Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 30 Aug 2017 09:54:04 +0200 Subject: [PATCH 440/845] include Autotools as build dep for netCDF --- easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2016a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015b.eb | 1 + .../easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016.02-GCC-4.9.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-foss-2016a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-intel-2016a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.07.eb | 1 + .../n/netCDF/netCDF-4.4.0-iomkl-2016.09-GCC-4.9.3-2.25.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016b.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016a.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016b.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2016b.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2016b.eb | 1 + .../n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb | 1 + .../n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb | 1 + easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a.eb | 1 + 20 files changed, 20 insertions(+) diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb index 67ec8a7992..cb332e5b48 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb index d5f3ba2170..86c8418dd5 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.10'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2016a.eb index 921f90805c..3a0cebe701 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2016a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2016a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015a.eb index ee5055dfe4..85cc8383ce 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.2.2'), ('Doxygen', '1.8.9.1', '', ('GCC', '4.9.2')), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015b.eb index 3722efdeb2..90402a2b11 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2015b.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.10'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016.02-GCC-4.9.eb index cff46757ad..bc9bd0ed7a 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016.02-GCC-4.9.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.10'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb index 40796ae26b..960e78bc12 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-foss-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-foss-2016a.eb index 39406d6275..3ecf42980e 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-foss-2016a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.3'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-intel-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-intel-2016a.eb index 719c330b9d..3e1a5c0408 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-intel-2016a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-intel-2016a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.3'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.07.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.07.eb index a0a822a673..be8771fd7d 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.07.eb @@ -20,6 +20,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.09-GCC-4.9.3-2.25.eb index eec48bea4a..253b8cea83 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.0-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -18,6 +18,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.4.1'), ('Doxygen', '1.8.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016a.eb index 8e1936bec6..45da7a6542 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.5.2'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016b.eb index f688f2156e..9a8b44243a 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-foss-2016b.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.5.2'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016a.eb index e66c2bd0e4..43f0af3fe2 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.5.2'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016b.eb index 9835133043..d526314012 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1-intel-2016b.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.5.2'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2016b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2016b.eb index 5da2b108a0..77eec6d4cf 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2016b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2016b.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.5.2'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2016b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2016b.eb index 24dee36e77..1ae7e5f216 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2016b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2016b.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.5.2'), ('Doxygen', '1.8.11'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb index 713953985c..02029aff9f 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb @@ -22,6 +22,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.8.2'), ('Doxygen', '1.8.13'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb index 8bc6d56640..7a31742b3a 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb @@ -23,6 +23,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.7.2'), ('Doxygen', '1.8.13'), ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a.eb index d30a65ec63..da116afc70 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a.eb @@ -21,6 +21,7 @@ dependencies = [ ] builddependencies = [ + ('Autotools', '20150215'), ('CMake', '3.7.2'), ('Doxygen', '1.8.13'), ] -- GitLab From c3a074f711cbc8980fd79876a7d9c918cc54afce Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Wed, 30 Aug 2017 11:35:39 +0200 Subject: [PATCH 441/845] adding easyconfigs: PnetCDF-1.8.1-intel-2017a.eb, ParallelIO-2.2.2a-intel-2017a.eb --- .../ParallelIO-2.2.2a-intel-2017a.eb | 39 +++++++++++++++++++ .../p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb | 23 +++++++++++ 2 files changed, 62 insertions(+) create mode 100644 easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb create mode 100644 easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb new file mode 100644 index 0000000000..78c03677c6 --- /dev/null +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -0,0 +1,39 @@ +easyblock = 'CMakeMake' + +name = 'ParallelIO' +version = '2.2.2a' + +homepage = 'https://github.com/NCAR/ParallelIO' +description = """A high-level Parallel I/O Library for structured grid applications""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +## underscore = "${version//./_}" something like this ?? +## sources = ['pio%(underscore)s.tar.gz'] bash sub in easyconf ?? +sources = ['pio2_2_2a.tar.gz'] +source_urls = ['https://github.com/NCAR/ParallelIO/archive/'] + +separate_build_dir = True + +dependencies = [ + ('PnetCDF', '1.8.1', '', ('intel', '2017a')), + ('netCDF-Fortran', '4.4.4', '', ('intel', '2017a')) +] + +builddependencies = [ + ('CMake', '3.8.2', '', ('intel', '2017a')), +] + +configopts = "-DPIO_ENABLE_TIMING=OFF " + +sanity_check_paths = { + 'files': [], + 'dirs': [('include','lib')] +} + +modextravars = { + 'PIO': '%(installdir)s', +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb new file mode 100644 index 0000000000..77ad478ab0 --- /dev/null +++ b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'PnetCDF' +version = '1.8.1' + +homepage = 'https://trac.mcs.anl.gov/projects/parallel-netcdf' +description = """Parallel netCDF: A Parallel I/O Library for NetCDF File Access""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['parallel-netcdf-%(version)s.tar.gz'] +source_urls = ['http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/'] + +sanity_check_paths = { + 'files': ['bin/pnetcdf_version'], + 'dirs': [] +} + +modextravars = { + 'PNETCDF': '%(installdir)s', +} + +moduleclass = 'data' -- GitLab From c9a331b5d5de4d0a3b6b950e3059302215388379 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 30 Aug 2017 12:22:54 +0200 Subject: [PATCH 442/845] bump version for expat, fontconfig and libpng easyconfigs that use GCCcore/6.4.0 --- easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb | 2 +- ...-2.2.1-GCCcore-6.4.0.eb => expat-2.2.4-GCCcore-6.4.0.eb} | 4 ++-- ...-GCCcore-6.4.0.eb => fontconfig-2.12.4-GCCcore-6.4.0.eb} | 6 +++--- .../easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb | 2 +- easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb | 4 ++-- ...6.30-GCCcore-6.4.0.eb => libpng-1.6.32-GCCcore-6.4.0.eb} | 3 ++- 6 files changed, 11 insertions(+), 10 deletions(-) rename easybuild/easyconfigs/e/expat/{expat-2.2.1-GCCcore-6.4.0.eb => expat-2.2.4-GCCcore-6.4.0.eb} (84%) rename easybuild/easyconfigs/f/fontconfig/{fontconfig-2.12.1-GCCcore-6.4.0.eb => fontconfig-2.12.4-GCCcore-6.4.0.eb} (82%) rename easybuild/easyconfigs/l/libpng/{libpng-1.6.30-GCCcore-6.4.0.eb => libpng-1.6.32-GCCcore-6.4.0.eb} (88%) diff --git a/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb index 99bd5ca7ab..b514618917 100644 --- a/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb @@ -25,7 +25,7 @@ builddependencies = [ ] dependencies = [ - ('expat', '2.2.1'), + ('expat', '2.2.4'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/expat/expat-2.2.4-GCCcore-6.4.0.eb similarity index 84% rename from easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/e/expat/expat-2.2.4-GCCcore-6.4.0.eb index 87f8150c28..0b3c3b3cc3 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.2.4-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'expat' -version = '2.2.1' +version = '2.2.4' homepage = 'http://expat.sourceforge.net/' @@ -16,7 +16,7 @@ toolchainopts = {'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_BZ2] -checksums = ['1868cadae4c82a018e361e2b2091de103cd820aaacb0d6cfa49bd2cd83978885'] +checksums = ['03ad85db965f8ab2d27328abcf0bc5571af6ec0a414874b2066ee3fdd372019e'] builddependencies = [ ('binutils', '2.28'), diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb similarity index 82% rename from easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb index 985994992e..74e751cff6 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'fontconfig' -version = '2.12.1' +version = '2.12.4' homepage = 'http://www.freedesktop.org/software/fontconfig' @@ -15,14 +15,14 @@ toolchainopts = {'pic': True} source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] sources = [SOURCE_TAR_GZ] -checksums = ['a9f42d03949f948a3a4f762287dbc16e53a927c91a07ee64207ebd90a9e5e292'] +checksums = ['fd5a6a663f4c4a00e196523902626654dd0c4a78686cbc6e472f338e50fdf806'] builddependencies = [ ('binutils', '2.28'), ] dependencies = [ - ('expat', '2.2.1'), + ('expat', '2.2.4'), ('freetype', '2.8'), ] diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb index 683ea59e3d..69e87c2fdd 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb @@ -24,7 +24,7 @@ builddependencies = [ dependencies = [ ('bzip2', '1.0.6'), - ('libpng', '1.6.30'), + ('libpng', '1.6.32'), ('zlib', '1.2.11'), ] diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb index 463baf18d2..fb6d920952 100644 --- a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb @@ -19,9 +19,9 @@ builddependencies = [ ] dependencies = [ - ('fontconfig', '2.12.1'), + ('fontconfig', '2.12.4'), ('libjpeg-turbo', '1.5.2'), - ('libpng', '1.6.30'), + ('libpng', '1.6.32'), ('zlib', '1.2.11'), ] diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.32-GCCcore-6.4.0.eb similarity index 88% rename from easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/l/libpng/libpng-1.6.32-GCCcore-6.4.0.eb index 6dc219faec..88d9dd7aec 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.32-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libpng' -version = '1.6.30' +version = '1.6.32' homepage = 'http://www.libpng.org/pub/png/libpng.html' @@ -12,6 +12,7 @@ toolchainopts = {'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['1a8ae5c8eafad895cc3fce78fbcb6fdef663b8eb8375f04616e6496360093abb'] builddependencies = [ ('binutils', '2.28'), -- GitLab From abcc333217866da07e932589eed57c79200de49e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 30 Aug 2017 13:20:41 +0200 Subject: [PATCH 443/845] stick to CMake 3.9.1 with GCCcore 6.4.0 toolchain --- .../b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb | 2 +- .../c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb | 41 ------------------- .../f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb | 2 +- .../j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb | 2 +- .../q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb | 2 +- 5 files changed, 4 insertions(+), 45 deletions(-) delete mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb index ca8add747d..e03707ac2e 100644 --- a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb @@ -15,7 +15,7 @@ checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8'] builddependencies = [ ('binutils', '2.28'), - ('CMake', '3.8.2'), + ('CMake', '3.9.1'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb deleted file mode 100644 index 80d38b2735..0000000000 --- a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.8.2' - -homepage = 'http://www.cmake.org' - -description = """ - CMake, the cross-platform, open-source build system. CMake is a family of - tools designed to build, test and package software. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] -checksums = ['da3072794eb4c09f2d782fcee043847b99bb4cf8d4573978d9b2024214d6e92d'] - -configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - # ('OpenSSL', '1.1.0c'), -] - -osdependencies = [ - ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), -] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb index f0015556cc..fffed92426 100644 --- a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb @@ -19,7 +19,7 @@ checksums = ['b39a4814a0f53f5e09a9192c41e3e51bd658843f770399023a963eb064f6409d'] builddependencies = [ ('binutils', '2.28'), - ('CMake', '3.8.2'), + ('CMake', '3.9.1'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb index b2d812f323..3714a84e8e 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb @@ -20,7 +20,7 @@ checksums = ['5b24faf5ed38670d6286e45ab7516b26458d05e7929b435afe569176765f4dda'] builddependencies = [ ('binutils', '2.28'), - ('CMake', '3.8.2'), + ('CMake', '3.9.1'), ] separate_build_dir = True diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb index 9734e3543a..c077c6a6ba 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb @@ -27,7 +27,7 @@ patches = [ builddependencies = [ ('binutils', '2.28'), - ('CMake', '3.8.2'), + ('CMake', '3.9.1'), ] sanity_check_paths = { -- GitLab From ebdc24e6f2754b06f9f37b9f1e5eeda2faf2c5e9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 30 Aug 2017 13:32:14 +0200 Subject: [PATCH 444/845] bump version for cURL, libsodium and FreeXL easyconfigs that use GCCcore/6.4.0, remove non-dummy Eigen easyconfig (headers only) --- ...re-6.4.0.eb => cURL-7.55.1-GCCcore-6.4.0.eb} | 15 ++++++++------- .../e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb | 17 ----------------- ...e-6.4.0.eb => FreeXL-1.0.3-GCCcore-6.4.0.eb} | 4 ++-- ...4.0.eb => libsodium-1.0.13-GCCcore-6.4.0.eb} | 4 ++-- .../Xerces-C++-3.1.4-GCCcore-6.4.0.eb | 2 +- 5 files changed, 13 insertions(+), 29 deletions(-) rename easybuild/easyconfigs/c/cURL/{cURL-7.54.1-GCCcore-6.4.0.eb => cURL-7.55.1-GCCcore-6.4.0.eb} (91%) delete mode 100644 easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb rename easybuild/easyconfigs/f/FreeXL/{FreeXL-1.0.2-GCCcore-6.4.0.eb => FreeXL-1.0.3-GCCcore-6.4.0.eb} (85%) rename easybuild/easyconfigs/l/libsodium/{libsodium-1.0.12-GCCcore-6.4.0.eb => libsodium-1.0.13-GCCcore-6.4.0.eb} (86%) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.55.1-GCCcore-6.4.0.eb similarity index 91% rename from easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/c/cURL/cURL-7.55.1-GCCcore-6.4.0.eb index 852ba24f5c..8c4d2ecaf0 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.55.1-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'cURL' -version = '7.54.1' +version = '7.55.1' homepage = 'http://curl.haxx.se' @@ -19,20 +19,21 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = ['http://curl.haxx.se/download/'] sources = [SOURCELOWER_TAR_GZ] - -osdependencies = [ - ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), -] +checksums = ['09576ea5e66672648d83dce3af16d0cb294d4cba2b5d166ade39655c495f4a20'] builddependencies = [ ('binutils', '2.28'), ] dependencies = [ + ('zlib', '1.2.11'), # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons - # ('OpenSSL', '1.1.0e') - ('zlib', '1.2.11'), + # ('OpenSSL', '1.1.0f') +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), ] configopts = '--with-zlib' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb deleted file mode 100644 index 50d8127475..0000000000 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb +++ /dev/null @@ -1,17 +0,0 @@ -name = 'Eigen' -version = '3.3.4' - -homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' - -description = """ - Eigen is a C++ template library for linear algebra: - matrices, vectors, numerical solvers, and related algorithms. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] -sources = ['%(version)s.tar.bz2'] -checksums = ['dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6'] - -moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.3-GCCcore-6.4.0.eb similarity index 85% rename from easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.3-GCCcore-6.4.0.eb index fffed92426..5f74ada210 100644 --- a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.3-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'FreeXL' -version = '1.0.2' +version = '1.0.3' homepage = 'https://www.gaia-gis.it/fossil/freexl/index' @@ -15,7 +15,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] sources = [SOURCELOWER_TAR_GZ] -checksums = ['b39a4814a0f53f5e09a9192c41e3e51bd658843f770399023a963eb064f6409d'] +checksums = ['f8ed29e03a6155454e538fce621e53991a270fcee31120ded339cff2523650a8'] builddependencies = [ ('binutils', '2.28'), diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-GCCcore-6.4.0.eb similarity index 86% rename from easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-GCCcore-6.4.0.eb index 927f15bb68..247097915a 100644 --- a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.13-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libsodium' -version = '1.0.12' +version = '1.0.13' homepage = 'http://doc.libsodium.org/' @@ -15,7 +15,7 @@ toolchainopts = {'pic': True} source_urls = ['https://download.libsodium.org/libsodium/releases/'] sources = [SOURCE_TAR_GZ] -checksums = ['b8648f1bb3a54b0251cf4ffa4f0d76ded13977d4fa7517d988f4c902dd8e2f95'] +checksums = ['9c13accb1a9e59ab3affde0e60ef9a2149ed4d6e8f99c93c7a5b97499ee323fd'] builddependencies = [ ('binutils', '2.28'), diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb index 3832c17c46..1d9545e9d9 100644 --- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb @@ -24,7 +24,7 @@ builddependencies = [ ] dependencies = [ - ('cURL', '7.54.1'), + ('cURL', '7.55.1'), ] sanity_check_paths = { -- GitLab From 12de95ddb5d6c14762d9dcdba1d037327b263d87 Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Wed, 30 Aug 2017 14:57:55 +0200 Subject: [PATCH 445/845] CMake GCCcore as ParallelIO dep and add checksums for this config and PnetCDF --- .../p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 7 ++++--- .../easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb | 1 + 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index 78c03677c6..60f276c3f1 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -9,10 +9,11 @@ description = """A high-level Parallel I/O Library for structured grid applicati toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'usempi': True} -## underscore = "${version//./_}" something like this ?? -## sources = ['pio%(underscore)s.tar.gz'] bash sub in easyconf ?? +# underscore = "${version//./_}" bash substition like this +# sources = ['pio%(underscore)s.tar.gz'] in an easyconfig file ? sources = ['pio2_2_2a.tar.gz'] source_urls = ['https://github.com/NCAR/ParallelIO/archive/'] +checksums = ['052a03e8e3b5ac244dc53b397a9920af3066efffa216ea7f8e5e4ac73a8b8033'] separate_build_dir = True @@ -22,7 +23,7 @@ dependencies = [ ] builddependencies = [ - ('CMake', '3.8.2', '', ('intel', '2017a')), + ('CMake', '3.8.2', '', ('GCCcore', '6.3.0')), ] configopts = "-DPIO_ENABLE_TIMING=OFF " diff --git a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb index 77ad478ab0..170ae98a1f 100644 --- a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} sources = ['parallel-netcdf-%(version)s.tar.gz'] source_urls = ['http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/'] +checksums = ['8d7d4c9c7b39bb1cbbcf087e0d726551c50f0cc30d44aed3df63daf3772c9043'] sanity_check_paths = { 'files': ['bin/pnetcdf_version'], -- GitLab From 2f848cea61598ee8ff1693a2bc3d1d9be9520ea6 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 30 Aug 2017 16:50:23 +0200 Subject: [PATCH 446/845] Linking to ncurses was not done correctly... Use `buildopts` instead, see http://www.linuxfromscratch.org/lfs/view/8.0/chapter06/readline.html --- .../easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb index 66d703c987..8a2b1e4f5f 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb @@ -19,7 +19,7 @@ builddependencies = [('binutils', '2.27')] dependencies = [('ncurses', '6.0')] # for the termcap symbols, use EB ncurses -preconfigopts = "env LDFLAGS='-lncurses'" +buildopts += "SHLIB_LIBS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + -- GitLab From e91377c50aa92f4e112c533dfc3550e8830a50cd Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 30 Aug 2017 17:43:16 +0200 Subject: [PATCH 447/845] Remove stray + --- .../easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb index 8a2b1e4f5f..b77f11d21b 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.3.0.eb @@ -19,7 +19,7 @@ builddependencies = [('binutils', '2.27')] dependencies = [('ncurses', '6.0')] # for the termcap symbols, use EB ncurses -buildopts += "SHLIB_LIBS='-lncurses'" +buildopts = "SHLIB_LIBS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + -- GitLab From d92fd4cc6a4a8e5d0bcd4259527cb66e1bd6d80b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 30 Aug 2017 21:03:36 +0200 Subject: [PATCH 448/845] remove bare Python easyconfig using GCCcore/6.4.0 toolchain + easyconfigs that require it --- ...n-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb | 35 ------------ ...L-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb | 38 ------------- .../Python-2.7.13-GCCcore-6.4.0-bare.eb | 56 ------------------- ...36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb | 33 ----------- ...1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb | 31 ---------- 5 files changed, 193 deletions(-) delete mode 100644 easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb delete mode 100644 easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb delete mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb delete mode 100644 easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb delete mode 100644 easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb deleted file mode 100644 index 9875d3b964..0000000000 --- a/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'Cython' -version = '0.26' -pyver = '2.7.13' -pyshortver = '2.7' -pysubver = '-bare' -versionsuffix = '-Python-%s%s' % (pyver, pysubver) - -homepage = 'https://pypi.python.org/pypi/Cython/' - -description = """ - The Cython language makes writing C extensions for the Python language as easy - as Python itself. Cython is a source code translator based on the well-known - Pyrex, but supports more cutting edge functionality and optimizations. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] -checksums = ['4c24e2c22ddaed624d35229dc5db25049e9e225c6f64f3364326836cad8f2c66'] - -builddependencies = [ - ('binutils', '2.28'), - ('Python', pyver, pysubver), -] - -sanity_check_paths = { - 'files': ['bin/cygdb', 'bin/%(namelower)s', - 'lib/python%s/site-packages/%%(namelower)s.py' % pyshortver], - 'dirs': ['lib/python%s/site-packages/%%(name)s' % pyshortver], -} - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb deleted file mode 100644 index eb4c534d26..0000000000 --- a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PyYAML' -version = '3.12' -pyver = '2.7.13' -pyshortver = '2.7' -pysubver = '-bare' -versionsuffix = '-Python-%s%s' % (pyver, pysubver) - -homepage = 'https://pypi.python.org/pypi/PyYAML/' - -description = """ - PyYAML is a YAML parser and emitter for the Python programming language. -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] -checksums = ['592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab'] - -builddependencies = [ - ('binutils', '2.28'), - ('Python', pyver, pysubver), -] - -dependencies = [ - ('libyaml', '0.1.6'), -] - -options = {'modulename': 'yaml'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages' % pyshortver], -} - -moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb deleted file mode 100644 index 0860032fc3..0000000000 --- a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb +++ /dev/null @@ -1,56 +0,0 @@ -name = 'Python' -version = '2.7.13' -versionsuffix = '-bare' - -homepage = 'http://python.org/' - -description = """ - Python is a programming language that lets you work more quickly and - integrate your systems more effectively. - -Note: This module is meant to provide a builddependency for other Python - modules while using EasyBuild's --minimaltoolchain option. Modules - built with it will require the full Python later -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] -checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] - -builddependencies = [ - ('binutils', '2.28'), -] - -dependencies = [ - ('bzip2', '1.0.6'), - ('libreadline', '7.0'), - ('ncurses', '6.0'), - ('SQLite', '3.19.3'), - ('zlib', '1.2.11'), -] - -osdependencies = [ - # rely upon distribution for timely security updates - ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), -] - -# We hide this by default since users should not use it in production, -# high-performance Python should be delivered at compiler level with -# a default extension set -# hidden = True - -# bare installation: only known module deps for GCCcore tools included -exts_list = [] - -# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... -# add RPATH so this can be used as a builddependency for "bare" PythonPackages -preconfigopts = """ - sed -e\ - 's:$(LINKCC) $(LDFLAGS) $(LINKFORSHARED):$(LINKCC) $(LDFLAGS) $(LINKFORSHARED) -Wl,-rpath=%(installdir)s/lib:'\ - -i.eb Makefile.pre.in -""" - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb deleted file mode 100644 index 9b5a4054e1..0000000000 --- a/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'setuptools' -version = '36.2.0' -pyver = '2.7.13' -pyshortver = '2.7' -pysubver = '-bare' -versionsuffix = '-Python-%s%s' % (pyver, pysubver) - -homepage = 'http://pypi.python.org/pypi/setuptools/' - -description = """ - Download, build, install, upgrade, and uninstall Python packages -- easily! -""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_ZIP] -checksums = ['4c2bda3829c9dbbe9c2b33d89c4b1cb6d45813615ab8e248ad352e3697a96d81'] - -builddependencies = [ - ('Python', pyver, pysubver), -] - -pylibdir = "lib/python%s/site-packages/%s" % (pyshortver, name) -sanity_check_paths = { - 'files': ["bin/easy_install", "%s-%s-py%s.egg" % - (pylibdir, version, pyshortver)], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb deleted file mode 100644 index f5345426c3..0000000000 --- a/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb +++ /dev/null @@ -1,31 +0,0 @@ -# Author:: Jack Perdue - TAMU HPRC - http://sc.tamu.edu - -easyblock = 'PythonPackage' - -name = 'six' -version = '1.10.0' -pyver = '2.7.13' -pyshortver = '2.7' -pysubver = '-bare' -versionsuffix = '-Python-%s%s' % (pyver, pysubver) - -homepage = 'https://pypi.python.org/pypi/six/1.10.0' - -description = "Python 2 and 3 compatibility utilities" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -sources = [SOURCE_TAR_GZ] -source_urls = [PYPI_LOWER_SOURCE] -checksums = ['105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a'] - -builddependencies = [ - ('Python', pyver, pysubver), -] - -sanity_check_paths = { - 'files': ['lib/python%s/site-packages/%%(name)s.py' % pyshortver], - 'dirs': [], -} - -moduleclass = 'devel' -- GitLab From a0c8ece7bb26403b943259027ed7143fd90b6deb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 30 Aug 2017 21:28:53 +0200 Subject: [PATCH 449/845] bump version for libyaml, SQLite & Tcl easyconfigs that use GCCcore/6.4.0 --- ....1.6-GCCcore-6.4.0.eb => libyaml-0.1.7-GCCcore-6.4.0.eb} | 4 ++-- ...19.3-GCCcore-6.4.0.eb => SQLite-3.20.1-GCCcore-6.4.0.eb} | 6 +++--- ...cl-8.6.6-GCCcore-6.4.0.eb => Tcl-8.6.7-GCCcore-6.4.0.eb} | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-) rename easybuild/easyconfigs/l/libyaml/{libyaml-0.1.6-GCCcore-6.4.0.eb => libyaml-0.1.7-GCCcore-6.4.0.eb} (88%) rename easybuild/easyconfigs/s/SQLite/{SQLite-3.19.3-GCCcore-6.4.0.eb => SQLite-3.20.1-GCCcore-6.4.0.eb} (90%) rename easybuild/easyconfigs/t/Tcl/{Tcl-8.6.6-GCCcore-6.4.0.eb => Tcl-8.6.7-GCCcore-6.4.0.eb} (90%) diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7-GCCcore-6.4.0.eb similarity index 88% rename from easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/l/libyaml/libyaml-0.1.7-GCCcore-6.4.0.eb index 156fcf6ef5..975e8ba0b5 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7-GCCcore-6.4.0.eb @@ -10,7 +10,7 @@ easyblock = 'ConfigureMake' name = 'libyaml' -version = '0.1.6' +version = '0.1.7' homepage = 'http://pyyaml.org/wiki/LibYAML' @@ -20,7 +20,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = ['http://pyyaml.org/download/libyaml/'] sources = ['yaml-%(version)s.tar.gz'] -checksums = ['7da6971b4bd08a986dd2a61353bc422362bd0edcc67d7ebaac68c95f74182749'] +checksums = ['8088e457264a98ba451a90b8661fcb4f9d6f478f7265d48322a196cec2480729'] builddependencies = [ ('binutils', '2.28'), diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.20.1-GCCcore-6.4.0.eb similarity index 90% rename from easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/s/SQLite/SQLite-3.20.1-GCCcore-6.4.0.eb index e10115f361..7d34b6b0e7 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.20.1-GCCcore-6.4.0.eb @@ -13,7 +13,7 @@ easyblock = 'ConfigureMake' name = 'SQLite' -version = '3.19.3' +version = '3.20.1' homepage = 'http://www.sqlite.org/' @@ -26,7 +26,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.sqlite.org/2017/'] version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) for x in version.split('.')[1:]) sources = ['sqlite-autoconf-%s.tar.gz' % version_str] -checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] +checksums = ['ec66595b29bc0798b023a5122021ea646ab4fa9e2f735937c5426feeba950742'] builddependencies = [ ('binutils', '2.28'), @@ -34,7 +34,7 @@ builddependencies = [ dependencies = [ ('libreadline', '7.0'), - ('Tcl', '8.6.6'), + ('Tcl', '8.6.7'), ] parallel = 1 diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.7-GCCcore-6.4.0.eb similarity index 90% rename from easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb rename to easybuild/easyconfigs/t/Tcl/Tcl-8.6.7-GCCcore-6.4.0.eb index cffeed4270..08a9084d56 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.7-GCCcore-6.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'Tcl' -version = '8.6.6' +version = '8.6.7' homepage = 'http://www.tcl.tk/' @@ -15,7 +15,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] -checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] +checksums = ['7c6b8f84e37332423cfe5bae503440d88450da8cc1243496249faa5268026ba5'] builddependencies = [ ('binutils', '2.28'), -- GitLab From 16ba2457acd12c7bf6aa43da2ea3931999615c8e Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Thu, 31 Aug 2017 09:58:53 +0200 Subject: [PATCH 450/845] ParallelIO-intel-2017a: source string _ substitution and rm tc from deps --- .../p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index 60f276c3f1..0fb02af4a6 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -9,17 +9,15 @@ description = """A high-level Parallel I/O Library for structured grid applicati toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'usempi': True} -# underscore = "${version//./_}" bash substition like this -# sources = ['pio%(underscore)s.tar.gz'] in an easyconfig file ? -sources = ['pio2_2_2a.tar.gz'] +sources = ['pio%s.tar.gz' % '_'.join(version.split('.'))] source_urls = ['https://github.com/NCAR/ParallelIO/archive/'] checksums = ['052a03e8e3b5ac244dc53b397a9920af3066efffa216ea7f8e5e4ac73a8b8033'] separate_build_dir = True dependencies = [ - ('PnetCDF', '1.8.1', '', ('intel', '2017a')), - ('netCDF-Fortran', '4.4.4', '', ('intel', '2017a')) + ('PnetCDF', '1.8.1'), + ('netCDF-Fortran', '4.4.4') ] builddependencies = [ -- GitLab From 45218e57029dcf9c5573ca7afe290a53b8a9ef43 Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Thu, 31 Aug 2017 11:24:06 +0200 Subject: [PATCH 451/845] ParallelIO and PnetCDF 4space indent and 1space after , --- .../p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 10 +++++----- .../easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb | 4 ++-- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index 0fb02af4a6..5cf34e7172 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -16,23 +16,23 @@ checksums = ['052a03e8e3b5ac244dc53b397a9920af3066efffa216ea7f8e5e4ac73a8b8033'] separate_build_dir = True dependencies = [ - ('PnetCDF', '1.8.1'), - ('netCDF-Fortran', '4.4.4') + ('PnetCDF', '1.8.1'), + ('netCDF-Fortran', '4.4.4') ] builddependencies = [ - ('CMake', '3.8.2', '', ('GCCcore', '6.3.0')), + ('CMake', '3.8.2', '', ('GCCcore', '6.3.0')) ] configopts = "-DPIO_ENABLE_TIMING=OFF " sanity_check_paths = { - 'files': [], + 'files': [], 'dirs': [('include','lib')] } modextravars = { - 'PIO': '%(installdir)s', + 'PIO': '%(installdir)s' } moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb index 170ae98a1f..605ea27a21 100644 --- a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb @@ -13,12 +13,12 @@ source_urls = ['http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/'] checksums = ['8d7d4c9c7b39bb1cbbcf087e0d726551c50f0cc30d44aed3df63daf3772c9043'] sanity_check_paths = { - 'files': ['bin/pnetcdf_version'], + 'files': ['bin/pnetcdf_version'], 'dirs': [] } modextravars = { - 'PNETCDF': '%(installdir)s', + 'PNETCDF': '%(installdir)s', } moduleclass = 'data' -- GitLab From 16fdb68b3ccbdead67e638f34d2c3f46b78ad340 Mon Sep 17 00:00:00 2001 From: iotaka Date: Thu, 31 Aug 2017 12:17:43 +0200 Subject: [PATCH 452/845] CGNS 3.3.1 --- .../c/CGNS/CGNS-3.3.1-foss-2016b.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb new file mode 100644 index 0000000000..ca48818de4 --- /dev/null +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -0,0 +1,24 @@ +name = 'CGNS' +version = '3.3.1' + +homepage = 'https://cgns.github.io/' +description = """The CGNS system is designed to facilitate the exchange of data between sites and applications, and to help stabilize the archiving of aerodynamic data.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/CGNS/CGNS/archive/v%(version)s.tar.gz'] +sources = [SOURCE_TAR_GZ] +checksums = ['65c55998270c3e125e28ec5c3742e15d'] + +easyblock = 'CMakeMake' + +dependencies = [ + ('HDF5', '1.10.0-patch1'), +] + +builddependencies = [ + ('CMake', '3.6.1'), +] + +moduleclass = 'cae' -- GitLab From 525856e7a399a5610fb3ad93e999a1fb9048ca8a Mon Sep 17 00:00:00 2001 From: iotaka Date: Thu, 31 Aug 2017 12:27:04 +0200 Subject: [PATCH 453/845] fix @pescobar suggestions --- easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb index ca48818de4..d48a53b4ed 100644 --- a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -1,8 +1,11 @@ +easyblock = 'CMakeMake' + name = 'CGNS' version = '3.3.1' homepage = 'https://cgns.github.io/' -description = """The CGNS system is designed to facilitate the exchange of data between sites and applications, and to help stabilize the archiving of aerodynamic data.""" +description = """The CGNS system is designed to facilitate the exchange of data between sites and applications, + and to help stabilize the archiving of aerodynamic data.""" toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} @@ -11,8 +14,6 @@ source_urls = ['https://github.com/CGNS/CGNS/archive/v%(version)s.tar.gz'] sources = [SOURCE_TAR_GZ] checksums = ['65c55998270c3e125e28ec5c3742e15d'] -easyblock = 'CMakeMake' - dependencies = [ ('HDF5', '1.10.0-patch1'), ] -- GitLab From caad843d538a7c838d25747ebee7a006c1d8b6b3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 13:39:06 +0200 Subject: [PATCH 454/845] fix linking to ncurses in libreadline 7.0 easyconfig using GCCcore/6.4.0 --- .../easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb index b26a32205d..6f3826b4d5 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb @@ -30,7 +30,7 @@ dependencies = [ ] # for the termcap symbols, use EB ncurses -preconfigopts = "env LDFLAGS='-lncurses'" +buildopts = "SHLIB_LIBS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + -- GitLab From c2f52fe768c9dcaaedc6c81b81050517beb8289f Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Thu, 31 Aug 2017 13:42:06 +0200 Subject: [PATCH 455/845] addressing travis style complaints --- .../p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 8 ++++---- .../easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index 5cf34e7172..e7c22a9446 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -17,18 +17,18 @@ separate_build_dir = True dependencies = [ ('PnetCDF', '1.8.1'), - ('netCDF-Fortran', '4.4.4') + ('netCDF-Fortran', '4.4.4'), ] builddependencies = [ - ('CMake', '3.8.2', '', ('GCCcore', '6.3.0')) + ('CMake', '3.8.2', '', ('GCCcore', '6.3.0')), ] configopts = "-DPIO_ENABLE_TIMING=OFF " sanity_check_paths = { - 'files': [], - 'dirs': [('include','lib')] + 'files': ['lib/piof.a'], + 'dirs': [('include','lib')], } modextravars = { diff --git a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb index 605ea27a21..6c3b0f7759 100644 --- a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb @@ -14,7 +14,7 @@ checksums = ['8d7d4c9c7b39bb1cbbcf087e0d726551c50f0cc30d44aed3df63daf3772c9043'] sanity_check_paths = { 'files': ['bin/pnetcdf_version'], - 'dirs': [] + 'dirs': [('include','lib','bin')], } modextravars = { -- GitLab From d82d768bfb7f5fb98630442a2a7118ccd3a9805c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 13:53:35 +0200 Subject: [PATCH 456/845] add peperr extension for R 3.4.0 --- easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 5ba7780140..bebb932536 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -554,6 +554,7 @@ exts_list = [ ('WriteXLS', '4.0.0', ext_options), ('mpath', '0.2-4', ext_options), ('timereg', '1.9.1', ext_options), + ('peperr' , '1.1-7', ext_options), ] moduleclass = 'lang' -- GitLab From d92eba74cb48ba32969f80867a8c6221feb9e7ed Mon Sep 17 00:00:00 2001 From: iotaka Date: Thu, 31 Aug 2017 14:41:05 +0200 Subject: [PATCH 457/845] Update CGNS-3.3.1-foss-2016b.eb changed source_urls and sources --- easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb index d48a53b4ed..6dc23c93a4 100644 --- a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -10,8 +10,8 @@ description = """The CGNS system is designed to facilitate the exchange of data toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = ['https://github.com/CGNS/CGNS/archive/v%(version)s.tar.gz'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/CGNS/CGNS/archive/'] +sources = ['v%(version)s.tar.gz'] checksums = ['65c55998270c3e125e28ec5c3742e15d'] dependencies = [ -- GitLab From ccb49d5ece60f7258a2d4577d543f76b86a281cb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 14:56:54 +0200 Subject: [PATCH 458/845] fix minor style issue --- easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index bebb932536..194e3eb272 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -554,7 +554,7 @@ exts_list = [ ('WriteXLS', '4.0.0', ext_options), ('mpath', '0.2-4', ext_options), ('timereg', '1.9.1', ext_options), - ('peperr' , '1.1-7', ext_options), + ('peperr', '1.1-7', ext_options), ] moduleclass = 'lang' -- GitLab From f31e9ac7d54c4fec58f0e2dad265f2d8b0cd719e Mon Sep 17 00:00:00 2001 From: iotaka Date: Thu, 31 Aug 2017 16:20:48 +0200 Subject: [PATCH 459/845] Update CGNS-3.3.1-foss-2016b.eb added @pescobar --- easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb index 6dc23c93a4..5e9f2fac97 100644 --- a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -23,3 +23,9 @@ builddependencies = [ ] moduleclass = 'cae' + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["cgnscheck", "cgnscompress", "cgnsconvert", "cgnsdiff", + "cgnslist, "cgnsnames", "cgnsupdate"], "lib/libcgns.so", "include/cgnslib.h" ], + 'dirs': [], +} -- GitLab From 0769bf707e8b4b7042e673cb92460fd68ad7ab9d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 18:21:53 +0200 Subject: [PATCH 460/845] adding easyconfigs: MATLAB-2013b.eb --- easybuild/easyconfigs/m/MATLAB/MATLAB-2013b.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/m/MATLAB/MATLAB-2013b.eb diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2013b.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2013b.eb new file mode 100644 index 0000000000..a43a1a8b75 --- /dev/null +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2013b.eb @@ -0,0 +1,15 @@ +name = 'MATLAB' +version = '2013b' + +homepage = 'http://www.mathworks.com/products/matlab' +description = """MATLAB is a high-level language and interactive environment + that enables you to perform computationally intensive tasks faster than with + traditional programming languages such as C, C++, and Fortran.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Java', '1.7.0_80')] + +moduleclass = 'math' -- GitLab From 0e5842de187544a47ca08f739c0bf013ce415ac5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 19:42:01 +0200 Subject: [PATCH 461/845] adding easyconfigs: ROOT-6.06.02-intel-2017a-Python-2.7.13.eb, CFITSIO-3.41-GCCcore-6.3.0.eb --- .../c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb | 24 ++++++++ .../ROOT-6.06.02-intel-2017a-Python-2.7.13.eb | 59 +++++++++++++++++++ 2 files changed, 83 insertions(+) create mode 100644 easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..b66d494bcc --- /dev/null +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'CFITSIO' +version = '3.41' + +homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' +description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in +FITS (Flexible Image Transport System) data format.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +srcversion = '%s0' % version.replace('.', '') +source_urls = ['http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/'] +sources = ['%%(namelower)s%s.tar.gz' % srcversion] + +builddependencies = [('binutils', '2.27')] + +sanity_check_paths = { + 'files': ['lib/libcfitsio.a'], + 'dirs': ['include'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..b1f9dab124 --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,59 @@ +name = 'ROOT' +version = '6.06.02' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://root.cern.ch/drupal/' +description = """The ROOT system provides a set of OO frameworks with all the functionality + needed to handle and analyze large amounts of data in a very efficient way.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s_v%(version)s.source.tar.gz'] +source_urls = ['ftp://root.cern.ch/root/'] +patches = [ + 'configure_FftwFromMkl_28.patch', + 'ROOT-v5_recent-ifort.patch', + 'ROOT-v5.34.26_libX.patch', +] + +dependencies = [ + ('GSL', '2.3'), + ('libxml2', '2.9.4'), + ('PCRE', '8.41'), + ('CFITSIO', '3.41'), + ('freetype', '2.7.1', '-libpng-1.6.29'), + ('Python', '2.7.13'), + ('zlib', '1.2.11'), + ('X11', '20170314'), + ('Mesa', '17.0.2'), + ('libGLU', '9.0.0'), + ('GL2PS', '1.4.0'), +] + +# use external ZLIB +preconfigopts = 'env ZLIB=$EBROOTZLIB ' + +# architecture +arch = 'linuxx8664icc' + +# disable features +configopts = ' --disable-xrootd --disable-mysql --disable-krb5 --disable-odbc ' +configopts += ' --disable-oracle --disable-pgsql --disable-qt --disable-sqlite' +# enable features +configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' +configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' +configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' +configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' +configopts += ' --with-cfitsio-incdir=$EBROOTCFITSIO/include --with-cfitsio-libdir=$EBROOTCFITSIO/lib' +configopts += ' --with-opengl-incdir=$EBROOTMESA/include --with-opengl-libdir=$EBROOTMESA/lib' +configopts += ' --with-x11-libdir=$EBROOTX11/lib --with-xext-libdir=$EBROOTLIBX11/lib' +configopts += ' --with-xft-libdir=$EBROOTX11/lib' +configopts += ' --with-xpm-incdir=$EBROOTX11/include --with-xpm-libdir=$EBROOTX11/lib' + +sanity_check_commands = ["python -c 'import ROOT'"] + +modextrapaths = {'PYTHONPATH': 'lib/'} + +moduleclass = 'data' -- GitLab From 72c0ababdb931d680214893c690afe85f849223b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 19:43:35 +0200 Subject: [PATCH 462/845] adding easyconfigs: XZ-5.2.3-GCCcore-6.4.0.eb, gettext-0.19.8.1-GCCcore-6.4.0.eb, libxml2-2.9.4-GCCcore-6.4.0.eb --- .../gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb | 26 ++++++++++++++++ .../l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb | 26 ++++++++++++++++ .../x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb | 31 +++++++++++++++++++ 3 files changed, 83 insertions(+) create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3c9be38c7f --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.8.1' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libxml2', '2.9.4'), + ('ncurses', '6.0'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.28')] + +configopts = '--without-emacs --with-libxml2-prefix=$EBROOTLIBXML2' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3672386817 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +name = 'libxml2' +version = '2.9.4' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.11'), + ('XZ', '5.2.3'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.28')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..276a5fb2d6 --- /dev/null +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'XZ' +version = '5.2.3' + +homepage = 'http://tukaani.org/xz/' +description = "xz: XZ utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://tukaani.org/xz/'] + +patches = ['XZ-5.2.2_compat-libs.patch'] + +builddependencies = [ + # use gettext built with dummy as build dep to avoid cyclic dependency (XZ -> gettext -> libxml2 -> XZ) + ('gettext', '0.19.8.1', '', True), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.28'), +] + +# may become useful in non-x86 archs +# configopts = ' --disable-assembler ' + +sanity_check_paths = { + 'files': ["bin/xz", "bin/lzmainfo"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 0fd6c42dce8717516d2e48984ee0797e13131cdd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 19:51:14 +0200 Subject: [PATCH 463/845] adding easyconfigs: PYTHIA-8.226-intel-2017a-Python-2.7.13.eb --- .../PYTHIA-8.226-intel-2017a-Python-2.7.13.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..945a05625b --- /dev/null +++ b/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'PYTHIA' +version = '8.226' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://home.thep.lu.se/~torbjorn/Pythia.html' +description = """PYTHIA is a standard tool for the generation of events in high-energy collisions, + comprising a coherent set of physics models for the evolution from a few-body hard + process to a complex multiparticle final state.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://home.thep.lu.se/~torbjorn/pythia8/'] +sources = ['pythia%(version_major)s%(version_minor)s.tgz'] +checksums = ['8ff4281bce9d22b17f1ec88e9e9353e8172512d5ef96296ace9486860e9ed2c9'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Python', '2.7.13'), + ('ROOT', '6.06.02', versionsuffix), +] + +configopts = '--cxx="$CXX" --cxx-common="$CXXFLAGS" ' +configopts += '--with-gzip --with-python --with-python-include=$EBROOTPYTHON/include/python*/ --with-root' + +sanity_check_paths = { + 'files': ['bin/pythia%(version_major)s-config', 'lib/libpythia%(version_major)s.a', + 'lib/libpythia%%(version_major)s.%s' % SHLIB_EXT, 'lib/pythia8.py', 'lib/_pythia8.%s' % SHLIB_EXT], + 'dirs': ['include/Pythia%(version_major)s', 'include/Pythia%(version_major)sPlugins', 'share'], +} +sanity_check_commands = ["python -c 'import pythia%(version_major)s'"] + +modextrapaths = {'PYTHONPATH': 'lib'} + +moduleclass = 'phys' -- GitLab From 0c03dc497dc7747fc01e44ac13692a45b3870b5c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 21:34:10 +0200 Subject: [PATCH 464/845] add check to see whether binutils is included as build dep when GCCore toolchain is used --- .../easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb | 2 ++ .../b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb | 2 ++ .../b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb | 2 ++ .../d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb | 1 + .../easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb | 1 + .../easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb | 2 ++ .../easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb | 2 +- test/easyconfigs/easyconfigs.py | 11 +++++++++++ 8 files changed, 22 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb index 726ee69664..3436d2092a 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb @@ -23,4 +23,6 @@ toolchainopts = {'pic': True} sources = ['v%(version)s.tar.gz'] source_urls = ['https://github.com/lh3/%(name)s/archive/'] +builddependencies = [('binutils', '2.26')] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb index f12c5655a0..75231c322f 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb @@ -15,4 +15,6 @@ toolchainopts = {'pic': True} sources = ['%(namelower)s-%(version)s-src.zip'] source_urls = ['http://download.sourceforge.net/bowtie-bio/'] +builddependencies = [('binutils', '2.26')] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb index ffaca077d2..feb579d4dc 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb @@ -16,4 +16,6 @@ sources = ['%(namelower)s-%(version)s-src.zip'] source_urls = ['http://download.sourceforge.net/bowtie-bio/'] checksums = ['b1e9ccc825207efd1893d9e33244c681bcb89b9b2b811eb95a9f5a92eab637ae'] +builddependencies = [('binutils', '2.27')] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb index f55dbe8583..7bf2a381a2 100644 --- a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb @@ -11,6 +11,7 @@ sources = ['%(namelower)s-%(version)s.src.tar.gz'] source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] builddependencies = [ + ('binutils', '2.26'), ('CMake', '3.7.1'), ('flex', '2.6.0'), ('Bison', '3.0.4'), diff --git a/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb index 1d8dbc1f53..4e022733f1 100644 --- a/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb @@ -19,6 +19,7 @@ sources = ['%(namelower)s_%(version)s.zip'] source_urls = ['https://downloads.sourceforge.net/project/gsoap%(version_major)s/gsoap-%(version_major_minor)s/'] builddependencies = [ + ('binutils', '2.27'), ('Bison', '3.0.4'), ('flex', '2.6.3'), ] diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb index fcd38e2364..c58749ad07 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb @@ -16,6 +16,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] checksums = ['1ff7aedb3d66a0d73f442f6261e4b3860df6fd6c94025c2cb31a202c9c60fe0e'] +builddependencies = [('binutils', '2.28')] + sanity_check_paths = { 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], 'dirs': [], diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb index 62d5ecc186..e6b26a5332 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb @@ -10,7 +10,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] sources = [SOURCELOWER_TAR_GZ] -dependencies = [('binutils', '2.25')] +builddependencies = [('binutils', '2.25')] exts_list = [ ('Config::General', '2.61', { diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 2dac08069f..7b45707a18 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -249,6 +249,17 @@ def template_easyconfig_test(self, spec): for old_url in old_urls: self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' not found in %s" % (old_url, spec)) + # make sure binutils is included as a build dep if toolchain is GCCcore + if ec['toolchain']['name'] == 'GCCcore': + # with 'Tarball' easyblock: only unpacking, no building; Eigen is also just a tarball + requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] + # if no sources/extensions/components are specified, it's just a bundle (nothing is being compiled) + requires_binutils &= bool(ec['sources'] or ec['exts_list'] or ec.get('components')) + + if requires_binutils: + dep_names = [d['name'] for d in ec['builddependencies']] + self.assertTrue('binutils' in dep_names, "binutils is a build dep in %s: %s" % (spec, dep_names)) + # make sure all patch files are available specdir = os.path.dirname(spec) specfn = os.path.basename(spec) -- GitLab From 4c4e7e1e5e7b28d4bd6224fc017d4db1744503b9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 21:44:27 +0200 Subject: [PATCH 465/845] bump version & fix source URL for ROOT, add checksums for ROOT & CFITSIO --- .../c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb | 1 + ...13.eb => ROOT-6.10.04-intel-2017a-Python-2.7.13.eb} | 10 ++++++++-- 2 files changed, 9 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/r/ROOT/{ROOT-6.06.02-intel-2017a-Python-2.7.13.eb => ROOT-6.10.04-intel-2017a-Python-2.7.13.eb} (81%) diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb index b66d494bcc..76eae3e43e 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.41-GCCcore-6.3.0.eb @@ -13,6 +13,7 @@ toolchainopts = {'pic': True} srcversion = '%s0' % version.replace('.', '') source_urls = ['http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/'] sources = ['%%(namelower)s%s.tar.gz' % srcversion] +checksums = ['a556ac7ea1965545dcb4d41cfef8e4915eeb8c0faa1b52f7ff70870f8bb5734c'] builddependencies = [('binutils', '2.27')] diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb similarity index 81% rename from easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb rename to easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb index b1f9dab124..6294637101 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-6.06.02-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb @@ -1,5 +1,5 @@ name = 'ROOT' -version = '6.06.02' +version = '6.10.04' versionsuffix = '-Python-%(pyver)s' homepage = 'http://root.cern.ch/drupal/' @@ -9,13 +9,19 @@ description = """The ROOT system provides a set of OO frameworks with all the fu toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True} +source_urls = ['https://root.cern.ch/download/'] sources = ['%(namelower)s_v%(version)s.source.tar.gz'] -source_urls = ['ftp://root.cern.ch/root/'] patches = [ 'configure_FftwFromMkl_28.patch', 'ROOT-v5_recent-ifort.patch', 'ROOT-v5.34.26_libX.patch', ] +checksums = [ + '461bde21d78608422310f04c599e84ce8dfbdd91caf12c2a54db6c01f8228f5b', # root_v6.10.04.source.tar.gz + '064eeb2a39dc8c96ba707f2a2bfd591c892f64e47e54df2d7d57f5f87a998a48', # configure_FftwFromMkl_28.patch + '54477336c6453e46ba18b465a61c181107943c47816b0744626ba147ad5df1c2', # ROOT-v5_recent-ifort.patch + 'f97179b55bf862d884aba037eef12eed00829fb13f303c464d974331801cc2df', # ROOT-v5.34.26_libX.patch +] dependencies = [ ('GSL', '2.3'), -- GitLab From 47e8084c8214aa3e0fcd9028b7833d499be43f0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 31 Aug 2017 21:46:38 +0200 Subject: [PATCH 466/845] add missing checksums --- .../g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb | 3 ++- .../easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb | 1 + easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb | 7 +++++-- 3 files changed, 8 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb index 3c9be38c7f..33c63f6e34 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.8.1-GCCcore-6.4.0.eb @@ -10,8 +10,9 @@ and documentation""" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['ff942af0e438ced4a8b0ea4b0b6e0d6d657157c5e2364de57baa279c1c125c43'] dependencies = [ ('libxml2', '2.9.4'), diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb index 3672386817..da9c497548 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-6.4.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xmlsoft.org/sources/old/' ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['ffb911191e509b966deb55de705387f14156e1a56b21824357cdf0053233633c'] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb index 276a5fb2d6..c02558f16a 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.3-GCCcore-6.4.0.eb @@ -8,10 +8,13 @@ description = "xz: XZ utilities" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} -sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://tukaani.org/xz/'] - +sources = [SOURCELOWER_TAR_BZ2] patches = ['XZ-5.2.2_compat-libs.patch'] +checksums = [ + 'fd9ca16de1052aac899ad3495ad20dfa906c27b4a5070102a2ec35ca3a4740c1', # xz-5.2.3.tar.bz2 + '578da3ea2ddb551972891a60fe31478b16a516d6ea8b6aa3af89e1d558adb703', # XZ-5.2.2_compat-libs.patch +] builddependencies = [ # use gettext built with dummy as build dep to avoid cyclic dependency (XZ -> gettext -> libxml2 -> XZ) -- GitLab From 7ae484f03ca743bf96b245ba30f8a98ee659d91f Mon Sep 17 00:00:00 2001 From: iotaka Date: Fri, 1 Sep 2017 09:15:54 +0200 Subject: [PATCH 467/845] Update CGNS-3.3.1-foss-2016b.eb --- easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb index 5e9f2fac97..9ee315a082 100644 --- a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -25,7 +25,7 @@ builddependencies = [ moduleclass = 'cae' sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["cgnscheck", "cgnscompress", "cgnsconvert", "cgnsdiff", - "cgnslist, "cgnsnames", "cgnsupdate"], "lib/libcgns.so", "include/cgnslib.h" ], + 'files': ["bin/%s" % x for x in ["cgnscheck", "cgnscompress", "cgnsconvert", "cgnsdiff", + "cgnslist", "cgnsnames", "cgnsupdate"]], 'dirs': [], } -- GitLab From 196bfd10f1dd905deae80a985a16f028893415b8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 10:18:48 +0200 Subject: [PATCH 468/845] adding easyconfigs: Python-3.6.2-intel-2017b.eb, Python-3.6.2-foss-2017b.eb --- .../p/Python/Python-3.6.2-foss-2017b.eb | 212 ++++++++++++++++++ .../p/Python/Python-3.6.2-intel-2017b.eb | 212 ++++++++++++++++++ 2 files changed, 424 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb new file mode 100644 index 0000000000..354e6f710a --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb @@ -0,0 +1,212 @@ +name = 'Python' +version = '3.6.2' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['7919489310a5f17f7acbab64d731e46dca0702874840dadce8bd4b2b3b8e7a82'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + ('GMP', '6.1.2'), + ('XZ', '5.2.3'), + ('libffi', '3.2.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated August 31st 2017 +exts_list = [ + ('setuptools', '36.3.0', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'checksums': [ + 'e9fa391c1183b40fc6a1298bee02d554743f23c805a3b75dbb18def0f0755fb1', # setuptools-36.3.0.zip + ], + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + 'checksums': [ + '09f243e1a7b461f654c26a725fa373211bb7ff17a9300058b205c61658ca940d', # pip-9.0.1.tar.gz + ], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + 'checksums': [ + 'f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98', # nose-1.3.7.tar.gz + ], + }), + ('numpy', '1.13.1', { + 'patches': ['numpy-1.12.0-mkl.patch'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'checksums': [ + 'c9b0283776085cb2804efff73e9955ca279ba4edafd58d3ead70b61d209c4fbb', # numpy-1.13.1.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch + ], + }), + ('scipy', '0.19.1', { + 'source_tmpl': '%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'checksums': [ + 'a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6', # scipy-0.19.1.tar.gz + ], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + 'checksums': [ + '3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3', # blist-1.3.6.tar.gz + ], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + 'checksums': [ + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz + ], + }), + ('paycheck', '1.0.2', { + 'patches': ['paycheck-1.0.2_setup-open-README-utf8.patch'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'checksums': [ + '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', # paycheck-1.0.2_setup-open-README-utf8.patch + ], + }), + ('pbr', '3.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + 'checksums': [ + '05f61c71aaefc02d8e37c0a3eeb9815ff526ea28b3b76324769e6158d7f95be1', # pbr-3.1.1.tar.gz + ], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + 'checksums': [ + '6aed02de03cba24efabcd600b30540140634fc06cfa603822d508d5361e9f799', # lockfile-0.12.2.tar.gz + ], + }), + ('Cython', '0.26.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': [ + 'c2e63c4794161135adafa8aa4a855d6068073f421c83ffacc39369497a189dd5', # Cython-0.26.1.tar.gz + ], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'checksums': [ + '105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a', # six-1.10.0.tar.gz + ], + }), + ('dateutil', '2.6.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'checksums': [ + '891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca', # python-dateutil-2.6.1.tar.gz + ], + }), + ('deap', '1.0.2', { + 'patches': ['deap-1.0.2_setup-open-README-utf8.patch'], + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'checksums': [ + 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', # deap-1.0.2_setup-open-README-utf8.patch + ], + }), + ('decorator', '4.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + 'checksums': [ + '7cb64d38cb8002971710c8899fbdfb859a23a364b7c99dab19d1f719c2ba16b5', # decorator-4.1.2.tar.gz + ], + }), + ('arff', '2.1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + 'checksums': [ + 'b8ef2c64ae5318f6884dc0e20b8491b0b1c96151a40077a479e0f57257cab817', # liac-arff-2.1.1.tar.gz + ], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + 'checksums': [ + 'f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c', # pycrypto-2.6.1.tar.gz + ], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + 'checksums': [ + '64cf1ee26d1cde3c73c6d7d107f835fed7c6a2904aef9eac223d57ad800c43fa', # ecdsa-0.13.tar.gz + ], + }), + ('cryptography', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + 'checksums': [ + 'd04bb2425086c3fe86f7bc48915290b13e798497839fbb18ab7f6dffcf98cc3a', # cryptography-2.0.3.tar.gz + ], + }), + ('paramiko', '2.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + 'checksums': [ + 'ff94ae65379914ec3c960de731381f49092057b6dd1d24d18842ead5a2eb2277', # paramiko-2.2.1.tar.gz + ], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'checksums': [ + '0832bcf47acd283788593e7a0f542407bd9550a55a8a8435214a1960e04bcb04', # pyparsing-2.2.0.tar.gz + ], + }), + ('netifaces', '0.10.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + 'checksums': [ + '0c4da523f36d36f1ef92ee183f2512f3ceb9a9d2a45f7d19cda5a42c6689ebe0', # netifaces-0.10.6.tar.gz + ], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + 'checksums': [ + '38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd', # netaddr-0.7.19.tar.gz + ], + }), + ('pandas', '0.20.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + 'checksums': [ + 'a777e07633d83d546c55706420179551c8e01075b53c497dcf8ae4036766bc66', # pandas-0.20.3.tar.gz + ], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + 'checksums': [ + '02f8102c2436bb03b3ee6dede1919d1dac8a427541652e5ec95171ec8adbc93a', # virtualenv-15.1.0.tar.gz + ], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + 'checksums': [ + '49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491', # docopt-0.6.2.tar.gz + ], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + 'checksums': [ + '7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085', # joblib-0.11.tar.gz + ], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb new file mode 100644 index 0000000000..3e733d76e1 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb @@ -0,0 +1,212 @@ +name = 'Python' +version = '3.6.2' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['7919489310a5f17f7acbab64d731e46dca0702874840dadce8bd4b2b3b8e7a82'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + ('GMP', '6.1.2'), + ('XZ', '5.2.3'), + ('libffi', '3.2.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated August 31st 2017 +exts_list = [ + ('setuptools', '36.3.0', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'checksums': [ + 'e9fa391c1183b40fc6a1298bee02d554743f23c805a3b75dbb18def0f0755fb1', # setuptools-36.3.0.zip + ], + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + 'checksums': [ + '09f243e1a7b461f654c26a725fa373211bb7ff17a9300058b205c61658ca940d', # pip-9.0.1.tar.gz + ], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + 'checksums': [ + 'f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98', # nose-1.3.7.tar.gz + ], + }), + ('numpy', '1.13.1', { + 'patches': ['numpy-1.12.0-mkl.patch'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'checksums': [ + 'c9b0283776085cb2804efff73e9955ca279ba4edafd58d3ead70b61d209c4fbb', # numpy-1.13.1.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch + ], + }), + ('scipy', '0.19.1', { + 'source_tmpl': '%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'checksums': [ + 'a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6', # scipy-0.19.1.tar.gz + ], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + 'checksums': [ + '3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3', # blist-1.3.6.tar.gz + ], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + 'checksums': [ + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz + ], + }), + ('paycheck', '1.0.2', { + 'patches': ['paycheck-1.0.2_setup-open-README-utf8.patch'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'checksums': [ + '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', # paycheck-1.0.2_setup-open-README-utf8.patch + ], + }), + ('pbr', '3.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + 'checksums': [ + '05f61c71aaefc02d8e37c0a3eeb9815ff526ea28b3b76324769e6158d7f95be1', # pbr-3.1.1.tar.gz + ], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + 'checksums': [ + '6aed02de03cba24efabcd600b30540140634fc06cfa603822d508d5361e9f799', # lockfile-0.12.2.tar.gz + ], + }), + ('Cython', '0.26.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': [ + 'c2e63c4794161135adafa8aa4a855d6068073f421c83ffacc39369497a189dd5', # Cython-0.26.1.tar.gz + ], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'checksums': [ + '105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a', # six-1.10.0.tar.gz + ], + }), + ('dateutil', '2.6.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'checksums': [ + '891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca', # python-dateutil-2.6.1.tar.gz + ], + }), + ('deap', '1.0.2', { + 'patches': ['deap-1.0.2_setup-open-README-utf8.patch'], + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'checksums': [ + 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', # deap-1.0.2_setup-open-README-utf8.patch + ], + }), + ('decorator', '4.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + 'checksums': [ + '7cb64d38cb8002971710c8899fbdfb859a23a364b7c99dab19d1f719c2ba16b5', # decorator-4.1.2.tar.gz + ], + }), + ('arff', '2.1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + 'checksums': [ + 'b8ef2c64ae5318f6884dc0e20b8491b0b1c96151a40077a479e0f57257cab817', # liac-arff-2.1.1.tar.gz + ], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + 'checksums': [ + 'f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c', # pycrypto-2.6.1.tar.gz + ], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + 'checksums': [ + '64cf1ee26d1cde3c73c6d7d107f835fed7c6a2904aef9eac223d57ad800c43fa', # ecdsa-0.13.tar.gz + ], + }), + ('cryptography', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + 'checksums': [ + 'd04bb2425086c3fe86f7bc48915290b13e798497839fbb18ab7f6dffcf98cc3a', # cryptography-2.0.3.tar.gz + ], + }), + ('paramiko', '2.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + 'checksums': [ + 'ff94ae65379914ec3c960de731381f49092057b6dd1d24d18842ead5a2eb2277', # paramiko-2.2.1.tar.gz + ], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'checksums': [ + '0832bcf47acd283788593e7a0f542407bd9550a55a8a8435214a1960e04bcb04', # pyparsing-2.2.0.tar.gz + ], + }), + ('netifaces', '0.10.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + 'checksums': [ + '0c4da523f36d36f1ef92ee183f2512f3ceb9a9d2a45f7d19cda5a42c6689ebe0', # netifaces-0.10.6.tar.gz + ], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + 'checksums': [ + '38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd', # netaddr-0.7.19.tar.gz + ], + }), + ('pandas', '0.20.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + 'checksums': [ + 'a777e07633d83d546c55706420179551c8e01075b53c497dcf8ae4036766bc66', # pandas-0.20.3.tar.gz + ], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + 'checksums': [ + '02f8102c2436bb03b3ee6dede1919d1dac8a427541652e5ec95171ec8adbc93a', # virtualenv-15.1.0.tar.gz + ], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + 'checksums': [ + '49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491', # docopt-0.6.2.tar.gz + ], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + 'checksums': [ + '7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085', # joblib-0.11.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From 34d414f80843b0f68b5d2c75dd0c559c312c4caf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 10:19:19 +0200 Subject: [PATCH 469/845] adding easyconfigs: Perl-5.26.0-intel-2017a.eb --- .../p/Perl/Perl-5.26.0-intel-2017a.eb | 1596 +++++++++++++++++ 1 file changed, 1596 insertions(+) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb new file mode 100644 index 0000000000..51fdb404df --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb @@ -0,0 +1,1596 @@ +name = 'Perl' +version = '5.26.0' + +homepage = 'https://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebe7c66906d4fb55449380ab1b7e004eeef52c38d3443fa301f8e17a1a4cb67f'] + +# !! order of extensions is important !! +# extensions updated on August 29th 2017 +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': [ + '0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad', # Config-General-2.63.tar.gz + ], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5', # File-Listing-6.04.tar.gz + ], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c', # ExtUtils-InstallPaths-0.011.tar.gz + ], + }), + ('ExtUtils::Helpers', '0.026', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416', # ExtUtils-Helpers-0.026.tar.gz + ], + }), + ('Test::Harness', '3.39', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '69bd44c81c6e1d2db18e298ecf631852608893ddfddb332a7d55285bbfc51132', # Test-Harness-3.39.tar.gz + ], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c', # ExtUtils-Config-0.008.tar.gz + ], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c', # Module-Build-Tiny-0.039.tar.gz + ], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb', # aliased-0.34.tar.gz + ], + }), + ('Text::Glob', '0.11', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287', # Text-Glob-0.11.tar.gz + ], + }), + ('Regexp::Common', '2017060201', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': [ + 'ee07853aee06f310e040b6bf1a0199a18d81896d3219b9b35c9630d0eb69089b', # Regexp-Common-2017060201.tar.gz + ], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': [ + '423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12', # go-perl-0.15.tar.gz + ], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': [ + 'b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df', # Module-Pluggable-5.2.tar.gz + ], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0', # Test-Fatal-0.014.tar.gz + ], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08', # Test-Warnings-0.026.tar.gz + ], + }), + ('File::ShareDir::Install', '0.11', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8', # File-ShareDir-Install-0.11.tar.gz + ], + }), + ('DateTime::Locale', '1.16', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe', # DateTime-Locale-1.16.tar.gz + ], + }), + ('DateTime::TimeZone', '2.13', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '333d39ccd6b883460409b9113bec43be256c3e763beedfb97b9eb274c9d4e18c', # DateTime-TimeZone-2.13.tar.gz + ], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': [ + '2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5', # Test-Requires-0.10.tar.gz + ], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d', # Module-Implementation-0.09.tar.gz + ], + }), + ('Module::Build', '0.4224', { + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'a6ca15d78244a7b50fdbf27f85c85f4035aa799ce7dd018a0d98b358ef7bc782', # Module-Build-0.4224.tar.gz + ], + }), + ('Module::Runtime', '0.015', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + 'checksums': [ + '67fcfaf4e33072924975675da9004bacc43fff9f61396135b93627cbe38e43c0', # Module-Runtime-0.015.tar.gz + ], + }), + ('Try::Tiny', '0.28', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'f1d166be8aa19942c4504c9111dade7aacb981bc5b3a2a5c5f6019646db8c146', # Try-Tiny-0.28.tar.gz + ], + }), + ('Params::Validate', '1.29', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '49a68dfb430bea028042479111d19068e08095e5a467e320b7ab7bde3d729733', # Params-Validate-1.29.tar.gz + ], + }), + ('List::MoreUtils', '0.423', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'b4d90b24809b399fda3772a45b1af9e29d89becf8ba4a4f78fa36234e4ed5396', # List-MoreUtils-0.423.tar.gz + ], + }), + ('Exporter::Tiny', '1.000000', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + 'checksums': [ + 'ffdd77d57de099e8f64dd942ef12a00a3f4313c2531f342339eeed2d366ad078', # Exporter-Tiny-1.000000.tar.gz + ], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': [ + '38220d04f02e3a803193c2575a1644cce0b95ad4b95c19eb932b94e2647ef678', # Class-Singleton-1.5.tar.gz + ], + }), + ('DateTime', '1.44', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'a7165a9b1bcef735e76ea44c184ea741840249dd1862b8465f3777cd8f0bd701', # DateTime-1.44.tar.gz + ], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '9a48433f86e08ce18e03526e2982de52162eb909d19735460f07eefcaf463ea6', # File-Find-Rule-Perl-1.15.tar.gz + ], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + 'checksums': [ + '4b23542491af010d44a5c7c861244738acc74ababae6b8838d354dfb19462b5e', # Readonly-2.05.tar.gz + ], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + 'checksums': [ + '9d4de21612253a1d3252ff7657d7e832dcf3cc2a748a8c84f73de618a3a38239', # Git-0.41.tar.gz + ], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + '2d04eb011aa06cee633c367d1f322b8d937020fde5d5393fad6a26c93725c4a8', # Tree-DAG_Node-1.29.tgz + ], + }), + ('Template', '2.27', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc', # Template-Toolkit-2.27.tar.gz + ], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + 'checksums': [ + '3c5e08329106f9cee3ab444b81331c5935f83084a151d88505e7a465da540f41', # FreezeThaw-0.5001.tar.gz + ], + }), + ('DBI', '1.637', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': [ + '2557712593e80142c3b50877e00369b6ce78fa26d44edc42156d81a5cdd26bc6', # DBI-1.637.tar.gz + ], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269', # DBD-SQLite-1.54.tar.gz + ], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '11a815fc45fdf0efabb1822ab77faad8b9eea162572c5f0940c8ed7d56e6b8b8', # Math-Bezier-0.01.tar.gz + ], + }), + ('Archive::Extract', '0.80', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '25cbc2d5626c14d39a0b5e4fe8383941e085c9a7e0aa873d86e81b6e709025f4', # Archive-Extract-0.80.tar.gz + ], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + 'checksums': [ + '445535b3dfab88140c7a0d2776b1e78f254dc7e9c81072d5a01afc95a5db499a', # DBIx-Simple-1.35.tar.gz + ], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + 'checksums': [ + 'f7dbebf65261ed0e5abd0f57052b64d665a1a830bab4c8bbc220f235bd39caf5', # Shell-0.73.tar.gz + ], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '36350e12f58871437ba03391f80a506e447e3c6630cc37d0625bc25ff1c7b4d2', # PathTools-3.62.tar.gz + ], + }), + ('Test::Simple', '1.302086', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '21e4c93c52529a10ef970afcf2cdb5719bcfef5f71af09cad3675fcf021995b1', # Test-Simple-1.302086.tar.gz + ], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + 'checksums': [ + 'a3dc1526f3dde72d3c64ea00007b86ce608cdcd93567cf6e6e42dc10fdc4511d', # Set-Scalar-1.29.tar.gz + ], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': [ + '8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d', # IO-stringy-2.111.tar.gz + ], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '176fa02771f542a4efb1dbc2a4c928e8f4391bf4078473bd6040d8f11adb0ec1', # Encode-Locale-1.05.tar.gz + ], + }), + ('XML::SAX::Base', '1.09', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '66cb355ba4ef47c10ca738bd35999723644386ac853abbeb5132841f5e8a2ad0', # XML-SAX-Base-1.09.tar.gz + ], + }), + ('XML::NamespaceSupport', '1.12', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': [ + '47e995859f8dd0413aa3f22d350c4a62da652e854267aa0586ae544ae2bae5ef', # XML-NamespaceSupport-1.12.tar.gz + ], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '32b04b8e36b6cc4cfc486de2d859d87af5386dd930f2383c49347050d6f5ad84', # XML-SAX-0.99.tar.gz + ], + }), + ('Test::LeakTrace', '0.16', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEEJO'], + 'checksums': [ + '5f089eed915f1ec8c743f6d2777c3ecd0ca01df2f7b9e10038d316952583e403', # Test-LeakTrace-0.16.tar.gz + ], + }), + ('Test::Exception', '0.43', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '156b13f07764f766d8b45a43728f2439af81a3512625438deab783b7883eb533', # Test-Exception-0.43.tar.gz + ], + }), + ('Text::Table', '1.133', { + 'source_tmpl': 'Text-Table-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + 'cd9ee04860d09a19a9d6bd2254a4bf3144ac14a63c08f15a1e28601b4b2f7012', # Text-Table-1.133.tar.gz + ], + }), + ('MIME::Types', '2.13', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': [ + '99c3376357bbe22cc8b6c78f560aa18d81621287695cd629008a6c4e66b77bf8', # MIME-Types-2.13.tar.gz + ], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + 'checksums': [ + '15762fa4e43b41302cff261c7ad75aacdc874f416981f206d783f20acd023adb', # Module-Build-XSUtil-0.16.tar.gz + ], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + 'checksums': [ + '0b1617af218dfab911ba0fbd72210529a246efe140332da77fe3e03d11000117', # Tie-Function-0.02.tar.gz + ], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + 'checksums': [ + '0865836a1bcbc34d4a0ee34b5ccc14d7b511f1fd300bf390f002dac349539843', # Template-Plugin-Number-Format-1.06.tar.gz + ], + }), + ('HTML::Parser', '3.72', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + 'ec28c7e1d9e67c45eca197077f7cdc41ead1bb4c538c7f02a3296a4bb92f608b', # HTML-Parser-3.72.tar.gz + ], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + 'checksums': [ + 'c36fd2b68d48c2e17417bf2873c78820f3ae02460fdf5976b8eeab887d59e16c', # Date-Handler-1.2.tar.gz + ], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '30f1ec3f2cf9ff66ae96f973333f23c5f558915bb6266881eac7423f52d7c76c', # Params-Util-1.07.tar.gz + ], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + 'checksums': [ + 'ea78d2d743794adc028bc9589538eb867174b4e165d7d8b5f63486e6b828e7e0', # IO-HTML-1.001.tar.gz + ], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + 'checksums': [ + '4571059b7b5d48b7ce52b01389e95d798bf5cf2020523c153ff27b498153c9cb', # libxml-perl-0.08.tar.gz + ], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + 'checksums': [ + '8816f34e9a38e849a10df756030dccf9fe061a196c11ac3faafd7113c929b964', # Class-ISA-0.36.tar.gz + ], + }), + ('URI', '1.72', { + 'source_tmpl': 'URI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '35f14431d4b300de4be1163b0b5332de2d7fbda4f05ff1ed198a8e9330d40a32', # URI-1.72.tar.gz + ], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + 'checksums': [ + '8b481ceedbf0ae4a83effb80581550008bfdd3885ef01145e3733c7097c00a08', # Ima-DBI-0.35.tar.gz + ], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + 'checksums': [ + 'fabb0b8c97e67c9b34b6cc18ed66f6c5e01c55b257dcf007555e0b027d4caf56', # Tie-IxHash-1.23.tar.gz + ], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + 'checksums': [ + '8eb73d591ad767e7cf26def40cffd84833875f1ad51e456960b9ed73dc23641b', # go-db-perl-0.04.tar.gz + ], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + 'c4661b00afb7e53c97ac36e13f34dde43c1a93540a2f4ff97e6182b0c731e4e7', # Class-DBI-SQLite-0.11.tar.gz + ], + }), + ('Pod::POM', '2.01', { + 'source_tmpl': 'Pod-POM-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + '1b50fba9bbdde3ead192beeba0eaddd0c614e3afb1743fa6fff805f57c56f7f4', # Pod-POM-2.01.tar.gz + ], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + 'checksums': [ + '73a7329a86e54a5c29a440382e5803095b58f33129e61a1df0093b4824de9327', # Math-Round-0.07.tar.gz + ], + }), + ('Text::Diff', '1.45', { + 'source_tmpl': 'Text-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + 'e8baa07b1b3f53e00af3636898bbf73aec9a0ff38f94536ede1dbe96ef086f04', # Text-Diff-1.45.tar.gz + ], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'aa12d1a4c0ac260b94d448fa01feba242a8a85cb6cbfdc66432e3b5b468add96', # Log-Message-Simple-0.10.tar.gz + ], + }), + ('IO::Socket::SSL', '2.050', { + 'source_tmpl': 'IO-Socket-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + 'checksums': [ + '54e6716e40df8b1c168d8f54a0b8f215313739bd99dda17adb7c00fe94656692', # IO-Socket-SSL-2.050.tar.gz + ], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'dce28e3932762c2ff92aa52d90405c06e898e81cb7b164ccae8966ae77f1dcab', # Fennec-Lite-0.004.tar.gz + ], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'b4f3f63b80f680a421332d8851ddbe5a8e72fcaa74d5d1d98f3c8cc4a3ece293', # Sub-Uplevel-0.2800.tar.gz + ], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'e7ac289b88d1662e87708d716877ac66a1a8414660996fe58c1db96d834a5375', # Meta-Builder-0.003.tar.gz + ], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '4bd70d6ca76f6f6ba7e4c618d4ac93b8593a58f1233ccbe18b10f5f204f1d4e4', # Exporter-Declare-0.114.tar.gz + ], + }), + ('Getopt::Long', '2.50', { + 'source_tmpl': 'Getopt-Long-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + 'checksums': [ + '20881adb2b73e83825f9a0a3b141db11b3a555e1d3775b13d81d0481623e4b67', # Getopt-Long-2.50.tar.gz + ], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'bd697dd62aaf26d118e9f0a0813429deb1c544e4501559879b61fcbdfe99fe46', # Log-Message-0.08.tar.gz + ], + }), + ('Mouse', 'v2.4.10', { + 'source_tmpl': 'Mouse-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + 'checksums': [ + 'b995dda1918fcebecff34458b6abd16c06b6a7844572c7293d72a24d18126d14', # Mouse-v2.4.10.tar.gz + ], + }), + ('Test::Version', '2.05', { + 'source_tmpl': 'Test-Version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + '39c0ec02663da0e56962bdafaef6790cf83d12b4d90e8a4cdc971d57d869d63f', # Test-Version-2.05.tar.gz + ], + }), + ('DBIx::Admin::TableInfo', '3.03', { + 'source_tmpl': 'DBIx-Admin-TableInfo-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'a852530f95957a43aa794f2edf5f3fe4ecec35bd20150c38136d4c23d85328b6', # DBIx-Admin-TableInfo-3.03.tgz + ], + }), + ('Net::HTTP', '6.16', { + 'source_tmpl': 'Net-HTTP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + '70c45b6aaf3e9fb1ce30a1fc3cf828cfaee45c5c0bd147b2f617efade1765e78', # Net-HTTP-6.16.tar.gz + ], + }), + ('Test::Deep', '1.127', { + 'source_tmpl': 'Test-Deep-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'b78cfc59c41ba91f47281e2c1d2bfc4b3b1b42bfb76b4378bc88cc37b7af7268', # Test-Deep-1.127.tar.gz + ], + }), + ('Test::Warn', '0.32', { + 'source_tmpl': 'Test-Warn-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BIGJ'], + 'checksums': [ + '2fc516e71f9ef453be22a4619d91eb3f78df414a57dfa0fd745d3bff50bf73d2', # Test-Warn-0.32.tar.gz + ], + }), + ('MRO::Compat', '0.13', { + 'source_tmpl': 'MRO-Compat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '8a2c3b6ccc19328d5579d02a7d91285e2afd85d801f49d423a8eb16f323da4f8', # MRO-Compat-0.13.tar.gz + ], + }), + ('Moo', '2.003002', { + 'source_tmpl': 'Moo-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + 'f3e9741e79baa63e89f5a08706cd80d18c0a5a37e3d898847e002310e06582f1', # Moo-2.003002.tar.gz + ], + }), + ('Hash::Merge', '0.200', { + 'source_tmpl': 'Hash-Merge-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '47f9f03330b7595c94e73bdd17dc6682ba59d1cc89e63f4e319617f4bb122a64', # Hash-Merge-0.200.tar.gz + ], + }), + ('SQL::Abstract', '1.84', { + 'source_tmpl': 'SQL-Abstract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILMARI'], + 'checksums': [ + '655f4aa3d4ea7ca0a7bafb2beff84010d5c77f0ee4413baa0c86456bf6db5e75', # SQL-Abstract-1.84.tar.gz + ], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '68c01d94f005d5ca9c4d55ad2a1bf3a8d034a5fc6db187d91a4c42f3fdc9fc36', # HTML-Form-6.03.tar.gz + ], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + 'checksums': [ + '84ccbddf3894a88a2c2b6be68ff6ef8960037803bb36aa228b31944cfdf6deeb', # File-Copy-Recursive-0.38.tar.gz + ], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '83293737e803b43112830443fb5208ec5208a2e6ea512ed54ef8e4dd2b880827', # Number-Compare-0.03.tar.gz + ], + }), + ('IPC::Run', '0.96', { + 'source_tmpl': 'IPC-Run-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'bbd24ff027e1c232b3dc027562c9f4386da72b76991d30f9f3d4119e87cf4640', # IPC-Run-0.96.tar.gz + ], + }), + ('HTML::Entities::Interpolate', '1.10', { + 'source_tmpl': 'HTML-Entities-Interpolate-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'f15a9df92c282419f7010964aca1ada844ddfae7afc735cd2ba1bb20883e955c', # HTML-Entities-Interpolate-1.10.tgz + ], + }), + ('File::Remove', '1.57', { + 'source_tmpl': 'File-Remove-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + 'b3becd60165c38786d18285f770b8b06ebffe91797d8c00cc4730614382501ad', # File-Remove-1.57.tar.gz + ], + }), + ('YAML::Tiny', '1.70', { + 'source_tmpl': 'YAML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'bbce4b52b5eafdb04e3043975a08dbf394d00b7d2c958adb9d03d9f7e9291255', # YAML-Tiny-1.70.tar.gz + ], + }), + ('Module::Install', '1.18', { + 'source_tmpl': 'Module-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '29068ac33502cec959844c206516c09cc4a847cb57327d41015f605153ca645e', # Module-Install-1.18.tar.gz + ], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '06f82d076501701d78b8dc40b7688507bcc6c58b1beafd559e05bb0644df00a2', # Test-ClassAPI-1.06.tar.gz + ], + }), + ('Test::Most', '0.35', { + 'source_tmpl': 'Test-Most-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OV/OVID'], + 'checksums': [ + '9897a6f4d751598d2ed1047e01c1554b01d0f8c96c45e7e845229782bf6f657f', # Test-Most-0.35.tar.gz + ], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + 'cdb1e0cdf8380fb9b63b44c33ce5afc1068736d55ac5904bf0eaa1efc1c3cefc', # Class-Accessor-0.34.tar.gz + ], + }), + ('Test::Differences', '0.64', { + 'source_tmpl': 'Test-Differences-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + 'checksums': [ + '9f459dd9c2302a0a73e2f5528a0ce7d09d6766f073187ae2c69e603adf2eb276', # Test-Differences-0.64.tar.gz + ], + }), + ('HTTP::Tiny', '0.070', { + 'source_tmpl': 'HTTP-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + '74f385d1e96de887a4df5a222d93afdc7d81ea9ad721a56ff3d8449bb12f7733', # HTTP-Tiny-0.070.tar.gz + ], + }), + ('Package::DeprecationManager', '0.17', { + 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '1d743ada482b5c9871d894966e87d4c20edc96931bb949fb2638b000ddd6684b', # Package-DeprecationManager-0.17.tar.gz + ], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '68c1dac2187421f0eb7abf71452a06f190181b8fc4b28ededf5b90296fb943cc', # Digest-SHA1-2.13.tar.gz + ], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86', # TimeDate-2.30.tar.gz + ], + }), + ('version', '0.9918', { + 'source_tmpl': 'version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + 'checksums': [ + '54175c7ead4e2259c2fb2b83440b821e4287842067227e48fb899b5cae52237b', # version-0.9918.tar.gz + ], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'b4f3f63b80f680a421332d8851ddbe5a8e72fcaa74d5d1d98f3c8cc4a3ece293', # Sub-Uplevel-0.2800.tar.gz + ], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + 'patches': ['XML-Bare-0.53_icc.patch'], + 'checksums': [ + '865e198e98d904be1683ef5a53a4948f02dabdacde59fc554a082ffbcc5baefd', # XML-Bare-0.53.tar.gz + '7d005e44222a0ce130b8ba4912a869675c0aa9ce4d1b95caba06b683b69f2b20', # XML-Bare-0.53_icc.patch + ], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + 'ea844b9686c94d666d9d444321d764490b2cde2f985c4165b4c2c77665caedc4', # Dist-CheckConflicts-0.11.tar.gz + ], + }), + ('Sub::Name', '0.21', { + 'source_tmpl': 'Sub-Name-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'bd32e9dee07047c10ae474c9f17d458b6e9885a6db69474c7a494ccc34c27117', # Sub-Name-0.21.tar.gz + ], + }), + ('Time::Piece', '1.3201', { + 'source_tmpl': 'Time-Piece-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ES/ESAYM'], + 'checksums': [ + '81dbe694474a13d9683c392edd54bd77b6bd6d20b41433358487b51eb71e31bd', # Time-Piece-1.3201.tar.gz + ], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '3bc72c6d3ff144d73aefb90e9a78d33612d58cf1cd1631ecfb8985ba96da4a59', # Digest-HMAC-1.03.tar.gz + ], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '1c729c1ea63100e878405cda7d66f9adfd3ed4f1d6cacaca0ee9152df728e016', # HTTP-Negotiate-6.01.tar.gz + ], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '8f39901bc580bc3dce69e10415305e4435ff90264c63d29f707b4566460be962', # MIME-Lite-3.030.tar.gz + ], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'cd7209a6dfe0a3dc8caffe1aa2233b0e6effec7572d76a7a93feefffe636214e', # Crypt-Rijndael-1.13.tar.gz + ], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'dc49408964fd8b7963859c92e013f0b9f92f74be5a7c2a78e3996279827c10b3', # B-Lint-1.20.tar.gz + ], + }), + ('Canary::Stability', '2012', { + 'source_tmpl': 'Canary-Stability-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + 'checksums': [ + 'fd240b111d834dbae9630c59b42fae2145ca35addc1965ea311edf0d07817107', # Canary-Stability-2012.tar.gz + ], + }), + ('AnyEvent', '7.14', { + 'source_tmpl': 'AnyEvent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + 'checksums': [ + '539358d225bad34b4a64f5217f8c2a707b15e3a28c74120c9dd2270c7cca7d2a', # AnyEvent-7.14.tar.gz + ], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '76cb824a27b6b4e560409fcf6fd5b3bfbbd38b72f1f3d37ed0b54bd9c0baeade', # Object-Accessor-0.48.tar.gz + ], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '3cc7b2a3a7b74b45a059e013f7fd878078500ea4b7269036f84556b022078667', # Data-UUID-1.221.tar.gz + ], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'c1a1d3cedf4a579e3aad89c36f9878a8542b6656dbe71f1581420f49582d7efb', # Test-Pod-1.51.tar.gz + ], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + '1177027025ecb09ee64d9f9f255615c04db5e14f7536c344af632032eb887b0f', # AppConfig-1.71.tar.gz + ], + }), + ('Net::SMTP::SSL', '1.04', { + 'source_tmpl': 'Net-SMTP-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '7b29c45add19d3d5084b751f7ba89a8e40479a446ce21cfd9cc741e558332a00', # Net-SMTP-SSL-1.04.tar.gz + ], + }), + ('XML::Tiny', '2.07', { + 'source_tmpl': 'XML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + 'checksums': [ + 'ce39fcb53e0fe9f1cbcd86ddf152e1db48566266b70ec0769ef364eeabdd8941', # XML-Tiny-2.07.tar.gz + ], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + 'checksums': [ + 'adb17dac9e36cd011f5243881c9739417fd102fce760f8de4e9be4c7131108e2', # HTML-Tagset-3.20.tar.gz + ], + }), + ('HTML::Tree', '5.06', { + 'source_tmpl': 'HTML-Tree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KE/KENTNL'], + 'checksums': [ + '9c36eb19cbdf9a5906c858948ca51c35bd7561f52cc18c43281acbe57327536e', # HTML-Tree-5.06.tar.gz + ], + }), + ('Devel::GlobalDestruction', '0.14', { + 'source_tmpl': 'Devel-GlobalDestruction-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '34b8a5f29991311468fe6913cadaba75fd5d2b0b3ee3bb41fe5b53efab9154ab', # Devel-GlobalDestruction-0.14.tar.gz + ], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '46b502e7a288d559429891eeb5d979461dd3ecc6a5c491ead85d165b6e03a51e', # WWW-RobotRules-6.02.tar.gz + ], + }), + ('Expect', '1.35', { + 'source_tmpl': 'Expect-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JA/JACOBY'], + 'checksums': [ + '09d92761421decd495853103379165a99efbf452c720f30277602cf23679fd06', # Expect-1.35.tar.gz + ], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '91946c80d7f4aab0ca4bfedc3bbe0a75b37cab1a29bd7bca3b3b7456d417e9a6', # Term-UI-0.46.tar.gz + ], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + 'checksums': [ + '14c37bc1cbb3f3cdc7d6c13e0f27a859f14cdcfd5ea54a0467a88bc259b0b741', # Net-SNMP-v6.0.1.tar.gz + ], + }), + ('XML::SAX::Writer', '0.57', { + 'source_tmpl': 'XML-SAX-Writer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': [ + '3d61d07ef43b0126f5b4de4f415a256fa859fa88dc4fdabaad70b7be7c682cf0', # XML-SAX-Writer-0.57.tar.gz + ], + }), + ('Statistics::Descriptive', '3.0612', { + 'source_tmpl': 'Statistics-Descriptive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '772413148e5e00efb32f277c4254aa78b9112490a896208dcd0025813afdbf7a', # Statistics-Descriptive-3.0612.tar.gz + ], + }), + ('Class::Load', '0.24', { + 'source_tmpl': 'Class-Load-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '0bb983da46c146534fc77a556d6e40d925142f2eb43103534025ee545265ca36', # Class-Load-0.24.tar.gz + ], + }), + ('LWP::Simple', '6.26', { + 'source_tmpl': 'libwww-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + 'd0c5435275f8638ff36fff8f655ad2ccad1156e66cc47bfacfb9e44fc585b24f', # libwww-perl-6.26.tar.gz + ], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + '319601feec17fae344988a5ee91cfc6a0bcfe742af77dba254724c3268b2a60f', # Time-Piece-MySQL-0.06.tar.gz + ], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + '23d8c5c25768ef1dc0ce53b975796762df0d6e244445d06e48d794886c32d486', # Package-Stash-XS-0.28.tar.gz + ], + }), + ('GD::Graph', '1.54', { + 'source_tmpl': 'GDGraph-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + 'checksums': [ + 'b96f5c10b656c17d16ab65a1777c908297b028d3b6815f6d54b2337f006bfa4f', # GDGraph-1.54.tar.gz + ], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'd9f024c8e3637feccdebcf6479b6754b6c92f1209f567feaf0c23818af31ee3c', # Set-Array-0.30.tgz + ], + }), + ('boolean', '0.46', { + 'source_tmpl': 'boolean-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + 'checksums': [ + '95c088085c3e83bf680fe6ce16d8264ec26310490f7d1680e416ea7a118f156a', # boolean-0.46.tar.gz + ], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + 'checksums': [ + '82d659cb16461764fd44d11a9ce9e6a4f5e8767dc1069eb03467c6e55de257f3', # Number-Format-1.75.tar.gz + ], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': [ + '4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59', # Data-Stag-0.14.tar.gz + ], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '638a57658cb119af1fe5b15e73d47c2544dcfef84af0c6b1b2e97f08202b686c', # Test-NoWarnings-1.04.tar.gz + ], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + 'checksums': [ + '2db1ebb5837b4cb20051c0ee5b733b4453e3137df0a92306034c867621edd7e7', # Crypt-DES-2.07.tar.gz + ], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'cd13b7a0e91e8505a0ce4b25f40fab2c92bb28a99ef0d03da1001d95a32f0291', # Exporter-5.72.tar.gz + ], + }), + ('Class::Inspector', '1.32', { + 'source_tmpl': 'Class-Inspector-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + 'cefadc8b5338e43e570bc43f583e7c98d535c17b196bcf9084bb41d561cc0535', # Class-Inspector-1.32.tar.gz + ], + }), + ('Parse::RecDescent', '1.967015', { + 'source_tmpl': 'Parse-RecDescent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + 'checksums': [ + '1943336a4cb54f1788a733f0827c0c55db4310d5eae15e542639c9dd85656e37', # Parse-RecDescent-1.967015.tar.gz + ], + }), + ('Carp', '1.38', { + 'source_tmpl': 'Carp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'a5a9ce3cbb959dfefa8c2dd16552567199b286d39b0e55053ca247c038977101', # Carp-1.38.tar.gz + ], + }), + ('XML::XPath', '1.42', { + 'source_tmpl': 'XML-XPath-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + 'checksums': [ + '9e6ac67c2cead5f918a060b8b9ccdbdcaa6d610be8517bba42a96cd56748b512', # XML-XPath-1.42.tar.gz + ], + }), + ('Capture::Tiny', '0.46', { + 'source_tmpl': 'Capture-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + '5d7a6a830cf7f2b2960bf8b8afaac16a537ede64f3023827acea5bd24ca77015', # Capture-Tiny-0.46.tar.gz + ], + }), + ('JSON', '2.94', { + 'source_tmpl': 'JSON-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '12271b5cee49943bbdde430eef58f1fe64ba6561980b22c69585e08fc977dc6d', # JSON-2.94.tar.gz + ], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '543cb2e803ab913d44272c7da6a70bb62c19e467f3b12aaac4c9523259b083d6', # Sub-Exporter-0.987.tar.gz + ], + }), + ('Class::Load::XS', '0.10', { + 'source_tmpl': 'Class-Load-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '5bc22cf536ebfd2564c5bdaf42f0d8a4cee3d1930fc8b44b7d4a42038622add1', # Class-Load-XS-0.10.tar.gz + ], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + 'checksums': [ + 'cfb1768c24f55208e87405b17f537f0f303fa141891d0b22d509a941aa57e24e', # Set-IntSpan-Fast-1.15.tar.gz + ], + }), + ('Sub::Exporter::Progressive', '0.001013', { + 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + 'checksums': [ + 'd535b7954d64da1ac1305b1fadf98202769e3599376854b2ced90c382beac056', # Sub-Exporter-Progressive-0.001013.tar.gz + ], + }), + ('Data::Dumper::Concise', '2.023', { + 'source_tmpl': 'Data-Dumper-Concise-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'a6c22f113caf31137590def1b7028a7e718eface3228272d0672c25e035d5853', # Data-Dumper-Concise-2.023.tar.gz + ], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '452995beeabf0e923e65fdc627a725dbb12c9e10c00d8018c16d10ba62757f1e', # File-Slurp-Tiny-0.004.tar.gz + ], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + 'checksums': [ + '30e84ac4b31d40b66293f7b1221331c5a50561a39d580d85004d9c1fff991751', # Algorithm-Diff-1.1903.tar.gz + ], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'be6a957f04a2feba9b305536b132deceba1f455db295b221a63e75567fadbcfc', # AnyData-0.12.tar.gz + ], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + 'checksums': [ + '5b80b7d5e709d34393bcba88971864a17b44a5bf0f9e4bcee383d029e7d2d5c3', # Text-Iconv-1.7.tar.gz + ], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '9967feceea15227e442ec818723163eb6d73b8947e31f16ab806f6e2391af14a', # Class-Data-Inheritable-0.08.tar.gz + ], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': [ + '057753f8f0568b53921f66a60a89c30092b73329bcc61a2c43339ab70c9792c8', # Text-Balanced-2.03.tar.gz + ], + }), + ('strictures', '2.000003', { + 'source_tmpl': 'strictures-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '27f8ea096a521e9754d36ea32889c2cda28346d04e3e399e7ea118d182dbaf22', # strictures-2.000003.tar.gz + ], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + 'checksums': [ + '31354975140fe6235ac130a109496491ad33dd42f9c62189e23f49f75f936d75', # Switch-2.17.tar.gz + ], + }), + ('File::Which', '1.21', { + 'source_tmpl': 'File-Which-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + '9def5f10316bfd944e56b7f8a2501be1d44c288325309462aa9345e340854bcc', # File-Which-1.21.tar.gz + ], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '579c617e303b9d874411c7b61b46b59d36f815718625074ae6832e7bb9db5104', # Email-Date-Format-1.005.tar.gz + ], + }), + ('Error', '0.17025', { + 'source_tmpl': 'Error-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '6c9f474ad3d4fe0cabff6b6be532cb1dd348245986d4a6b600ad921d5cfdefaf', # Error-0.17025.tar.gz + ], + }), + ('Mock::Quick', '1.111', { + 'source_tmpl': 'Mock-Quick-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'ff786008bf8c022064ececd3b7ed89c76b35e8d1eac6cf472a9f51771c1c9f2c', # Mock-Quick-1.111.tar.gz + ], + }), + ('Text::CSV', '1.95', { + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '7e0a11d9c1129a55b68a26aa4b37c894279df255aa63ec8341d514ab848dbf61', # Text-CSV-1.95.tar.gz + ], + }), + ('Test::Output', '1.031', { + 'source_tmpl': 'Test-Output-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + 'checksums': [ + 'f8b8f37185717872727d06f6c078fa77db794410faf2f6da4d37b0b7650f7ea4', # Test-Output-1.031.tar.gz + ], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '541354fe361c56850cb11261f6ca089a14573fa764792447444ff736ae626206', # Class-DBI-v3.0.17.tar.gz + ], + }), + ('List::AllUtils', '0.14', { + 'source_tmpl': 'List-AllUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'e45aa65927ae1975a000cc2fed14274627fa5e2bd09bab826a5f2c41d17ef6cd', # List-AllUtils-0.14.tar.gz + ], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + '94ce27a546cd57cb52e080a8f2533a7cc2350028388582485bd1039a37871f9c', # UNIVERSAL-moniker-0.08.tar.gz + ], + }), + ('Exception::Class', '1.43', { + 'source_tmpl': 'Exception-Class-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'ff3b4b3f706e84aaa87ab0dee5cec6bd7a8fc9f72cf76d115212541fa0a13760', # Exception-Class-1.43.tar.gz + ], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '66fb417f8ff8a5e5b7ea25606156e70e204861c59fa8c3831925b4dd3f155f8a', # File-CheckTree-4.42.tar.gz + ], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + 'checksums': [ + '409a8e0e4b1025c8e80f628f65a9778aa77ab285161406ca4a6c097b13656d0d', # Math-VecStat-0.08.tar.gz + ], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + 'checksums': [ + '15a840ea1c8a76cd3c865fbbf2fec33b03615c0daa50f9c800c54e0cf0659d46', # Pod-LaTeX-0.61.tar.gz + ], + }), + ('Eval::Closure', '0.14', { + 'source_tmpl': 'Eval-Closure-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + 'ea0944f2f5ec98d895bef6d503e6e4a376fea6383a6bc64c7670d46ff2218cad', # Eval-Closure-0.14.tar.gz + ], + }), + ('HTTP::Request', '6.13', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + 'f25f38428de851e5661e72f124476494852eb30812358b07f1c3a289f6f5eded', # HTTP-Message-6.13.tar.gz + ], + }), + ('XML::Twig', '3.52', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + 'checksums': [ + 'fef75826c24f2b877d0a0d2645212fc4fb9756ed4d2711614ac15c497e8680ad', # XML-Twig-3.52.tar.gz + ], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '2a3f4ad8442d9070780e58ef43722d19d1ee21a803bf7c8206877a10482de5a0', # IO-String-1.08.tar.gz + ], + }), + ('XML::Simple', '2.24', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '9a14819fd17c75fbb90adcec0446ceab356cab0ccaff870f2e1659205dc2424f', # XML-Simple-2.24.tar.gz + ], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '61e567a7679588887b7b86d427bc476ea6d77fffe7e0d17d640f89007d98ef0f', # Sub-Install-0.928.tar.gz + ], + }), + ('HTTP::Cookies', '6.04', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + '0cc7f079079dcad8293fea36875ef58dd1bfd75ce1a6c244cd73ed9523eb13d4', # HTTP-Cookies-6.04.tar.gz + ], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + 'checksums': [ + '1bbfbf7d1d4871e5a83bab2137e22d089078206815190eb1d5c1260a3499456f', # Pod-Plainer-1.04.tar.gz + ], + }), + ('Test::Exception::LessClever', '0.009', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34', # Test-Exception-LessClever-0.009.tar.gz + ], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '18790b0cc5f0a51468495c3847b16738f785a2d460403595001e0b932e5db676', # LWP-MediaTypes-6.02.tar.gz + ], + }), + ('Scalar::Util', '1.48', { + 'source_tmpl': 'Scalar-List-Utils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + 'checksums': [ + '0e5318308789ba3625e053001da0a6c5218dc73e561a207d1b91131d06c0d09f', # Scalar-List-Utils-1.48.tar.gz + ], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + '0b3035ffdb909aa1f7ded6b608fa9d894421c82c097d51e7171170d67579a9cb', # Data-Section-Simple-0.07.tar.gz + ], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + '6b1e45acc561e0708e00a2fcf16e157cad8b8963d1bf73726f77dd809b8aebc4', # Class-Trigger-0.14.tar.gz + ], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '43fd867742701a3f9fcc7bd59838ab72c6490c0ebaf66901068ec6997514adc2', # HTTP-Daemon-6.01.tar.gz + ], + }), + ('File::HomeDir', '1.002', { + 'source_tmpl': 'File-HomeDir-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'eb4c0c85775138460cd4013d8117232f08e88381c95c6a93b3d11e969185c274', # File-HomeDir-1.002.tar.gz + ], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + 'e8b9941da0f9f0c9c01068401a5e81341f0e3707d1c754f8e11f42a7e629e333', # HTTP-Date-6.02.tar.gz + ], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '6614fa7518f094f853741b63c73f3627168c5d3aca89b1d02b1016dc32854e09', # Authen-SASL-2.16.tar.gz + ], + }), + ('Clone', '0.39', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + 'checksums': [ + 'acb046683e49d650b113634ecf57df000816a49e611b0fff70bf3f93568bfa2d', # Clone-0.39.tar.gz + ], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + 'checksums': [ + 'b2296fdcf9addc8e8fc39e15eb2c3d81145f6355258438bc783b12b02c41cb81', # Data-Types-0.09.tar.gz + ], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + 'bd9e77a3fb662b40b43b18d3280cd352edf9fad8d94283e518181cc1ce9f0567', # Import-Into-1.002005.tar.gz + ], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'bd725df481d7223ee787e154c116098b08a129f55e0763194b07ebea3dda33ec', # DateTime-Tiny-1.06.tar.gz + ], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '247f0d88e55076fd3f6c7bf3fd527989d62fcc1ef9bde9bf2ee11c280adcaeab', # DBD-AnyData-0.110.tar.gz + ], + }), + ('Text::Format', '0.60', { + 'source_tmpl': 'Text-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '664f313570604624ff9e1fc9b26b6d04e06897b3e4eac83089fc0905a692a2b8', # Text-Format-0.60.tar.gz + ], + }), + ('Devel::CheckCompiler', '0.07', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + 'checksums': [ + '768b7697b4b8d4d372c7507b65e9dd26aa4223f7100183bbb4d3af46d43869b5', # Devel-CheckCompiler-0.07.tar.gz + ], + }), + ('Log::Handler', '0.88', { + 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + 'checksums': [ + '45bf540ab2138ed3ff93afc205b0516dc75755b86acdcc5e75c41347833c293d', # Log-Handler-0.88.tar.gz + ], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '85e2f805bfc81cd738c294316b27a515397036f397a0ff1c6c8d754c38530306', # DBIx-ContextualFetch-1.03.tar.gz + ], + }), + ('Devel::StackTrace', '2.02', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'cbbd96db0ecf194ed140198090eaea0e327d9a378a4aa15f9a34b3138a91931f', # Devel-StackTrace-2.02.tar.gz + ], + }), + ('Term::ReadKey', '2.37', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + 'checksums': [ + '4a9383cf2e0e0194668fe2bd546e894ffad41d556b41d2f2f577c8db682db241', # TermReadKey-2.37.tar.gz + ], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + 'checksums': [ + '11b7549b13ec5d87cc695dd4c777cd02983dd5fe9866012877fb530f48b3dfd0', # Set-IntSpan-1.19.tar.gz + ], + }), + ('Moose', '2.2006', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'a4e00ab25cc41bebc5e7a11d71375fb5e64b56d5f91159afee225d698e06392b', # Moose-2.2006.tar.gz + ], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + 'f27733e8d89cf2ab621284c2584da90ab0cb743ba2295ee739fe51bf92561e37', # Algorithm-Dependency-1.110.tar.gz + ], + }), + ('Font::TTF', '1.06', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': [ + '4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293', # Font-TTF-1.06.tar.gz + ], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565', # IPC-Run3-0.048.tar.gz + ], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe', # File-Find-Rule-0.34.tar.gz + ], + }), + ('SQL::Statement', '1.412', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '65c870883379c11b53f19ead10aaac241ccc86a90bbab77f6376fe750720e5c8', # SQL-Statement-1.412.tar.gz + ], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': [ + 'ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643', # File-Slurp-9999.19.tar.gz + ], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + '06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c', # Package-Stash-0.37.tar.gz + ], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3', # Data-OptList-0.110.tar.gz + ], + }), + ('CPANPLUS', '0.9168', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'ea7b3278a688721729244de4d8efc57536be833458d93172c412bdc7c3c1ed02', # CPANPLUS-0.9168.tar.gz + ], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d', # IO-Tty-1.12.tar.gz + ], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed', # Text-Soundex-3.05.tar.gz + ], + }), + ('Lingua::EN::PluralToSingular', '0.19', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': [ + 'c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e', # Lingua-EN-PluralToSingular-0.19.tar.gz + ], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': [ + 'b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7', # Want-0.29.tar.gz + ], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': [ + '7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77', # Cwd-Guard-0.05.tar.gz + ], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': [ + 'c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7', # Bundle-BioPerl-2.1.9.tar.gz + ], + }), + ('Mail::Util', '2.19', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': [ + 'c17ed702efea8eab56fe92961c07cd4980cee26ca6f13aff2688dc8af69c5e1a', # MailTools-2.19.tar.gz + ], + }), + ('Text::Template', '1.47', { + 'source_tmpl': 'Text-Template-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': [ + '50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc', # Text-Template-1.47.tar.gz + ], + }), + ('PDF::API2', '2.033', { + 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': [ + '9c0866ec1a3053f73afaca5f5cdbe6925903b4ce606f4bf4ac317731a69d27a0', # PDF-API2-2.033.tar.gz + ], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': [ + 'bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1', # Devel-CheckLib-1.11.tar.gz + ], + }), + ('SVG', '2.78', { + 'source_tmpl': 'SVG-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + 'checksums': [ + 'a665c1f18c0529f3da0f4b631976eb47e0f71f6d6784ef3f44d32fd76643d6bb', # SVG-2.78.tar.gz + ], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JE/JETTERO'], + 'checksums': [ + '6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb', # Statistics-Basic-1.6611.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From 1b6f4a55373362feba5c01927f3a29535911c4b5 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Fri, 1 Sep 2017 10:48:45 +0200 Subject: [PATCH 470/845] moving moduleclass to bottom of the easyconfig --- easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb index 9ee315a082..d1ef0ef3c7 100644 --- a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -22,10 +22,10 @@ builddependencies = [ ('CMake', '3.6.1'), ] -moduleclass = 'cae' - sanity_check_paths = { 'files': ["bin/%s" % x for x in ["cgnscheck", "cgnscompress", "cgnsconvert", "cgnsdiff", "cgnslist", "cgnsnames", "cgnsupdate"]], 'dirs': [], } + +moduleclass = 'cae' -- GitLab From 263b45c1b3f02cbddd55c301e383a292138e79bd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 11:19:48 +0200 Subject: [PATCH 471/845] add CMake + pkg-config as build deps, clean up configopts & co handled by updated ROOT easyblock --- .../ROOT-6.10.04-intel-2017a-Python-2.7.13.eb | 34 ++++++------------- 1 file changed, 11 insertions(+), 23 deletions(-) diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb index 6294637101..a5fbff5994 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-6.10.04-intel-2017a-Python-2.7.13.eb @@ -23,6 +23,10 @@ checksums = [ 'f97179b55bf862d884aba037eef12eed00829fb13f303c464d974331801cc2df', # ROOT-v5.34.26_libX.patch ] +builddependencies = [ + ('CMake', '3.8.2'), + ('pkg-config', '0.29.2'), +] dependencies = [ ('GSL', '2.3'), ('libxml2', '2.9.4'), @@ -35,31 +39,15 @@ dependencies = [ ('Mesa', '17.0.2'), ('libGLU', '9.0.0'), ('GL2PS', '1.4.0'), + ('FFTW', '3.3.6'), + ('SQLite', '3.17.0'), + ('XZ', '5.2.3'), ] -# use external ZLIB -preconfigopts = 'env ZLIB=$EBROOTZLIB ' - -# architecture -arch = 'linuxx8664icc' - -# disable features -configopts = ' --disable-xrootd --disable-mysql --disable-krb5 --disable-odbc ' -configopts += ' --disable-oracle --disable-pgsql --disable-qt --disable-sqlite' -# enable features -configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' -configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' -configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' -configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' -configopts += ' --with-cfitsio-incdir=$EBROOTCFITSIO/include --with-cfitsio-libdir=$EBROOTCFITSIO/lib' -configopts += ' --with-opengl-incdir=$EBROOTMESA/include --with-opengl-libdir=$EBROOTMESA/lib' -configopts += ' --with-x11-libdir=$EBROOTX11/lib --with-xext-libdir=$EBROOTLIBX11/lib' -configopts += ' --with-xft-libdir=$EBROOTX11/lib' -configopts += ' --with-xpm-incdir=$EBROOTX11/include --with-xpm-libdir=$EBROOTX11/lib' - -sanity_check_commands = ["python -c 'import ROOT'"] +# disable some components +configopts = "-Dxrootd=OFF -Dmysql=OFF -Dkrb5=OFF -Dodbc=OFF -Doracle=OFF -Dpgsql=OFF -Dqt=OFF " -modextrapaths = {'PYTHONPATH': 'lib/'} +# make sure some components are enabled +configopts += "-Dunuran=ON -Dtable=ON -Dexplicitlink=ON -Dminuit2=ON -Droofit=ON " moduleclass = 'data' -- GitLab From 3a92ea4ea4d4c25759f3c21747cd54f2c8550870 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 11:29:08 +0200 Subject: [PATCH 472/845] fix long lines in Python 3.6.2 easyconfigs --- easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb | 6 ++++-- easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb | 6 ++++-- 2 files changed, 8 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb index 354e6f710a..45c6e67aad 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.6.2-foss-2017b.eb @@ -84,7 +84,8 @@ exts_list = [ 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], 'checksums': [ '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz - 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', # paycheck-1.0.2_setup-open-README-utf8.patch + # paycheck-1.0.2_setup-open-README-utf8.patch + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', ], }), ('pbr', '3.1.1', { @@ -124,7 +125,8 @@ exts_list = [ 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], 'checksums': [ 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz - '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', # deap-1.0.2_setup-open-README-utf8.patch + # deap-1.0.2_setup-open-README-utf8.patch + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', ], }), ('decorator', '4.1.2', { diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb index 3e733d76e1..5afe59c970 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.6.2-intel-2017b.eb @@ -84,7 +84,8 @@ exts_list = [ 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], 'checksums': [ '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz - 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', # paycheck-1.0.2_setup-open-README-utf8.patch + # paycheck-1.0.2_setup-open-README-utf8.patch + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', ], }), ('pbr', '3.1.1', { @@ -124,7 +125,8 @@ exts_list = [ 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], 'checksums': [ 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz - '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', # deap-1.0.2_setup-open-README-utf8.patch + # deap-1.0.2_setup-open-README-utf8.patch + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', ], }), ('decorator', '4.1.2', { -- GitLab From 716c441a7d08d238d48612b9477eb8709f24488b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 11:32:13 +0200 Subject: [PATCH 473/845] fix toolchain version in Perl 5.26.0 easyconfig, should be intel/2017b --- .../{Perl-5.26.0-intel-2017a.eb => Perl-5.26.0-intel-2017b.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/p/Perl/{Perl-5.26.0-intel-2017a.eb => Perl-5.26.0-intel-2017b.eb} (99%) diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb similarity index 99% rename from easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb rename to easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb index 51fdb404df..9d460cc82d 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb @@ -4,7 +4,7 @@ version = '5.26.0' homepage = 'https://www.perl.org/' description = """Larry Wall's Practical Extraction and Report Language""" -toolchain = {'name': 'intel', 'version': '2017a'} +toolchain = {'name': 'intel', 'version': '2017b'} toolchainopts = {'pic': True} source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] -- GitLab From 65e03a503196a7288745f55e68a8f19dd4f0cf3a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 11:33:46 +0200 Subject: [PATCH 474/845] fix long lines --- .../easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb index 9d460cc82d..750a9f9177 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-intel-2017b.eb @@ -389,7 +389,8 @@ exts_list = [ 'source_tmpl': 'Template-Plugin-Number-Format-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], 'checksums': [ - '0865836a1bcbc34d4a0ee34b5ccc14d7b511f1fd300bf390f002dac349539843', # Template-Plugin-Number-Format-1.06.tar.gz + # Template-Plugin-Number-Format-1.06.tar.gz + '0865836a1bcbc34d4a0ee34b5ccc14d7b511f1fd300bf390f002dac349539843', ], }), ('HTML::Parser', '3.72', { @@ -711,7 +712,8 @@ exts_list = [ 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], 'checksums': [ - '1d743ada482b5c9871d894966e87d4c20edc96931bb949fb2638b000ddd6684b', # Package-DeprecationManager-0.17.tar.gz + # Package-DeprecationManager-0.17.tar.gz + '1d743ada482b5c9871d894966e87d4c20edc96931bb949fb2638b000ddd6684b', ], }), ('Digest::SHA1', '2.13', { @@ -1077,7 +1079,8 @@ exts_list = [ 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], 'checksums': [ - 'd535b7954d64da1ac1305b1fadf98202769e3599376854b2ced90c382beac056', # Sub-Exporter-Progressive-0.001013.tar.gz + # Sub-Exporter-Progressive-0.001013.tar.gz + 'd535b7954d64da1ac1305b1fadf98202769e3599376854b2ced90c382beac056', ], }), ('Data::Dumper::Concise', '2.023', { @@ -1294,7 +1297,8 @@ exts_list = [ 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], 'checksums': [ - '3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34', # Test-Exception-LessClever-0.009.tar.gz + # Test-Exception-LessClever-0.009.tar.gz + '3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34', ], }), ('LWP::MediaTypes', '6.02', { @@ -1525,7 +1529,8 @@ exts_list = [ 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], 'checksums': [ - 'c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e', # Lingua-EN-PluralToSingular-0.19.tar.gz + # Lingua-EN-PluralToSingular-0.19.tar.gz + 'c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e', ], }), ('Want', '0.29', { -- GitLab From 4c3220d5666d97cfe1cbb75129a6e5bf6a6003e5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 11:34:20 +0200 Subject: [PATCH 475/845] also add easyconfig for Perl 5.26.0 with foss/2017b --- .../p/Perl/Perl-5.26.0-foss-2017b.eb | 1601 +++++++++++++++++ 1 file changed, 1601 insertions(+) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.26.0-foss-2017b.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-foss-2017b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-foss-2017b.eb new file mode 100644 index 0000000000..1b7202c060 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-foss-2017b.eb @@ -0,0 +1,1601 @@ +name = 'Perl' +version = '5.26.0' + +homepage = 'https://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebe7c66906d4fb55449380ab1b7e004eeef52c38d3443fa301f8e17a1a4cb67f'] + +# !! order of extensions is important !! +# extensions updated on August 29th 2017 +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': [ + '0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad', # Config-General-2.63.tar.gz + ], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5', # File-Listing-6.04.tar.gz + ], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c', # ExtUtils-InstallPaths-0.011.tar.gz + ], + }), + ('ExtUtils::Helpers', '0.026', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416', # ExtUtils-Helpers-0.026.tar.gz + ], + }), + ('Test::Harness', '3.39', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '69bd44c81c6e1d2db18e298ecf631852608893ddfddb332a7d55285bbfc51132', # Test-Harness-3.39.tar.gz + ], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c', # ExtUtils-Config-0.008.tar.gz + ], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c', # Module-Build-Tiny-0.039.tar.gz + ], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb', # aliased-0.34.tar.gz + ], + }), + ('Text::Glob', '0.11', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287', # Text-Glob-0.11.tar.gz + ], + }), + ('Regexp::Common', '2017060201', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': [ + 'ee07853aee06f310e040b6bf1a0199a18d81896d3219b9b35c9630d0eb69089b', # Regexp-Common-2017060201.tar.gz + ], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': [ + '423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12', # go-perl-0.15.tar.gz + ], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': [ + 'b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df', # Module-Pluggable-5.2.tar.gz + ], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0', # Test-Fatal-0.014.tar.gz + ], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08', # Test-Warnings-0.026.tar.gz + ], + }), + ('File::ShareDir::Install', '0.11', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8', # File-ShareDir-Install-0.11.tar.gz + ], + }), + ('DateTime::Locale', '1.16', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe', # DateTime-Locale-1.16.tar.gz + ], + }), + ('DateTime::TimeZone', '2.13', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '333d39ccd6b883460409b9113bec43be256c3e763beedfb97b9eb274c9d4e18c', # DateTime-TimeZone-2.13.tar.gz + ], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': [ + '2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5', # Test-Requires-0.10.tar.gz + ], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d', # Module-Implementation-0.09.tar.gz + ], + }), + ('Module::Build', '0.4224', { + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'a6ca15d78244a7b50fdbf27f85c85f4035aa799ce7dd018a0d98b358ef7bc782', # Module-Build-0.4224.tar.gz + ], + }), + ('Module::Runtime', '0.015', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + 'checksums': [ + '67fcfaf4e33072924975675da9004bacc43fff9f61396135b93627cbe38e43c0', # Module-Runtime-0.015.tar.gz + ], + }), + ('Try::Tiny', '0.28', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'f1d166be8aa19942c4504c9111dade7aacb981bc5b3a2a5c5f6019646db8c146', # Try-Tiny-0.28.tar.gz + ], + }), + ('Params::Validate', '1.29', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '49a68dfb430bea028042479111d19068e08095e5a467e320b7ab7bde3d729733', # Params-Validate-1.29.tar.gz + ], + }), + ('List::MoreUtils', '0.423', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'b4d90b24809b399fda3772a45b1af9e29d89becf8ba4a4f78fa36234e4ed5396', # List-MoreUtils-0.423.tar.gz + ], + }), + ('Exporter::Tiny', '1.000000', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + 'checksums': [ + 'ffdd77d57de099e8f64dd942ef12a00a3f4313c2531f342339eeed2d366ad078', # Exporter-Tiny-1.000000.tar.gz + ], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': [ + '38220d04f02e3a803193c2575a1644cce0b95ad4b95c19eb932b94e2647ef678', # Class-Singleton-1.5.tar.gz + ], + }), + ('DateTime', '1.44', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'a7165a9b1bcef735e76ea44c184ea741840249dd1862b8465f3777cd8f0bd701', # DateTime-1.44.tar.gz + ], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '9a48433f86e08ce18e03526e2982de52162eb909d19735460f07eefcaf463ea6', # File-Find-Rule-Perl-1.15.tar.gz + ], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + 'checksums': [ + '4b23542491af010d44a5c7c861244738acc74ababae6b8838d354dfb19462b5e', # Readonly-2.05.tar.gz + ], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + 'checksums': [ + '9d4de21612253a1d3252ff7657d7e832dcf3cc2a748a8c84f73de618a3a38239', # Git-0.41.tar.gz + ], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + '2d04eb011aa06cee633c367d1f322b8d937020fde5d5393fad6a26c93725c4a8', # Tree-DAG_Node-1.29.tgz + ], + }), + ('Template', '2.27', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc', # Template-Toolkit-2.27.tar.gz + ], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + 'checksums': [ + '3c5e08329106f9cee3ab444b81331c5935f83084a151d88505e7a465da540f41', # FreezeThaw-0.5001.tar.gz + ], + }), + ('DBI', '1.637', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': [ + '2557712593e80142c3b50877e00369b6ce78fa26d44edc42156d81a5cdd26bc6', # DBI-1.637.tar.gz + ], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269', # DBD-SQLite-1.54.tar.gz + ], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '11a815fc45fdf0efabb1822ab77faad8b9eea162572c5f0940c8ed7d56e6b8b8', # Math-Bezier-0.01.tar.gz + ], + }), + ('Archive::Extract', '0.80', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '25cbc2d5626c14d39a0b5e4fe8383941e085c9a7e0aa873d86e81b6e709025f4', # Archive-Extract-0.80.tar.gz + ], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + 'checksums': [ + '445535b3dfab88140c7a0d2776b1e78f254dc7e9c81072d5a01afc95a5db499a', # DBIx-Simple-1.35.tar.gz + ], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + 'checksums': [ + 'f7dbebf65261ed0e5abd0f57052b64d665a1a830bab4c8bbc220f235bd39caf5', # Shell-0.73.tar.gz + ], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '36350e12f58871437ba03391f80a506e447e3c6630cc37d0625bc25ff1c7b4d2', # PathTools-3.62.tar.gz + ], + }), + ('Test::Simple', '1.302086', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '21e4c93c52529a10ef970afcf2cdb5719bcfef5f71af09cad3675fcf021995b1', # Test-Simple-1.302086.tar.gz + ], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + 'checksums': [ + 'a3dc1526f3dde72d3c64ea00007b86ce608cdcd93567cf6e6e42dc10fdc4511d', # Set-Scalar-1.29.tar.gz + ], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': [ + '8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d', # IO-stringy-2.111.tar.gz + ], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '176fa02771f542a4efb1dbc2a4c928e8f4391bf4078473bd6040d8f11adb0ec1', # Encode-Locale-1.05.tar.gz + ], + }), + ('XML::SAX::Base', '1.09', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '66cb355ba4ef47c10ca738bd35999723644386ac853abbeb5132841f5e8a2ad0', # XML-SAX-Base-1.09.tar.gz + ], + }), + ('XML::NamespaceSupport', '1.12', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': [ + '47e995859f8dd0413aa3f22d350c4a62da652e854267aa0586ae544ae2bae5ef', # XML-NamespaceSupport-1.12.tar.gz + ], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '32b04b8e36b6cc4cfc486de2d859d87af5386dd930f2383c49347050d6f5ad84', # XML-SAX-0.99.tar.gz + ], + }), + ('Test::LeakTrace', '0.16', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEEJO'], + 'checksums': [ + '5f089eed915f1ec8c743f6d2777c3ecd0ca01df2f7b9e10038d316952583e403', # Test-LeakTrace-0.16.tar.gz + ], + }), + ('Test::Exception', '0.43', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '156b13f07764f766d8b45a43728f2439af81a3512625438deab783b7883eb533', # Test-Exception-0.43.tar.gz + ], + }), + ('Text::Table', '1.133', { + 'source_tmpl': 'Text-Table-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + 'cd9ee04860d09a19a9d6bd2254a4bf3144ac14a63c08f15a1e28601b4b2f7012', # Text-Table-1.133.tar.gz + ], + }), + ('MIME::Types', '2.13', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': [ + '99c3376357bbe22cc8b6c78f560aa18d81621287695cd629008a6c4e66b77bf8', # MIME-Types-2.13.tar.gz + ], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + 'checksums': [ + '15762fa4e43b41302cff261c7ad75aacdc874f416981f206d783f20acd023adb', # Module-Build-XSUtil-0.16.tar.gz + ], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + 'checksums': [ + '0b1617af218dfab911ba0fbd72210529a246efe140332da77fe3e03d11000117', # Tie-Function-0.02.tar.gz + ], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + 'checksums': [ + # Template-Plugin-Number-Format-1.06.tar.gz + '0865836a1bcbc34d4a0ee34b5ccc14d7b511f1fd300bf390f002dac349539843', + ], + }), + ('HTML::Parser', '3.72', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + 'ec28c7e1d9e67c45eca197077f7cdc41ead1bb4c538c7f02a3296a4bb92f608b', # HTML-Parser-3.72.tar.gz + ], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + 'checksums': [ + 'c36fd2b68d48c2e17417bf2873c78820f3ae02460fdf5976b8eeab887d59e16c', # Date-Handler-1.2.tar.gz + ], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '30f1ec3f2cf9ff66ae96f973333f23c5f558915bb6266881eac7423f52d7c76c', # Params-Util-1.07.tar.gz + ], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + 'checksums': [ + 'ea78d2d743794adc028bc9589538eb867174b4e165d7d8b5f63486e6b828e7e0', # IO-HTML-1.001.tar.gz + ], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + 'checksums': [ + '4571059b7b5d48b7ce52b01389e95d798bf5cf2020523c153ff27b498153c9cb', # libxml-perl-0.08.tar.gz + ], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + 'checksums': [ + '8816f34e9a38e849a10df756030dccf9fe061a196c11ac3faafd7113c929b964', # Class-ISA-0.36.tar.gz + ], + }), + ('URI', '1.72', { + 'source_tmpl': 'URI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '35f14431d4b300de4be1163b0b5332de2d7fbda4f05ff1ed198a8e9330d40a32', # URI-1.72.tar.gz + ], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + 'checksums': [ + '8b481ceedbf0ae4a83effb80581550008bfdd3885ef01145e3733c7097c00a08', # Ima-DBI-0.35.tar.gz + ], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + 'checksums': [ + 'fabb0b8c97e67c9b34b6cc18ed66f6c5e01c55b257dcf007555e0b027d4caf56', # Tie-IxHash-1.23.tar.gz + ], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + 'checksums': [ + '8eb73d591ad767e7cf26def40cffd84833875f1ad51e456960b9ed73dc23641b', # go-db-perl-0.04.tar.gz + ], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + 'c4661b00afb7e53c97ac36e13f34dde43c1a93540a2f4ff97e6182b0c731e4e7', # Class-DBI-SQLite-0.11.tar.gz + ], + }), + ('Pod::POM', '2.01', { + 'source_tmpl': 'Pod-POM-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + '1b50fba9bbdde3ead192beeba0eaddd0c614e3afb1743fa6fff805f57c56f7f4', # Pod-POM-2.01.tar.gz + ], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + 'checksums': [ + '73a7329a86e54a5c29a440382e5803095b58f33129e61a1df0093b4824de9327', # Math-Round-0.07.tar.gz + ], + }), + ('Text::Diff', '1.45', { + 'source_tmpl': 'Text-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + 'e8baa07b1b3f53e00af3636898bbf73aec9a0ff38f94536ede1dbe96ef086f04', # Text-Diff-1.45.tar.gz + ], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'aa12d1a4c0ac260b94d448fa01feba242a8a85cb6cbfdc66432e3b5b468add96', # Log-Message-Simple-0.10.tar.gz + ], + }), + ('IO::Socket::SSL', '2.050', { + 'source_tmpl': 'IO-Socket-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + 'checksums': [ + '54e6716e40df8b1c168d8f54a0b8f215313739bd99dda17adb7c00fe94656692', # IO-Socket-SSL-2.050.tar.gz + ], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'dce28e3932762c2ff92aa52d90405c06e898e81cb7b164ccae8966ae77f1dcab', # Fennec-Lite-0.004.tar.gz + ], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'b4f3f63b80f680a421332d8851ddbe5a8e72fcaa74d5d1d98f3c8cc4a3ece293', # Sub-Uplevel-0.2800.tar.gz + ], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'e7ac289b88d1662e87708d716877ac66a1a8414660996fe58c1db96d834a5375', # Meta-Builder-0.003.tar.gz + ], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '4bd70d6ca76f6f6ba7e4c618d4ac93b8593a58f1233ccbe18b10f5f204f1d4e4', # Exporter-Declare-0.114.tar.gz + ], + }), + ('Getopt::Long', '2.50', { + 'source_tmpl': 'Getopt-Long-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + 'checksums': [ + '20881adb2b73e83825f9a0a3b141db11b3a555e1d3775b13d81d0481623e4b67', # Getopt-Long-2.50.tar.gz + ], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'bd697dd62aaf26d118e9f0a0813429deb1c544e4501559879b61fcbdfe99fe46', # Log-Message-0.08.tar.gz + ], + }), + ('Mouse', 'v2.4.10', { + 'source_tmpl': 'Mouse-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + 'checksums': [ + 'b995dda1918fcebecff34458b6abd16c06b6a7844572c7293d72a24d18126d14', # Mouse-v2.4.10.tar.gz + ], + }), + ('Test::Version', '2.05', { + 'source_tmpl': 'Test-Version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + '39c0ec02663da0e56962bdafaef6790cf83d12b4d90e8a4cdc971d57d869d63f', # Test-Version-2.05.tar.gz + ], + }), + ('DBIx::Admin::TableInfo', '3.03', { + 'source_tmpl': 'DBIx-Admin-TableInfo-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'a852530f95957a43aa794f2edf5f3fe4ecec35bd20150c38136d4c23d85328b6', # DBIx-Admin-TableInfo-3.03.tgz + ], + }), + ('Net::HTTP', '6.16', { + 'source_tmpl': 'Net-HTTP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + '70c45b6aaf3e9fb1ce30a1fc3cf828cfaee45c5c0bd147b2f617efade1765e78', # Net-HTTP-6.16.tar.gz + ], + }), + ('Test::Deep', '1.127', { + 'source_tmpl': 'Test-Deep-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'b78cfc59c41ba91f47281e2c1d2bfc4b3b1b42bfb76b4378bc88cc37b7af7268', # Test-Deep-1.127.tar.gz + ], + }), + ('Test::Warn', '0.32', { + 'source_tmpl': 'Test-Warn-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BIGJ'], + 'checksums': [ + '2fc516e71f9ef453be22a4619d91eb3f78df414a57dfa0fd745d3bff50bf73d2', # Test-Warn-0.32.tar.gz + ], + }), + ('MRO::Compat', '0.13', { + 'source_tmpl': 'MRO-Compat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '8a2c3b6ccc19328d5579d02a7d91285e2afd85d801f49d423a8eb16f323da4f8', # MRO-Compat-0.13.tar.gz + ], + }), + ('Moo', '2.003002', { + 'source_tmpl': 'Moo-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + 'f3e9741e79baa63e89f5a08706cd80d18c0a5a37e3d898847e002310e06582f1', # Moo-2.003002.tar.gz + ], + }), + ('Hash::Merge', '0.200', { + 'source_tmpl': 'Hash-Merge-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '47f9f03330b7595c94e73bdd17dc6682ba59d1cc89e63f4e319617f4bb122a64', # Hash-Merge-0.200.tar.gz + ], + }), + ('SQL::Abstract', '1.84', { + 'source_tmpl': 'SQL-Abstract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILMARI'], + 'checksums': [ + '655f4aa3d4ea7ca0a7bafb2beff84010d5c77f0ee4413baa0c86456bf6db5e75', # SQL-Abstract-1.84.tar.gz + ], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '68c01d94f005d5ca9c4d55ad2a1bf3a8d034a5fc6db187d91a4c42f3fdc9fc36', # HTML-Form-6.03.tar.gz + ], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + 'checksums': [ + '84ccbddf3894a88a2c2b6be68ff6ef8960037803bb36aa228b31944cfdf6deeb', # File-Copy-Recursive-0.38.tar.gz + ], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '83293737e803b43112830443fb5208ec5208a2e6ea512ed54ef8e4dd2b880827', # Number-Compare-0.03.tar.gz + ], + }), + ('IPC::Run', '0.96', { + 'source_tmpl': 'IPC-Run-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'bbd24ff027e1c232b3dc027562c9f4386da72b76991d30f9f3d4119e87cf4640', # IPC-Run-0.96.tar.gz + ], + }), + ('HTML::Entities::Interpolate', '1.10', { + 'source_tmpl': 'HTML-Entities-Interpolate-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'f15a9df92c282419f7010964aca1ada844ddfae7afc735cd2ba1bb20883e955c', # HTML-Entities-Interpolate-1.10.tgz + ], + }), + ('File::Remove', '1.57', { + 'source_tmpl': 'File-Remove-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + 'b3becd60165c38786d18285f770b8b06ebffe91797d8c00cc4730614382501ad', # File-Remove-1.57.tar.gz + ], + }), + ('YAML::Tiny', '1.70', { + 'source_tmpl': 'YAML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'bbce4b52b5eafdb04e3043975a08dbf394d00b7d2c958adb9d03d9f7e9291255', # YAML-Tiny-1.70.tar.gz + ], + }), + ('Module::Install', '1.18', { + 'source_tmpl': 'Module-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '29068ac33502cec959844c206516c09cc4a847cb57327d41015f605153ca645e', # Module-Install-1.18.tar.gz + ], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '06f82d076501701d78b8dc40b7688507bcc6c58b1beafd559e05bb0644df00a2', # Test-ClassAPI-1.06.tar.gz + ], + }), + ('Test::Most', '0.35', { + 'source_tmpl': 'Test-Most-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OV/OVID'], + 'checksums': [ + '9897a6f4d751598d2ed1047e01c1554b01d0f8c96c45e7e845229782bf6f657f', # Test-Most-0.35.tar.gz + ], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + 'cdb1e0cdf8380fb9b63b44c33ce5afc1068736d55ac5904bf0eaa1efc1c3cefc', # Class-Accessor-0.34.tar.gz + ], + }), + ('Test::Differences', '0.64', { + 'source_tmpl': 'Test-Differences-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + 'checksums': [ + '9f459dd9c2302a0a73e2f5528a0ce7d09d6766f073187ae2c69e603adf2eb276', # Test-Differences-0.64.tar.gz + ], + }), + ('HTTP::Tiny', '0.070', { + 'source_tmpl': 'HTTP-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + '74f385d1e96de887a4df5a222d93afdc7d81ea9ad721a56ff3d8449bb12f7733', # HTTP-Tiny-0.070.tar.gz + ], + }), + ('Package::DeprecationManager', '0.17', { + 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + # Package-DeprecationManager-0.17.tar.gz + '1d743ada482b5c9871d894966e87d4c20edc96931bb949fb2638b000ddd6684b', + ], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '68c1dac2187421f0eb7abf71452a06f190181b8fc4b28ededf5b90296fb943cc', # Digest-SHA1-2.13.tar.gz + ], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86', # TimeDate-2.30.tar.gz + ], + }), + ('version', '0.9918', { + 'source_tmpl': 'version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + 'checksums': [ + '54175c7ead4e2259c2fb2b83440b821e4287842067227e48fb899b5cae52237b', # version-0.9918.tar.gz + ], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'b4f3f63b80f680a421332d8851ddbe5a8e72fcaa74d5d1d98f3c8cc4a3ece293', # Sub-Uplevel-0.2800.tar.gz + ], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + 'patches': ['XML-Bare-0.53_icc.patch'], + 'checksums': [ + '865e198e98d904be1683ef5a53a4948f02dabdacde59fc554a082ffbcc5baefd', # XML-Bare-0.53.tar.gz + '7d005e44222a0ce130b8ba4912a869675c0aa9ce4d1b95caba06b683b69f2b20', # XML-Bare-0.53_icc.patch + ], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + 'ea844b9686c94d666d9d444321d764490b2cde2f985c4165b4c2c77665caedc4', # Dist-CheckConflicts-0.11.tar.gz + ], + }), + ('Sub::Name', '0.21', { + 'source_tmpl': 'Sub-Name-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'bd32e9dee07047c10ae474c9f17d458b6e9885a6db69474c7a494ccc34c27117', # Sub-Name-0.21.tar.gz + ], + }), + ('Time::Piece', '1.3201', { + 'source_tmpl': 'Time-Piece-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ES/ESAYM'], + 'checksums': [ + '81dbe694474a13d9683c392edd54bd77b6bd6d20b41433358487b51eb71e31bd', # Time-Piece-1.3201.tar.gz + ], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '3bc72c6d3ff144d73aefb90e9a78d33612d58cf1cd1631ecfb8985ba96da4a59', # Digest-HMAC-1.03.tar.gz + ], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '1c729c1ea63100e878405cda7d66f9adfd3ed4f1d6cacaca0ee9152df728e016', # HTTP-Negotiate-6.01.tar.gz + ], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '8f39901bc580bc3dce69e10415305e4435ff90264c63d29f707b4566460be962', # MIME-Lite-3.030.tar.gz + ], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'cd7209a6dfe0a3dc8caffe1aa2233b0e6effec7572d76a7a93feefffe636214e', # Crypt-Rijndael-1.13.tar.gz + ], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'dc49408964fd8b7963859c92e013f0b9f92f74be5a7c2a78e3996279827c10b3', # B-Lint-1.20.tar.gz + ], + }), + ('Canary::Stability', '2012', { + 'source_tmpl': 'Canary-Stability-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + 'checksums': [ + 'fd240b111d834dbae9630c59b42fae2145ca35addc1965ea311edf0d07817107', # Canary-Stability-2012.tar.gz + ], + }), + ('AnyEvent', '7.14', { + 'source_tmpl': 'AnyEvent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + 'checksums': [ + '539358d225bad34b4a64f5217f8c2a707b15e3a28c74120c9dd2270c7cca7d2a', # AnyEvent-7.14.tar.gz + ], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '76cb824a27b6b4e560409fcf6fd5b3bfbbd38b72f1f3d37ed0b54bd9c0baeade', # Object-Accessor-0.48.tar.gz + ], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '3cc7b2a3a7b74b45a059e013f7fd878078500ea4b7269036f84556b022078667', # Data-UUID-1.221.tar.gz + ], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'c1a1d3cedf4a579e3aad89c36f9878a8542b6656dbe71f1581420f49582d7efb', # Test-Pod-1.51.tar.gz + ], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + '1177027025ecb09ee64d9f9f255615c04db5e14f7536c344af632032eb887b0f', # AppConfig-1.71.tar.gz + ], + }), + ('Net::SMTP::SSL', '1.04', { + 'source_tmpl': 'Net-SMTP-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '7b29c45add19d3d5084b751f7ba89a8e40479a446ce21cfd9cc741e558332a00', # Net-SMTP-SSL-1.04.tar.gz + ], + }), + ('XML::Tiny', '2.07', { + 'source_tmpl': 'XML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + 'checksums': [ + 'ce39fcb53e0fe9f1cbcd86ddf152e1db48566266b70ec0769ef364eeabdd8941', # XML-Tiny-2.07.tar.gz + ], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + 'checksums': [ + 'adb17dac9e36cd011f5243881c9739417fd102fce760f8de4e9be4c7131108e2', # HTML-Tagset-3.20.tar.gz + ], + }), + ('HTML::Tree', '5.06', { + 'source_tmpl': 'HTML-Tree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KE/KENTNL'], + 'checksums': [ + '9c36eb19cbdf9a5906c858948ca51c35bd7561f52cc18c43281acbe57327536e', # HTML-Tree-5.06.tar.gz + ], + }), + ('Devel::GlobalDestruction', '0.14', { + 'source_tmpl': 'Devel-GlobalDestruction-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '34b8a5f29991311468fe6913cadaba75fd5d2b0b3ee3bb41fe5b53efab9154ab', # Devel-GlobalDestruction-0.14.tar.gz + ], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '46b502e7a288d559429891eeb5d979461dd3ecc6a5c491ead85d165b6e03a51e', # WWW-RobotRules-6.02.tar.gz + ], + }), + ('Expect', '1.35', { + 'source_tmpl': 'Expect-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JA/JACOBY'], + 'checksums': [ + '09d92761421decd495853103379165a99efbf452c720f30277602cf23679fd06', # Expect-1.35.tar.gz + ], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '91946c80d7f4aab0ca4bfedc3bbe0a75b37cab1a29bd7bca3b3b7456d417e9a6', # Term-UI-0.46.tar.gz + ], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + 'checksums': [ + '14c37bc1cbb3f3cdc7d6c13e0f27a859f14cdcfd5ea54a0467a88bc259b0b741', # Net-SNMP-v6.0.1.tar.gz + ], + }), + ('XML::SAX::Writer', '0.57', { + 'source_tmpl': 'XML-SAX-Writer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': [ + '3d61d07ef43b0126f5b4de4f415a256fa859fa88dc4fdabaad70b7be7c682cf0', # XML-SAX-Writer-0.57.tar.gz + ], + }), + ('Statistics::Descriptive', '3.0612', { + 'source_tmpl': 'Statistics-Descriptive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '772413148e5e00efb32f277c4254aa78b9112490a896208dcd0025813afdbf7a', # Statistics-Descriptive-3.0612.tar.gz + ], + }), + ('Class::Load', '0.24', { + 'source_tmpl': 'Class-Load-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '0bb983da46c146534fc77a556d6e40d925142f2eb43103534025ee545265ca36', # Class-Load-0.24.tar.gz + ], + }), + ('LWP::Simple', '6.26', { + 'source_tmpl': 'libwww-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + 'd0c5435275f8638ff36fff8f655ad2ccad1156e66cc47bfacfb9e44fc585b24f', # libwww-perl-6.26.tar.gz + ], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + '319601feec17fae344988a5ee91cfc6a0bcfe742af77dba254724c3268b2a60f', # Time-Piece-MySQL-0.06.tar.gz + ], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + '23d8c5c25768ef1dc0ce53b975796762df0d6e244445d06e48d794886c32d486', # Package-Stash-XS-0.28.tar.gz + ], + }), + ('GD::Graph', '1.54', { + 'source_tmpl': 'GDGraph-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + 'checksums': [ + 'b96f5c10b656c17d16ab65a1777c908297b028d3b6815f6d54b2337f006bfa4f', # GDGraph-1.54.tar.gz + ], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'd9f024c8e3637feccdebcf6479b6754b6c92f1209f567feaf0c23818af31ee3c', # Set-Array-0.30.tgz + ], + }), + ('boolean', '0.46', { + 'source_tmpl': 'boolean-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + 'checksums': [ + '95c088085c3e83bf680fe6ce16d8264ec26310490f7d1680e416ea7a118f156a', # boolean-0.46.tar.gz + ], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + 'checksums': [ + '82d659cb16461764fd44d11a9ce9e6a4f5e8767dc1069eb03467c6e55de257f3', # Number-Format-1.75.tar.gz + ], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': [ + '4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59', # Data-Stag-0.14.tar.gz + ], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '638a57658cb119af1fe5b15e73d47c2544dcfef84af0c6b1b2e97f08202b686c', # Test-NoWarnings-1.04.tar.gz + ], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + 'checksums': [ + '2db1ebb5837b4cb20051c0ee5b733b4453e3137df0a92306034c867621edd7e7', # Crypt-DES-2.07.tar.gz + ], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'cd13b7a0e91e8505a0ce4b25f40fab2c92bb28a99ef0d03da1001d95a32f0291', # Exporter-5.72.tar.gz + ], + }), + ('Class::Inspector', '1.32', { + 'source_tmpl': 'Class-Inspector-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + 'cefadc8b5338e43e570bc43f583e7c98d535c17b196bcf9084bb41d561cc0535', # Class-Inspector-1.32.tar.gz + ], + }), + ('Parse::RecDescent', '1.967015', { + 'source_tmpl': 'Parse-RecDescent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + 'checksums': [ + '1943336a4cb54f1788a733f0827c0c55db4310d5eae15e542639c9dd85656e37', # Parse-RecDescent-1.967015.tar.gz + ], + }), + ('Carp', '1.38', { + 'source_tmpl': 'Carp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'a5a9ce3cbb959dfefa8c2dd16552567199b286d39b0e55053ca247c038977101', # Carp-1.38.tar.gz + ], + }), + ('XML::XPath', '1.42', { + 'source_tmpl': 'XML-XPath-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + 'checksums': [ + '9e6ac67c2cead5f918a060b8b9ccdbdcaa6d610be8517bba42a96cd56748b512', # XML-XPath-1.42.tar.gz + ], + }), + ('Capture::Tiny', '0.46', { + 'source_tmpl': 'Capture-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + '5d7a6a830cf7f2b2960bf8b8afaac16a537ede64f3023827acea5bd24ca77015', # Capture-Tiny-0.46.tar.gz + ], + }), + ('JSON', '2.94', { + 'source_tmpl': 'JSON-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '12271b5cee49943bbdde430eef58f1fe64ba6561980b22c69585e08fc977dc6d', # JSON-2.94.tar.gz + ], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '543cb2e803ab913d44272c7da6a70bb62c19e467f3b12aaac4c9523259b083d6', # Sub-Exporter-0.987.tar.gz + ], + }), + ('Class::Load::XS', '0.10', { + 'source_tmpl': 'Class-Load-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '5bc22cf536ebfd2564c5bdaf42f0d8a4cee3d1930fc8b44b7d4a42038622add1', # Class-Load-XS-0.10.tar.gz + ], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + 'checksums': [ + 'cfb1768c24f55208e87405b17f537f0f303fa141891d0b22d509a941aa57e24e', # Set-IntSpan-Fast-1.15.tar.gz + ], + }), + ('Sub::Exporter::Progressive', '0.001013', { + 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + 'checksums': [ + # Sub-Exporter-Progressive-0.001013.tar.gz + 'd535b7954d64da1ac1305b1fadf98202769e3599376854b2ced90c382beac056', + ], + }), + ('Data::Dumper::Concise', '2.023', { + 'source_tmpl': 'Data-Dumper-Concise-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'a6c22f113caf31137590def1b7028a7e718eface3228272d0672c25e035d5853', # Data-Dumper-Concise-2.023.tar.gz + ], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '452995beeabf0e923e65fdc627a725dbb12c9e10c00d8018c16d10ba62757f1e', # File-Slurp-Tiny-0.004.tar.gz + ], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + 'checksums': [ + '30e84ac4b31d40b66293f7b1221331c5a50561a39d580d85004d9c1fff991751', # Algorithm-Diff-1.1903.tar.gz + ], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'be6a957f04a2feba9b305536b132deceba1f455db295b221a63e75567fadbcfc', # AnyData-0.12.tar.gz + ], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + 'checksums': [ + '5b80b7d5e709d34393bcba88971864a17b44a5bf0f9e4bcee383d029e7d2d5c3', # Text-Iconv-1.7.tar.gz + ], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '9967feceea15227e442ec818723163eb6d73b8947e31f16ab806f6e2391af14a', # Class-Data-Inheritable-0.08.tar.gz + ], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': [ + '057753f8f0568b53921f66a60a89c30092b73329bcc61a2c43339ab70c9792c8', # Text-Balanced-2.03.tar.gz + ], + }), + ('strictures', '2.000003', { + 'source_tmpl': 'strictures-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '27f8ea096a521e9754d36ea32889c2cda28346d04e3e399e7ea118d182dbaf22', # strictures-2.000003.tar.gz + ], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + 'checksums': [ + '31354975140fe6235ac130a109496491ad33dd42f9c62189e23f49f75f936d75', # Switch-2.17.tar.gz + ], + }), + ('File::Which', '1.21', { + 'source_tmpl': 'File-Which-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + '9def5f10316bfd944e56b7f8a2501be1d44c288325309462aa9345e340854bcc', # File-Which-1.21.tar.gz + ], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '579c617e303b9d874411c7b61b46b59d36f815718625074ae6832e7bb9db5104', # Email-Date-Format-1.005.tar.gz + ], + }), + ('Error', '0.17025', { + 'source_tmpl': 'Error-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '6c9f474ad3d4fe0cabff6b6be532cb1dd348245986d4a6b600ad921d5cfdefaf', # Error-0.17025.tar.gz + ], + }), + ('Mock::Quick', '1.111', { + 'source_tmpl': 'Mock-Quick-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'ff786008bf8c022064ececd3b7ed89c76b35e8d1eac6cf472a9f51771c1c9f2c', # Mock-Quick-1.111.tar.gz + ], + }), + ('Text::CSV', '1.95', { + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '7e0a11d9c1129a55b68a26aa4b37c894279df255aa63ec8341d514ab848dbf61', # Text-CSV-1.95.tar.gz + ], + }), + ('Test::Output', '1.031', { + 'source_tmpl': 'Test-Output-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + 'checksums': [ + 'f8b8f37185717872727d06f6c078fa77db794410faf2f6da4d37b0b7650f7ea4', # Test-Output-1.031.tar.gz + ], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '541354fe361c56850cb11261f6ca089a14573fa764792447444ff736ae626206', # Class-DBI-v3.0.17.tar.gz + ], + }), + ('List::AllUtils', '0.14', { + 'source_tmpl': 'List-AllUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'e45aa65927ae1975a000cc2fed14274627fa5e2bd09bab826a5f2c41d17ef6cd', # List-AllUtils-0.14.tar.gz + ], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + '94ce27a546cd57cb52e080a8f2533a7cc2350028388582485bd1039a37871f9c', # UNIVERSAL-moniker-0.08.tar.gz + ], + }), + ('Exception::Class', '1.43', { + 'source_tmpl': 'Exception-Class-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'ff3b4b3f706e84aaa87ab0dee5cec6bd7a8fc9f72cf76d115212541fa0a13760', # Exception-Class-1.43.tar.gz + ], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '66fb417f8ff8a5e5b7ea25606156e70e204861c59fa8c3831925b4dd3f155f8a', # File-CheckTree-4.42.tar.gz + ], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + 'checksums': [ + '409a8e0e4b1025c8e80f628f65a9778aa77ab285161406ca4a6c097b13656d0d', # Math-VecStat-0.08.tar.gz + ], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + 'checksums': [ + '15a840ea1c8a76cd3c865fbbf2fec33b03615c0daa50f9c800c54e0cf0659d46', # Pod-LaTeX-0.61.tar.gz + ], + }), + ('Eval::Closure', '0.14', { + 'source_tmpl': 'Eval-Closure-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + 'ea0944f2f5ec98d895bef6d503e6e4a376fea6383a6bc64c7670d46ff2218cad', # Eval-Closure-0.14.tar.gz + ], + }), + ('HTTP::Request', '6.13', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + 'f25f38428de851e5661e72f124476494852eb30812358b07f1c3a289f6f5eded', # HTTP-Message-6.13.tar.gz + ], + }), + ('XML::Twig', '3.52', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + 'checksums': [ + 'fef75826c24f2b877d0a0d2645212fc4fb9756ed4d2711614ac15c497e8680ad', # XML-Twig-3.52.tar.gz + ], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '2a3f4ad8442d9070780e58ef43722d19d1ee21a803bf7c8206877a10482de5a0', # IO-String-1.08.tar.gz + ], + }), + ('XML::Simple', '2.24', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '9a14819fd17c75fbb90adcec0446ceab356cab0ccaff870f2e1659205dc2424f', # XML-Simple-2.24.tar.gz + ], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '61e567a7679588887b7b86d427bc476ea6d77fffe7e0d17d640f89007d98ef0f', # Sub-Install-0.928.tar.gz + ], + }), + ('HTTP::Cookies', '6.04', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + '0cc7f079079dcad8293fea36875ef58dd1bfd75ce1a6c244cd73ed9523eb13d4', # HTTP-Cookies-6.04.tar.gz + ], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + 'checksums': [ + '1bbfbf7d1d4871e5a83bab2137e22d089078206815190eb1d5c1260a3499456f', # Pod-Plainer-1.04.tar.gz + ], + }), + ('Test::Exception::LessClever', '0.009', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + # Test-Exception-LessClever-0.009.tar.gz + '3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34', + ], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '18790b0cc5f0a51468495c3847b16738f785a2d460403595001e0b932e5db676', # LWP-MediaTypes-6.02.tar.gz + ], + }), + ('Scalar::Util', '1.48', { + 'source_tmpl': 'Scalar-List-Utils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + 'checksums': [ + '0e5318308789ba3625e053001da0a6c5218dc73e561a207d1b91131d06c0d09f', # Scalar-List-Utils-1.48.tar.gz + ], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + '0b3035ffdb909aa1f7ded6b608fa9d894421c82c097d51e7171170d67579a9cb', # Data-Section-Simple-0.07.tar.gz + ], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + '6b1e45acc561e0708e00a2fcf16e157cad8b8963d1bf73726f77dd809b8aebc4', # Class-Trigger-0.14.tar.gz + ], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '43fd867742701a3f9fcc7bd59838ab72c6490c0ebaf66901068ec6997514adc2', # HTTP-Daemon-6.01.tar.gz + ], + }), + ('File::HomeDir', '1.002', { + 'source_tmpl': 'File-HomeDir-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'eb4c0c85775138460cd4013d8117232f08e88381c95c6a93b3d11e969185c274', # File-HomeDir-1.002.tar.gz + ], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + 'e8b9941da0f9f0c9c01068401a5e81341f0e3707d1c754f8e11f42a7e629e333', # HTTP-Date-6.02.tar.gz + ], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '6614fa7518f094f853741b63c73f3627168c5d3aca89b1d02b1016dc32854e09', # Authen-SASL-2.16.tar.gz + ], + }), + ('Clone', '0.39', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + 'checksums': [ + 'acb046683e49d650b113634ecf57df000816a49e611b0fff70bf3f93568bfa2d', # Clone-0.39.tar.gz + ], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + 'checksums': [ + 'b2296fdcf9addc8e8fc39e15eb2c3d81145f6355258438bc783b12b02c41cb81', # Data-Types-0.09.tar.gz + ], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + 'bd9e77a3fb662b40b43b18d3280cd352edf9fad8d94283e518181cc1ce9f0567', # Import-Into-1.002005.tar.gz + ], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'bd725df481d7223ee787e154c116098b08a129f55e0763194b07ebea3dda33ec', # DateTime-Tiny-1.06.tar.gz + ], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '247f0d88e55076fd3f6c7bf3fd527989d62fcc1ef9bde9bf2ee11c280adcaeab', # DBD-AnyData-0.110.tar.gz + ], + }), + ('Text::Format', '0.60', { + 'source_tmpl': 'Text-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '664f313570604624ff9e1fc9b26b6d04e06897b3e4eac83089fc0905a692a2b8', # Text-Format-0.60.tar.gz + ], + }), + ('Devel::CheckCompiler', '0.07', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + 'checksums': [ + '768b7697b4b8d4d372c7507b65e9dd26aa4223f7100183bbb4d3af46d43869b5', # Devel-CheckCompiler-0.07.tar.gz + ], + }), + ('Log::Handler', '0.88', { + 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + 'checksums': [ + '45bf540ab2138ed3ff93afc205b0516dc75755b86acdcc5e75c41347833c293d', # Log-Handler-0.88.tar.gz + ], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '85e2f805bfc81cd738c294316b27a515397036f397a0ff1c6c8d754c38530306', # DBIx-ContextualFetch-1.03.tar.gz + ], + }), + ('Devel::StackTrace', '2.02', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'cbbd96db0ecf194ed140198090eaea0e327d9a378a4aa15f9a34b3138a91931f', # Devel-StackTrace-2.02.tar.gz + ], + }), + ('Term::ReadKey', '2.37', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + 'checksums': [ + '4a9383cf2e0e0194668fe2bd546e894ffad41d556b41d2f2f577c8db682db241', # TermReadKey-2.37.tar.gz + ], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + 'checksums': [ + '11b7549b13ec5d87cc695dd4c777cd02983dd5fe9866012877fb530f48b3dfd0', # Set-IntSpan-1.19.tar.gz + ], + }), + ('Moose', '2.2006', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'a4e00ab25cc41bebc5e7a11d71375fb5e64b56d5f91159afee225d698e06392b', # Moose-2.2006.tar.gz + ], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + 'f27733e8d89cf2ab621284c2584da90ab0cb743ba2295ee739fe51bf92561e37', # Algorithm-Dependency-1.110.tar.gz + ], + }), + ('Font::TTF', '1.06', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': [ + '4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293', # Font-TTF-1.06.tar.gz + ], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565', # IPC-Run3-0.048.tar.gz + ], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe', # File-Find-Rule-0.34.tar.gz + ], + }), + ('SQL::Statement', '1.412', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '65c870883379c11b53f19ead10aaac241ccc86a90bbab77f6376fe750720e5c8', # SQL-Statement-1.412.tar.gz + ], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': [ + 'ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643', # File-Slurp-9999.19.tar.gz + ], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + '06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c', # Package-Stash-0.37.tar.gz + ], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3', # Data-OptList-0.110.tar.gz + ], + }), + ('CPANPLUS', '0.9168', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'ea7b3278a688721729244de4d8efc57536be833458d93172c412bdc7c3c1ed02', # CPANPLUS-0.9168.tar.gz + ], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d', # IO-Tty-1.12.tar.gz + ], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed', # Text-Soundex-3.05.tar.gz + ], + }), + ('Lingua::EN::PluralToSingular', '0.19', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': [ + # Lingua-EN-PluralToSingular-0.19.tar.gz + 'c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e', + ], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': [ + 'b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7', # Want-0.29.tar.gz + ], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': [ + '7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77', # Cwd-Guard-0.05.tar.gz + ], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': [ + 'c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7', # Bundle-BioPerl-2.1.9.tar.gz + ], + }), + ('Mail::Util', '2.19', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': [ + 'c17ed702efea8eab56fe92961c07cd4980cee26ca6f13aff2688dc8af69c5e1a', # MailTools-2.19.tar.gz + ], + }), + ('Text::Template', '1.47', { + 'source_tmpl': 'Text-Template-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': [ + '50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc', # Text-Template-1.47.tar.gz + ], + }), + ('PDF::API2', '2.033', { + 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': [ + '9c0866ec1a3053f73afaca5f5cdbe6925903b4ce606f4bf4ac317731a69d27a0', # PDF-API2-2.033.tar.gz + ], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': [ + 'bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1', # Devel-CheckLib-1.11.tar.gz + ], + }), + ('SVG', '2.78', { + 'source_tmpl': 'SVG-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + 'checksums': [ + 'a665c1f18c0529f3da0f4b631976eb47e0f71f6d6784ef3f44d32fd76643d6bb', # SVG-2.78.tar.gz + ], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JE/JETTERO'], + 'checksums': [ + '6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb', # Statistics-Basic-1.6611.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From ecf7c6174eeb4d61e7ad4b2dfbbbe20b914e9678 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 11:44:42 +0200 Subject: [PATCH 476/845] bump version of ROOT dependency --- .../p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb index 945a05625b..2e3a670906 100644 --- a/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/p/PYTHIA/PYTHIA-8.226-intel-2017a-Python-2.7.13.eb @@ -19,7 +19,7 @@ checksums = ['8ff4281bce9d22b17f1ec88e9e9353e8172512d5ef96296ace9486860e9ed2c9'] dependencies = [ ('zlib', '1.2.11'), ('Python', '2.7.13'), - ('ROOT', '6.06.02', versionsuffix), + ('ROOT', '6.10.04', versionsuffix), ] configopts = '--cxx="$CXX" --cxx-common="$CXXFLAGS" ' -- GitLab From d952c96699388745ae6c54fb60eb12ebdae4607a Mon Sep 17 00:00:00 2001 From: iotaka Date: Fri, 1 Sep 2017 12:04:44 +0200 Subject: [PATCH 477/845] Update CGNS-3.3.1-foss-2016b.eb --- easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb index d1ef0ef3c7..3c201e828b 100644 --- a/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CGNS/CGNS-3.3.1-foss-2016b.eb @@ -12,7 +12,7 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://github.com/CGNS/CGNS/archive/'] sources = ['v%(version)s.tar.gz'] -checksums = ['65c55998270c3e125e28ec5c3742e15d'] +checksums = ['81093693b2e21a99c5640b82b267a495625b663d7b8125d5f1e9e7aaa1f8d469'] dependencies = [ ('HDF5', '1.10.0-patch1'), -- GitLab From 0fcce8882180470c9cb6374b462acadba494bf49 Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Fri, 1 Sep 2017 13:09:01 +0200 Subject: [PATCH 478/845] replace sanchk dirs with files in ParallelIO, space after all commas in PnetCDF and ParallelIO --- .../p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 6 +++--- .../easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index e7c22a9446..692c33dd47 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -21,14 +21,14 @@ dependencies = [ ] builddependencies = [ - ('CMake', '3.8.2', '', ('GCCcore', '6.3.0')), + ('CMake', '3.8.2'), ] configopts = "-DPIO_ENABLE_TIMING=OFF " sanity_check_paths = { - 'files': ['lib/piof.a'], - 'dirs': [('include','lib')], + 'files': ['lib/libpiof.a', 'include/pio.mod'], + 'dirs': [], } modextravars = { diff --git a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb index 6c3b0f7759..9badb348f2 100644 --- a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb @@ -14,7 +14,7 @@ checksums = ['8d7d4c9c7b39bb1cbbcf087e0d726551c50f0cc30d44aed3df63daf3772c9043'] sanity_check_paths = { 'files': ['bin/pnetcdf_version'], - 'dirs': [('include','lib','bin')], + 'dirs': ['include', 'lib'], } modextravars = { -- GitLab From 53bb24a3fa3b64db8b2e78009d4977bacb2dadf0 Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Fri, 1 Sep 2017 13:33:06 +0200 Subject: [PATCH 479/845] rm trailing whitespace in PnetCDF and ParallelIO --- .../p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 10 +++++----- .../easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb | 6 +++--- 2 files changed, 8 insertions(+), 8 deletions(-) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index 692c33dd47..fe293af317 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -16,19 +16,19 @@ checksums = ['052a03e8e3b5ac244dc53b397a9920af3066efffa216ea7f8e5e4ac73a8b8033'] separate_build_dir = True dependencies = [ - ('PnetCDF', '1.8.1'), - ('netCDF-Fortran', '4.4.4'), + ('PnetCDF', '1.8.1'), + ('netCDF-Fortran', '4.4.4'), ] builddependencies = [ - ('CMake', '3.8.2'), + ('CMake', '3.8.2'), ] configopts = "-DPIO_ENABLE_TIMING=OFF " sanity_check_paths = { - 'files': ['lib/libpiof.a', 'include/pio.mod'], - 'dirs': [], + 'files': ['lib/libpiof.a', 'include/pio.mod'], + 'dirs': [], } modextravars = { diff --git a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb index 9badb348f2..fcfc6e3551 100644 --- a/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PnetCDF/PnetCDF-1.8.1-intel-2017a.eb @@ -13,12 +13,12 @@ source_urls = ['http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/'] checksums = ['8d7d4c9c7b39bb1cbbcf087e0d726551c50f0cc30d44aed3df63daf3772c9043'] sanity_check_paths = { - 'files': ['bin/pnetcdf_version'], - 'dirs': ['include', 'lib'], + 'files': ['bin/pnetcdf_version'], + 'dirs': ['include', 'lib'], } modextravars = { - 'PNETCDF': '%(installdir)s', + 'PNETCDF': '%(installdir)s', } moduleclass = 'data' -- GitLab From e43f8a3d8d90fa3413af2cdf04932280c7a1610c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 17:18:11 +0200 Subject: [PATCH 480/845] rename sratoolkit 2.5.7 to SRA-Toolkit to match already existing easyconfigs --- .../SRA-Toolkit-2.5.7-centos_linux64.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/s/{sratoolkit/sratoolkit-2.5.7.eb => SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb} (97%) diff --git a/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb similarity index 97% rename from easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb rename to easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb index adcf73dd1b..acdc89643a 100644 --- a/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb @@ -7,7 +7,7 @@ easyblock = 'PackedBinary' -name = 'sratoolkit' +name = 'SRA-Toolkit' version = '2.5.7' homepage = 'http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software' -- GitLab From b01436fc06ce4054695fa2d45f30d90710c16830 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 17:23:14 +0200 Subject: [PATCH 481/845] {bio}[dummy] SRA-Toolkit 2.8.2-1 --- .../SRA-Toolkit-2.8.2-1-centos_linux64.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb new file mode 100644 index 0000000000..066acd56e7 --- /dev/null +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Author: Adam Huffman +# adam.huffman@crick.ac.uk +# The Francis Crick Institute +# Based on work by npklein + +easyblock = 'PackedBinary' + +name = 'SRA-Toolkit' +version = '2.8.2-1' + +homepage = 'http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software' +description = """The SRA Toolkit, and the source-code SRA System Development + Kit (SDK), will allow you to programmatically access data housed within SRA + and convert it from the SRA format""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/%(version)s/'] +sources = ['sratoolkit.%(version)s-centos_linux64.tar.gz'] +checksums = ['b053061aae7c6d00162fe0f514be4128a60365b4b2b5b36e7f4798b348b55cf5'] + +sanity_check_paths = { + 'files': ['bin/abi-load', 'bin/fastq-dump', 'bin/sff-load', 'bin/vdb-dump'], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 28d19f80f3ca372a9e4d3b13bb1acbd3a399778f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 1 Sep 2017 18:16:50 +0200 Subject: [PATCH 482/845] add missing versionsuffix & use it in sources spec --- .../s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb | 3 ++- .../s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb index acdc89643a..4a6fa7558e 100644 --- a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.7-centos_linux64.eb @@ -9,6 +9,7 @@ easyblock = 'PackedBinary' name = 'SRA-Toolkit' version = '2.5.7' +versionsuffix = '-centos_linux64' homepage = 'http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software' description = """The SRA Toolkit, and the source-code SRA System Development @@ -18,7 +19,7 @@ description = """The SRA Toolkit, and the source-code SRA System Development toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/%(version)s/'] -sources = ['sratoolkit.%(version)s-centos_linux64.tar.gz'] +sources = ['sratoolkit.%(version)s%(versionsuffix)s.tar.gz'] sanity_check_paths = { 'files': ['bin/abi-load', 'bin/fastq-dump', 'bin/sff-load', 'bin/vdb-dump'], diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb index 066acd56e7..07eca4b967 100644 --- a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.8.2-1-centos_linux64.eb @@ -9,6 +9,7 @@ easyblock = 'PackedBinary' name = 'SRA-Toolkit' version = '2.8.2-1' +versionsuffix = '-centos_linux64' homepage = 'http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software' description = """The SRA Toolkit, and the source-code SRA System Development @@ -18,7 +19,7 @@ description = """The SRA Toolkit, and the source-code SRA System Development toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/%(version)s/'] -sources = ['sratoolkit.%(version)s-centos_linux64.tar.gz'] +sources = ['sratoolkit.%(version)s%(versionsuffix)s.tar.gz'] checksums = ['b053061aae7c6d00162fe0f514be4128a60365b4b2b5b36e7f4798b348b55cf5'] sanity_check_paths = { -- GitLab From 4297b64d2e5c8717902f8890aef6978d009b0eee Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 4 Sep 2017 11:48:00 +0200 Subject: [PATCH 483/845] adding easyconfigs: Python-2.7.14-foss-2017b.eb, Python-2.7.14-intel-2017b.eb --- .../p/Python/Python-2.7.14-foss-2017b.eb | 234 ++++++++++++++++++ .../p/Python/Python-2.7.14-intel-2017b.eb | 234 ++++++++++++++++++ 2 files changed, 468 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb new file mode 100644 index 0000000000..b0ea1d804b --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb @@ -0,0 +1,234 @@ +name = 'Python' +version = '2.7.14' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + ('GMP', '6.1.2'), # required for pycrypto + ('libffi', '3.2.1'), # required for cryptography + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated August 30th 2017 +exts_list = [ + ('setuptools', '36.3.0', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'checksums': [ + 'e9fa391c1183b40fc6a1298bee02d554743f23c805a3b75dbb18def0f0755fb1', # setuptools-36.3.0.zip + ], + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + 'checksums': [ + '09f243e1a7b461f654c26a725fa373211bb7ff17a9300058b205c61658ca940d', # pip-9.0.1.tar.gz + ], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + 'checksums': [ + 'f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98', # nose-1.3.7.tar.gz + ], + }), + ('numpy', '1.13.1', { + 'patches': ['numpy-1.12.0-mkl.patch'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'checksums': [ + 'c9b0283776085cb2804efff73e9955ca279ba4edafd58d3ead70b61d209c4fbb', # numpy-1.13.1.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch + ], + }), + ('scipy', '0.19.1', { + 'source_tmpl': '%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'checksums': [ + 'a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6', # scipy-0.19.1.tar.gz + ], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + 'checksums': [ + '3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3', # blist-1.3.6.tar.gz + ], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + 'checksums': [ + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz + ], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'checksums': [ + '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz + ], + }), + ('pbr', '3.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + 'checksums': [ + '05f61c71aaefc02d8e37c0a3eeb9815ff526ea28b3b76324769e6158d7f95be1', # pbr-3.1.1.tar.gz + ], + }), + ('Cython', '0.26.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': [ + 'c2e63c4794161135adafa8aa4a855d6068073f421c83ffacc39369497a189dd5', # Cython-0.26.1.tar.gz + ], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'checksums': [ + '105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a', # six-1.10.0.tar.gz + ], + }), + ('dateutil', '2.6.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'checksums': [ + '891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca', # python-dateutil-2.6.1.tar.gz + ], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'checksums': [ + 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz + ], + }), + ('decorator', '4.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + 'checksums': [ + '7cb64d38cb8002971710c8899fbdfb859a23a364b7c99dab19d1f719c2ba16b5', # decorator-4.1.2.tar.gz + ], + }), + ('arff', '2.1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + 'checksums': [ + 'b8ef2c64ae5318f6884dc0e20b8491b0b1c96151a40077a479e0f57257cab817', # liac-arff-2.1.1.tar.gz + ], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + 'checksums': [ + 'f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c', # pycrypto-2.6.1.tar.gz + ], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + 'checksums': [ + '64cf1ee26d1cde3c73c6d7d107f835fed7c6a2904aef9eac223d57ad800c43fa', # ecdsa-0.13.tar.gz + ], + }), + ('cryptography', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + 'checksums': [ + 'd04bb2425086c3fe86f7bc48915290b13e798497839fbb18ab7f6dffcf98cc3a', # cryptography-2.0.3.tar.gz + ], + }), + ('paramiko', '2.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + 'checksums': [ + 'ff94ae65379914ec3c960de731381f49092057b6dd1d24d18842ead5a2eb2277', # paramiko-2.2.1.tar.gz + ], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'checksums': [ + '0832bcf47acd283788593e7a0f542407bd9550a55a8a8435214a1960e04bcb04', # pyparsing-2.2.0.tar.gz + ], + }), + ('netifaces', '0.10.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + 'checksums': [ + '0c4da523f36d36f1ef92ee183f2512f3ceb9a9d2a45f7d19cda5a42c6689ebe0', # netifaces-0.10.6.tar.gz + ], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + 'checksums': [ + '38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd', # netaddr-0.7.19.tar.gz + ], + }), + ('funcsigs', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], + 'checksums': [ + 'a7bb0f2cf3a3fd1ab2732cb49eba4252c2af4240442415b4abce3b87022a8f50', # funcsigs-1.0.2.tar.gz + ], + }), + ('mock', '2.0.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + 'checksums': [ + 'b158b6df76edd239b8208d481dc46b6afd45a846b7812ff0ce58971cf5bc8bba', # mock-2.0.0.tar.gz + ], + }), + ('pytz', '2017.2', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + 'checksums': [ + 'f5c056e8f62d45ba8215e5cb8f50dfccb198b4b9fbea8500674f3443e4689589', # pytz-2017.2.zip + ], + }), + ('pandas', '0.20.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + 'checksums': [ + 'a777e07633d83d546c55706420179551c8e01075b53c497dcf8ae4036766bc66', # pandas-0.20.3.tar.gz + ], + }), + ('enum34', '1.1.6', { + 'modulename': 'enum', + 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], + 'checksums': [ + '8ad8c4783bf61ded74527bffb48ed9b54166685e4230386a9ed9b1279e2df5b1', # enum34-1.1.6.tar.gz + ], + }), + ('bitstring', '3.1.5', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], + 'checksums': [ + 'c163a86fcef377c314690051885d86b47419e3e1770990c212e16723c1c08faa', # bitstring-3.1.5.zip + ], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + 'checksums': [ + '02f8102c2436bb03b3ee6dede1919d1dac8a427541652e5ec95171ec8adbc93a', # virtualenv-15.1.0.tar.gz + ], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + 'checksums': [ + '49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491', # docopt-0.6.2.tar.gz + ], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + 'checksums': [ + '7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085', # joblib-0.11.tar.gz + ], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb new file mode 100644 index 0000000000..51feaba802 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb @@ -0,0 +1,234 @@ +name = 'Python' +version = '2.7.14' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + ('GMP', '6.1.2'), # required for pycrypto + ('libffi', '3.2.1'), # required for cryptography + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated August 30th 2017 +exts_list = [ + ('setuptools', '36.3.0', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'checksums': [ + 'e9fa391c1183b40fc6a1298bee02d554743f23c805a3b75dbb18def0f0755fb1', # setuptools-36.3.0.zip + ], + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + 'checksums': [ + '09f243e1a7b461f654c26a725fa373211bb7ff17a9300058b205c61658ca940d', # pip-9.0.1.tar.gz + ], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + 'checksums': [ + 'f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98', # nose-1.3.7.tar.gz + ], + }), + ('numpy', '1.13.1', { + 'patches': ['numpy-1.12.0-mkl.patch'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'checksums': [ + 'c9b0283776085cb2804efff73e9955ca279ba4edafd58d3ead70b61d209c4fbb', # numpy-1.13.1.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch + ], + }), + ('scipy', '0.19.1', { + 'source_tmpl': '%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'checksums': [ + 'a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6', # scipy-0.19.1.tar.gz + ], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + 'checksums': [ + '3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3', # blist-1.3.6.tar.gz + ], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + 'checksums': [ + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz + ], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'checksums': [ + '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz + ], + }), + ('pbr', '3.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + 'checksums': [ + '05f61c71aaefc02d8e37c0a3eeb9815ff526ea28b3b76324769e6158d7f95be1', # pbr-3.1.1.tar.gz + ], + }), + ('Cython', '0.26.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': [ + 'c2e63c4794161135adafa8aa4a855d6068073f421c83ffacc39369497a189dd5', # Cython-0.26.1.tar.gz + ], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'checksums': [ + '105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a', # six-1.10.0.tar.gz + ], + }), + ('dateutil', '2.6.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'checksums': [ + '891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca', # python-dateutil-2.6.1.tar.gz + ], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'checksums': [ + 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz + ], + }), + ('decorator', '4.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + 'checksums': [ + '7cb64d38cb8002971710c8899fbdfb859a23a364b7c99dab19d1f719c2ba16b5', # decorator-4.1.2.tar.gz + ], + }), + ('arff', '2.1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + 'checksums': [ + 'b8ef2c64ae5318f6884dc0e20b8491b0b1c96151a40077a479e0f57257cab817', # liac-arff-2.1.1.tar.gz + ], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + 'checksums': [ + 'f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c', # pycrypto-2.6.1.tar.gz + ], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + 'checksums': [ + '64cf1ee26d1cde3c73c6d7d107f835fed7c6a2904aef9eac223d57ad800c43fa', # ecdsa-0.13.tar.gz + ], + }), + ('cryptography', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + 'checksums': [ + 'd04bb2425086c3fe86f7bc48915290b13e798497839fbb18ab7f6dffcf98cc3a', # cryptography-2.0.3.tar.gz + ], + }), + ('paramiko', '2.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + 'checksums': [ + 'ff94ae65379914ec3c960de731381f49092057b6dd1d24d18842ead5a2eb2277', # paramiko-2.2.1.tar.gz + ], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'checksums': [ + '0832bcf47acd283788593e7a0f542407bd9550a55a8a8435214a1960e04bcb04', # pyparsing-2.2.0.tar.gz + ], + }), + ('netifaces', '0.10.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + 'checksums': [ + '0c4da523f36d36f1ef92ee183f2512f3ceb9a9d2a45f7d19cda5a42c6689ebe0', # netifaces-0.10.6.tar.gz + ], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + 'checksums': [ + '38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd', # netaddr-0.7.19.tar.gz + ], + }), + ('funcsigs', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], + 'checksums': [ + 'a7bb0f2cf3a3fd1ab2732cb49eba4252c2af4240442415b4abce3b87022a8f50', # funcsigs-1.0.2.tar.gz + ], + }), + ('mock', '2.0.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + 'checksums': [ + 'b158b6df76edd239b8208d481dc46b6afd45a846b7812ff0ce58971cf5bc8bba', # mock-2.0.0.tar.gz + ], + }), + ('pytz', '2017.2', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + 'checksums': [ + 'f5c056e8f62d45ba8215e5cb8f50dfccb198b4b9fbea8500674f3443e4689589', # pytz-2017.2.zip + ], + }), + ('pandas', '0.20.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + 'checksums': [ + 'a777e07633d83d546c55706420179551c8e01075b53c497dcf8ae4036766bc66', # pandas-0.20.3.tar.gz + ], + }), + ('enum34', '1.1.6', { + 'modulename': 'enum', + 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], + 'checksums': [ + '8ad8c4783bf61ded74527bffb48ed9b54166685e4230386a9ed9b1279e2df5b1', # enum34-1.1.6.tar.gz + ], + }), + ('bitstring', '3.1.5', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], + 'checksums': [ + 'c163a86fcef377c314690051885d86b47419e3e1770990c212e16723c1c08faa', # bitstring-3.1.5.zip + ], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + 'checksums': [ + '02f8102c2436bb03b3ee6dede1919d1dac8a427541652e5ec95171ec8adbc93a', # virtualenv-15.1.0.tar.gz + ], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + 'checksums': [ + '49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491', # docopt-0.6.2.tar.gz + ], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + 'checksums': [ + '7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085', # joblib-0.11.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From 9df8c5cdaf58c095de59d2d1e6a6b3a453724cb7 Mon Sep 17 00:00:00 2001 From: Martin Rosgaard Date: Mon, 4 Sep 2017 13:33:53 +0200 Subject: [PATCH 484/845] trying preconfig opts for ParallelIO --- .../easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb index fe293af317..b20a236c79 100644 --- a/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParallelIO/ParallelIO-2.2.2a-intel-2017a.eb @@ -24,6 +24,7 @@ builddependencies = [ ('CMake', '3.8.2'), ] +preconfigopts = "NETCDF_C=$EBROOTNETCDF NETCDF_F=$EBROOTNETCDFMINFORTRAN " configopts = "-DPIO_ENABLE_TIMING=OFF " sanity_check_paths = { -- GitLab From 0ad69a6abfd40e36d3877f1f7d84333523ed6c25 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 4 Sep 2017 18:24:41 +0200 Subject: [PATCH 485/845] adding easyconfigs: GATK-3.8-0-Java-1.8.0_144.eb --- .../g/GATK/GATK-3.8-0-Java-1.8.0_144.eb | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/g/GATK/GATK-3.8-0-Java-1.8.0_144.eb diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.8-0-Java-1.8.0_144.eb b/easybuild/easyconfigs/g/GATK/GATK-3.8-0-Java-1.8.0_144.eb new file mode 100644 index 0000000000..443c272e9d --- /dev/null +++ b/easybuild/easyconfigs/g/GATK/GATK-3.8-0-Java-1.8.0_144.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Authors:: George Tsouloupas , Fotis Georgatos , +# Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# Modified by: Adam Huffman +# The Francis Crick Institute +## + +easyblock = 'Tarball' + +name = 'GATK' +version = '3.8-0' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://www.broadinstitute.org/gatk/' +description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute + to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, + with a primary focus on variant discovery and genotyping as well as strong emphasis on + data quality assurance. Its robust architecture, powerful processing engine and + high-performance computing features make it capable of taking on projects of any size.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download manually from http://www.broadinstitute.org/gatk/download +sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] +checksums = ['d1017b851f0cc6442b75ac88dd438e58203fa3ef1d1c38eb280071ae3803b9f1'] + +dependencies = [('Java', '1.8.0_144')] + +modloadmsg = "To execute GATK run: java -jar $EBROOTGATK/GenomeAnalysisTK.jar\n" + +sanity_check_paths = { + 'files': ["GenomeAnalysisTK.jar"], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From d1fec54c9fec6c5289348095cb213712d06eca0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 5 Sep 2017 09:12:36 +0200 Subject: [PATCH 486/845] adding easyconfigs: parallel-20170822-intel-2017a.eb --- .../parallel/parallel-20170822-intel-2017a.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/p/parallel/parallel-20170822-intel-2017a.eb diff --git a/easybuild/easyconfigs/p/parallel/parallel-20170822-intel-2017a.eb b/easybuild/easyconfigs/p/parallel/parallel-20170822-intel-2017a.eb new file mode 100644 index 0000000000..35d523f42b --- /dev/null +++ b/easybuild/easyconfigs/p/parallel/parallel-20170822-intel-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'parallel' +version = '20170822' + +homepage = 'http://savannah.gnu.org/projects/parallel/' +description = """parallel: Build and execute shell commands in parallel""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['8949bfa3057e194119a85a8cba2c8e0bdd46b5f5851eda583d2386b95c039148'] + +dependencies = [ + ('Perl', '5.24.1'), +] + +sanity_check_paths = { + 'files': ['bin/parallel'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 60bf55591313aa5d6aae4317ac167aa3d9d02707 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 Sep 2017 13:53:45 +0200 Subject: [PATCH 487/845] Quorum/1.1.1 for intel/2017a --- .../q/Quorum/Quorum-1.1.1-intel-2017a.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb diff --git a/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb b/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb new file mode 100644 index 0000000000..6842eb5e85 --- /dev/null +++ b/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Quorum' +version = '1.1.1' + +homepage = 'http://www.genome.umd.edu/quorum.html' +description = """QuorUM is an error corrector for Illumina reads""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://github.com/gmarcais/Quorum/releases/download/v%(version)s'] +checksums = ['45d099835eaad43cf915e118e9cb6423411d68c7f35a8145bc725dca366c82b5'] + +dependencies = [('Jellyfish', '2.2.6')] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['merge_mate_pairs', 'quorum', 'quorum_create_database', + 'quorum_error_correct_reads', 'split_mate_pairs']], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 2ac11ddd7dcdad2ac5c3b56ae6ebad1f0b36bd3c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 Sep 2017 13:56:29 +0200 Subject: [PATCH 488/845] Added CVXOPT/1.1.9 --- .../c/CVXOPT/CVXOPT-1.1.9-fix-setup-py.patch | 130 ++++++++++++++++++ .../CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb | 38 +++++ 2 files changed, 168 insertions(+) create mode 100644 easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-fix-setup-py.patch create mode 100644 easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-fix-setup-py.patch b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-fix-setup-py.patch new file mode 100644 index 0000000000..5a36e6e338 --- /dev/null +++ b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-fix-setup-py.patch @@ -0,0 +1,130 @@ +# Patches the setup.py to use EB settings for BLAS/LAPACK, FFTW, etc +# wpoely86@gmail.com +diff -ur cvxopt-1.1.9.orig/setup.py cvxopt-1.1.9/setup.py +--- cvxopt-1.1.9.orig/setup.py 2016-11-30 08:35:21.000000000 +0100 ++++ cvxopt-1.1.9/setup.py 2017-09-04 15:11:41.855020186 +0200 +@@ -80,10 +80,12 @@ + LAPACK_LIB = os.environ.get("CVXOPT_LAPACK_LIB",LAPACK_LIB) + BLAS_LIB_DIR = os.environ.get("CVXOPT_BLAS_LIB_DIR",BLAS_LIB_DIR) + BLAS_EXTRA_LINK_ARGS = os.environ.get("CVXOPT_BLAS_EXTRA_LINK_ARGS",BLAS_EXTRA_LINK_ARGS) ++FFTW_EXTRA_LINK_ARGS = os.environ.get("CVXOPT_FFTW_EXTRA_LINK_ARGS","") + DATA_FILES = os.environ.get("CVXOPT_DATA_FILES",[]) + if type(BLAS_LIB) is str: BLAS_LIB = BLAS_LIB.strip().split(';') + if type(LAPACK_LIB) is str: LAPACK_LIB = LAPACK_LIB.strip().split(';') +-if type(BLAS_EXTRA_LINK_ARGS) is str: BLAS_EXTRA_LINK_ARGS = BLAS_EXTRA_LINK_ARGS.strip().split(';') ++if type(BLAS_EXTRA_LINK_ARGS) is str: BLAS_EXTRA_LINK_ARGS = BLAS_EXTRA_LINK_ARGS.strip().split(' ') ++if type(FFTW_EXTRA_LINK_ARGS) is str: FFTW_EXTRA_LINK_ARGS = FFTW_EXTRA_LINK_ARGS.strip().split(' ') + if type(DATA_FILES) is str: DATA_FILES = DATA_FILES.strip().split(';') + BUILD_GSL = int(os.environ.get("CVXOPT_BUILD_GSL",BUILD_GSL)) + GSL_LIB_DIR = os.environ.get("CVXOPT_GSL_LIB_DIR",GSL_LIB_DIR) +@@ -112,7 +114,7 @@ + # optional modules + + if BUILD_GSL: +- gsl = Extension('gsl', libraries = ['m', 'gsl'] + BLAS_LIB, ++ gsl = Extension('gsl', libraries = ['m', 'gsl'], + include_dirs = [ GSL_INC_DIR ], + library_dirs = [ GSL_LIB_DIR, BLAS_LIB_DIR ], + extra_link_args = BLAS_EXTRA_LINK_ARGS, +@@ -120,10 +122,10 @@ + extmods += [gsl]; + + if BUILD_FFTW: +- fftw = Extension('fftw', libraries = ['fftw3'] + BLAS_LIB, ++ fftw = Extension('fftw', + include_dirs = [ FFTW_INC_DIR ], + library_dirs = [ FFTW_LIB_DIR, BLAS_LIB_DIR ], +- extra_link_args = BLAS_EXTRA_LINK_ARGS, ++ extra_link_args = BLAS_EXTRA_LINK_ARGS + FFTW_EXTRA_LINK_ARGS, + sources = ['src/C/fftw.c'] ) + extmods += [fftw]; + +@@ -135,7 +137,7 @@ + extmods += [glpk]; + + if BUILD_DSDP: +- dsdp = Extension('dsdp', libraries = ['dsdp'] + LAPACK_LIB + BLAS_LIB, ++ dsdp = Extension('dsdp', libraries = ['dsdp'], + include_dirs = [ DSDP_INC_DIR ], + library_dirs = [ DSDP_LIB_DIR, BLAS_LIB_DIR ], + extra_link_args = BLAS_EXTRA_LINK_ARGS, +@@ -144,19 +146,19 @@ + + # Required modules + +-base = Extension('base', libraries = ['m'] + LAPACK_LIB + BLAS_LIB, ++base = Extension('base', libraries = ['m'], + library_dirs = [ BLAS_LIB_DIR ], + define_macros = MACROS, + extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = ['src/C/base.c','src/C/dense.c','src/C/sparse.c']) + +-blas = Extension('blas', libraries = BLAS_LIB, ++blas = Extension('blas', + library_dirs = [ BLAS_LIB_DIR ], + define_macros = MACROS, + extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = ['src/C/blas.c'] ) + +-lapack = Extension('lapack', libraries = LAPACK_LIB + BLAS_LIB, ++lapack = Extension('lapack', + library_dirs = [ BLAS_LIB_DIR ], + define_macros = MACROS, + extra_link_args = BLAS_EXTRA_LINK_ARGS, +@@ -164,9 +166,10 @@ + + if not SUITESPARSE_SRC_DIR: + umfpack = Extension('umfpack', +- libraries = ['umfpack','cholmod','amd','colamd','suitesparseconfig'] + LAPACK_LIB + BLAS_LIB + RT_LIB, ++ libraries = ['umfpack','cholmod','amd','colamd','suitesparseconfig'] + RT_LIB, + include_dirs = [SUITESPARSE_INC_DIR], + library_dirs = [SUITESPARSE_LIB_DIR, BLAS_LIB_DIR], ++ extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = ['src/C/umfpack.c']) + else: + umfpack = Extension('umfpack', +@@ -177,7 +180,6 @@ + SUITESPARSE_SRC_DIR + '/SuiteSparse_config' ], + library_dirs = [ BLAS_LIB_DIR ], + define_macros = MACROS + [('NTIMER', '1'), ('NCHOLMOD', '1')], +- libraries = LAPACK_LIB + BLAS_LIB, + extra_compile_args = ['-Wno-unknown-pragmas'], + extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = [ 'src/C/umfpack.c', +@@ -190,14 +192,14 @@ + + if not SUITESPARSE_SRC_DIR: + cholmod = Extension('cholmod', +- libraries = ['cholmod','colamd','amd','suitesparseconfig'] + LAPACK_LIB + BLAS_LIB + RT_LIB, ++ libraries = ['cholmod','colamd','amd','suitesparseconfig'] + RT_LIB, + include_dirs = [SUITESPARSE_INC_DIR], + library_dirs = [SUITESPARSE_LIB_DIR, BLAS_LIB_DIR], ++ extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = [ 'src/C/cholmod.c' ]) + else: + cholmod = Extension('cholmod', + library_dirs = [ BLAS_LIB_DIR ], +- libraries = LAPACK_LIB + BLAS_LIB, + include_dirs = [ SUITESPARSE_SRC_DIR + '/CHOLMOD/Include', + SUITESPARSE_SRC_DIR + '/COLAMD', + SUITESPARSE_SRC_DIR + '/AMD/Include', +@@ -219,17 +221,18 @@ + libraries = ['amd','suitesparseconfig'] + RT_LIB, + include_dirs = [SUITESPARSE_INC_DIR], + library_dirs = [SUITESPARSE_LIB_DIR], ++ extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = ['src/C/amd.c']) + else: + amd = Extension('amd', + include_dirs = [SUITESPARSE_SRC_DIR + '/AMD/Include', + SUITESPARSE_SRC_DIR + '/SuiteSparse_config' ], + define_macros = MACROS + [('NTIMER', '1')], ++ extra_link_args = BLAS_EXTRA_LINK_ARGS, + sources = [ 'src/C/amd.c', SUITESPARSE_SRC_DIR + '/SuiteSparse_config/SuiteSparse_config.c'] + + glob(SUITESPARSE_SRC_DIR + '/AMD/Source/*.c') ) + + misc_solvers = Extension('misc_solvers', +- libraries = LAPACK_LIB + BLAS_LIB, + library_dirs = [ BLAS_LIB_DIR ], + define_macros = MACROS, + extra_link_args = BLAS_EXTRA_LINK_ARGS, diff --git a/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..673c7c6791 --- /dev/null +++ b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,38 @@ +easyblock = "PythonPackage" + +name = 'CVXOPT' +version = '1.1.9' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://cvxopt.org' +description = """CVXOPT is a free software package for convex optimization based on the Python programming language. + Its main purpose is to make the development of software for convex optimization applications straightforward by + building on Python's extensive standard library and on the strengths of Python as a high-level programming language. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/cvxopt/cvxopt/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['09997fec809179c9bb9fe8cdd202ad6ecb675f890658219022f492e0797122ee'] + +patches = ['%(name)s-%(version)s-fix-setup-py.patch'] + +dependencies = [ + ('Python', '2.7.13'), + ('SuiteSparse', '4.5.5', '-METIS-5.1.0'), + ('GSL', '2.3'), +] + +prebuildopts = 'CVXOPT_BUILD_FFTW=1 CVXOPT_BUILD_GSL=1 CVXOPT_BLAS_EXTRA_LINK_ARGS="$LIBLAPACK" ' +prebuildopts += 'CVXOPT_FFTW_EXTRA_LINK_ARGS="$LIBFFT" CVXOPT_SUITESPARSE_SRC_DIR=$EBROOTSUITESPARSE' + +installopts = ' && nosetests' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' -- GitLab From 74717e269d6faf0bcea66712897bd1f6576b7b1e Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 Sep 2017 14:19:17 +0200 Subject: [PATCH 489/845] Added Shannon for intel/2017a --- .../s/Shannon/Shannon-30a861-intel-2017a.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a.eb diff --git a/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a.eb b/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a.eb new file mode 100644 index 0000000000..a1587a74b6 --- /dev/null +++ b/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a.eb @@ -0,0 +1,31 @@ +easyblock = 'Tarball' + +name = 'Shannon' +version = '30a861' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://sreeramkannan.github.io/Shannon/' +description = """Shannon is a program for assembling transcripts from RNA-Seq data""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['%(version)s.tar.gz'] +source_urls = ['https://github.com/sreeramkannan/Shannon/archive/'] + +dependencies = [ + ('Python', '2.7.13'), + ('CVXOPT', '1.1.9', versionsuffix), + ('Jellyfish', '2.2.6'), + ('Quorum', '1.1.1'), +] + +postinstallcmds = ["sed -i '1 i#!/usr/bin/env python' %(installdir)s/*.py", "chmod +x %(installdir)s/*.py"] + +modextrapaths = {'PATH': ['']} + +sanity_check_paths = { + 'files': [], + 'dirs': ["."] +} + +moduleclass = 'bio' -- GitLab From 30031781a08d750e5cc8dc34ae9d27bd8f0cce67 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 Sep 2017 15:35:19 +0200 Subject: [PATCH 490/845] Fix errors --- easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb | 2 +- ...tel-2017a.eb => Shannon-30a861-intel-2017a-Python-2.7.13.eb} | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/s/Shannon/{Shannon-30a861-intel-2017a.eb => Shannon-30a861-intel-2017a-Python-2.7.13.eb} (100%) diff --git a/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb b/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb index 6842eb5e85..0382266af3 100644 --- a/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb +++ b/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb @@ -16,7 +16,7 @@ dependencies = [('Jellyfish', '2.2.6')] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['merge_mate_pairs', 'quorum', 'quorum_create_database', - 'quorum_error_correct_reads', 'split_mate_pairs']], + 'quorum_error_correct_reads', 'split_mate_pairs']], 'dirs': [] } diff --git a/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a.eb b/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb similarity index 100% rename from easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a.eb rename to easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb -- GitLab From fc16b0d70eda5c8c9681a7677381ace962506106 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 Sep 2017 16:40:55 +0200 Subject: [PATCH 491/845] Renamed to be consistent with github tagging --- ...04-intel-2017a.eb => SOAPdenovo-Trans-1.0.4-intel-2017a.eb} | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/s/SOAPdenovo-Trans/{SOAPdenovo-Trans-1.04-intel-2017a.eb => SOAPdenovo-Trans-1.0.4-intel-2017a.eb} (89%) diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb similarity index 89% rename from easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb rename to easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb index 23f71d7d40..e2e16d74fd 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.04-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb @@ -1,7 +1,7 @@ easyblock = 'MakeCp' name = 'SOAPdenovo-Trans' -version = '1.04' +version = '1.0.4' homepage = 'http://soap.genomics.org.cn/SOAPdenovo-Trans.html' description = """SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} sources = ['%(version)s.tar.gz'] source_urls = ['https://github.com/aquaskyline/SOAPdenovo-Trans/archive/'] +checksums = ['378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795'] patches = ['fix-makefiles-%(version)s.patch'] -- GitLab From 9cf6849fa55a93304b046bdfb64424681126f3f4 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 Sep 2017 17:05:29 +0200 Subject: [PATCH 492/845] Rename patch too --- .../{fix-makefiles-1.04.patch => fix-makefiles-1.0.4.patch} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/s/SOAPdenovo-Trans/{fix-makefiles-1.04.patch => fix-makefiles-1.0.4.patch} (100%) diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.04.patch b/easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.0.4.patch similarity index 100% rename from easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.04.patch rename to easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.0.4.patch -- GitLab From 93a83bf8c9e7fdc029f6ba1dc6a6d7cff4f60d89 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 5 Sep 2017 21:49:52 +0200 Subject: [PATCH 493/845] adding easyconfigs: PHAST-1.4-intel-2017a.eb, CLAPACK-3.2.1-intel-2017a.eb --- .../c/CLAPACK/CLAPACK-3.2.1-intel-2017a.eb | 29 ++++++++++++++++ .../p/PHAST/PHAST-1.4-intel-2017a.eb | 34 +++++++++++++++++++ 2 files changed, 63 insertions(+) create mode 100644 easybuild/easyconfigs/c/CLAPACK/CLAPACK-3.2.1-intel-2017a.eb create mode 100644 easybuild/easyconfigs/p/PHAST/PHAST-1.4-intel-2017a.eb diff --git a/easybuild/easyconfigs/c/CLAPACK/CLAPACK-3.2.1-intel-2017a.eb b/easybuild/easyconfigs/c/CLAPACK/CLAPACK-3.2.1-intel-2017a.eb new file mode 100644 index 0000000000..a52bcdd9d4 --- /dev/null +++ b/easybuild/easyconfigs/c/CLAPACK/CLAPACK-3.2.1-intel-2017a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'CLAPACK' +version = '3.2.1' + +homepage = 'http://www.netlib.org/clapack' +description = "C version of LAPACK" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.netlib.org/clapack/'] +sources = [SOURCELOWER_TGZ] +checksums = ['6dc4c382164beec8aaed8fd2acc36ad24232c406eda6db462bd4c41d5e455fac'] + +unpack_options = '--strip-components=1' +buildininstalldir = True +skipsteps = ['configure', 'install'] + +prebuildopts = 'cp make.inc.example make.inc && ' +buildopts = 'CC="$CC" LOADER="$CC" ' + +parallel = 1 + +sanity_check_paths = { + 'files': ['lapack_LINUX.a', 'tmglib_LINUX.a'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/PHAST/PHAST-1.4-intel-2017a.eb b/easybuild/easyconfigs/p/PHAST/PHAST-1.4-intel-2017a.eb new file mode 100644 index 0000000000..85d3553135 --- /dev/null +++ b/easybuild/easyconfigs/p/PHAST/PHAST-1.4-intel-2017a.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'PHAST' +version = '1.4' + +homepage = 'http://compgen.cshl.edu/phast/' +description = "PHAST is a freely available software package for comparative and evolutionary genomics." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/CshlSiepelLab/phast/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['287c77599c51256a3adbd62ed217cb6d6a547fcec2c29262e9d61fa32ed92b99'] + +dependencies = [ + ('CLAPACK', '3.2.1'), + ('PCRE', '8.41'), +] + +skipsteps = ['configure'] + +start_dir = 'src' + +prebuildopts = 'CPATH=$EBROOTCLAPACK/F2CLIBS/libf2c:$EBROOTCLAPACK/INCLUDE:$CPATH ' +buildopts = 'CC="$CC" CLAPACKPATH=$EBROOTCLAPACK' + +files_to_copy = ['bin', 'data', (['doc/man/*'], 'share/man/man1')] + +sanity_check_paths = { + 'files': ['bin/phast'], + 'dirs': ['data', 'share/man/man1'], +} + +moduleclass = 'bio' -- GitLab From 1086110079c7752a9559b94f4f22a31865ea1160 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 6 Sep 2017 11:02:49 +0200 Subject: [PATCH 494/845] Fix remarks --- .../CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb | 4 ++- ...cutadapt-1.14-intel-2017a-Python-2.7.13.eb | 1 + .../f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb | 34 +++++++++++++++++++ .../Jellyfish/Jellyfish-2.2.6-intel-2017a.eb | 1 - .../k/kallisto/kallisto-0.43.1-intel-2017a.eb | 5 ++- .../q/Quorum/Quorum-1.1.1-intel-2017a.eb | 2 +- ...h => Rcorrector-1.0.2-fix-makefiles.patch} | 2 ++ .../Rcorrector-1.0.2-intel-2017a.eb | 7 ++-- ...OAPdenovo-Trans-1.0.4-fix-makefiles.patch} | 0 .../SOAPdenovo-Trans-1.0.4-intel-2017a.eb | 8 ++--- .../s/SPAdes/SPAdes-3.10.1-foss-2017a.eb | 3 +- ...hannon-30a861-intel-2017a-Python-2.7.13.eb | 16 ++++++--- .../Trim_Galore-0.4.4-intel-2017a.eb | 8 +++-- 13 files changed, 69 insertions(+), 22 deletions(-) create mode 100644 easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb rename easybuild/easyconfigs/r/Rcorrector/{fix-makefile-1.0.2.patch => Rcorrector-1.0.2-fix-makefiles.patch} (87%) rename easybuild/easyconfigs/s/SOAPdenovo-Trans/{fix-makefiles-1.0.4.patch => SOAPdenovo-Trans-1.0.4-fix-makefiles.patch} (100%) diff --git a/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb index 673c7c6791..76a6d8895c 100644 --- a/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb @@ -15,10 +15,12 @@ toolchainopts = {'pic': True} source_urls = ['https://github.com/cvxopt/cvxopt/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['09997fec809179c9bb9fe8cdd202ad6ecb675f890658219022f492e0797122ee'] patches = ['%(name)s-%(version)s-fix-setup-py.patch'] +checksums = ['09997fec809179c9bb9fe8cdd202ad6ecb675f890658219022f492e0797122ee', + '89058d53c55dcdc94a9b7a6ea8c6a6e78a693210d1d27a4178f68926ae5099e3'] + dependencies = [ ('Python', '2.7.13'), ('SuiteSparse', '4.5.5', '-METIS-5.1.0'), diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb index 0bcc6df002..72895a6781 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.14-intel-2017a-Python-2.7.13.eb @@ -19,6 +19,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d'] dependencies = [ ('Python', '2.7.13'), diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb new file mode 100644 index 0000000000..95a61408bf --- /dev/null +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb @@ -0,0 +1,34 @@ +easyblock = 'PackedBinary' + +name = 'FastQC' +version = '0.11.5' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc/' +description = """FastQC is a quality control application for high throughput sequence data. + It reads in sequence data in a variety of formats and can either provide an interactive + application to review the results of several different QC checks, or create an HTML based + report which can be integrated into a pipeline.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] +sources = ['%(namelower)s_v%(version)s.zip'] +checksums = ['dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66', + '684701634440864750c9a0b99d81e122a1def78672d436daf5497bff61d9a356'] + +patches = ['FastQC_shebang.patch'] + +dependencies = [('Java', '1.8.0_144')] + +postinstallcmds = ["chmod +x %(installdir)s/fastqc"] + +sanity_check_paths = { + 'files': ['fastqc', 'fastqc_icon.ico', 'INSTALL.txt', 'jbzip2-0.9.jar', 'LICENSE.txt', 'LICENSE_JHDF5.txt', + 'README.txt', 'RELEASE_NOTES.txt', 'run_fastqc.bat', 'sam-1.103.jar', 'cisd-jhdf5.jar'], + 'dirs': ['Configuration', 'Help', 'Templates', 'uk', 'net', 'org'], +} + +sanity_check_commands = [('fastqc', '-v')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb index 96345d490a..183ced70a6 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-intel-2017a.eb @@ -12,7 +12,6 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['https://github.com/gmarcais/Jellyfish/releases/download/v%(version)s'] sources = [SOURCELOWER_TAR_GZ] - checksums = ['4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e'] parallel = 1 diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb index 843003952a..68095961ff 100644 --- a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-intel-2017a.eb @@ -14,14 +14,13 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://github.com/pachterlab/kallisto/archive/'] sources = ['v%(version)s.tar.gz'] - checksums = ['2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e'] -builddependencies = [('CMake', '3.8.2')] +builddependencies = [('CMake', '3.9.1')] dependencies = [ ('zlib', '1.2.11'), - ('HDF5', '1.8.19'), + ('HDF5', '1.10.1'), ] separate_build_dir = True diff --git a/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb b/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb index 0382266af3..494be9237d 100644 --- a/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb +++ b/easybuild/easyconfigs/q/Quorum/Quorum-1.1.1-intel-2017a.eb @@ -8,8 +8,8 @@ description = """QuorUM is an error corrector for Illumina reads""" toolchain = {'name': 'intel', 'version': '2017a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://github.com/gmarcais/Quorum/releases/download/v%(version)s'] +sources = [SOURCELOWER_TAR_GZ] checksums = ['45d099835eaad43cf915e118e9cb6423411d68c7f35a8145bc725dca366c82b5'] dependencies = [('Jellyfish', '2.2.6')] diff --git a/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefiles.patch similarity index 87% rename from easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch rename to easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefiles.patch index 7dab68cd0c..b70fb17e7f 100644 --- a/easybuild/easyconfigs/r/Rcorrector/fix-makefile-1.0.2.patch +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefiles.patch @@ -1,3 +1,5 @@ +# Patch makefile to use EB values +# wpoely86@gmail.com --- Makefile.orig 2017-08-14 12:33:11.280163633 +0200 +++ Makefile 2017-08-14 12:36:46.085730155 +0200 @@ -1,6 +1,6 @@ diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb index 67947aaafa..8a86e3f1cf 100644 --- a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb @@ -9,10 +9,11 @@ description = """Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error corre toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'cstd': 'c++11'} -sources = ['v%(version)s.tar.gz'] source_urls = ['https://github.com/mourisl/Rcorrector/archive'] - -patches = ['fix-makefile-%(version)s.patch'] +sources = ['v%(version)s.tar.gz'] +patches = ['%(name)s-%(version)s-fix-makefile.patch'] +checksums = ['426c7ab5fbb968536dbb4daf6913599f99b50eaabbea8013930da77f1235d9c6', + '157f7edca282499444aeddb22114a262a9ffef7311ea534b8e83509f6f7bf6b4'] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.0.4.patch b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-fix-makefiles.patch similarity index 100% rename from easybuild/easyconfigs/s/SOAPdenovo-Trans/fix-makefiles-1.0.4.patch rename to easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-fix-makefiles.patch diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb index e2e16d74fd..9b78a12c9c 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb @@ -10,11 +10,11 @@ adapt to alternative splicing and different expression level among transcripts. toolchain = {'name': 'intel', 'version': '2017a'} -sources = ['%(version)s.tar.gz'] source_urls = ['https://github.com/aquaskyline/SOAPdenovo-Trans/archive/'] -checksums = ['378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795'] - -patches = ['fix-makefiles-%(version)s.patch'] +sources = ['%(version)s.tar.gz'] +patches = ['%(name)s-%(version)s-fix-makefiles.patch'] +checksums = ['378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795', + '15c420a5e2c2a5a5837dbb1223a6b02b78f059b162e82952c7ceee83fdfdcffb'] dependencies = [('zlib', '1.2.11')] diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb index 7c013e44e4..7327cf5610 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2017a.eb @@ -19,8 +19,9 @@ toolchain = {'name': 'foss', 'version': '2017a'} source_urls = ['http://cab.spbu.ru/files/release%(version)s'] sources = [SOURCE_TAR_GZ] +checksums = ['d49dd9eb947767a14a9896072a1bce107fb8bf39ed64133a9e2f24fb1f240d96'] -builddependencies = [('CMake', '3.8.2')] +builddependencies = [('CMake', '3.9.1')] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb index a1587a74b6..5e33a04643 100644 --- a/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb @@ -1,7 +1,8 @@ easyblock = 'Tarball' name = 'Shannon' -version = '30a861' +version = '20170511' +commit = '30a8619' versionsuffix = '-Python-%(pyver)s' homepage = 'https://sreeramkannan.github.io/Shannon/' @@ -9,8 +10,12 @@ description = """Shannon is a program for assembling transcripts from RNA-Seq da toolchain = {'name': 'intel', 'version': '2017a'} -sources = ['%(version)s.tar.gz'] +sources = [{ + 'filename': '%s.tar.gz' % commit, + 'download_filename': '%(name)s-%(version)s.tar.gz', +}] source_urls = ['https://github.com/sreeramkannan/Shannon/archive/'] +checksums = ['436a5ec9723a13314cd18f95b89e18d4da94f3710545291d4b18162447f28ab3'] dependencies = [ ('Python', '2.7.13'), @@ -19,13 +24,14 @@ dependencies = [ ('Quorum', '1.1.1'), ] -postinstallcmds = ["sed -i '1 i#!/usr/bin/env python' %(installdir)s/*.py", "chmod +x %(installdir)s/*.py"] +postinstallcmds = ["sed -i '1 i#!/usr/bin/env python' %(installdir)s/*.py", + "chmod +x %(installdir)s/*.py"] modextrapaths = {'PATH': ['']} sanity_check_paths = { - 'files': [], - 'dirs': ["."] + 'files': ['shannon.py', 'run_quorum.py'], + 'dirs': [] } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb index 40247e6a53..d1bbd95d59 100755 --- a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb +++ b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb @@ -1,7 +1,6 @@ # 0.4.2 modified by: # Adam Huffman # The Francis Crick Institute -# TODO: deal with the hardcoding of /usr/bin/perl easyblock = "PackedBinary" @@ -15,13 +14,16 @@ description = """A wrapper tool around Cutadapt and FastQC to consistently apply toolchain = {'name': 'intel', 'version': '2017a'} -sources = ['%(namelower)s_v%(version)s.zip'] source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] +sources = ['%(namelower)s_v%(version)s.zip'] +checksums = ['ccd7eecc73327da29230f3e7c7311a4e21b2cfe7282be18fa059ba900fc33116'] install_cmd = "cp -a * %(installdir)s && chmod +x %(installdir)s/%(namelower)s" +postinstallcmds = ["sed -i '1 i#!/usr/bin/env perl' %(installdir)s/%(namelower)s"] + dependencies = [ - ('FastQC', '0.11.5', '-Java-1.8.0_74', True), + ('FastQC', '0.11.5', '-Java-1.8.0_144', True), ('cutadapt', '1.14', '-Python-2.7.13'), ] -- GitLab From 4ee3d5b7f70078f03a8feced8741ed175d5b1261 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 6 Sep 2017 11:24:45 +0200 Subject: [PATCH 495/845] Fix typos --- ....2-fix-makefiles.patch => Rcorrector-1.0.2-fix-makefile.patch} | 0 ...on-2.7.13.eb => Shannon-20170511-intel-2017a-Python-2.7.13.eb} | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/r/Rcorrector/{Rcorrector-1.0.2-fix-makefiles.patch => Rcorrector-1.0.2-fix-makefile.patch} (100%) rename easybuild/easyconfigs/s/Shannon/{Shannon-30a861-intel-2017a-Python-2.7.13.eb => Shannon-20170511-intel-2017a-Python-2.7.13.eb} (100%) diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefiles.patch b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefile.patch similarity index 100% rename from easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefiles.patch rename to easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-fix-makefile.patch diff --git a/easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb similarity index 100% rename from easybuild/easyconfigs/s/Shannon/Shannon-30a861-intel-2017a-Python-2.7.13.eb rename to easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb -- GitLab From 486da9c113a9e1ca66afd021e7d77e6ad4687465 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 6 Sep 2017 11:42:01 +0200 Subject: [PATCH 496/845] Wrong keys for download in Shannon --- .../s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb index 5e33a04643..329a6b0178 100644 --- a/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb @@ -11,8 +11,8 @@ description = """Shannon is a program for assembling transcripts from RNA-Seq da toolchain = {'name': 'intel', 'version': '2017a'} sources = [{ - 'filename': '%s.tar.gz' % commit, - 'download_filename': '%(name)s-%(version)s.tar.gz', + 'filename': '%(name)s-%(version)s.tar.gz', + 'download_filename': '%s.tar.gz' % commit, }] source_urls = ['https://github.com/sreeramkannan/Shannon/archive/'] checksums = ['436a5ec9723a13314cd18f95b89e18d4da94f3710545291d4b18162447f28ab3'] -- GitLab From 727e538a24c7f008c8e08a9d46ac92469110a94e Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 6 Sep 2017 12:09:33 +0200 Subject: [PATCH 497/845] Fix wrong checksum --- .../easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb index 8a86e3f1cf..d7e2978510 100644 --- a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb @@ -13,7 +13,7 @@ source_urls = ['https://github.com/mourisl/Rcorrector/archive'] sources = ['v%(version)s.tar.gz'] patches = ['%(name)s-%(version)s-fix-makefile.patch'] checksums = ['426c7ab5fbb968536dbb4daf6913599f99b50eaabbea8013930da77f1235d9c6', - '157f7edca282499444aeddb22114a262a9ffef7311ea534b8e83509f6f7bf6b4'] + '785a24b8af0b075d813ee4cd83f7480dd35365d9a0a2b81d80b6eb210bcf0bd0'] dependencies = [ ('zlib', '1.2.11'), -- GitLab From bcdc00c45775fea8acb89965799e071356f82648 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 6 Sep 2017 16:04:21 +0200 Subject: [PATCH 498/845] Fileset for an iomkl toolchain build ontop of the intel/foss 2017b components --- .../h/HPL/HPL-2.2-iomkl-2017.09.eb | 19 ++++++++++ .../i/imkl/imkl-2017.3.196-iompi-2017.09.eb | 38 +++++++++++++++++++ .../easyconfigs/i/iomkl/iomkl-2017.09.eb | 22 +++++++++++ .../easyconfigs/i/iompi/iompi-2017.09.eb | 21 ++++++++++ ....1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb | 35 +++++++++++++++++ 5 files changed, 135 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb create mode 100644 easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb create mode 100644 easybuild/easyconfigs/i/iompi/iompi-2017.09.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb new file mode 100644 index 0000000000..c308491cd1 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb @@ -0,0 +1,19 @@ +name = 'HPL' +version = '2.2' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) + arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available + implementation of the High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'iomkl', 'version': '2017.09'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] +checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb new file mode 100644 index 0000000000..45797675e0 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb @@ -0,0 +1,38 @@ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ + +name = 'imkl' +version = '2017.3.196' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '2017.09'} + +sources = ['l_mkl_%(version)s.tgz'] +checksums = ['fd7295870fa164d6138c9818304f25f2bb263c814a6c6539c9fe4e104055f1ca'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +interfaces = True + +postinstallcmds = [ + # extract the examples + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/' +] + +modextravars = { + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb b/easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb new file mode 100644 index 0000000000..15adfb064c --- /dev/null +++ b/easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb @@ -0,0 +1,22 @@ +easyblock = "Toolchain" + +name = 'iomkl' +version = '2017.09' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & + OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2017.4.196' +gccsuff = '-GCC-6.4.0-2.28' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('OpenMPI', '2.1.1', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '2017.3.196', '', ('iompi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017.09.eb b/easybuild/easyconfigs/i/iompi/iompi-2017.09.eb new file mode 100644 index 0000000000..50586799ed --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-2017.09.eb @@ -0,0 +1,21 @@ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ +easyblock = "Toolchain" + +name = 'iompi' +version = '2017.09' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Open MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2017.4.196' +compversuff = '-GCC-6.4.0-2.28' + +dependencies = [ + ('icc', compver, compversuff), + ('ifort', compver, compversuff), + ('OpenMPI', '2.1.1', '', ('iccifort', '%s%s' % (compver, compversuff))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..92aa7215fa --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '2.1.1' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2017.4.196-GCC-6.4.0-2.28'} + +sources = [SOURCELOWER_TAR_GZ] + +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'] + +dependencies = [('hwloc', '1.11.7')] + +configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': [], +} + +moduleclass = 'mpi' -- GitLab From c6fb74940ea92a890a771ec704070cc4a5ed28e0 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 6 Sep 2017 20:52:26 +0200 Subject: [PATCH 499/845] changed toolchain version from 2017.09 to 2017b --- .../h/HPL/{HPL-2.2-iomkl-2017.09.eb => HPL-2.2-iomkl-2017b.eb} | 2 +- ...17.3.196-iompi-2017.09.eb => imkl-2017.3.196-iompi-2017b.eb} | 2 +- .../easyconfigs/i/iomkl/{iomkl-2017.09.eb => iomkl-2017b.eb} | 2 +- .../easyconfigs/i/iompi/{iompi-2017.09.eb => iompi-2017b.eb} | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/h/HPL/{HPL-2.2-iomkl-2017.09.eb => HPL-2.2-iomkl-2017b.eb} (93%) rename easybuild/easyconfigs/i/imkl/{imkl-2017.3.196-iompi-2017.09.eb => imkl-2017.3.196-iompi-2017b.eb} (96%) rename easybuild/easyconfigs/i/iomkl/{iomkl-2017.09.eb => iomkl-2017b.eb} (96%) rename easybuild/easyconfigs/i/iompi/{iompi-2017.09.eb => iompi-2017b.eb} (96%) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017b.eb similarity index 93% rename from easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017b.eb index c308491cd1..18faf1a6a7 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017.09.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-iomkl-2017b.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'iomkl', 'version': '2017.09'} +toolchain = {'name': 'iomkl', 'version': '2017b'} toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017b.eb similarity index 96% rename from easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb rename to easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017b.eb index 45797675e0..74a22643af 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017.09.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-iompi-2017b.eb @@ -9,7 +9,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'iompi', 'version': '2017.09'} +toolchain = {'name': 'iompi', 'version': '2017b'} sources = ['l_mkl_%(version)s.tgz'] checksums = ['fd7295870fa164d6138c9818304f25f2bb263c814a6c6539c9fe4e104055f1ca'] diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb b/easybuild/easyconfigs/i/iomkl/iomkl-2017b.eb similarity index 96% rename from easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb rename to easybuild/easyconfigs/i/iomkl/iomkl-2017b.eb index 15adfb064c..3a41c0a1b3 100644 --- a/easybuild/easyconfigs/i/iomkl/iomkl-2017.09.eb +++ b/easybuild/easyconfigs/i/iomkl/iomkl-2017b.eb @@ -1,7 +1,7 @@ easyblock = "Toolchain" name = 'iomkl' -version = '2017.09' +version = '2017b' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017.09.eb b/easybuild/easyconfigs/i/iompi/iompi-2017b.eb similarity index 96% rename from easybuild/easyconfigs/i/iompi/iompi-2017.09.eb rename to easybuild/easyconfigs/i/iompi/iompi-2017b.eb index 50586799ed..218aa8ffd0 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017.09.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017b.eb @@ -2,7 +2,7 @@ easyblock = "Toolchain" name = 'iompi' -version = '2017.09' +version = '2017b' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel C/C++ and Fortran compilers, alongside Open MPI.""" -- GitLab From 620e8cfbf64a24f08e8a0e071bb54e51f93c5067 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 07:06:40 +0200 Subject: [PATCH 500/845] add missing binutils build dep for texinfo --- easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb b/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb index 5ff7e5d7fd..26d55908b2 100644 --- a/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/t/texinfo/texinfo-6.4-GCCcore-5.4.0.eb @@ -23,6 +23,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_XZ] checksums = ['6ae2e61d87c6310f9af7c6f2426bd0470f251d1a6deb61fba83a3b3baff32c3a'] +builddependencies = [('binutils', '2.26')] + osdependencies = ['texlive'] preinstallopts = "make TEXMF=%(installdir)s/texmf install-tex && " -- GitLab From 7d4ed56161b13407b73730e0a4969bc58216913b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 11:07:08 +0200 Subject: [PATCH 501/845] adding easyconfigs: Boost-1.65.0-intel-2017a-Python-2.7.13.eb --- .../Boost-1.65.0-intel-2017a-Python-2.7.13.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.65.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.65.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.65.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..29bd589891 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.65.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.65.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = "Boost provides free peer-reviewed portable C++ source libraries." + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['https://sourceforge.net/projects/%(namelower)s/files/%(namelower)s/%(version)s'] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['8a142d33ab4b4ed0de3abea3280ae3b2ce91c48c09478518c73e5dd2ba8f20aa'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('Python', '2.7.13'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From e0e2c723e466129c5e4a80c1635ddb196f88f567 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 12:40:07 +0200 Subject: [PATCH 502/845] consistently include xkeyboard-config in X11 bundle + add required intltool as build dep --- ...tltool-0.51.0-GCCcore-5.4.0-Perl-5.24.0.eb | 30 + ...tltool-0.51.0-GCCcore-6.3.0-Perl-5.24.1.eb | 30 + .../intltool-0.51.0-foss-2015a-Perl-5.22.0.eb | 26 + .../intltool-0.51.0-foss-2016b-Perl-5.24.0.eb | 1 + .../p/Perl/Perl-5.24.0-GCCcore-5.4.0.eb | 903 +++++++++++++ .../p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb | 1132 +++++++++++++++++ .../x/X11/X11-20160819-GCCcore-5.4.0.eb | 5 +- .../x/X11/X11-20160819-foss-2015a.eb | 2 + .../x/X11/X11-20160819-intel-2016b.eb | 2 + .../x/X11/X11-20170129-GCCcore-6.3.0.eb | 6 +- .../x/X11/X11-20170129-gimkl-2017a.eb | 2 + .../x/X11/X11-20170314-GCCcore-6.3.0.eb | 6 +- ...arser-2.44_01-GCCcore-5.4.0-Perl-5.24.0.eb | 32 + ...arser-2.44_01-GCCcore-6.3.0-Perl-5.24.1.eb | 32 + ...L-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb | 28 + 15 files changed, 2232 insertions(+), 5 deletions(-) create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-5.4.0-Perl-5.24.0.eb create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.3.0-Perl-5.24.1.eb create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-5.4.0.eb create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-5.4.0-Perl-5.24.0.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.3.0-Perl-5.24.1.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-5.4.0-Perl-5.24.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-5.4.0-Perl-5.24.0.eb new file mode 100644 index 0000000000..328df5e9ad --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-5.4.0-Perl-5.24.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.24.0' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] + +builddependencies = [ + ('binutils', '2.26'), +] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.3.0-Perl-5.24.1.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.3.0-Perl-5.24.1.eb new file mode 100644 index 0000000000..fe00c04984 --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.3.0-Perl-5.24.1.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.24.1' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb new file mode 100644 index 0000000000..2a644be0e6 --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.22.0' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb index f1ede983f8..e1618f9dc6 100644 --- a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2016b-Perl-5.24.0.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] sources = [SOURCE_TAR_GZ] +checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] dependencies = [ ('XML-Parser', '2.44_01', versionsuffix), diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-5.4.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-5.4.0.eb new file mode 100644 index 0000000000..c694d32b40 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-5.4.0.eb @@ -0,0 +1,903 @@ +name = 'Perl' +version = '5.24.0' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['7e430c6e0e0d9017c3f72898850dea657fa6b51909220a7bcf305a87f2475202'] + +builddependencies = [('binutils', '2.26')] + +exts_list = [ + ('Config::General', '2.61', { + 'source_tmpl': 'Config-General-2.61.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-6.04.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-0.011.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Test::Harness', '3.36', { + 'source_tmpl': 'Test-Harness-3.36.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-0.008.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-0.039.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('Regexp::Common', '2016060801', { + 'source_tmpl': 'Regexp-Common-2016060801.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-0.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-5.2.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-0.014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-0.026.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('DateTime::Locale', '1.05', { + 'source_tmpl': 'DateTime-Locale-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('DateTime::TimeZone', '2.00', { + 'source_tmpl': 'DateTime-TimeZone-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-0.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Module::Build', '0.4218', { + 'source_tmpl': 'Module-Build-0.4218.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + }), + ('Try::Tiny', '0.24', { + 'source_tmpl': 'Try-Tiny-0.24.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Params::Validate', '1.24', { + 'source_tmpl': 'Params-Validate-1.24.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('List::MoreUtils', '0.416', { + 'source_tmpl': 'List-MoreUtils-0.416.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Exporter::Tiny', '0.042', { + 'source_tmpl': 'Exporter-Tiny-0.042.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-1.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('DateTime', '1.34', { + 'source_tmpl': 'DateTime-1.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-1.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-2.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-0.41.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-1.29.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-2.26.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-0.5001.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + }), + ('DBI', '1.636', { + 'source_tmpl': 'DBI-1.636.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + }), + ('DBD::SQLite', '1.50', { + 'source_tmpl': 'DBD-SQLite-1.50.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Archive::Extract', '0.76', { + 'source_tmpl': 'Archive-Extract-0.76.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-0.73.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-3.62.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('ExtUtils::MakeMaker', '7.18', { + 'source_tmpl': 'ExtUtils-MakeMaker-7.18.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Simple', '1.302037', { + 'source_tmpl': 'Test-Simple-1.302037.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-1.29.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-0.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + }), + ('Test::Exception', '0.43', { + 'source_tmpl': 'Test-Exception-0.43.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::Table', '1.130', { + 'source_tmpl': 'Text-Table-1.130.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('MIME::Types', '2.13', { + 'source_tmpl': 'MIME-Types-2.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-0.16.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-1.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + }), + ('HTML::Parser', '3.72', { + 'source_tmpl': 'HTML-Parser-3.72.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-1.2.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-1.001.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-0.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-0.36.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('URI', '1.71', { + 'source_tmpl': 'URI-1.71.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-0.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-0.04.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-0.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Pod::POM', '2.01', { + 'source_tmpl': 'Pod-POM-2.01.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-0.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Text::Diff', '1.44', { + 'source_tmpl': 'Text-Diff-1.44.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-0.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('IO::Socket::SSL', '2.029', { + 'source_tmpl': 'IO-Socket-SSL-2.029.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-0.114.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Getopt::Long', '2.48', { + 'source_tmpl': 'Getopt-Long-2.48.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-0.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Mouse', 'v2.4.5', { + 'source_tmpl': 'Mouse-v2.4.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Test::Version', '2.04', { + 'source_tmpl': 'Test-Version-2.04.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('DBIx::Admin::TableInfo', '3.01', { + 'source_tmpl': 'DBIx-Admin-TableInfo-3.01.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Net::HTTP', '6.09', { + 'source_tmpl': 'Net-HTTP-6.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Test::Deep', '1.120', { + 'source_tmpl': 'Test-Deep-1.120.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-0.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BO/BOBTFISH'], + }), + ('Moo', '2.002004', { + 'source_tmpl': 'Moo-2.002004.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Hash::Merge', '0.200', { + 'source_tmpl': 'Hash-Merge-0.200.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('SQL::Abstract', '1.81', { + 'source_tmpl': 'SQL-Abstract-1.81.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RI/RIBASUSHI'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-6.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-0.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-0.94.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('HTML::Entities::Interpolate', '1.09', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.09.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-1.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Test::Most', '0.34', { + 'source_tmpl': 'Test-Most-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OV/OVID'], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Test::Differences', '0.64', { + 'source_tmpl': 'Test-Differences-0.64.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTTP::Tiny', '0.058', { + 'source_tmpl': 'HTTP-Tiny-0.058.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('Package::DeprecationManager', '0.17', { + 'source_tmpl': 'Package-DeprecationManager-0.17.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-2.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-2.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('version', '0.9917', { + 'source_tmpl': 'version-0.9917.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-0.53.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Sub::Name', '0.15', { + 'source_tmpl': 'Sub-Name-0.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece', '1.31', { + 'source_tmpl': 'Time-Piece-1.31.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ES/ESAYM'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-6.01.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-3.030.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-1.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Canary::Stability', '2011', { + 'source_tmpl': 'Canary-Stability-2011.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('AnyEvent', '7.12', { + 'source_tmpl': 'AnyEvent-7.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-0.48.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-1.221.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-1.51.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-1.71.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Net::SMTP::SSL', '1.03', { + 'source_tmpl': 'Net-SMTP-SSL-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Devel::GlobalDestruction', '0.13', { + 'source_tmpl': 'Devel-GlobalDestruction-0.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-6.02.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Expect', '1.33', { + 'source_tmpl': 'Expect-1.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JA/JACOBY/'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-v6.0.1.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-0.56.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('Statistics::Descriptive', '3.0612', { + 'source_tmpl': 'Statistics-Descriptive-3.0612.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-0.23.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('LWP::Simple', '6.15', { + 'source_tmpl': 'libwww-perl-6.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-0.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('GD::Graph', '1.52', { + 'source_tmpl': 'GDGraph-1.52.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-0.30.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('boolean', '0.45', { + 'source_tmpl': 'boolean-0.45.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-1.75.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-2.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-5.72.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Class::Inspector', '1.28', { + 'source_tmpl': 'Class-Inspector-1.28.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Parse::RecDescent', '1.967013', { + 'source_tmpl': 'Parse-RecDescent-1.967013.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + }), + ('Carp', '1.38', { + 'source_tmpl': 'Carp-1.38.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::XPath', '1.37', { + 'source_tmpl': 'XML-XPath-1.37.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + }), + ('Capture::Tiny', '0.42', { + 'source_tmpl': 'Capture-Tiny-0.42.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-2.90.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-1.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-0.004.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-1.1903.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-0.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-1.7.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('strictures', '2.000003', { + 'source_tmpl': 'strictures-2.000003.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-2.17.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('File::Which', '1.21', { + 'source_tmpl': 'File-Which-1.21.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-1.005.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-0.17024.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Mock::Quick', '1.111', { + 'source_tmpl': 'Mock-Quick-1.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::CSV', '1.33', { + 'source_tmpl': 'Text-CSV-1.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + }), + ('Class::DBI', '3.0.17', { + 'source_tmpl': 'Class-DBI-v3.0.17.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('List::AllUtils', '0.11', { + 'source_tmpl': 'List-AllUtils-0.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-0.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Exception::Class', '1.40', { + 'source_tmpl': 'Exception-Class-1.40.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-4.42.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-0.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-0.61.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + }), + ('Eval::Closure', '0.14', { + 'source_tmpl': 'Eval-Closure-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('HTTP::Request', '6.11', { + 'source_tmpl': 'HTTP-Message-6.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('XML::Twig', '3.49', { + 'source_tmpl': 'XML-Twig-3.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::Simple', '2.22', { + 'source_tmpl': 'XML-Simple-2.22.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-0.928.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-6.01.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-1.04.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + }), + ('Test::Exception::LessClever', '0.007', { + 'source_tmpl': 'Test-Exception-LessClever-0.007.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Scalar::Util', '1.45', { + 'source_tmpl': 'Scalar-List-Utils-1.45.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-6.01.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-2.16.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-0.38.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-1.002005.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-1.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Format', '0.59', { + 'source_tmpl': 'Text-Format-0.59.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Devel::CheckCompiler', '0.06', { + 'source_tmpl': 'Devel-CheckCompiler-0.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Log::Handler', '0.84', { + 'source_tmpl': 'Log-Handler-0.84.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Devel::StackTrace', '2.01', { + 'source_tmpl': 'Devel-StackTrace-2.01.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Term::ReadKey', '2.33', { + 'source_tmpl': 'TermReadKey-2.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Moose', '2.1804', { + 'source_tmpl': 'Moose-2.1804.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Font::TTF', '1.05', { + 'source_tmpl': 'Font-TTF-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-0.048.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('SQL::Statement', '1.410', { + 'source_tmpl': 'SQL-Statement-1.410.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-0.37.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-0.110.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('CPANPLUS', '0.9160', { + 'source_tmpl': 'CPANPLUS-0.9160.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-1.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-3.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Lingua::EN::PluralToSingular', '0.18', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.18.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-0.29.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-0.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), + ('Mail::Util', '2.18', { + 'source_tmpl': 'MailTools-2.18.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Text::Template', '1.46', { + 'source_tmpl': 'Text-Template-1.46.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MJ/MJD'], + }), + ('PDF::API2', '2.031', { + 'source_tmpl': 'PDF-API2-2.031.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/'], + }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..14b5d790fe --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb @@ -0,0 +1,1132 @@ +name = 'Perl' +version = '5.24.1' + +homepage = 'https://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e6c185c9b09bdb3f1b13f678999050c639859a7ef39c8cad418448075f5918af'] + +builddependencies = [('binutils', '2.27')] + +# !! order of extensions is important !! +# extensions updated on April 4th 2017 +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c'], + }), + ('ExtUtils::Helpers', '0.026', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416'], + }), + ('Test::Harness', '3.38', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['af906dd279217a6db5064a058658f2b1d5aa1d307ed6f142d96ac4d339754c01'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb'], + }), + ('Text::Glob', '0.11', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287'], + }), + ('Regexp::Common', '2016060801', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': ['fc2fc178facf0292974d6511bad677dd038fe60d7ac118e3b83a1ca9e98a8403'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': ['423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': ['b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0'], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08'], + }), + ('File::ShareDir::Install', '0.11', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8'], + }), + ('DateTime::Locale', '1.16', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe'], + }), + ('DateTime::TimeZone', '2.11', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['a7c0b2581d2bf6d5cc535364099a67678a9f6ee608e5042dff9ef9c4c577ea6b'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': ['2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d'], + }), + ('Module::Build', '0.4222', { + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['e74b45d9a74736472b74830599cec0d1123f992760f9cd97104f94bee800b160'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + 'checksums': ['4c44fe0ea255a9fd00741ee545063f6692d2a28e7ef2fbaad1b24a92803362a4'], + }), + ('Try::Tiny', '0.28', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['f1d166be8aa19942c4504c9111dade7aacb981bc5b3a2a5c5f6019646db8c146'], + }), + ('Params::Validate', '1.26', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['821ac3cfa9715b94f60926faf316b9ff722785594b37036202371ad2303a72ed'], + }), + ('List::MoreUtils', '0.418', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['365651edea4e0c806576e4dcfc3dfb98bb4cbb343bc5c3e04cdc7b5b71ed4988'], + }), + ('Exporter::Tiny', '0.044', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + 'checksums': ['eda868cc2da094b685ceace4245b83de11f439feb98e0ec8246cfbb9109c88ab'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': ['38220d04f02e3a803193c2575a1644cce0b95ad4b95c19eb932b94e2647ef678'], + }), + ('DateTime', '1.42', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['efa4badf07365d1b03ee5527fc79baaf7d8b449bf7baad13599f04177232416e'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['9a48433f86e08ce18e03526e2982de52162eb909d19735460f07eefcaf463ea6'], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + 'checksums': ['4b23542491af010d44a5c7c861244738acc74ababae6b8838d354dfb19462b5e'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + 'checksums': ['9d4de21612253a1d3252ff7657d7e832dcf3cc2a748a8c84f73de618a3a38239'], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': ['2d04eb011aa06cee633c367d1f322b8d937020fde5d5393fad6a26c93725c4a8'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['e7e1cf36026f1ef96d8233e18a3fb39e1eafe9109edc639ecf25b20651cd76be'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + 'checksums': ['3c5e08329106f9cee3ab444b81331c5935f83084a151d88505e7a465da540f41'], + }), + ('DBI', '1.636', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': ['8f7ddce97c04b4b7a000e65e5d05f679c964d62c8b02c94c1a7d815bb2dd676c'], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['11a815fc45fdf0efabb1822ab77faad8b9eea162572c5f0940c8ed7d56e6b8b8'], + }), + ('Archive::Extract', '0.80', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['25cbc2d5626c14d39a0b5e4fe8383941e085c9a7e0aa873d86e81b6e709025f4'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + 'checksums': ['445535b3dfab88140c7a0d2776b1e78f254dc7e9c81072d5a01afc95a5db499a'], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + 'checksums': ['f7dbebf65261ed0e5abd0f57052b64d665a1a830bab4c8bbc220f235bd39caf5'], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['36350e12f58871437ba03391f80a506e447e3c6630cc37d0625bc25ff1c7b4d2'], + }), + ('Test::Simple', '1.302078', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': ['ab47f3a980ad9aedb78a731719a0487f02a7bc30c17b65457e6dfc3a89a04c15'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + 'checksums': ['a3dc1526f3dde72d3c64ea00007b86ce608cdcd93567cf6e6e42dc10fdc4511d'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': ['8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': 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['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': ['ea0944f2f5ec98d895bef6d503e6e4a376fea6383a6bc64c7670d46ff2218cad'], + }), + ('HTTP::Request', '6.11', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['e7b368077ae6a188d99920411d8f52a8e5acfb39574d4f5c24f46fd22533d81b'], + }), + ('XML::Twig', '3.52', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + 'checksums': ['fef75826c24f2b877d0a0d2645212fc4fb9756ed4d2711614ac15c497e8680ad'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['2a3f4ad8442d9070780e58ef43722d19d1ee21a803bf7c8206877a10482de5a0'], + }), + ('XML::Simple', '2.22', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': ['b9450ef22ea9644ae5d6ada086dc4300fa105be050a2030ebd4efd28c198eb49'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['61e567a7679588887b7b86d427bc476ea6d77fffe7e0d17d640f89007d98ef0f'], + }), + ('HTTP::Cookies', '6.03', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': ['05051f2761832317554b0be4b74012c35fd278f6af2c9d218f055e0de891457c'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + 'checksums': ['1bbfbf7d1d4871e5a83bab2137e22d089078206815190eb1d5c1260a3499456f'], + }), + ('Test::Exception::LessClever', '0.009', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['18790b0cc5f0a51468495c3847b16738f785a2d460403595001e0b932e5db676'], + }), + ('Scalar::Util', '1.47', { + 'source_tmpl': 'Scalar-List-Utils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + 'checksums': ['c483347372a96972d61fd186522a9dafc2da899ef2951964513b7e8efb37efe1'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': ['0b3035ffdb909aa1f7ded6b608fa9d894421c82c097d51e7171170d67579a9cb'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': ['6b1e45acc561e0708e00a2fcf16e157cad8b8963d1bf73726f77dd809b8aebc4'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['43fd867742701a3f9fcc7bd59838ab72c6490c0ebaf66901068ec6997514adc2'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': ['85b94f3513093ec0a25b91f9f2571918519ae6f2b7a1e8546f8f78d09a877143'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['e8b9941da0f9f0c9c01068401a5e81341f0e3707d1c754f8e11f42a7e629e333'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': ['6614fa7518f094f853741b63c73f3627168c5d3aca89b1d02b1016dc32854e09'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + 'checksums': ['9fb0534bb7ef6ca1f6cc1dc3f29750d6d424394d14c40efdc77832fad3cebde8'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + 'checksums': ['b2296fdcf9addc8e8fc39e15eb2c3d81145f6355258438bc783b12b02c41cb81'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': ['bd9e77a3fb662b40b43b18d3280cd352edf9fad8d94283e518181cc1ce9f0567'], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': ['bd725df481d7223ee787e154c116098b08a129f55e0763194b07ebea3dda33ec'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['247f0d88e55076fd3f6c7bf3fd527989d62fcc1ef9bde9bf2ee11c280adcaeab'], + }), + ('Text::Format', '0.60', { + 'source_tmpl': 'Text-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': ['664f313570604624ff9e1fc9b26b6d04e06897b3e4eac83089fc0905a692a2b8'], + }), + ('Devel::CheckCompiler', '0.07', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + 'checksums': ['768b7697b4b8d4d372c7507b65e9dd26aa4223f7100183bbb4d3af46d43869b5'], + }), + ('Log::Handler', '0.88', { + 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + 'checksums': ['45bf540ab2138ed3ff93afc205b0516dc75755b86acdcc5e75c41347833c293d'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': ['85e2f805bfc81cd738c294316b27a515397036f397a0ff1c6c8d754c38530306'], + }), + ('Devel::StackTrace', '2.02', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['cbbd96db0ecf194ed140198090eaea0e327d9a378a4aa15f9a34b3138a91931f'], + }), + ('Term::ReadKey', '2.14', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KJ/KJALB'], + 'checksums': ['6009158cd9889f8c00da78af99847ace5052f1ca04fa30eb3411fdc26d54c9a8'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + 'checksums': ['11b7549b13ec5d87cc695dd4c777cd02983dd5fe9866012877fb530f48b3dfd0'], + }), + ('Moose', '2.2004', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['e4c881bf8d8fd5821aea8a8c7c57ed850c2373d4800949798a55c06ca9e8d2b0'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': ['f27733e8d89cf2ab621284c2584da90ab0cb743ba2295ee739fe51bf92561e37'], + }), + ('Font::TTF', '1.06', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': ['4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565'], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe'], + }), + ('SQL::Statement', '1.410', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['7367fcda896367c96d98416cad423c9f98adb7e04b793c5c7deb3052a1213182'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': ['ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': ['06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c'], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3'], + }), + ('CPANPLUS', '0.9164', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['3fcd8c7bb1973df484236fc3d59ed17c8a35057f56546ba44bfc780b97fec0a8'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': ['a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d'], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed'], + }), + ('Lingua::EN::PluralToSingular', '0.19', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': ['c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e'], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': ['b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7'], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': ['7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': ['c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7'], + }), + ('Mail::Util', '2.18', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': ['dfee9e770257371112f20d978e637759e81bc4f19e97b083585c71ecab37b527'], + }), + ('Text::Template', '1.47', { + 'source_tmpl': 'Text-Template-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': ['50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc'], + }), + ('PDF::API2', '2.031', { + 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': ['6ea5d38f99dfb1e8acf57c9c7579659b3eee84944295a135f90e607e0a3f43e9'], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': ['bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1'], + }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + 'checksums': ['1f01cf2dc666a2ba3bf5219ec9e2290143e5e569747431412c8423916a9846c5'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + 'checksums': ['6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb b/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb index 69f438faec..634da19d17 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb @@ -17,11 +17,13 @@ source_urls = [ ] builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.26', '', True), ('Autotools', '20150215'), ('Bison', '3.0.4'), ('gettext', '0.19.8'), ('pkg-config', '0.29.1'), - ('binutils', '2.26', '', True), + ('intltool', '0.51.0', '-Perl-5.24.0') ] dependencies = [ ('freetype', '2.6.5'), @@ -114,6 +116,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), ('xcb-util-wm', '0.4.1', common_specs), ('xcb-util-cursor', '0.1.3', common_specs), + ('xkeyboard-config', '2.18', common_specs), ] # Python is required for xcb-proto diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb b/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb index 94c5bfdb69..c136436ef6 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb @@ -21,6 +21,7 @@ builddependencies = [ ('Bison', '3.0.4'), ('gettext', '0.19.4'), ('pkg-config', '0.29.1'), + ('intltool', '0.51.0', '-Perl-5.22.0') ] dependencies = [ ('freetype', '2.6.2'), @@ -113,6 +114,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), ('xcb-util-wm', '0.4.1', common_specs), ('xcb-util-cursor', '0.1.3', common_specs), + ('xkeyboard-config', '2.18', common_specs), ] # Python is required for xcb-proto diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb b/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb index 586cdcf5d6..8b3ad69c0a 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb @@ -21,6 +21,7 @@ builddependencies = [ ('Bison', '3.0.4'), ('gettext', '0.19.8'), ('pkg-config', '0.29.1'), + ('intltool', '0.51.0', '-Perl-5.24.0') ] dependencies = [ ('freetype', '2.6.5'), @@ -113,6 +114,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), ('xcb-util-wm', '0.4.1', common_specs), ('xcb-util-cursor', '0.1.3', common_specs), + ('xkeyboard-config', '2.18', common_specs), ] # Python is required for xcb-proto diff --git a/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb b/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb index 2e89d51b91..6d31ead6ab 100644 --- a/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb @@ -23,12 +23,13 @@ dependencies = [ ('zlib', '1.2.11'), ] builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), ('Autotools', '20150215'), ('Bison', '3.0.4'), ('gettext', '0.19.8.1'), ('pkg-config', '0.29.1'), - # use same binutils version that was used when building GCCcore toolchain - ('binutils', '2.27', '', True), + ('intltool', '0.51.0', '-Perl-5.24.1') ] default_easyblock = 'ConfigureMake' @@ -116,6 +117,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), # 2014-06-13 ('xcb-util-wm', '0.4.1', common_specs), # 2014-02-19 ('xcb-util-cursor', '0.1.3', common_specs), # 2016-05-12 + ('xkeyboard-config', '2.19', common_specs), # 2016-09-29 ] # Python is required for xcb-proto diff --git a/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb b/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb index 71b0754c39..ed625ff55e 100644 --- a/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb +++ b/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb @@ -26,6 +26,7 @@ builddependencies = [ ('Bison', '3.0.4'), ('gettext', '0.19.8', '', True), ('pkg-config', '0.29.1'), + ('intltool', '0.51.0', '-Perl-5.24.0') ] default_easyblock = 'ConfigureMake' @@ -113,6 +114,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), # 2014-06-13 ('xcb-util-wm', '0.4.1', common_specs), # 2014-02-19 ('xcb-util-cursor', '0.1.3', common_specs), # 2016-05-12 + ('xkeyboard-config', '2.19', common_specs), # 2016-09-29 ] # Python is required for xcb-proto diff --git a/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb b/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb index dc3461eb7f..92b3acf4d9 100644 --- a/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb @@ -23,12 +23,13 @@ dependencies = [ ('zlib', '1.2.11'), ] builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), ('Autotools', '20150215'), ('Bison', '3.0.4'), ('gettext', '0.19.8.1'), ('pkg-config', '0.29.1'), - # use same binutils version that was used when building GCCcore toolchain - ('binutils', '2.27', '', True), + ('intltool', '0.51.0', '-Perl-5.24.1') ] default_easyblock = 'ConfigureMake' @@ -116,6 +117,7 @@ components = [ ('xcb-util-renderutil', '0.3.9', common_specs), # 2014-06-13 ('xcb-util-wm', '0.4.1', common_specs), # 2014-02-19 ('xcb-util-cursor', '0.1.3', common_specs), # 2016-05-12 + ('xkeyboard-config', '2.20', common_specs), # 2017-02-01 ] # Python is required for xcb-proto diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-5.4.0-Perl-5.24.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-5.4.0-Perl-5.24.0.eb new file mode 100644 index 0000000000..0ba1170c1f --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-5.4.0-Perl-5.24.0.eb @@ -0,0 +1,32 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] + +builddependencies = [ + ('binutils', '2.26') +] + +dependencies = [ + ('Perl', '5.24.0'), + ('expat', '2.2.0') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.3.0-Perl-5.24.1.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.3.0-Perl-5.24.1.eb new file mode 100644 index 0000000000..1cba5c81d1 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.3.0-Perl-5.24.1.eb @@ -0,0 +1,32 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] + +builddependencies = [ + ('binutils', '2.27') +] + +dependencies = [ + ('Perl', '5.24.1'), + ('expat', '2.2.0') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb new file mode 100644 index 0000000000..2fac34fd88 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb @@ -0,0 +1,28 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] + +dependencies = [ + ('Perl', '5.22.0'), + ('expat', '2.1.0') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' -- GitLab From 2cd35dde9f3b30d9ce43a1ecd4f28196339d39a7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 12:44:33 +0200 Subject: [PATCH 503/845] stick with XML-Parser 2.44 with foss/2015a --- .../i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb | 2 +- ...Perl-5.22.0.eb => XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb} | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/x/XML-Parser/{XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb => XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb} (97%) diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb index 2a644be0e6..a0434ab6a7 100644 --- a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-foss-2015a-Perl-5.22.0.eb @@ -15,7 +15,7 @@ sources = [SOURCE_TAR_GZ] checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] dependencies = [ - ('XML-Parser', '2.44_01', versionsuffix), + ('XML-Parser', '2.44', versionsuffix), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb similarity index 97% rename from easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb rename to easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb index 2fac34fd88..0aa762484f 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2015a-Perl-5.22.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb @@ -1,7 +1,7 @@ easyblock = 'PerlModule' name = 'XML-Parser' -version = '2.44_01' +version = '2.44' versionsuffix = '-Perl-%(perlver)s' homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' -- GitLab From cbe117bffbd78b05a92c441b093c8e0d38f11c92 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 12:46:14 +0200 Subject: [PATCH 504/845] consistently add source URL for xkeyboard-config in X11 bundle & enhance sanity check --- easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb | 3 ++- easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb | 3 ++- easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb | 3 ++- easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb | 3 ++- easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb | 3 ++- easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb | 3 ++- 6 files changed, 12 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb b/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb index 634da19d17..eece0f4d91 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] builddependencies = [ @@ -131,7 +132,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb b/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb index c136436ef6..6d4a4f969e 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-foss-2015a.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] builddependencies = [ @@ -129,7 +130,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb b/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb index 8b3ad69c0a..16d3b26e97 100644 --- a/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb +++ b/easybuild/easyconfigs/x/X11/X11-20160819-intel-2016b.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] builddependencies = [ @@ -129,7 +130,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb b/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb index 6d31ead6ab..be96f436b9 100644 --- a/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/x/X11/X11-20170129-GCCcore-6.3.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] dependencies = [ @@ -132,7 +133,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb b/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb index ed625ff55e..825ceba6d4 100644 --- a/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb +++ b/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] dependencies = [ @@ -131,7 +132,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb b/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb index 92b3acf4d9..dd4f5649d8 100644 --- a/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/x/X11/X11-20170314-GCCcore-6.3.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://xcb.freedesktop.org/dist/', 'http://xkbcommon.org/download/', 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', ] dependencies = [ @@ -132,7 +133,7 @@ full_sanity_check = True sanity_check_paths = { 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', - 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig', 'share/X11/xkb'], } moduleclass = 'vis' -- GitLab From 30d943a461ee70f725f65961bb74ec651b04b010 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 12:50:25 +0200 Subject: [PATCH 505/845] add/fix checksums in XML-Parser easyconfigs --- .../x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb | 2 +- .../x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb index 0aa762484f..557c52cebf 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] sources = [SOURCE_TAR_GZ] -checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] +checksums = ['1ae9d07ee9c35326b3d9aad56eae71a6730a73a116b9fe9e8a4758b7cc033216'] dependencies = [ ('Perl', '5.22.0'), diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb index 8bc5e18fb1..94170b1456 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-foss-2016b-Perl-5.24.0.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] dependencies = [ ('Perl', '5.24.0'), -- GitLab From 4ec7d7c41f69cfea03b67c86a82af25d1a2fcbcd Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 7 Sep 2017 13:53:43 +0200 Subject: [PATCH 506/845] Added QML/0.2.10 for intel/2017a --- .../q/QML/QML-0.2.10-fix-setup.py.patch | 32 +++++++++++++++++++ .../QML-0.2.10-intel-2017a-Python-2.7.13.eb | 31 ++++++++++++++++++ 2 files changed, 63 insertions(+) create mode 100644 easybuild/easyconfigs/q/QML/QML-0.2.10-fix-setup.py.patch create mode 100644 easybuild/easyconfigs/q/QML/QML-0.2.10-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/q/QML/QML-0.2.10-fix-setup.py.patch b/easybuild/easyconfigs/q/QML/QML-0.2.10-fix-setup.py.patch new file mode 100644 index 0000000000..91d7f04e61 --- /dev/null +++ b/easybuild/easyconfigs/q/QML/QML-0.2.10-fix-setup.py.patch @@ -0,0 +1,32 @@ +# patch setup.py to use EB values for building +# wpoely86@gmail.com +diff -ur qml-0.2.10.orig/setup.py qml-0.2.10/setup.py +--- qml-0.2.10.orig/setup.py 2017-06-02 18:14:17.000000000 +0200 ++++ qml-0.2.10/setup.py 2017-09-07 13:44:12.648192634 +0200 +@@ -1,3 +1,4 @@ ++import os + import sys + from numpy.distutils.core import Extension, setup + +@@ -16,10 +17,17 @@ + FORTRAN = "f90" + + # GNU (default) +-COMPILER_FLAGS = ["-O3", "-fopenmp", "-m64", "-march=native", "-fPIC", +- "-Wno-maybe-uninitialized", "-Wno-unused-function", "-Wno-cpp"] +-LINKER_FLAGS = ["-lgomp"] +-MATH_LINKER_FLAGS = ["-lblas", "-llapack"] ++COMPILER_FLAGS = os.environ.get("CFLAGS", '').split(' ') ++if not COMPILER_FLAGS: ++ COMPILER_FLAGS = ["-O3", "-fopenmp", "-m64", "-march=native", "-fPIC", "-Wno-maybe-uninitialized", "-Wno-unused-function", "-Wno-cpp"] ++ ++LINKER_FLAGS = os.environ.get("LDFLAGS", '').split(' ') ++if not LINKER_FLAGS: ++ LINKER_FLAGS = ["-lgomp"] ++ ++MATH_LINKER_FLAGS = os.environ.get("LIBLAPACK", '').split(' ') ++if not MATH_LINKER_FLAGS: ++ MATH_LINKER_FLAGS = ["-lblas", "-llapack"] + + # For clang without OpenMP: (i.e. most Apple/mac system) + if sys.platform == "darwin" and all(["gnu" not in arg for arg in sys.argv]): diff --git a/easybuild/easyconfigs/q/QML/QML-0.2.10-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/q/QML/QML-0.2.10-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..19b0dc9a7d --- /dev/null +++ b/easybuild/easyconfigs/q/QML/QML-0.2.10-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,31 @@ +easyblock = "PythonPackage" + +name = "QML" +version = "0.2.10" +versionsuffix = "-Python-%(pyver)s" + +homepage = "http://www.qmlcode.org" +description = """QML is a Python2/3-compatible toolkit for representation learning of properties + of molecules and solids.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['%(name)s-%(version)s-fix-setup.py.patch'] +checksums = [ + '48e0b6b03b28a981e75358a890bfb7e47048562eec62a4d60190c499b8805685', # qml-0.2.10.tar.gz + 'cc820f0aa800150aa08a5de95869fd0aa39bcc8e2c6eb1ba6918ecef21873535', # QML-0.2.10-fix-setup.py.patch +] + +dependencies = [ + ('Python', '2.7.13'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'chem' -- GitLab From 2f9e8bf95e524592801bfa7e419300747f1ca3ba Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Sep 2017 13:58:25 +0200 Subject: [PATCH 507/845] fix toolchain conflict for expat with gimkl/2017a --- ...intltool-0.51.0-gimkl-2017a-Perl-5.24.0.eb | 26 +++++++++++++++++ ...-Parser-2.44_01-gimkl-2017a-Perl-5.24.0.eb | 28 +++++++++++++++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-gimkl-2017a-Perl-5.24.0.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-gimkl-2017a-Perl-5.24.0.eb diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-gimkl-2017a-Perl-5.24.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-gimkl-2017a-Perl-5.24.0.eb new file mode 100644 index 0000000000..7fb4bc7c9c --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-gimkl-2017a-Perl-5.24.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.24.0' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-gimkl-2017a-Perl-5.24.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-gimkl-2017a-Perl-5.24.0.eb new file mode 100644 index 0000000000..ede6c9678e --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-gimkl-2017a-Perl-5.24.0.eb @@ -0,0 +1,28 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] + +dependencies = [ + ('Perl', '5.24.0'), + ('expat', '2.2.0') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' -- GitLab From ef2cf845b6473e1f080ec0bb79239da54c971347 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 7 Sep 2017 13:59:33 +0200 Subject: [PATCH 508/845] Fix checksums --- .../c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb | 6 ++++-- .../easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb | 6 ++++-- .../r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb | 6 ++++-- .../SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb | 6 ++++-- 4 files changed, 16 insertions(+), 8 deletions(-) diff --git a/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb index 76a6d8895c..e991d56311 100644 --- a/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/CVXOPT/CVXOPT-1.1.9-intel-2017a-Python-2.7.13.eb @@ -18,8 +18,10 @@ sources = ['%(version)s.tar.gz'] patches = ['%(name)s-%(version)s-fix-setup-py.patch'] -checksums = ['09997fec809179c9bb9fe8cdd202ad6ecb675f890658219022f492e0797122ee', - '89058d53c55dcdc94a9b7a6ea8c6a6e78a693210d1d27a4178f68926ae5099e3'] +checksums = [ + '09997fec809179c9bb9fe8cdd202ad6ecb675f890658219022f492e0797122ee', # 1.1.9.tar.gz + '89058d53c55dcdc94a9b7a6ea8c6a6e78a693210d1d27a4178f68926ae5099e3', # CVXOPT-1.1.9-fix-setup-py.patch +] dependencies = [ ('Python', '2.7.13'), diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb index 95a61408bf..46332ee18a 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.5-Java-1.8.0_144.eb @@ -14,8 +14,10 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] sources = ['%(namelower)s_v%(version)s.zip'] -checksums = ['dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66', - '684701634440864750c9a0b99d81e122a1def78672d436daf5497bff61d9a356'] +checksums = [ + 'dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66', # fastqc_v0.11.5.zip + '684701634440864750c9a0b99d81e122a1def78672d436daf5497bff61d9a356', # FastQC_shebang.patch +] patches = ['FastQC_shebang.patch'] diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb index d7e2978510..9a2677bbd0 100644 --- a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb @@ -12,8 +12,10 @@ toolchainopts = {'cstd': 'c++11'} source_urls = ['https://github.com/mourisl/Rcorrector/archive'] sources = ['v%(version)s.tar.gz'] patches = ['%(name)s-%(version)s-fix-makefile.patch'] -checksums = ['426c7ab5fbb968536dbb4daf6913599f99b50eaabbea8013930da77f1235d9c6', - '785a24b8af0b075d813ee4cd83f7480dd35365d9a0a2b81d80b6eb210bcf0bd0'] +checksums = [ + '426c7ab5fbb968536dbb4daf6913599f99b50eaabbea8013930da77f1235d9c6', # v1.0.2.tar.gz + '785a24b8af0b075d813ee4cd83f7480dd35365d9a0a2b81d80b6eb210bcf0bd0', # Rcorrector-1.0.2-fix-makefile.patch +] dependencies = [ ('zlib', '1.2.11'), diff --git a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb index 9b78a12c9c..75f99d4008 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo-Trans/SOAPdenovo-Trans-1.0.4-intel-2017a.eb @@ -13,8 +13,10 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['https://github.com/aquaskyline/SOAPdenovo-Trans/archive/'] sources = ['%(version)s.tar.gz'] patches = ['%(name)s-%(version)s-fix-makefiles.patch'] -checksums = ['378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795', - '15c420a5e2c2a5a5837dbb1223a6b02b78f059b162e82952c7ceee83fdfdcffb'] +checksums = [ + '378a54cde0ebe240fb515ba67197c053cf95393645c1ae1399b3a611be2a9795', # 1.0.4.tar.gz + '15c420a5e2c2a5a5837dbb1223a6b02b78f059b162e82952c7ceee83fdfdcffb', # SOAPdenovo-Trans-1.0.4-fix-makefiles.patch +] dependencies = [('zlib', '1.2.11')] -- GitLab From 68f3c0b441de8d0596c316fe8d2cd1fae141a1e6 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 7 Sep 2017 14:04:22 +0200 Subject: [PATCH 509/845] Make @boegel happy --- .../s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb | 6 ++++-- .../t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb | 5 ++--- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb index 329a6b0178..f0f143ee06 100644 --- a/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/s/Shannon/Shannon-20170511-intel-2017a-Python-2.7.13.eb @@ -24,8 +24,10 @@ dependencies = [ ('Quorum', '1.1.1'), ] -postinstallcmds = ["sed -i '1 i#!/usr/bin/env python' %(installdir)s/*.py", - "chmod +x %(installdir)s/*.py"] +postinstallcmds = [ + "sed -i '1 i#!/usr/bin/env python' %(installdir)s/*.py", + "chmod +x %(installdir)s/*.py", +] modextrapaths = {'PATH': ['']} diff --git a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb index d1bbd95d59..934d2bd412 100755 --- a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb +++ b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-intel-2017a.eb @@ -18,9 +18,8 @@ source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s' sources = ['%(namelower)s_v%(version)s.zip'] checksums = ['ccd7eecc73327da29230f3e7c7311a4e21b2cfe7282be18fa059ba900fc33116'] -install_cmd = "cp -a * %(installdir)s && chmod +x %(installdir)s/%(namelower)s" - -postinstallcmds = ["sed -i '1 i#!/usr/bin/env perl' %(installdir)s/%(namelower)s"] +install_cmd = "cp -a * %(installdir)s && chmod +x %(installdir)s/%(namelower)s && " +install_cmd += "sed -i '1 i#!/usr/bin/env perl' %(installdir)s/%(namelower)s" dependencies = [ ('FastQC', '0.11.5', '-Java-1.8.0_144', True), -- GitLab From 7ad310a3dc0c681b2f6c64b324a75a513e620e7e Mon Sep 17 00:00:00 2001 From: Oliver Stueker Date: Thu, 7 Sep 2017 11:29:21 -0230 Subject: [PATCH 510/845] address reviewer's comments of PR easybuilders/easybuild-easyconfigs#4912 --- .../g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb | 2 +- .../GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb | 6 ++++-- .../g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb | 2 +- .../g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch | 4 ++++ ...MESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch | 5 +++++ 5 files changed, 15 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb index 3d445caa7f..f5b143f23b 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb @@ -23,7 +23,7 @@ toolchainopts = {'usempi': True} # manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) # rename gamess-current.tar.gz by changing 'current' to the proper version sources = ['gamess-%(version)s.tar.gz'] -checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] +checksums = ['6a6747e147293d7d5a47ec472d095abfb3a22bd86887297d68fbab2e5be18da7'] patches = [ 'GAMESS-US_rungms-slurm.patch', diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb index f227f1556e..fe674c939c 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b-sockets.eb @@ -20,12 +20,11 @@ description = """ The General Atomic and Molecular Electronic Structure System ( toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'usempi': False} -ddi_comm = 'sockets' # manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) # rename gamess-current.tar.gz by changing 'current' to the proper version sources = ['gamess-%(version)s.tar.gz'] -checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] +checksums = ['6a6747e147293d7d5a47ec472d095abfb3a22bd86887297d68fbab2e5be18da7'] patches = [ 'GAMESS-US_rungms-slurm.patch', @@ -37,4 +36,7 @@ patches = [ maxcpus = '1000' maxnodes = '100000' +# Build GAMESS for using TCP/IP sockets instead of MPI: +ddi_comm = 'sockets' + moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb index 5a67a77274..1ce230b90e 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-intel-2016b.eb @@ -23,7 +23,7 @@ toolchainopts = {'usempi': True} # manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) # rename gamess-current.tar.gz by changing 'current' to the proper version sources = ['gamess-%(version)s.tar.gz'] -checksums = ['e9fa2e725ccbd69f4d996ab68bb65ff2'] +checksums = ['6a6747e147293d7d5a47ec472d095abfb3a22bd86887297d68fbab2e5be18da7'] patches = [ 'GAMESS-US_rungms-slurm.patch', diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch index 3287498882..9f23726852 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch @@ -1,3 +1,7 @@ +This patch adds support for GCC 5.4 to the GAMESS-US build scripts. + +Written by Oliver Stueker, ACENET/Compute Canada +Memorial University of Newfoundland, St. John's, Canada --- config.orig 2017-07-18 19:34:32.056678893 +0000 +++ config 2017-07-18 19:48:37.701737302 +0000 @@ -410,6 +410,7 @@ diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch index 0e6126bbf3..61c75f484d 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch @@ -1,3 +1,8 @@ +This patch avoids rungms from failing in cases where PPN (processors per node) +is not defined. + +Written by Oliver Stueker, ACENET/Compute Canada +Memorial University of Newfoundland, St. John's, Canada --- rungms.orig 2017-07-19 16:53:29.325530604 +0000 +++ rungms 2017-07-19 16:55:39.627358245 +0000 @@ -538,6 +538,7 @@ -- GitLab From 16305e4860e5f7d5bf38b785f469fb46e8a16a28 Mon Sep 17 00:00:00 2001 From: Oliver Stueker Date: Thu, 7 Sep 2017 12:13:36 -0230 Subject: [PATCH 511/845] support for recent GCC versions in config and comp scripts --- .../GAMESS-US-20170420-R1_recent-gcc.patch | 54 +++++++++++++++---- 1 file changed, 45 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch index 9f23726852..5c179eb2e6 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1_recent-gcc.patch @@ -1,56 +1,92 @@ -This patch adds support for GCC 5.4 to the GAMESS-US build scripts. +Include support for recent GCC versions in config and comp scripts. Written by Oliver Stueker, ACENET/Compute Canada Memorial University of Newfoundland, St. John's, Canada --- config.orig 2017-07-18 19:34:32.056678893 +0000 -+++ config 2017-07-18 19:48:37.701737302 +0000 -@@ -410,6 +410,7 @@ ++++ config 2017-09-07 12:06:45.507029663 +0000 +@@ -410,6 +410,13 @@ case 5.1: case 5.2: case 5.3: + case 5.4: ++ case 6.1: ++ case 6.2: ++ case 6.3: ++ case 6.4: ++ case 7.1: ++ case 7.2: echo " Good, the newest gfortrans can compile REAL*16 data type." breaksw default: -@@ -810,6 +811,7 @@ +@@ -810,6 +817,13 @@ case 5.1: case 5.2: case 5.3: + case 5.4: ++ case 6.1: ++ case 6.2: ++ case 6.3: ++ case 6.4: ++ case 7.1: ++ case 7.2: echo " Good, the newest gfortrans can compile REAL*16 data type." breaksw default: --- comp.orig 2017-07-19 11:55:05.490262037 +0000 -+++ comp 2017-07-19 11:52:47.986565565 +0000 -@@ -1593,6 +1593,7 @@ ++++ comp 2017-09-07 12:06:45.507029663 +0000 +@@ -1593,6 +1593,13 @@ case 5.1: case 5.2: case 5.3: + case 5.4: ++ case 6.1: ++ case 6.2: ++ case 6.3: ++ case 6.4: ++ case 7.1: ++ case 7.2: if ($MODULE == cosmo) set OPT='-O0' if ($MODULE == dcscf) set OPT='-O0' if ($MODULE == tddgrd) set OPT='-O0' -@@ -1823,6 +1824,7 @@ +@@ -1823,6 +1830,13 @@ case 5.1: case 5.2: case 5.3: + case 5.4: ++ case 6.1: ++ case 6.2: ++ case 6.3: ++ case 6.4: ++ case 7.1: ++ case 7.2: if ($MODULE == cosmo) set OPT='-O0' # same issue as seen in 4.6 if ($MODULE == dcscf) set OPT='-O0' # exam44, continues from 4.7 if ($MODULE == tddgrd) set OPT='-O0' # exam41, continues from 4.6 -@@ -2074,6 +2076,7 @@ +@@ -2074,6 +2088,13 @@ case 5.1: case 5.2: case 5.3: + case 5.4: ++ case 6.1: ++ case 6.2: ++ case 6.3: ++ case 6.4: ++ case 7.1: ++ case 7.2: if ($MODULE == cosmo) set OPT='-O0' if ($MODULE == dcscf) set OPT='-O0' if ($MODULE == tddgrd) set OPT='-O0' -@@ -2191,6 +2194,7 @@ +@@ -2191,6 +2212,13 @@ case 5.1: case 5.2: case 5.3: + case 5.4: ++ case 6.1: ++ case 6.2: ++ case 6.3: ++ case 6.4: ++ case 7.1: ++ case 7.2: if ($MODULE == cosmo) set OPT='-O0' if ($MODULE == dcscf) set OPT='-O0' if ($MODULE == tddgrd) set OPT='-O0' -- GitLab From 8d7e0d76a36d9f6829ed618af07e85af169f2bbd Mon Sep 17 00:00:00 2001 From: Oliver Stueker Date: Thu, 7 Sep 2017 15:04:31 -0230 Subject: [PATCH 512/845] GAMESS-US: removing easyconfig for FOSS toolchain It makes problems as discussed at: https://github.com/easybuilders/easybuild-easyconfigs/pull/4912#issuecomment-327832302 --- .../GAMESS-US-20170420-R1-foss-2016b.eb | 39 ------------------- 1 file changed, 39 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb deleted file mode 100644 index f5b143f23b..0000000000 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20170420-R1-foss-2016b.eb +++ /dev/null @@ -1,39 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild -# -# Copyright:: Copyright 2012-2017 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, -# Ghent University / The Francis Crick Institute -# -# Authors:: -# * Kenneth Hoste -# * Ward Poelmans -# * Oliver Stueker -# License:: MIT/GPL -## -name = 'GAMESS-US' -version = '20170420-R1' - -homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' -description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) - is a general ab initio quantum chemistry package. """ - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'usempi': True} - -# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) -# rename gamess-current.tar.gz by changing 'current' to the proper version -sources = ['gamess-%(version)s.tar.gz'] -checksums = ['6a6747e147293d7d5a47ec472d095abfb3a22bd86887297d68fbab2e5be18da7'] - -patches = [ - 'GAMESS-US_rungms-slurm.patch', - 'GAMESS-US-20170420-R1_rungms_fix_PPN_not_initialized.patch', - 'GAMESS-US-20170420-R1_recent-gcc.patch', -] - -# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes -# it's OK if these values are larger than what your system provides -maxcpus = '1000' -maxnodes = '100000' - -moduleclass = 'chem' -- GitLab From 097208970272fbca3b4d01277c16c6c4f82709df Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 7 Sep 2017 20:16:48 -0500 Subject: [PATCH 513/845] CMakeversion/patchname/patchchecksum --- .../c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ .../m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb | 10 +++-- 2 files changed, 48 insertions(+), 3 deletions(-) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3fbbcb5eaa --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb index 3845c5050b..7ee8221276 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-GCCcore-6.4.0.eb @@ -19,14 +19,18 @@ source_urls = [ 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', ] sources = [SOURCELOWER_TAR_GZ] -checksums = ['76faebe03f6c963127dbb73c13eab58c9a3faeae48779f049066a21c087c5db2'] # We use 32bit for indices and 64bit for content -patches = ['METIS-5.1.0-use-doubles.patch'] +patches = ['%(name)s-%(version)s-use-doubles.patch'] + +checksums = [ + '76faebe03f6c963127dbb73c13eab58c9a3faeae48779f049066a21c087c5db2', # source + '7e38a3ec8f2b8e3d189239bade5b28c0dd1c564485050109164fa71a6a767c67', # patch +] builddependencies = [ ('binutils', '2.28'), - ('CMake', '3.8.2'), + ('CMake', '3.9.1'), ] configopts = ['', 'shared=1'] -- GitLab From 08776789eb88f71bd189a25c4e62879583db9a82 Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Thu, 7 Sep 2017 20:27:33 -0500 Subject: [PATCH 514/845] update CMake ver --- .../c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ .../d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb | 2 +- 2 files changed, 42 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..3fbbcb5eaa --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb index ed9c7f458e..0209b2249c 100644 --- a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-GCCcore-6.4.0.eb @@ -18,7 +18,7 @@ checksums = ['af667887bd7a87dc0dbf9ac8d86c96b552dfb8ca9c790ed1cbffaa6131573f6b'] builddependencies = [ ('binutils', '2.28'), ('Bison', '3.0.4'), - ('CMake', '3.8.2'), + ('CMake', '3.9.1'), ('flex', '2.6.4'), ('pkg-config', '0.29.2'), ] -- GitLab From 81be4f4e503de5246b4bc76a74025e5eb0182aa2 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Fri, 8 Sep 2017 16:26:37 +0800 Subject: [PATCH 515/845] prepare release notes for eb340 --- RELEASE_NOTES | 43 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index e766c8da3c..c52846e489 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,6 +6,49 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 7,313 easyconfig files, for 1,262 different software packages, 25 different (compiler) toolchains, 13 software bundles and 1 meta-package. +v3.4.0 (September 8th 2017) +--------------------------- + +feature release +- added easyconfigs for foss/2017b and intel/2017b common toolchains (#4768), (#4618) +- added example easyconfig files for 31 new software packages: + - BAMM (#4650), BamM (#4650), bcl2fastq2 (#4902), CGNS (#5078), CLAPACK (#5096), CLISP (#4926), cadaver (#4873), destiny (#5009), GroopM (#4650), Lucene-Geo-Gazetteer (#5064), libffcall (#4850), libsigsegv (#4840), MERCKX (#5056), minimap2 (#4991), ncompress (#4852), OpenNLP (#5059), OpenRefine (#5058), PHAST (#5096), PYTHIA (#5083), ParallelIO (#5071), PnetCDF (#5071), plotly (#5010), QML (#5101), Quorum (#5095), Rcorrector (#5095), SCnorm (#5008), sratoolkit (#2715), Shannon (#5095), Tika (#5063), UNAFold (#4997), VERSE (#4843) +- added additional easyconfigs for various supported software packages, including: + - ART 2016.06.05, Armadillo 7.950.1, Autoconf 2.68, Autoconf 2.69, Automake 1.11.3, Automake 1.15.1, Autotools 20170619, ant 1.10.1, BAMM 2.5.0, BEDTools 2.26.0, BFAST 0.7.0a, BLAST+ 2.6.0, BWA 0.7.12, BWA 0.7.15, BWA 0.7.15, BWA 0.7.16a, BWA 0.7.16a, BamM 1.7.3, Biopython 1.70, Bison 3.0.4, Blitz++ 0.10, Blosc 1.12.1, Blosc 1.12.1, Boost 1.65.0, Bowtie 1.1.2, Bowtie 1.2.1.1, Bowtie2 2.3.2, Bowtie2 2.3.2, bcl2fastq2 2.19.1, binutils 2.29, binutils 2.29.eb, byacc 20170709, bzip2 1.0.6, CD HIT, CFITSIO 3.41, CGNS 3.3.1, CLAPACK 3.2.1, CLISP 2.49, CMake 3.9.1, CMake 3.9.1, CMake 3.9.1.eb, CVXOPT 1.1.9, CppUnit 1.12.1, Cython 0.25.2, cURL 7.55.1, cadaver 0.23.3, cairo 1.14.10, cutadapt 1.14, DB 6.2.32, DBus 1.10.20, destiny 2.5.6, EasyBuild 3.3.1.eb, Eigen 3.3.4.eb, eudev 3.2.2, expat 2.2.4, FDS 6.5.3, FFTW 3.3.6, FastQC 0.11.5, FreeXL 1.0.3, flex 2.6.4, fontconfig 2.12.4, foss 2017b.eb, freetype 2.8, GAMESS US, GAMESS US, GATK 3.8, GCC 7.2.0, GCCcore 7.2.0.eb, GLib 2.52.0, GLib 2.53.5, GMP 6.1.2, GObject Introspection, GObject Introspection, GROMACS 2016.3, GSL 2.4, Gdk Pixbuf, GroopM 0.3.4, Guile 2.2.2, gc 7.6.0, gettext 0.19.8.1, gompi 2017b.eb, gperf 3.1, gzip 1.8, HDF 4.2.13, HDF5 1.10.1, HDF5 1.8.19, HDF5 1.8.19, HPL 2.2, HPL 2.2, HPL 2.2, HTSeq 0.9.1, Hadoop 2.6.0, h5py 2.7.0, h5py 2.7.0, h5py 2.7.0, h5py 2.7.0, help2man 1.47.4, htop 2.0.1.eb, hwloc 1.11.7, I TASSER, icc 2017.4.196, iccifort 2017.4.196, ifort 2017.4.196, iimpi 2017b.eb, imkl 2017.3.196, imkl 2017.3.196, impi 2017.3.196, intel 2017b.eb, iomkl 2017b.eb, iompi 2017b.eb, JAGS 4.2.0, JUnit 4.12, JasPer 2.0.12, Java 1.8.0_141.eb, Java 1.8.0_144.eb, Jellyfish 2.2.6, kallisto 0.43.1, LLVM 4.0.1, LZO 2.10, LibUUID 1.0.3, LittleCMS 2.8, Lucene Geo, libGLU 9.0.0, libcerf 1.5, libdrm 2.4.76, libevent 2.1.8, libffcall 1.13, libffi 3.2.1, libgd 2.2.4, libjpeg turbo, libjpeg turbo, libpng 1.6.32, libpthread stubs, libreadline 7.0, libsigsegv 2.11, libsodium 1.0.13, libsodium 1.0.13, libspatialindex 1.8.5, libtool 2.4.6, libunistring 0.9.7, libxml2 2.9.4, libyaml 0.1.7, M4 1.4.18, MATLAB 2013b.eb, MERCKX 20170330, MPFR 3.1.5, MRtrix 3.0_RC2, Mako 1.0.6, Mathematica 11.1.1.eb, Maven 3.5.0.eb, Mesa 17.0.2, Mesquite 2.3.0, matplotlib 2.0.2, matplotlib 2.0.2, mdtest 1.9.3, minimap2 2.0rc1, muParser 2.2.5, NASM 2.13.01, NASM 2.13.01, NLTK 3.2.4, NWChem 6.6.revision27746, ncompress 4.2.4.4, ncurses 6.0, netCDF 4.4.1.1, netcdf4 python, nettle 3.3, nettle 3.3, numactl 2.0.11, ORCA 4.0.1, OpenBLAS 0.2.20, OpenMPI 2.1.1, OpenMPI 2.1.1, OpenNLP 1.8.1.eb, OpenPGM 5.2.122, OpenPGM 5.2.122, OpenRefine 2.7, PAPI 5.5.1, PCRE 8.40, PCRE 8.41, PCRE 8.41, PHAST 1.4, PIL 1.1.7, PYTHIA 8.226, ParallelIO 2.2.2a, Perl 5.24.1, Perl 5.26.0, Perl 5.26.0, PnetCDF 1.8.1, PyTables 3.3.0, PyZMQ 16.0.2, Pysam 0.10.0, Pysam 0.8.4, Python 2.7.13, Python 3.6.1, parallel 20170822, picard 2.10.1, picard 2.6.0, pigz 2.3.4, pixman 0.34.0, pkg config, pkgconfig 1.2.2, pkgconfig 1.2.2, plotly 4.7.1, QML 0.2.10, Qhull 2015.2, Qt 4.8.7, Quorum 1.1.1, ROOT 6.10.04, Rcorrector 1.0.2, rjags 4, SAMtools 1.2, SAMtools 1.3.1, SAMtools 1.5, SCnorm 0.99.7, SOAPdenovo Trans, SPAdes 3.10.1, SQLite 3.20.1, SRA Toolkit, SRA Toolkit, ScaLAPACK 2.0.2, Seurat 1.4.0.16, Shannon 20170511, Siesta 4.0.1, Siesta 4.1, Singularity 2.3.1, Spark 2.2.0, StringTie 1.3.3, Szip 2.1.1, Szip 2.1.1, snappy 1.1.6.eb, Tcl 8.6.7, Tika 1.16.eb, Trim_Galore 0.4.4, Trinity 2.4.0, tbb 2017_U6, texinfo 6.4, UNAFold 3.8, util linux, util linux, util linux, util linux, VERSE 0.1.5, Voro++ 0.4.6, vsc mympirun, XGBoost 0.6a2, XZ 5.2.3, Xerces C++, x264 20170721, xarray 0.9.6, Yasm 1.3.0, ZeroMQ 4.2.2, zlib 1.2.11 +- minor enhancements, including: + - added Rmpi patch file for R built with intel toolchains incl. impi 5.x) (#4623) + - use single-line description in setup.py (#4881) + - Updating deprecated PLINK urls (#4920) + - rename CLISP patch + add upstream ref + minor style cleanups in easyconfig (#4986) + - add required zlib dependency for util-linux 2.29.2 (#4900) + - also add checksums to Perl 5.24.1 easyconfig using intel/2017a (#4992) + - add zlib as depedency to recent util-linux easyconfigs (#4998) + - add additional extensions for R 3.4.0 and Bioconductor 3.5 bundle (#5007) + - add SC3 extension into bundle for Bioconductor 3.5 (+ dep extesions in R easyconfig) (#5028) + - add mpath as extension for R 3.4.0 (#5029) + - remove superfluous $CPATH update in GLib 2.44.0 easyconfig (#5053) + - include timereg as extension in R 3.4.0 easyconfig (#5062) + - update ncurses to not build a separate libtinfo but provide a soft link instead. Force linking to ncurses in libreadline (#5067) + - bump version for various easyconfigs that use GCCcore/6.4.0 (#5073) + - remove bare Python easyconfig using GCCcore/6.4.0 toolchain + easyconfigs that require it (#5075) + - bump version for libyaml, SQLite & Tcl easyconfigs that use GCCcore/6.4.0 (#5076) + - add peperr extension for R 3.4.0 (#5079) + - include Autotools as build dep for netCDF (#5077) + - add check to see whether binutils is included as build dep when GCCore toolchain is used (#5084) + - update Tesla-Deployment-Kit-5.319.43.eb (#5018) +- various bug fixes, including: + - fix version and source for Seurat, add extensions required by Seurat in R 3.4.0 easyconfig (#4889) + - use modextrapaths instead of modextravars in OpenMM easyconfig (#4903) + - fix moduleclass for Cookiecutter (#4947) + - also fix URLs in PLINK-1.07-x86_64.eb (#5006) + - iompi: OpenMPI dependency must come after icc/ifort (#5024) + - fix typo in comment in util-linux easyconfigs & add SHA256 checksums (#5052) + - avoid that /Users/kehoste/.m2 is abused by Maven when installing OpenNLP (#5061) + - linking to ncurses was not done correctly (#5074) + - iomkl toolchain matching on intel/foss 2017b (#5097) + - add missing binutils build dep for texinfo (#5099) + + v3.3.1 (July 12th 2017) ----------------------- -- GitLab From 7bc3456672572650859ec00cbb6eb6bcb84d5c8d Mon Sep 17 00:00:00 2001 From: Jack Perdue Date: Fri, 8 Sep 2017 06:11:02 -0500 Subject: [PATCH 516/845] fix homepage --- .../easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb index affa39b4de..1c99ca060b 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.3-GCCcore-6.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'sparsehash' version = '2.0.3' -homepage = 'https://code.google.com/p/sparsehash/' +homepage = 'https://github.com/sparsehash/sparsehash' description = """ An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! -- GitLab From 41ba14f7a063d960807336283bbaca77d0f141e4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 8 Sep 2017 21:36:18 +0200 Subject: [PATCH 517/845] bump version to 3.4.0 + minor edits in release notes --- RELEASE_NOTES | 57 +++++++++++++++++++++++---------------------------- setup.py | 2 +- 2 files changed, 27 insertions(+), 32 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index c52846e489..898568a4e3 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,49 +3,44 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,313 easyconfig files, for 1,262 different software packages, +The latest version of easybuild-easyconfig provides 7,566 easyconfig files, for 1,293 different software packages, 25 different (compiler) toolchains, 13 software bundles and 1 meta-package. -v3.4.0 (September 8th 2017) ---------------------------- +v3.4.0 (September 10th 2017) +---------------------------- feature release - added easyconfigs for foss/2017b and intel/2017b common toolchains (#4768), (#4618) +- added new easyconfigs for existing toolchains: + - iomkl/2017b (#5097) - added example easyconfig files for 31 new software packages: - - BAMM (#4650), BamM (#4650), bcl2fastq2 (#4902), CGNS (#5078), CLAPACK (#5096), CLISP (#4926), cadaver (#4873), destiny (#5009), GroopM (#4650), Lucene-Geo-Gazetteer (#5064), libffcall (#4850), libsigsegv (#4840), MERCKX (#5056), minimap2 (#4991), ncompress (#4852), OpenNLP (#5059), OpenRefine (#5058), PHAST (#5096), PYTHIA (#5083), ParallelIO (#5071), PnetCDF (#5071), plotly (#5010), QML (#5101), Quorum (#5095), Rcorrector (#5095), SCnorm (#5008), sratoolkit (#2715), Shannon (#5095), Tika (#5063), UNAFold (#4997), VERSE (#4843) + - BAMM (#4650), BamM (#4650), bcl2fastq2 (#4902), CGNS (#5078), CLAPACK (#5096), CLISP (#4926, #4986), + cadaver (#4873), destiny (#5009), GroopM (#4650), Lucene-Geo-Gazetteer (#5064), libffcall (#4850), + libsigsegv (#4840), MERCKX (#5056), minimap2 (#4991), ncompress (#4852), OpenNLP (#5059, #5061), + OpenRefine (#5058), PHAST (#5096), PYTHIA (#5083), ParallelIO (#5071), PnetCDF (#5071), plotly (#5010), + QML (#5101), Quorum (#5095), Rcorrector (#5095), SCnorm (#5008), SOAPdenovo-Trans (#5095), Shannon (#5095), + Tika (#5063), UNAFold (#4997), VERSE (#4843) - added additional easyconfigs for various supported software packages, including: - - ART 2016.06.05, Armadillo 7.950.1, Autoconf 2.68, Autoconf 2.69, Automake 1.11.3, Automake 1.15.1, Autotools 20170619, ant 1.10.1, BAMM 2.5.0, BEDTools 2.26.0, BFAST 0.7.0a, BLAST+ 2.6.0, BWA 0.7.12, BWA 0.7.15, BWA 0.7.15, BWA 0.7.16a, BWA 0.7.16a, BamM 1.7.3, Biopython 1.70, Bison 3.0.4, Blitz++ 0.10, Blosc 1.12.1, Blosc 1.12.1, Boost 1.65.0, Bowtie 1.1.2, Bowtie 1.2.1.1, Bowtie2 2.3.2, Bowtie2 2.3.2, bcl2fastq2 2.19.1, binutils 2.29, binutils 2.29.eb, byacc 20170709, bzip2 1.0.6, CD HIT, CFITSIO 3.41, CGNS 3.3.1, CLAPACK 3.2.1, CLISP 2.49, CMake 3.9.1, CMake 3.9.1, CMake 3.9.1.eb, CVXOPT 1.1.9, CppUnit 1.12.1, Cython 0.25.2, cURL 7.55.1, cadaver 0.23.3, cairo 1.14.10, cutadapt 1.14, DB 6.2.32, DBus 1.10.20, destiny 2.5.6, EasyBuild 3.3.1.eb, Eigen 3.3.4.eb, eudev 3.2.2, expat 2.2.4, FDS 6.5.3, FFTW 3.3.6, FastQC 0.11.5, FreeXL 1.0.3, flex 2.6.4, fontconfig 2.12.4, foss 2017b.eb, freetype 2.8, GAMESS US, GAMESS US, GATK 3.8, GCC 7.2.0, GCCcore 7.2.0.eb, GLib 2.52.0, GLib 2.53.5, GMP 6.1.2, GObject Introspection, GObject Introspection, GROMACS 2016.3, GSL 2.4, Gdk Pixbuf, GroopM 0.3.4, Guile 2.2.2, gc 7.6.0, gettext 0.19.8.1, gompi 2017b.eb, gperf 3.1, gzip 1.8, HDF 4.2.13, HDF5 1.10.1, HDF5 1.8.19, HDF5 1.8.19, HPL 2.2, HPL 2.2, HPL 2.2, HTSeq 0.9.1, Hadoop 2.6.0, h5py 2.7.0, h5py 2.7.0, h5py 2.7.0, h5py 2.7.0, help2man 1.47.4, htop 2.0.1.eb, hwloc 1.11.7, I TASSER, icc 2017.4.196, iccifort 2017.4.196, ifort 2017.4.196, iimpi 2017b.eb, imkl 2017.3.196, imkl 2017.3.196, impi 2017.3.196, intel 2017b.eb, iomkl 2017b.eb, iompi 2017b.eb, JAGS 4.2.0, JUnit 4.12, JasPer 2.0.12, Java 1.8.0_141.eb, Java 1.8.0_144.eb, Jellyfish 2.2.6, kallisto 0.43.1, LLVM 4.0.1, LZO 2.10, LibUUID 1.0.3, LittleCMS 2.8, Lucene Geo, libGLU 9.0.0, libcerf 1.5, libdrm 2.4.76, libevent 2.1.8, libffcall 1.13, libffi 3.2.1, libgd 2.2.4, libjpeg turbo, libjpeg turbo, libpng 1.6.32, libpthread stubs, libreadline 7.0, libsigsegv 2.11, libsodium 1.0.13, libsodium 1.0.13, libspatialindex 1.8.5, libtool 2.4.6, libunistring 0.9.7, libxml2 2.9.4, libyaml 0.1.7, M4 1.4.18, MATLAB 2013b.eb, MERCKX 20170330, MPFR 3.1.5, MRtrix 3.0_RC2, Mako 1.0.6, Mathematica 11.1.1.eb, Maven 3.5.0.eb, Mesa 17.0.2, Mesquite 2.3.0, matplotlib 2.0.2, matplotlib 2.0.2, mdtest 1.9.3, minimap2 2.0rc1, muParser 2.2.5, NASM 2.13.01, NASM 2.13.01, NLTK 3.2.4, NWChem 6.6.revision27746, ncompress 4.2.4.4, ncurses 6.0, netCDF 4.4.1.1, netcdf4 python, nettle 3.3, nettle 3.3, numactl 2.0.11, ORCA 4.0.1, OpenBLAS 0.2.20, OpenMPI 2.1.1, OpenMPI 2.1.1, OpenNLP 1.8.1.eb, OpenPGM 5.2.122, OpenPGM 5.2.122, OpenRefine 2.7, PAPI 5.5.1, PCRE 8.40, PCRE 8.41, PCRE 8.41, PHAST 1.4, PIL 1.1.7, PYTHIA 8.226, ParallelIO 2.2.2a, Perl 5.24.1, Perl 5.26.0, Perl 5.26.0, PnetCDF 1.8.1, PyTables 3.3.0, PyZMQ 16.0.2, Pysam 0.10.0, Pysam 0.8.4, Python 2.7.13, Python 3.6.1, parallel 20170822, picard 2.10.1, picard 2.6.0, pigz 2.3.4, pixman 0.34.0, pkg config, pkgconfig 1.2.2, pkgconfig 1.2.2, plotly 4.7.1, QML 0.2.10, Qhull 2015.2, Qt 4.8.7, Quorum 1.1.1, ROOT 6.10.04, Rcorrector 1.0.2, rjags 4, SAMtools 1.2, SAMtools 1.3.1, SAMtools 1.5, SCnorm 0.99.7, SOAPdenovo Trans, SPAdes 3.10.1, SQLite 3.20.1, SRA Toolkit, SRA Toolkit, ScaLAPACK 2.0.2, Seurat 1.4.0.16, Shannon 20170511, Siesta 4.0.1, Siesta 4.1, Singularity 2.3.1, Spark 2.2.0, StringTie 1.3.3, Szip 2.1.1, Szip 2.1.1, snappy 1.1.6.eb, Tcl 8.6.7, Tika 1.16.eb, Trim_Galore 0.4.4, Trinity 2.4.0, tbb 2017_U6, texinfo 6.4, UNAFold 3.8, util linux, util linux, util linux, util linux, VERSE 0.1.5, Voro++ 0.4.6, vsc mympirun, XGBoost 0.6a2, XZ 5.2.3, Xerces C++, x264 20170721, xarray 0.9.6, Yasm 1.3.0, ZeroMQ 4.2.2, zlib 1.2.11 + - Boost 1.65.0, binutils 2.29, GAMESS-US 20170420-R1, GCC(core) 7.2.0, gzip 1.8, HDF5 1.8.19, LLVM 4.0.1, + MRtrix 3.0_RC2, Perl 5.26.0, ROOT 6.10.04, Spark 2.2.0 - minor enhancements, including: - - added Rmpi patch file for R built with intel toolchains incl. impi 5.x) (#4623) - - use single-line description in setup.py (#4881) - - Updating deprecated PLINK urls (#4920) - - rename CLISP patch + add upstream ref + minor style cleanups in easyconfig (#4986) - - add required zlib dependency for util-linux 2.29.2 (#4900) - - also add checksums to Perl 5.24.1 easyconfig using intel/2017a (#4992) - - add zlib as depedency to recent util-linux easyconfigs (#4998) - - add additional extensions for R 3.4.0 and Bioconductor 3.5 bundle (#5007) - - add SC3 extension into bundle for Bioconductor 3.5 (+ dep extesions in R easyconfig) (#5028) - - add mpath as extension for R 3.4.0 (#5029) - - remove superfluous $CPATH update in GLib 2.44.0 easyconfig (#5053) - - include timereg as extension in R 3.4.0 easyconfig (#5062) - - update ncurses to not build a separate libtinfo but provide a soft link instead. Force linking to ncurses in libreadline (#5067) - - bump version for various easyconfigs that use GCCcore/6.4.0 (#5073) - - remove bare Python easyconfig using GCCcore/6.4.0 toolchain + easyconfigs that require it (#5075) - - bump version for libyaml, SQLite & Tcl easyconfigs that use GCCcore/6.4.0 (#5076) - - add peperr extension for R 3.4.0 (#5079) - - include Autotools as build dep for netCDF (#5077) - - add check to see whether binutils is included as build dep when GCCore toolchain is used (#5084) - - update Tesla-Deployment-Kit-5.319.43.eb (#5018) + - add checksums to Perl 5.24.1 easyconfigs (#4973, #4992) + - add additional extensions for R 3.4.0 and Bioconductor 3.5 bundle (#5007, #5028, #5029, #5062, #5079) + - also define $INCLUDEPATH and $LIBRARY_PATH in Tesla-Deployment-Kit easyconfig (#5018) + - add check to see whether binutils is included as build dep when GCCcore toolchain is used (#5084) - various bug fixes, including: - - fix version and source for Seurat, add extensions required by Seurat in R 3.4.0 easyconfig (#4889) + - added Rmpi patch file for R built with intel toolchains incl. impi 5.x (#4623) + - use single-line description in setup.py (#4881) + - fix version and source for Seurat + add extensions required by Seurat in R 3.4.0 easyconfig (#4889) + - add zlib as dependency to util-linux easyconfigs (#4900, #4998) - use modextrapaths instead of modextravars in OpenMM easyconfig (#4903) + - update deprecated PLINK urls (#4920, #5006) - fix moduleclass for Cookiecutter (#4947) - - also fix URLs in PLINK-1.07-x86_64.eb (#5006) - - iompi: OpenMPI dependency must come after icc/ifort (#5024) + - fix order of OpenMPI dependency in iomkl easyconfig, must come after icc/ifort (#5024) - fix typo in comment in util-linux easyconfigs & add SHA256 checksums (#5052) - - avoid that /Users/kehoste/.m2 is abused by Maven when installing OpenNLP (#5061) - - linking to ncurses was not done correctly (#5074) - - iomkl toolchain matching on intel/foss 2017b (#5097) + - remove superfluous $CPATH update in GLib 2.44.0 easyconfig (#5053) + - update ncurses to not build a separate libtinfo but provide a soft link instead + force linking to ncurses in libreadline (#5067, #5074) + - include Autotools as build dep for netCDF (#5077) - add missing binutils build dep for texinfo (#5099) diff --git a/setup.py b/setup.py index 49f7189df7..a34f7bed38 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.4.0.dev0' +VERSION = '3.4.0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 7c4a16187971e955d427f7a7f6c3b5504b500368 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 10 Sep 2017 23:18:15 +0200 Subject: [PATCH 518/845] bump version to v3.4.0 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index a34f7bed38..df6b66c143 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.4.0' +VERSION = '3.5.0.dev0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 0bfc05fea47cefb8b7a68e580614c2a3b7143763 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 10 Sep 2017 23:25:38 +0200 Subject: [PATCH 519/845] adding easyconfigs: EasyBuild-3.4.0.eb --- .../e/EasyBuild/EasyBuild-3.4.0.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.0.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.0.eb new file mode 100644 index 0000000000..581ed37dc0 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.0.eb @@ -0,0 +1,45 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '3.4.0' + +homepage = 'https://easybuilders.github.io/easybuild' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + # vsc-install + 'https://pypi.python.org/packages/82/ec/19d85d2bb91b562195d00db9ac82d7529904e7eabc0597720966bf74714f/', + # vsc-base + 'https://pypi.python.org/packages/f7/66/1ff7ecc4a93ba37e063f5bfbe395e95a547b1dec73b017c2724f4475a958/', + # easybuild-framework + 'https://pypi.python.org/packages/6a/56/70e72d757112c7ee8f7fceb033f150d423d168b08eeb3f4adaeb02114d70', + # easybuild-easyblocks + 'https://pypi.python.org/packages/47/f2/60674a7bdf4be589ea55c684227bc50a987b64249aedfc725ad85bd9e5d7', + # easybuild-easyconfigs + 'https://pypi.python.org/packages/a2/46/ef2a9d4a89394402d74ef281ffdb2c423bde1131fdc8bf2425513538fbe4', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-install-0.10.26.tar.gz', + 'vsc-base-2.5.8.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] +checksums = [ + 'f97b5ca8b171964c12347e5b814ae5266698f5ea134056f04ff752a1eb562f30', # vsc-install-0.10.26.tar.gz + '7fcd300f842edf4baade7d0b7a3b462ca7dfb2a411a7532694a90127c6646ee2', # vsc-base-2.5.8.tar.gz + '74b952d612c390acd87d367adc813307c35baa49669effd7cd593392922d5b0d', # easybuild-framework-3.4.0.tar.gz + 'd6b1459fbe5b8d8fd66a36e49606959508ec18e23eed281972e1180fccad52ac', # easybuild-easyblocks-3.4.0.tar.gz + 'e9ebe7fb70ddb4fa00ce41ddb92119c3e7ee99ff1422f5f299f958d7da99294e', # easybuild-easyconfigs-3.4.0.tar.gz +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 7ca94b55e44891dc3cee36c638ceda0810f5cd06 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Tue, 12 Sep 2017 09:53:40 +0200 Subject: [PATCH 520/845] Version 1.47 of Stacks using the foss-2016a toolchain. --- .../s/Stacks/Stacks-1.47-foss-2016a.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb new file mode 100644 index 0000000000..e25a704c26 --- /dev/null +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'Stacks' +version = '1.47' + +homepage = 'http://creskolab.uoregon.edu/stacks/' +description = """Stacks is a software pipeline for building loci from short-read sequences, such as those generated on + the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, + for the purpose of building genetic maps and conducting population genomics and phylogeography. +""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('SAMtools', '1.3.1'), + ('sparsehash', '2.0.2'), +] + +sanity_check_paths = { + 'files': [ + 'bin/%s' % binfile for binfile in [ + 'clone_filter', 'denovo_map.pl', 'exec_velvet.pl', 'genotypes', 'index_radtags.pl', 'load_radtags.pl', + 'populations', 'process_shortreads', 'ref_map.pl', 'sstacks', 'ustacks', 'cstacks', + 'export_sql.pl', 'kmer_filter', 'load_sequences.pl', 'process_radtags', 'pstacks', + 'sort_read_pairs.pl', 'stacks_export_notify.pl', + ] + ], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From dbbca5929b6ea4ef91134fb1feaa04b089e791a6 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Tue, 12 Sep 2017 11:04:43 +0200 Subject: [PATCH 521/845] Removed trailing whitespace. --- easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb index e25a704c26..8cb31a6ef1 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.47-foss-2016a.eb @@ -24,7 +24,7 @@ sanity_check_paths = { 'files': [ 'bin/%s' % binfile for binfile in [ 'clone_filter', 'denovo_map.pl', 'exec_velvet.pl', 'genotypes', 'index_radtags.pl', 'load_radtags.pl', - 'populations', 'process_shortreads', 'ref_map.pl', 'sstacks', 'ustacks', 'cstacks', + 'populations', 'process_shortreads', 'ref_map.pl', 'sstacks', 'ustacks', 'cstacks', 'export_sql.pl', 'kmer_filter', 'load_sequences.pl', 'process_radtags', 'pstacks', 'sort_read_pairs.pl', 'stacks_export_notify.pl', ] -- GitLab From 5a06831c96c83aabe8824833acdad8bf079a0222 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Tue, 12 Sep 2017 14:37:38 +0200 Subject: [PATCH 522/845] Fixed github url and added checksum. --- easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb index 187d2f6581..a04c1df219 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -20,6 +20,8 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] sources = [SOURCELOWER_TAR_BZ2] +checksums = ['e549fee04d95c1cf8f46347e9e9bbd93'] + # cURL added for S3 support dependencies = [ ('zlib', '1.2.8'), -- GitLab From df9e602133f24366b456a5db2360f14351dab09a Mon Sep 17 00:00:00 2001 From: John Donners Date: Wed, 13 Sep 2017 22:20:17 +0200 Subject: [PATCH 523/845] adding easyconfigs: NEST-2.12.0-foss-2015b.eb --- .../n/NEST/NEST-2.12.0-foss-2015b.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb new file mode 100644 index 0000000000..700407b571 --- /dev/null +++ b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb @@ -0,0 +1,35 @@ +easyblock = 'CMakeMake' + +name = 'NEST' +version = '2.12.0' + +homepage = 'http://www.nest-simulator.org/' +description = """NEST is a simulator for spiking neural network models + that focuses on the dynamics, size and structure of neural systems rather + than on the exact morphology of individual neurons.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = ['nest-%(version)s.tar.gz'] +source_urls = ['https://github.com/nest/nest-simulator/releases/download/v%(version)s/'] + +dependencies = [ + ('Python', '2.7.9'), + ('libreadline', '6.3'), + ('GSL', '2.1'), + ('libtool', '2.4.6', '-GNU-4.9.3-2.25', True), +] + +configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE' + +builddependencies = [ + ('CMake', '3.4.1'), + ('Doxygen', '1.8.10'), +] + +modextrapaths = { + 'PYTHONPATH': ['lib/python2.7/site-packages'], +} + +moduleclass = 'math' -- GitLab From b823fa7f76654f7d261bd6aad1cbfd5aafcdec1f Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Thu, 14 Sep 2017 13:50:47 +0200 Subject: [PATCH 524/845] A new version of ASE has been released. --- .../ASE-3.14.1-foss-2016b-Python-2.7.12.eb | 27 +++++++++++++++++++ .../ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb | 27 +++++++++++++++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb create mode 100644 easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..d36b53e736 --- /dev/null +++ b/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'ASE' +version = '3.14.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://wiki.fysik.dtu.dk/ase' +description = """ASE is a python package providing an open source Atomic Simulation Environment + in the Python scripting language.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e65862336cf2633b7dfe03e9bddd9bd24e0fb88fa767b059ab6b6aeb35e94af2'] + +dependencies = [ + ('Python', '2.7.12'), + ('matplotlib', '1.5.3', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': ['bin/ase'], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb new file mode 100644 index 0000000000..afcb159063 --- /dev/null +++ b/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'ASE' +version = '3.14.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://wiki.fysik.dtu.dk/ase' +description = """ASE is a python package providing an open source Atomic Simulation Environment + in the Python scripting language.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e65862336cf2633b7dfe03e9bddd9bd24e0fb88fa767b059ab6b6aeb35e94af2'] + +dependencies = [ + ('Python', '3.5.2'), + ('matplotlib', '1.5.3', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': ['bin/ase'], + 'dirs': [], +} + +moduleclass = 'chem' -- GitLab From da24af89d0e5a40bd235899ecddb1e1709d6aacb Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 15 Sep 2017 09:25:26 +0200 Subject: [PATCH 525/845] {bio}[intel/2017a] AUGUSTUS 3.2.3 source_urls corrected (REVIEW) --- .../a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb index e754db2e6d..7f1484baf5 100644 --- a/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb @@ -9,7 +9,10 @@ description = "AUGUSTUS is a program that predicts genes in eukaryotic genomic s toolchain = {'name': 'intel', 'version': '2017a'} -source_urls = ['http://bioinf.uni-greifswald.de/augustus/binaries/'] +source_urls = [ + 'http://bioinf.uni-greifswald.de/augustus/binaries/', + 'http://bioinf.uni-greifswald.de/augustus/binaries/old/', +] sources = [SOURCELOWER_TAR_GZ] patches = ['AUGUSTUS-%(version)s_fix-hardcoding.patch'] -- GitLab From e161671b19ea8fa7fe1e581eac29fb48ef4da16f Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 15 Sep 2017 09:28:47 +0200 Subject: [PATCH 526/845] {bio}[intel/2017a] BUSCO 1.22 (REVIEW) --- .../BUSCO-1.22-intel-2017a-Python-2.7.13.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..dc39f4fd13 --- /dev/null +++ b/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,35 @@ +easyblock = 'Tarball' + +name = 'BUSCO' +version = '1.22' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://busco.ezlab.org/' +description = "BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs" + +toolchain = {'name': 'intel', 'version': '2017a'} + + +source_urls = ['http://busco.ezlab.org/v1/files/'] +sources = ['%(name)s_v%(version)s.tar.gz'] + +checksums = ['86088bbd2128ea04ad9e1b2ebd18201f4c79a48a161ba2593feb12abb8a2d0e2'] + +dependencies = [ + ('Python', '2.7.13'), + ('BLAST+', '2.6.0', versionsuffix), + ('HMMER', '3.1b2'), + ('AUGUSTUS', '3.2.3', versionsuffix), + ('EMBOSS', '6.6.0', '-X11-20170314'), +] + +postinstallcmds = ['chmod +x %(installdir)s/*.py'] + +sanity_check_paths = { + 'files': ['BUSCO_v1.22.py'], + 'dirs': ['sample_data'], +} + +modextrapaths = {'PATH': '.'} + +moduleclass = 'bio' -- GitLab From 17c6b3d457f11c509391b52106959d71550e6d28 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 15 Sep 2017 09:32:41 +0200 Subject: [PATCH 527/845] {bio}[intel/2017a] EMBOSS 6.6.0 w/ X11-20170314 (REVIEW) --- .../EMBOSS-6.6.0-intel-2017a-X11-20170314.eb | 52 +++++++++++++++++++ 1 file changed, 52 insertions(+) create mode 100644 easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb new file mode 100644 index 0000000000..ce07a55a67 --- /dev/null +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb @@ -0,0 +1,52 @@ +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# foss-2016b modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'EMBOSS' +version = '6.6.0' +x11ver = '20170314' +versionsuffix = '-X11-%s' % x11ver + +homepage = 'http://emboss.sourceforge.net/' +description = """EMBOSS is 'The European Molecular Biology Open Software Suite'. + EMBOSS is a free Open Source software analysis package specially developed for + the needs of the molecular biology (e.g. EMBnet) user community.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'ftp://emboss.open-bio.org/pub/EMBOSS/', + 'ftp://emboss.open-bio.org/pub/EMBOSS/old/%(version_major_minor)s.0', +] + +sources = [SOURCE_TAR_GZ] + +patches = ['EMBOSS_disable-embossupdate.patch'] + +dependencies = [ + ('X11', x11ver), + ('libgd', '2.2.4'), + ('libharu', '2.3.0'), + ('Java', '1.8.0_121', '', True), +] + +configopts = " --with-hpdf=$EBROOTLIBHARU " + +# jemboss.jar does not build in a parallel build +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + + ['lib/lib%s.a' % x for x in ['acd', 'ajax', 'ajaxdb', 'ajaxg', 'eexpat', 'ensembl', + 'epcre', 'eplplot', 'ezlib', 'nucleus']] + + ['share/EMBOSS/jemboss/lib/jemboss.jar'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 7eafd9a85ccadff6b812e91deba1a2adc0d62088 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 15 Sep 2017 09:35:29 +0200 Subject: [PATCH 528/845] {bio}[intel/2017a] Infernal 1.1.2 (REVIEW) --- .../i/Infernal/Infernal-1.1.2-intel-2017a.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/i/Infernal/Infernal-1.1.2-intel-2017a.eb diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1.2-intel-2017a.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1.2-intel-2017a.eb new file mode 100644 index 0000000000..735863a602 --- /dev/null +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1.2-intel-2017a.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'Infernal' +version = "1.1.2" + +homepage = 'http://eddylab.org/infernal/' +description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases + for RNA structure and sequence similarities.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://eddylab.org/%(namelower)s'] + +checksums = ['ac8c24f484205cfb7124c38d6dc638a28f2b9035b9433efec5dc753c7e84226b'] + +sanity_check_paths = { + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From e141d2b282488f7c8b8c2014b63f34919a2e4d12 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 15 Sep 2017 09:38:42 +0200 Subject: [PATCH 529/845] {bio}[intel/2017a] khmer 2.1.1 /w Python-2.7.13 (REVIEW) --- .../khmer-2.1.1-intel-2017a-Python-2.7.13.eb | 51 +++++++++++++++++++ 1 file changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..e834dfed99 --- /dev/null +++ b/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,51 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# 1.4.1 modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = "Bundle" + +name = 'khmer' +version = '2.1.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/ged-lab/khmer/' +description = """ In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), +] + +exts_list = [ + ('bz2file', '0.98', { + 'source_urls': ['https://pypi.python.org/packages/source/b/bz2file'], + 'checksums': ['64c1f811e31556ba9931953c8ec7b397488726c63e09a4c67004f43bdd28da88'], + }), + ('screed', '1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/screed'], + 'checksums': ['5db69f8c413a984ade62eb8344a6eb2be26555d74be86d38512673c1cf621b91'], + }), + ('khmer', '2.1.1', { + 'source_urls': ['https://github.com/ged-lab/khmer/archive/'], + 'source_tmpl': 'v%(version)s.tar.gz', + 'checksums': ['39981730c2e08ee183c5ce6ce80cfe2bd6d813cfa37b9ae1f7be0dd1a01dae85'], + }), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["count-median.py", "extract-long-sequences.py", "filter-abund.py", + "load-into-counting.py", "sample-reads-randomly.py"]], + 'dirs': ["lib/python%(pyshortver)s/site-packages/khmer-%(version)s-py%(pyshortver)s-linux-x86_64.egg"], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'bio' -- GitLab From a5dd3efd9382bf07a51b940b38667e7bfef84145 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 15 Sep 2017 11:22:00 +0200 Subject: [PATCH 530/845] Down with PEP8\! --- .../k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb index e834dfed99..92bba843cd 100644 --- a/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/k/khmer/khmer-2.1.1-intel-2017a-Python-2.7.13.eb @@ -28,16 +28,16 @@ exts_list = [ ('bz2file', '0.98', { 'source_urls': ['https://pypi.python.org/packages/source/b/bz2file'], 'checksums': ['64c1f811e31556ba9931953c8ec7b397488726c63e09a4c67004f43bdd28da88'], - }), + }), ('screed', '1.0', { 'source_urls': ['https://pypi.python.org/packages/source/s/screed'], 'checksums': ['5db69f8c413a984ade62eb8344a6eb2be26555d74be86d38512673c1cf621b91'], - }), + }), ('khmer', '2.1.1', { 'source_urls': ['https://github.com/ged-lab/khmer/archive/'], 'source_tmpl': 'v%(version)s.tar.gz', 'checksums': ['39981730c2e08ee183c5ce6ce80cfe2bd6d813cfa37b9ae1f7be0dd1a01dae85'], - }), + }), ] sanity_check_paths = { -- GitLab From 76add53eee7fc90cabc54d84214736603eb7d7e2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 14:18:17 +0200 Subject: [PATCH 531/845] adding easyconfigs: Perl-5.26.0-GCCcore-6.4.0.eb --- .../p/Perl/Perl-5.26.0-GCCcore-6.4.0.eb | 1603 +++++++++++++++++ 1 file changed, 1603 insertions(+) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.26.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.26.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..1024af2eb5 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.26.0-GCCcore-6.4.0.eb @@ -0,0 +1,1603 @@ +name = 'Perl' +version = '5.26.0' + +homepage = 'https://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebe7c66906d4fb55449380ab1b7e004eeef52c38d3443fa301f8e17a1a4cb67f'] + +builddependencies = [('binutils', '2.28')] + +# !! order of extensions is important !! +# extensions updated on August 29th 2017 +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': [ + '0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad', # Config-General-2.63.tar.gz + ], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5', # File-Listing-6.04.tar.gz + ], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c', # ExtUtils-InstallPaths-0.011.tar.gz + ], + }), + ('ExtUtils::Helpers', '0.026', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416', # ExtUtils-Helpers-0.026.tar.gz + ], + }), + ('Test::Harness', '3.39', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '69bd44c81c6e1d2db18e298ecf631852608893ddfddb332a7d55285bbfc51132', # Test-Harness-3.39.tar.gz + ], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c', # ExtUtils-Config-0.008.tar.gz + ], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c', # Module-Build-Tiny-0.039.tar.gz + ], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb', # aliased-0.34.tar.gz + ], + }), + ('Text::Glob', '0.11', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287', # Text-Glob-0.11.tar.gz + ], + }), + ('Regexp::Common', '2017060201', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': [ + 'ee07853aee06f310e040b6bf1a0199a18d81896d3219b9b35c9630d0eb69089b', # Regexp-Common-2017060201.tar.gz + ], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': [ + '423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12', # go-perl-0.15.tar.gz + ], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': [ + 'b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df', # Module-Pluggable-5.2.tar.gz + ], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0', # Test-Fatal-0.014.tar.gz + ], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08', # Test-Warnings-0.026.tar.gz + ], + }), + ('File::ShareDir::Install', '0.11', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8', # File-ShareDir-Install-0.11.tar.gz + ], + }), + ('DateTime::Locale', '1.16', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe', # DateTime-Locale-1.16.tar.gz + ], + }), + ('DateTime::TimeZone', '2.13', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '333d39ccd6b883460409b9113bec43be256c3e763beedfb97b9eb274c9d4e18c', # DateTime-TimeZone-2.13.tar.gz + ], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': [ + '2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5', # Test-Requires-0.10.tar.gz + ], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d', # Module-Implementation-0.09.tar.gz + ], + }), + ('Module::Build', '0.4224', { + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'a6ca15d78244a7b50fdbf27f85c85f4035aa799ce7dd018a0d98b358ef7bc782', # Module-Build-0.4224.tar.gz + ], + }), + ('Module::Runtime', '0.015', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + 'checksums': [ + '67fcfaf4e33072924975675da9004bacc43fff9f61396135b93627cbe38e43c0', # Module-Runtime-0.015.tar.gz + ], + }), + ('Try::Tiny', '0.28', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'f1d166be8aa19942c4504c9111dade7aacb981bc5b3a2a5c5f6019646db8c146', # Try-Tiny-0.28.tar.gz + ], + }), + ('Params::Validate', '1.29', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + '49a68dfb430bea028042479111d19068e08095e5a467e320b7ab7bde3d729733', # Params-Validate-1.29.tar.gz + ], + }), + ('List::MoreUtils', '0.423', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'b4d90b24809b399fda3772a45b1af9e29d89becf8ba4a4f78fa36234e4ed5396', # List-MoreUtils-0.423.tar.gz + ], + }), + ('Exporter::Tiny', '1.000000', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + 'checksums': [ + 'ffdd77d57de099e8f64dd942ef12a00a3f4313c2531f342339eeed2d366ad078', # Exporter-Tiny-1.000000.tar.gz + ], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': [ + '38220d04f02e3a803193c2575a1644cce0b95ad4b95c19eb932b94e2647ef678', # Class-Singleton-1.5.tar.gz + ], + }), + ('DateTime', '1.44', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'a7165a9b1bcef735e76ea44c184ea741840249dd1862b8465f3777cd8f0bd701', # DateTime-1.44.tar.gz + ], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '9a48433f86e08ce18e03526e2982de52162eb909d19735460f07eefcaf463ea6', # File-Find-Rule-Perl-1.15.tar.gz + ], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + 'checksums': [ + '4b23542491af010d44a5c7c861244738acc74ababae6b8838d354dfb19462b5e', # Readonly-2.05.tar.gz + ], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + 'checksums': [ + '9d4de21612253a1d3252ff7657d7e832dcf3cc2a748a8c84f73de618a3a38239', # Git-0.41.tar.gz + ], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + '2d04eb011aa06cee633c367d1f322b8d937020fde5d5393fad6a26c93725c4a8', # Tree-DAG_Node-1.29.tgz + ], + }), + ('Template', '2.27', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc', # Template-Toolkit-2.27.tar.gz + ], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + 'checksums': [ + '3c5e08329106f9cee3ab444b81331c5935f83084a151d88505e7a465da540f41', # FreezeThaw-0.5001.tar.gz + ], + }), + ('DBI', '1.637', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': [ + '2557712593e80142c3b50877e00369b6ce78fa26d44edc42156d81a5cdd26bc6', # DBI-1.637.tar.gz + ], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269', # DBD-SQLite-1.54.tar.gz + ], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '11a815fc45fdf0efabb1822ab77faad8b9eea162572c5f0940c8ed7d56e6b8b8', # Math-Bezier-0.01.tar.gz + ], + }), + ('Archive::Extract', '0.80', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '25cbc2d5626c14d39a0b5e4fe8383941e085c9a7e0aa873d86e81b6e709025f4', # Archive-Extract-0.80.tar.gz + ], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + 'checksums': [ + '445535b3dfab88140c7a0d2776b1e78f254dc7e9c81072d5a01afc95a5db499a', # DBIx-Simple-1.35.tar.gz + ], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + 'checksums': [ + 'f7dbebf65261ed0e5abd0f57052b64d665a1a830bab4c8bbc220f235bd39caf5', # Shell-0.73.tar.gz + ], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '36350e12f58871437ba03391f80a506e447e3c6630cc37d0625bc25ff1c7b4d2', # PathTools-3.62.tar.gz + ], + }), + ('Test::Simple', '1.302086', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '21e4c93c52529a10ef970afcf2cdb5719bcfef5f71af09cad3675fcf021995b1', # Test-Simple-1.302086.tar.gz + ], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + 'checksums': [ + 'a3dc1526f3dde72d3c64ea00007b86ce608cdcd93567cf6e6e42dc10fdc4511d', # Set-Scalar-1.29.tar.gz + ], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': [ + '8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d', # IO-stringy-2.111.tar.gz + ], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '176fa02771f542a4efb1dbc2a4c928e8f4391bf4078473bd6040d8f11adb0ec1', # Encode-Locale-1.05.tar.gz + ], + }), + ('XML::SAX::Base', '1.09', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '66cb355ba4ef47c10ca738bd35999723644386ac853abbeb5132841f5e8a2ad0', # XML-SAX-Base-1.09.tar.gz + ], + }), + ('XML::NamespaceSupport', '1.12', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': [ + '47e995859f8dd0413aa3f22d350c4a62da652e854267aa0586ae544ae2bae5ef', # XML-NamespaceSupport-1.12.tar.gz + ], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '32b04b8e36b6cc4cfc486de2d859d87af5386dd930f2383c49347050d6f5ad84', # XML-SAX-0.99.tar.gz + ], + }), + ('Test::LeakTrace', '0.16', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEEJO'], + 'checksums': [ + '5f089eed915f1ec8c743f6d2777c3ecd0ca01df2f7b9e10038d316952583e403', # Test-LeakTrace-0.16.tar.gz + ], + }), + ('Test::Exception', '0.43', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '156b13f07764f766d8b45a43728f2439af81a3512625438deab783b7883eb533', # Test-Exception-0.43.tar.gz + ], + }), + ('Text::Table', '1.133', { + 'source_tmpl': 'Text-Table-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + 'cd9ee04860d09a19a9d6bd2254a4bf3144ac14a63c08f15a1e28601b4b2f7012', # Text-Table-1.133.tar.gz + ], + }), + ('MIME::Types', '2.13', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': [ + '99c3376357bbe22cc8b6c78f560aa18d81621287695cd629008a6c4e66b77bf8', # MIME-Types-2.13.tar.gz + ], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + 'checksums': [ + '15762fa4e43b41302cff261c7ad75aacdc874f416981f206d783f20acd023adb', # Module-Build-XSUtil-0.16.tar.gz + ], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + 'checksums': [ + '0b1617af218dfab911ba0fbd72210529a246efe140332da77fe3e03d11000117', # Tie-Function-0.02.tar.gz + ], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + 'checksums': [ + # Template-Plugin-Number-Format-1.06.tar.gz + '0865836a1bcbc34d4a0ee34b5ccc14d7b511f1fd300bf390f002dac349539843', + ], + }), + ('HTML::Parser', '3.72', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + 'ec28c7e1d9e67c45eca197077f7cdc41ead1bb4c538c7f02a3296a4bb92f608b', # HTML-Parser-3.72.tar.gz + ], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + 'checksums': [ + 'c36fd2b68d48c2e17417bf2873c78820f3ae02460fdf5976b8eeab887d59e16c', # Date-Handler-1.2.tar.gz + ], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '30f1ec3f2cf9ff66ae96f973333f23c5f558915bb6266881eac7423f52d7c76c', # Params-Util-1.07.tar.gz + ], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + 'checksums': [ + 'ea78d2d743794adc028bc9589538eb867174b4e165d7d8b5f63486e6b828e7e0', # IO-HTML-1.001.tar.gz + ], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + 'checksums': [ + '4571059b7b5d48b7ce52b01389e95d798bf5cf2020523c153ff27b498153c9cb', # libxml-perl-0.08.tar.gz + ], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + 'checksums': [ + '8816f34e9a38e849a10df756030dccf9fe061a196c11ac3faafd7113c929b964', # Class-ISA-0.36.tar.gz + ], + }), + ('URI', '1.72', { + 'source_tmpl': 'URI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '35f14431d4b300de4be1163b0b5332de2d7fbda4f05ff1ed198a8e9330d40a32', # URI-1.72.tar.gz + ], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + 'checksums': [ + '8b481ceedbf0ae4a83effb80581550008bfdd3885ef01145e3733c7097c00a08', # Ima-DBI-0.35.tar.gz + ], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + 'checksums': [ + 'fabb0b8c97e67c9b34b6cc18ed66f6c5e01c55b257dcf007555e0b027d4caf56', # Tie-IxHash-1.23.tar.gz + ], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + 'checksums': [ + '8eb73d591ad767e7cf26def40cffd84833875f1ad51e456960b9ed73dc23641b', # go-db-perl-0.04.tar.gz + ], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + 'c4661b00afb7e53c97ac36e13f34dde43c1a93540a2f4ff97e6182b0c731e4e7', # Class-DBI-SQLite-0.11.tar.gz + ], + }), + ('Pod::POM', '2.01', { + 'source_tmpl': 'Pod-POM-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + '1b50fba9bbdde3ead192beeba0eaddd0c614e3afb1743fa6fff805f57c56f7f4', # Pod-POM-2.01.tar.gz + ], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + 'checksums': [ + '73a7329a86e54a5c29a440382e5803095b58f33129e61a1df0093b4824de9327', # Math-Round-0.07.tar.gz + ], + }), + ('Text::Diff', '1.45', { + 'source_tmpl': 'Text-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + 'e8baa07b1b3f53e00af3636898bbf73aec9a0ff38f94536ede1dbe96ef086f04', # Text-Diff-1.45.tar.gz + ], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'aa12d1a4c0ac260b94d448fa01feba242a8a85cb6cbfdc66432e3b5b468add96', # Log-Message-Simple-0.10.tar.gz + ], + }), + ('IO::Socket::SSL', '2.050', { + 'source_tmpl': 'IO-Socket-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + 'checksums': [ + '54e6716e40df8b1c168d8f54a0b8f215313739bd99dda17adb7c00fe94656692', # IO-Socket-SSL-2.050.tar.gz + ], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'dce28e3932762c2ff92aa52d90405c06e898e81cb7b164ccae8966ae77f1dcab', # Fennec-Lite-0.004.tar.gz + ], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'b4f3f63b80f680a421332d8851ddbe5a8e72fcaa74d5d1d98f3c8cc4a3ece293', # Sub-Uplevel-0.2800.tar.gz + ], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'e7ac289b88d1662e87708d716877ac66a1a8414660996fe58c1db96d834a5375', # Meta-Builder-0.003.tar.gz + ], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + '4bd70d6ca76f6f6ba7e4c618d4ac93b8593a58f1233ccbe18b10f5f204f1d4e4', # Exporter-Declare-0.114.tar.gz + ], + }), + ('Getopt::Long', '2.50', { + 'source_tmpl': 'Getopt-Long-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + 'checksums': [ + '20881adb2b73e83825f9a0a3b141db11b3a555e1d3775b13d81d0481623e4b67', # Getopt-Long-2.50.tar.gz + ], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'bd697dd62aaf26d118e9f0a0813429deb1c544e4501559879b61fcbdfe99fe46', # Log-Message-0.08.tar.gz + ], + }), + ('Mouse', 'v2.4.10', { + 'source_tmpl': 'Mouse-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + 'checksums': [ + 'b995dda1918fcebecff34458b6abd16c06b6a7844572c7293d72a24d18126d14', # Mouse-v2.4.10.tar.gz + ], + }), + ('Test::Version', '2.05', { + 'source_tmpl': 'Test-Version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + '39c0ec02663da0e56962bdafaef6790cf83d12b4d90e8a4cdc971d57d869d63f', # Test-Version-2.05.tar.gz + ], + }), + ('DBIx::Admin::TableInfo', '3.03', { + 'source_tmpl': 'DBIx-Admin-TableInfo-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'a852530f95957a43aa794f2edf5f3fe4ecec35bd20150c38136d4c23d85328b6', # DBIx-Admin-TableInfo-3.03.tgz + ], + }), + ('Net::HTTP', '6.16', { + 'source_tmpl': 'Net-HTTP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + '70c45b6aaf3e9fb1ce30a1fc3cf828cfaee45c5c0bd147b2f617efade1765e78', # Net-HTTP-6.16.tar.gz + ], + }), + ('Test::Deep', '1.127', { + 'source_tmpl': 'Test-Deep-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'b78cfc59c41ba91f47281e2c1d2bfc4b3b1b42bfb76b4378bc88cc37b7af7268', # Test-Deep-1.127.tar.gz + ], + }), + ('Test::Warn', '0.32', { + 'source_tmpl': 'Test-Warn-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BIGJ'], + 'checksums': [ + '2fc516e71f9ef453be22a4619d91eb3f78df414a57dfa0fd745d3bff50bf73d2', # Test-Warn-0.32.tar.gz + ], + }), + ('MRO::Compat', '0.13', { + 'source_tmpl': 'MRO-Compat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '8a2c3b6ccc19328d5579d02a7d91285e2afd85d801f49d423a8eb16f323da4f8', # MRO-Compat-0.13.tar.gz + ], + }), + ('Moo', '2.003002', { + 'source_tmpl': 'Moo-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + 'f3e9741e79baa63e89f5a08706cd80d18c0a5a37e3d898847e002310e06582f1', # Moo-2.003002.tar.gz + ], + }), + ('Hash::Merge', '0.200', { + 'source_tmpl': 'Hash-Merge-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '47f9f03330b7595c94e73bdd17dc6682ba59d1cc89e63f4e319617f4bb122a64', # Hash-Merge-0.200.tar.gz + ], + }), + ('SQL::Abstract', '1.84', { + 'source_tmpl': 'SQL-Abstract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILMARI'], + 'checksums': [ + '655f4aa3d4ea7ca0a7bafb2beff84010d5c77f0ee4413baa0c86456bf6db5e75', # SQL-Abstract-1.84.tar.gz + ], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '68c01d94f005d5ca9c4d55ad2a1bf3a8d034a5fc6db187d91a4c42f3fdc9fc36', # HTML-Form-6.03.tar.gz + ], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + 'checksums': [ + '84ccbddf3894a88a2c2b6be68ff6ef8960037803bb36aa228b31944cfdf6deeb', # File-Copy-Recursive-0.38.tar.gz + ], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '83293737e803b43112830443fb5208ec5208a2e6ea512ed54ef8e4dd2b880827', # Number-Compare-0.03.tar.gz + ], + }), + ('IPC::Run', '0.96', { + 'source_tmpl': 'IPC-Run-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'bbd24ff027e1c232b3dc027562c9f4386da72b76991d30f9f3d4119e87cf4640', # IPC-Run-0.96.tar.gz + ], + }), + ('HTML::Entities::Interpolate', '1.10', { + 'source_tmpl': 'HTML-Entities-Interpolate-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'f15a9df92c282419f7010964aca1ada844ddfae7afc735cd2ba1bb20883e955c', # HTML-Entities-Interpolate-1.10.tgz + ], + }), + ('File::Remove', '1.57', { + 'source_tmpl': 'File-Remove-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + 'b3becd60165c38786d18285f770b8b06ebffe91797d8c00cc4730614382501ad', # File-Remove-1.57.tar.gz + ], + }), + ('YAML::Tiny', '1.70', { + 'source_tmpl': 'YAML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'bbce4b52b5eafdb04e3043975a08dbf394d00b7d2c958adb9d03d9f7e9291255', # YAML-Tiny-1.70.tar.gz + ], + }), + ('Module::Install', '1.18', { + 'source_tmpl': 'Module-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '29068ac33502cec959844c206516c09cc4a847cb57327d41015f605153ca645e', # Module-Install-1.18.tar.gz + ], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '06f82d076501701d78b8dc40b7688507bcc6c58b1beafd559e05bb0644df00a2', # Test-ClassAPI-1.06.tar.gz + ], + }), + ('Test::Most', '0.35', { + 'source_tmpl': 'Test-Most-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OV/OVID'], + 'checksums': [ + '9897a6f4d751598d2ed1047e01c1554b01d0f8c96c45e7e845229782bf6f657f', # Test-Most-0.35.tar.gz + ], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + 'cdb1e0cdf8380fb9b63b44c33ce5afc1068736d55ac5904bf0eaa1efc1c3cefc', # Class-Accessor-0.34.tar.gz + ], + }), + ('Test::Differences', '0.64', { + 'source_tmpl': 'Test-Differences-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + 'checksums': [ + '9f459dd9c2302a0a73e2f5528a0ce7d09d6766f073187ae2c69e603adf2eb276', # Test-Differences-0.64.tar.gz + ], + }), + ('HTTP::Tiny', '0.070', { + 'source_tmpl': 'HTTP-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + '74f385d1e96de887a4df5a222d93afdc7d81ea9ad721a56ff3d8449bb12f7733', # HTTP-Tiny-0.070.tar.gz + ], + }), + ('Package::DeprecationManager', '0.17', { + 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + # Package-DeprecationManager-0.17.tar.gz + '1d743ada482b5c9871d894966e87d4c20edc96931bb949fb2638b000ddd6684b', + ], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '68c1dac2187421f0eb7abf71452a06f190181b8fc4b28ededf5b90296fb943cc', # Digest-SHA1-2.13.tar.gz + ], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86', # TimeDate-2.30.tar.gz + ], + }), + ('version', '0.9918', { + 'source_tmpl': 'version-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + 'checksums': [ + '54175c7ead4e2259c2fb2b83440b821e4287842067227e48fb899b5cae52237b', # version-0.9918.tar.gz + ], + }), + ('Sub::Uplevel', '0.2800', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'b4f3f63b80f680a421332d8851ddbe5a8e72fcaa74d5d1d98f3c8cc4a3ece293', # Sub-Uplevel-0.2800.tar.gz + ], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + 'patches': ['XML-Bare-0.53_icc.patch'], + 'checksums': [ + '865e198e98d904be1683ef5a53a4948f02dabdacde59fc554a082ffbcc5baefd', # XML-Bare-0.53.tar.gz + '7d005e44222a0ce130b8ba4912a869675c0aa9ce4d1b95caba06b683b69f2b20', # XML-Bare-0.53_icc.patch + ], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + 'ea844b9686c94d666d9d444321d764490b2cde2f985c4165b4c2c77665caedc4', # Dist-CheckConflicts-0.11.tar.gz + ], + }), + ('Sub::Name', '0.21', { + 'source_tmpl': 'Sub-Name-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'bd32e9dee07047c10ae474c9f17d458b6e9885a6db69474c7a494ccc34c27117', # Sub-Name-0.21.tar.gz + ], + }), + ('Time::Piece', '1.3201', { + 'source_tmpl': 'Time-Piece-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ES/ESAYM'], + 'checksums': [ + '81dbe694474a13d9683c392edd54bd77b6bd6d20b41433358487b51eb71e31bd', # Time-Piece-1.3201.tar.gz + ], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '3bc72c6d3ff144d73aefb90e9a78d33612d58cf1cd1631ecfb8985ba96da4a59', # Digest-HMAC-1.03.tar.gz + ], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '1c729c1ea63100e878405cda7d66f9adfd3ed4f1d6cacaca0ee9152df728e016', # HTTP-Negotiate-6.01.tar.gz + ], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '8f39901bc580bc3dce69e10415305e4435ff90264c63d29f707b4566460be962', # MIME-Lite-3.030.tar.gz + ], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + 'cd7209a6dfe0a3dc8caffe1aa2233b0e6effec7572d76a7a93feefffe636214e', # Crypt-Rijndael-1.13.tar.gz + ], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'dc49408964fd8b7963859c92e013f0b9f92f74be5a7c2a78e3996279827c10b3', # B-Lint-1.20.tar.gz + ], + }), + ('Canary::Stability', '2012', { + 'source_tmpl': 'Canary-Stability-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + 'checksums': [ + 'fd240b111d834dbae9630c59b42fae2145ca35addc1965ea311edf0d07817107', # Canary-Stability-2012.tar.gz + ], + }), + ('AnyEvent', '7.14', { + 'source_tmpl': 'AnyEvent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + 'checksums': [ + '539358d225bad34b4a64f5217f8c2a707b15e3a28c74120c9dd2270c7cca7d2a', # AnyEvent-7.14.tar.gz + ], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '76cb824a27b6b4e560409fcf6fd5b3bfbbd38b72f1f3d37ed0b54bd9c0baeade', # Object-Accessor-0.48.tar.gz + ], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '3cc7b2a3a7b74b45a059e013f7fd878078500ea4b7269036f84556b022078667', # Data-UUID-1.221.tar.gz + ], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'c1a1d3cedf4a579e3aad89c36f9878a8542b6656dbe71f1581420f49582d7efb', # Test-Pod-1.51.tar.gz + ], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + 'checksums': [ + '1177027025ecb09ee64d9f9f255615c04db5e14f7536c344af632032eb887b0f', # AppConfig-1.71.tar.gz + ], + }), + ('Net::SMTP::SSL', '1.04', { + 'source_tmpl': 'Net-SMTP-SSL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '7b29c45add19d3d5084b751f7ba89a8e40479a446ce21cfd9cc741e558332a00', # Net-SMTP-SSL-1.04.tar.gz + ], + }), + ('XML::Tiny', '2.07', { + 'source_tmpl': 'XML-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + 'checksums': [ + 'ce39fcb53e0fe9f1cbcd86ddf152e1db48566266b70ec0769ef364eeabdd8941', # XML-Tiny-2.07.tar.gz + ], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + 'checksums': [ + 'adb17dac9e36cd011f5243881c9739417fd102fce760f8de4e9be4c7131108e2', # HTML-Tagset-3.20.tar.gz + ], + }), + ('HTML::Tree', '5.06', { + 'source_tmpl': 'HTML-Tree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KE/KENTNL'], + 'checksums': [ + '9c36eb19cbdf9a5906c858948ca51c35bd7561f52cc18c43281acbe57327536e', # HTML-Tree-5.06.tar.gz + ], + }), + ('Devel::GlobalDestruction', '0.14', { + 'source_tmpl': 'Devel-GlobalDestruction-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '34b8a5f29991311468fe6913cadaba75fd5d2b0b3ee3bb41fe5b53efab9154ab', # Devel-GlobalDestruction-0.14.tar.gz + ], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '46b502e7a288d559429891eeb5d979461dd3ecc6a5c491ead85d165b6e03a51e', # WWW-RobotRules-6.02.tar.gz + ], + }), + ('Expect', '1.35', { + 'source_tmpl': 'Expect-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JA/JACOBY'], + 'checksums': [ + '09d92761421decd495853103379165a99efbf452c720f30277602cf23679fd06', # Expect-1.35.tar.gz + ], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + '91946c80d7f4aab0ca4bfedc3bbe0a75b37cab1a29bd7bca3b3b7456d417e9a6', # Term-UI-0.46.tar.gz + ], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + 'checksums': [ + '14c37bc1cbb3f3cdc7d6c13e0f27a859f14cdcfd5ea54a0467a88bc259b0b741', # Net-SNMP-v6.0.1.tar.gz + ], + }), + ('XML::SAX::Writer', '0.57', { + 'source_tmpl': 'XML-SAX-Writer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': [ + '3d61d07ef43b0126f5b4de4f415a256fa859fa88dc4fdabaad70b7be7c682cf0', # XML-SAX-Writer-0.57.tar.gz + ], + }), + ('Statistics::Descriptive', '3.0612', { + 'source_tmpl': 'Statistics-Descriptive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '772413148e5e00efb32f277c4254aa78b9112490a896208dcd0025813afdbf7a', # Statistics-Descriptive-3.0612.tar.gz + ], + }), + ('Class::Load', '0.24', { + 'source_tmpl': 'Class-Load-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '0bb983da46c146534fc77a556d6e40d925142f2eb43103534025ee545265ca36', # Class-Load-0.24.tar.gz + ], + }), + ('LWP::Simple', '6.26', { + 'source_tmpl': 'libwww-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + 'd0c5435275f8638ff36fff8f655ad2ccad1156e66cc47bfacfb9e44fc585b24f', # libwww-perl-6.26.tar.gz + ], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + '319601feec17fae344988a5ee91cfc6a0bcfe742af77dba254724c3268b2a60f', # Time-Piece-MySQL-0.06.tar.gz + ], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + '23d8c5c25768ef1dc0ce53b975796762df0d6e244445d06e48d794886c32d486', # Package-Stash-XS-0.28.tar.gz + ], + }), + ('GD::Graph', '1.54', { + 'source_tmpl': 'GDGraph-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + 'checksums': [ + 'b96f5c10b656c17d16ab65a1777c908297b028d3b6815f6d54b2337f006bfa4f', # GDGraph-1.54.tar.gz + ], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': [ + 'd9f024c8e3637feccdebcf6479b6754b6c92f1209f567feaf0c23818af31ee3c', # Set-Array-0.30.tgz + ], + }), + ('boolean', '0.46', { + 'source_tmpl': 'boolean-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + 'checksums': [ + '95c088085c3e83bf680fe6ce16d8264ec26310490f7d1680e416ea7a118f156a', # boolean-0.46.tar.gz + ], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + 'checksums': [ + '82d659cb16461764fd44d11a9ce9e6a4f5e8767dc1069eb03467c6e55de257f3', # Number-Format-1.75.tar.gz + ], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': [ + '4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59', # Data-Stag-0.14.tar.gz + ], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + '638a57658cb119af1fe5b15e73d47c2544dcfef84af0c6b1b2e97f08202b686c', # Test-NoWarnings-1.04.tar.gz + ], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + 'checksums': [ + '2db1ebb5837b4cb20051c0ee5b733b4453e3137df0a92306034c867621edd7e7', # Crypt-DES-2.07.tar.gz + ], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'cd13b7a0e91e8505a0ce4b25f40fab2c92bb28a99ef0d03da1001d95a32f0291', # Exporter-5.72.tar.gz + ], + }), + ('Class::Inspector', '1.32', { + 'source_tmpl': 'Class-Inspector-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + 'cefadc8b5338e43e570bc43f583e7c98d535c17b196bcf9084bb41d561cc0535', # Class-Inspector-1.32.tar.gz + ], + }), + ('Parse::RecDescent', '1.967015', { + 'source_tmpl': 'Parse-RecDescent-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + 'checksums': [ + '1943336a4cb54f1788a733f0827c0c55db4310d5eae15e542639c9dd85656e37', # Parse-RecDescent-1.967015.tar.gz + ], + }), + ('Carp', '1.38', { + 'source_tmpl': 'Carp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'a5a9ce3cbb959dfefa8c2dd16552567199b286d39b0e55053ca247c038977101', # Carp-1.38.tar.gz + ], + }), + ('XML::XPath', '1.42', { + 'source_tmpl': 'XML-XPath-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + 'checksums': [ + '9e6ac67c2cead5f918a060b8b9ccdbdcaa6d610be8517bba42a96cd56748b512', # XML-XPath-1.42.tar.gz + ], + }), + ('Capture::Tiny', '0.46', { + 'source_tmpl': 'Capture-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + '5d7a6a830cf7f2b2960bf8b8afaac16a537ede64f3023827acea5bd24ca77015', # Capture-Tiny-0.46.tar.gz + ], + }), + ('JSON', '2.94', { + 'source_tmpl': 'JSON-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '12271b5cee49943bbdde430eef58f1fe64ba6561980b22c69585e08fc977dc6d', # JSON-2.94.tar.gz + ], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '543cb2e803ab913d44272c7da6a70bb62c19e467f3b12aaac4c9523259b083d6', # Sub-Exporter-0.987.tar.gz + ], + }), + ('Class::Load::XS', '0.10', { + 'source_tmpl': 'Class-Load-XS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + '5bc22cf536ebfd2564c5bdaf42f0d8a4cee3d1930fc8b44b7d4a42038622add1', # Class-Load-XS-0.10.tar.gz + ], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + 'checksums': [ + 'cfb1768c24f55208e87405b17f537f0f303fa141891d0b22d509a941aa57e24e', # Set-IntSpan-Fast-1.15.tar.gz + ], + }), + ('Sub::Exporter::Progressive', '0.001013', { + 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FR/FREW'], + 'checksums': [ + # Sub-Exporter-Progressive-0.001013.tar.gz + 'd535b7954d64da1ac1305b1fadf98202769e3599376854b2ced90c382beac056', + ], + }), + ('Data::Dumper::Concise', '2.023', { + 'source_tmpl': 'Data-Dumper-Concise-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'a6c22f113caf31137590def1b7028a7e718eface3228272d0672c25e035d5853', # Data-Dumper-Concise-2.023.tar.gz + ], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': [ + '452995beeabf0e923e65fdc627a725dbb12c9e10c00d8018c16d10ba62757f1e', # File-Slurp-Tiny-0.004.tar.gz + ], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + 'checksums': [ + '30e84ac4b31d40b66293f7b1221331c5a50561a39d580d85004d9c1fff991751', # Algorithm-Diff-1.1903.tar.gz + ], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'be6a957f04a2feba9b305536b132deceba1f455db295b221a63e75567fadbcfc', # AnyData-0.12.tar.gz + ], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + 'checksums': [ + '5b80b7d5e709d34393bcba88971864a17b44a5bf0f9e4bcee383d029e7d2d5c3', # Text-Iconv-1.7.tar.gz + ], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '9967feceea15227e442ec818723163eb6d73b8947e31f16ab806f6e2391af14a', # Class-Data-Inheritable-0.08.tar.gz + ], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': [ + '057753f8f0568b53921f66a60a89c30092b73329bcc61a2c43339ab70c9792c8', # Text-Balanced-2.03.tar.gz + ], + }), + ('strictures', '2.000003', { + 'source_tmpl': 'strictures-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + '27f8ea096a521e9754d36ea32889c2cda28346d04e3e399e7ea118d182dbaf22', # strictures-2.000003.tar.gz + ], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + 'checksums': [ + '31354975140fe6235ac130a109496491ad33dd42f9c62189e23f49f75f936d75', # Switch-2.17.tar.gz + ], + }), + ('File::Which', '1.21', { + 'source_tmpl': 'File-Which-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + 'checksums': [ + '9def5f10316bfd944e56b7f8a2501be1d44c288325309462aa9345e340854bcc', # File-Which-1.21.tar.gz + ], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '579c617e303b9d874411c7b61b46b59d36f815718625074ae6832e7bb9db5104', # Email-Date-Format-1.005.tar.gz + ], + }), + ('Error', '0.17025', { + 'source_tmpl': 'Error-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '6c9f474ad3d4fe0cabff6b6be532cb1dd348245986d4a6b600ad921d5cfdefaf', # Error-0.17025.tar.gz + ], + }), + ('Mock::Quick', '1.111', { + 'source_tmpl': 'Mock-Quick-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': [ + 'ff786008bf8c022064ececd3b7ed89c76b35e8d1eac6cf472a9f51771c1c9f2c', # Mock-Quick-1.111.tar.gz + ], + }), + ('Text::CSV', '1.95', { + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '7e0a11d9c1129a55b68a26aa4b37c894279df255aa63ec8341d514ab848dbf61', # Text-CSV-1.95.tar.gz + ], + }), + ('Test::Output', '1.031', { + 'source_tmpl': 'Test-Output-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + 'checksums': [ + 'f8b8f37185717872727d06f6c078fa77db794410faf2f6da4d37b0b7650f7ea4', # Test-Output-1.031.tar.gz + ], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '541354fe361c56850cb11261f6ca089a14573fa764792447444ff736ae626206', # Class-DBI-v3.0.17.tar.gz + ], + }), + ('List::AllUtils', '0.14', { + 'source_tmpl': 'List-AllUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'e45aa65927ae1975a000cc2fed14274627fa5e2bd09bab826a5f2c41d17ef6cd', # List-AllUtils-0.14.tar.gz + ], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], + 'checksums': [ + '94ce27a546cd57cb52e080a8f2533a7cc2350028388582485bd1039a37871f9c', # UNIVERSAL-moniker-0.08.tar.gz + ], + }), + ('Exception::Class', '1.43', { + 'source_tmpl': 'Exception-Class-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'ff3b4b3f706e84aaa87ab0dee5cec6bd7a8fc9f72cf76d115212541fa0a13760', # Exception-Class-1.43.tar.gz + ], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '66fb417f8ff8a5e5b7ea25606156e70e204861c59fa8c3831925b4dd3f155f8a', # File-CheckTree-4.42.tar.gz + ], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + 'checksums': [ + '409a8e0e4b1025c8e80f628f65a9778aa77ab285161406ca4a6c097b13656d0d', # Math-VecStat-0.08.tar.gz + ], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + 'checksums': [ + '15a840ea1c8a76cd3c865fbbf2fec33b03615c0daa50f9c800c54e0cf0659d46', # Pod-LaTeX-0.61.tar.gz + ], + }), + ('Eval::Closure', '0.14', { + 'source_tmpl': 'Eval-Closure-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + 'ea0944f2f5ec98d895bef6d503e6e4a376fea6383a6bc64c7670d46ff2218cad', # Eval-Closure-0.14.tar.gz + ], + }), + ('HTTP::Request', '6.13', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + 'f25f38428de851e5661e72f124476494852eb30812358b07f1c3a289f6f5eded', # HTTP-Message-6.13.tar.gz + ], + }), + ('XML::Twig', '3.52', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + 'checksums': [ + 'fef75826c24f2b877d0a0d2645212fc4fb9756ed4d2711614ac15c497e8680ad', # XML-Twig-3.52.tar.gz + ], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '2a3f4ad8442d9070780e58ef43722d19d1ee21a803bf7c8206877a10482de5a0', # IO-String-1.08.tar.gz + ], + }), + ('XML::Simple', '2.24', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': [ + '9a14819fd17c75fbb90adcec0446ceab356cab0ccaff870f2e1659205dc2424f', # XML-Simple-2.24.tar.gz + ], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '61e567a7679588887b7b86d427bc476ea6d77fffe7e0d17d640f89007d98ef0f', # Sub-Install-0.928.tar.gz + ], + }), + ('HTTP::Cookies', '6.04', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': [ + '0cc7f079079dcad8293fea36875ef58dd1bfd75ce1a6c244cd73ed9523eb13d4', # HTTP-Cookies-6.04.tar.gz + ], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + 'checksums': [ + '1bbfbf7d1d4871e5a83bab2137e22d089078206815190eb1d5c1260a3499456f', # Pod-Plainer-1.04.tar.gz + ], + }), + ('Test::Exception::LessClever', '0.009', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + # Test-Exception-LessClever-0.009.tar.gz + '3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34', + ], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '18790b0cc5f0a51468495c3847b16738f785a2d460403595001e0b932e5db676', # LWP-MediaTypes-6.02.tar.gz + ], + }), + ('Scalar::Util', '1.48', { + 'source_tmpl': 'Scalar-List-Utils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + 'checksums': [ + '0e5318308789ba3625e053001da0a6c5218dc73e561a207d1b91131d06c0d09f', # Scalar-List-Utils-1.48.tar.gz + ], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + '0b3035ffdb909aa1f7ded6b608fa9d894421c82c097d51e7171170d67579a9cb', # Data-Section-Simple-0.07.tar.gz + ], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + 'checksums': [ + '6b1e45acc561e0708e00a2fcf16e157cad8b8963d1bf73726f77dd809b8aebc4', # Class-Trigger-0.14.tar.gz + ], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + '43fd867742701a3f9fcc7bd59838ab72c6490c0ebaf66901068ec6997514adc2', # HTTP-Daemon-6.01.tar.gz + ], + }), + ('File::HomeDir', '1.002', { + 'source_tmpl': 'File-HomeDir-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + 'eb4c0c85775138460cd4013d8117232f08e88381c95c6a93b3d11e969185c274', # File-HomeDir-1.002.tar.gz + ], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': [ + 'e8b9941da0f9f0c9c01068401a5e81341f0e3707d1c754f8e11f42a7e629e333', # HTTP-Date-6.02.tar.gz + ], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '6614fa7518f094f853741b63c73f3627168c5d3aca89b1d02b1016dc32854e09', # Authen-SASL-2.16.tar.gz + ], + }), + ('Clone', '0.39', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + 'checksums': [ + 'acb046683e49d650b113634ecf57df000816a49e611b0fff70bf3f93568bfa2d', # Clone-0.39.tar.gz + ], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + 'checksums': [ + 'b2296fdcf9addc8e8fc39e15eb2c3d81145f6355258438bc783b12b02c41cb81', # Data-Types-0.09.tar.gz + ], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': [ + 'bd9e77a3fb662b40b43b18d3280cd352edf9fad8d94283e518181cc1ce9f0567', # Import-Into-1.002005.tar.gz + ], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': [ + 'bd725df481d7223ee787e154c116098b08a129f55e0763194b07ebea3dda33ec', # DateTime-Tiny-1.06.tar.gz + ], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '247f0d88e55076fd3f6c7bf3fd527989d62fcc1ef9bde9bf2ee11c280adcaeab', # DBD-AnyData-0.110.tar.gz + ], + }), + ('Text::Format', '0.60', { + 'source_tmpl': 'Text-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': [ + '664f313570604624ff9e1fc9b26b6d04e06897b3e4eac83089fc0905a692a2b8', # Text-Format-0.60.tar.gz + ], + }), + ('Devel::CheckCompiler', '0.07', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + 'checksums': [ + '768b7697b4b8d4d372c7507b65e9dd26aa4223f7100183bbb4d3af46d43869b5', # Devel-CheckCompiler-0.07.tar.gz + ], + }), + ('Log::Handler', '0.88', { + 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + 'checksums': [ + '45bf540ab2138ed3ff93afc205b0516dc75755b86acdcc5e75c41347833c293d', # Log-Handler-0.88.tar.gz + ], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': [ + '85e2f805bfc81cd738c294316b27a515397036f397a0ff1c6c8d754c38530306', # DBIx-ContextualFetch-1.03.tar.gz + ], + }), + ('Devel::StackTrace', '2.02', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': [ + 'cbbd96db0ecf194ed140198090eaea0e327d9a378a4aa15f9a34b3138a91931f', # Devel-StackTrace-2.02.tar.gz + ], + }), + ('Term::ReadKey', '2.37', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + 'checksums': [ + '4a9383cf2e0e0194668fe2bd546e894ffad41d556b41d2f2f577c8db682db241', # TermReadKey-2.37.tar.gz + ], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + 'checksums': [ + '11b7549b13ec5d87cc695dd4c777cd02983dd5fe9866012877fb530f48b3dfd0', # Set-IntSpan-1.19.tar.gz + ], + }), + ('Moose', '2.2006', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': [ + 'a4e00ab25cc41bebc5e7a11d71375fb5e64b56d5f91159afee225d698e06392b', # Moose-2.2006.tar.gz + ], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': [ + 'f27733e8d89cf2ab621284c2584da90ab0cb743ba2295ee739fe51bf92561e37', # Algorithm-Dependency-1.110.tar.gz + ], + }), + ('Font::TTF', '1.06', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': [ + '4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293', # Font-TTF-1.06.tar.gz + ], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565', # IPC-Run3-0.048.tar.gz + ], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': [ + '7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe', # File-Find-Rule-0.34.tar.gz + ], + }), + ('SQL::Statement', '1.412', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': [ + '65c870883379c11b53f19ead10aaac241ccc86a90bbab77f6376fe750720e5c8', # SQL-Statement-1.412.tar.gz + ], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': [ + 'ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643', # File-Slurp-9999.19.tar.gz + ], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': [ + '06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c', # Package-Stash-0.37.tar.gz + ], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + '366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3', # Data-OptList-0.110.tar.gz + ], + }), + ('CPANPLUS', '0.9168', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': [ + 'ea7b3278a688721729244de4d8efc57536be833458d93172c412bdc7c3c1ed02', # CPANPLUS-0.9168.tar.gz + ], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': [ + 'a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d', # IO-Tty-1.12.tar.gz + ], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': [ + 'f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed', # Text-Soundex-3.05.tar.gz + ], + }), + ('Lingua::EN::PluralToSingular', '0.19', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': [ + # Lingua-EN-PluralToSingular-0.19.tar.gz + 'c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e', + ], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': [ + 'b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7', # Want-0.29.tar.gz + ], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': [ + '7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77', # Cwd-Guard-0.05.tar.gz + ], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': [ + 'c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7', # Bundle-BioPerl-2.1.9.tar.gz + ], + }), + ('Mail::Util', '2.19', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': [ + 'c17ed702efea8eab56fe92961c07cd4980cee26ca6f13aff2688dc8af69c5e1a', # MailTools-2.19.tar.gz + ], + }), + ('Text::Template', '1.47', { + 'source_tmpl': 'Text-Template-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': [ + '50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc', # Text-Template-1.47.tar.gz + ], + }), + ('PDF::API2', '2.033', { + 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': [ + '9c0866ec1a3053f73afaca5f5cdbe6925903b4ce606f4bf4ac317731a69d27a0', # PDF-API2-2.033.tar.gz + ], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': [ + 'bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1', # Devel-CheckLib-1.11.tar.gz + ], + }), + ('SVG', '2.78', { + 'source_tmpl': 'SVG-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], + 'checksums': [ + 'a665c1f18c0529f3da0f4b631976eb47e0f71f6d6784ef3f44d32fd76643d6bb', # SVG-2.78.tar.gz + ], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JE/JETTERO'], + 'checksums': [ + '6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb', # Statistics-Basic-1.6611.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From 5f1f51a2d7ee93b2c07c966fc6ede4d3456f3731 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 14:59:52 +0200 Subject: [PATCH 532/845] adding easyconfigs: OpenMPI-3.0.0-GCC-7.2.0-2.29.eb --- .../o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb new file mode 100644 index 0000000000..692ddc30e2 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '3.0.0' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '7.2.0-2.29'} + +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['0bbb279b88edc25bbded39520dab6d4b32020277a6088fb1456c9437a8231cf8'] + +dependencies = [('hwloc', '1.11.7')] + +configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# to enable SLURM integration (site-specific) +# configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr' + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +dependencies = [('zlib', '1.2.11')] + +libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': [], +} + +moduleclass = 'mpi' -- GitLab From 2edc2e161715a617a6ac3def4347cc5d9e742535 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 15:06:01 +0200 Subject: [PATCH 533/845] adding easyconfigs: FFmpeg-3.3.4-intel-2017a.eb, x264-20170913-intel-2017a.eb --- .../f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb | 33 +++++++++++++++++ .../x/x264/x264-20170913-intel-2017a.eb | 36 +++++++++++++++++++ 2 files changed, 69 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb create mode 100644 easybuild/easyconfigs/x/x264/x264-20170913-intel-2017a.eb diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb new file mode 100644 index 0000000000..cd11763563 --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '3.3.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://ffmpeg.org/releases/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['5ef5e9276c311c74ab2e9d301c2d7ee10e1f2cbd758c6f13d6cb9514dffbac7e'] + +dependencies = [ + ('NASM', '2.12.02'), + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('x264', '20170913'), + ('X11', '20170314'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in [SHLIB_EXT, 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/x264/x264-20170913-intel-2017a.eb b/easybuild/easyconfigs/x/x264/x264-20170913-intel-2017a.eb new file mode 100644 index 0000000000..e83a97dff0 --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20170913-intel-2017a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20170913' + +homepage = 'http://www.videolan.org/developers/x264.html' + +description = """ + x264 is a free software library and application for encoding video streams + into the H.264/MPEG-4 AVC compression format, and is released under the + terms of the GNU GPL. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [ + 'https://download.videolan.org/pub/videolan/x264/snapshots/', + 'ftp://ftp.videolan.org/pub/videolan/x264/snapshots/', +] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] +checksums = ['7d6764556065f5625cc99e2bdb811f9cce980adc98a2ddf87466fdf32f0f71c1'] + +dependencies = [ + ('Yasm', '1.3.0'), +] + +configopts = " --enable-shared --enable-static" + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', + 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From 92636b522c784e0f6a4a27dd365a5f807f797a1b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 17:17:10 +0200 Subject: [PATCH 534/845] adding easyconfigs: icc-2018.0.128-GCC-6.4.0-2.28.eb, ifort-2018.0.128-GCC-6.4.0-2.28.eb, iccifort-2018.0.128-GCC-6.4.0-2.28.eb, iimpi-2017.09.eb, impi-2018.0.128-iccifort-2018.0.128-GCC-6.4.0-2.28.eb, imkl-2018.0.128-iimpi-2017.09.eb, intel-2017.09.eb, HPL-2.2-intel-2017.09.eb --- .../h/HPL/HPL-2.2-intel-2017.09.eb | 19 +++++++++ .../i/icc/icc-2018.0.128-GCC-6.4.0-2.28.eb | 33 ++++++++++++++++ .../iccifort-2018.0.128-GCC-6.4.0-2.28.eb | 18 +++++++++ .../ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb | 39 +++++++++++++++++++ .../easyconfigs/i/iimpi/iimpi-2017.09.eb | 20 ++++++++++ .../i/imkl/imkl-2018.0.128-iimpi-2017.09.eb | 38 ++++++++++++++++++ ....128-iccifort-2018.0.128-GCC-6.4.0-2.28.eb | 31 +++++++++++++++ .../easyconfigs/i/intel/intel-2017.09.eb | 24 ++++++++++++ 8 files changed, 222 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb create mode 100644 easybuild/easyconfigs/i/icc/icc-2018.0.128-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2018.0.128-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-2018.0.128-iccifort-2018.0.128-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/intel/intel-2017.09.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb new file mode 100644 index 0000000000..c5ef96c4ab --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb @@ -0,0 +1,19 @@ +name = 'HPL' +version = '2.2' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) + arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available + implementation of the High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2017.09'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] +checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/icc/icc-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2018.0.128-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..79219828af --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2018.0.128-GCC-6.4.0-2.28.eb @@ -0,0 +1,33 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'icc' +version = '2018.0.128' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Intel C and C++ compilers" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp.tgz'] + +checksums = ['63fa158694c06ab3a1cac3ee54f978a45921079e302d185d4057c819f4ce99ea'] + +gccver = '6.4.0' +binutilsver = '2.28' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-ccomp', 'intel-icc', 'intel-openmp', 'intel-ipsc?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2018.0.128-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..9a60a272ff --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -0,0 +1,18 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild +easyblock = 'Toolchain' + +name = 'iccifort' +version = '2018.0.128' +versionsuffix = '-GCC-6.4.0-2.28' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = "Intel C, C++ & Fortran compilers" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..61e6f081cb --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -0,0 +1,39 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'ifort' +version = '2018.0.128' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Intel Fortran compiler" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tgz'] + +checksums = [ + '597718bf752a52e043675102c6c03971be5dd3400a2e849bc295094395beef89', # parallel_studio_xe_2018_composer_edition_for_fortran.tgz + '7241e492a5f7ba4e62e8106c97f585c2fd931e32886d886f7bf0a9020e421325', # ifort_2017_no_mpi_mic_dependency.patch +] + +# remove dependency on intel-mpi-rt-mic +patches = ['ifort_2017_no_mpi_mic_dependency.patch'] + +gccver = '6.4.0' +binutilsver = '2.28' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-fcomp', 'intel-ifort', 'intel-openmp', 'intel-ipsf?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb new file mode 100644 index 0000000000..da9bb166af --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb @@ -0,0 +1,20 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild +easyblock = "Toolchain" + +name = 'iimpi' +version = '2017.09' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2018.0.128' +suff = '-GCC-6.4.0-2.28' +dependencies = [ + ('icc', compver, suff), + ('ifort', compver, suff), + ('impi', compver, '', ('iccifort', '%s%s' % (compver, suff))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb b/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb new file mode 100644 index 0000000000..b131c80889 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb @@ -0,0 +1,38 @@ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ + +name = 'imkl' +version = '2018.0.128' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '2017.09'} + +sources = ['l_mkl_%(version)s.tgz'] +checksums = ['c368baa40ca88057292512534d7fad59fa24aef06da038ea0248e7cd1e280cec'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +interfaces = True + +postinstallcmds = [ + # extract the examples + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/' +] + +modextravars = { + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-2018.0.128-iccifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2018.0.128-iccifort-2018.0.128-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..8d39255a0b --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-2018.0.128-iccifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -0,0 +1,31 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'impi' +version = '2018.0.128' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = "Intel MPI Library, compatible with MPICH ABI" + +toolchain = {'name': 'iccifort', 'version': '2018.0.128-GCC-6.4.0-2.28'} + +sources = ['l_mpi_%(version)s.tgz'] + +checksums = ['debaf2cf80df06db9633dfab6aa82213b84a665a55ee2b0178403906b5090209'] + +dontcreateinstalldir = 'True' + +components = ['intel-mpi', 'intel-psxe', 'intel-imb'] + +# set up all the mpi commands to default to intel compilers +# set_mpi_wrappers_all = 'True' + +postinstallcmds = [ + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpich.so', + 'ln -s %(installdir)s/lib64/libmpigc4.so %(installdir)s/lib64/libmpichcxx.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libfmpich.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libmpichf90.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpl.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libopa.so' +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2017.09.eb b/easybuild/easyconfigs/i/intel/intel-2017.09.eb new file mode 100644 index 0000000000..7dd45a6875 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2017.09.eb @@ -0,0 +1,24 @@ +easyblock = 'Toolchain' + +name = 'intel' +version = '2017.09' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)." + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2018.0.128' +gccver = '6.4.0' +binutilsver = '2.28' +gccsuff = '-GCC-%s-%s' % (gccver, binutilsver) +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '-GCCcore-%s' % gccver), + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', compver, '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', compver, '', ('iimpi', version)), +] + +moduleclass = 'toolchain' -- GitLab From b3c0c8a6b79eef130fe534810859939db1276230 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 22:34:43 +0200 Subject: [PATCH 535/845] fix building Bison 2.5 on systems with recent glibc --- easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb | 3 ++- .../easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb | 3 ++- .../easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb | 3 ++- .../easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb | 3 ++- .../easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb | 3 ++- .../easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb | 3 ++- .../easyconfigs/b/Bison/Bison-2.5_fix-gets.patch | 12 ++++++++++++ 7 files changed, 24 insertions(+), 6 deletions(-) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-2.5_fix-gets.patch diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb index ad34232c28..42ca390125 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb @@ -9,8 +9,9 @@ into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser toolchain = {'name': 'GCC', 'version': '4.6.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Bison-%(version)s_fix-gets.patch'] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb index 5c91aa97e5..d8c2bec8aa 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb @@ -9,8 +9,9 @@ into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Bison-%(version)s_fix-gets.patch'] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb index 3257ed4046..ae581fd5f3 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb @@ -10,8 +10,9 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'ictce', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Bison-%(version)s_fix-gets.patch'] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb index 18dbc65289..80311e8c5d 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb @@ -10,8 +10,9 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'ictce', 'version': '5.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Bison-%(version)s_fix-gets.patch'] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb index 37e75810f2..de950cdbac 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb @@ -9,8 +9,9 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'ictce', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Bison-%(version)s_fix-gets.patch'] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb index 5f58f02694..d7728a98f9 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb @@ -9,8 +9,9 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'intel', 'version': '2014b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Bison-%(version)s_fix-gets.patch'] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5_fix-gets.patch b/easybuild/easyconfigs/b/Bison/Bison-2.5_fix-gets.patch new file mode 100644 index 0000000000..d3b646825b --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5_fix-gets.patch @@ -0,0 +1,12 @@ +fix for "'gets' undeclared here" error with recent glibc +see also https://bugs.gentoo.org/424978 +--- bison-2.5/lib/stdio.in.h.orig 2017-09-15 22:19:26.014249360 +0200 ++++ bison-2.5/lib/stdio.in.h 2017-09-15 22:19:47.694669181 +0200 +@@ -181,7 +181,6 @@ + so any use of gets warrants an unconditional warning. Assume it is + always declared, since it is required by C89. */ + #undef gets +-_GL_WARN_ON_USE (gets, "gets is a security hole - use fgets instead"); + + #if @GNULIB_FOPEN@ + # if @REPLACE_FOPEN@ -- GitLab From 763369422903dd08e401c2117bf51b2dc8ebdeed Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 22:37:02 +0200 Subject: [PATCH 536/845] add SHA256 checksums in Bison 2.5 easyconfigs --- easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb | 4 ++++ easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb | 4 ++++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb | 4 ++++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb | 4 ++++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb | 4 ++++ easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb | 4 ++++ 6 files changed, 24 insertions(+) diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb index 42ca390125..3222d06042 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'GCC', 'version': '4.6.3'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] patches = ['Bison-%(version)s_fix-gets.patch'] +checksums = [ + '722def46e4a19a5b7a579ef30db1965f86c37c1a20a5f0113743a2e4399f7c99', # bison-2.5.tar.gz + 'a048873fe6491e7c97bb380e9df5e6869089719166a4d73424edd00628b830b2', # Bison-2.5_fix-gets.patch +] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb index d8c2bec8aa..527ccebc43 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] patches = ['Bison-%(version)s_fix-gets.patch'] +checksums = [ + '722def46e4a19a5b7a579ef30db1965f86c37c1a20a5f0113743a2e4399f7c99', # bison-2.5.tar.gz + 'a048873fe6491e7c97bb380e9df5e6869089719166a4d73424edd00628b830b2', # Bison-2.5_fix-gets.patch +] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb index ae581fd5f3..37ee888ca6 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb @@ -13,6 +13,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] patches = ['Bison-%(version)s_fix-gets.patch'] +checksums = [ + '722def46e4a19a5b7a579ef30db1965f86c37c1a20a5f0113743a2e4399f7c99', # bison-2.5.tar.gz + 'a048873fe6491e7c97bb380e9df5e6869089719166a4d73424edd00628b830b2', # Bison-2.5_fix-gets.patch +] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb index 80311e8c5d..ddb9da74fd 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb @@ -13,6 +13,10 @@ toolchain = {'name': 'ictce', 'version': '5.4.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] patches = ['Bison-%(version)s_fix-gets.patch'] +checksums = [ + '722def46e4a19a5b7a579ef30db1965f86c37c1a20a5f0113743a2e4399f7c99', # bison-2.5.tar.gz + 'a048873fe6491e7c97bb380e9df5e6869089719166a4d73424edd00628b830b2', # Bison-2.5_fix-gets.patch +] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb index de950cdbac..e22ac277b1 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] patches = ['Bison-%(version)s_fix-gets.patch'] +checksums = [ + '722def46e4a19a5b7a579ef30db1965f86c37c1a20a5f0113743a2e4399f7c99', # bison-2.5.tar.gz + 'a048873fe6491e7c97bb380e9df5e6869089719166a4d73424edd00628b830b2', # Bison-2.5_fix-gets.patch +] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb index d7728a98f9..d06627a083 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] patches = ['Bison-%(version)s_fix-gets.patch'] +checksums = [ + '722def46e4a19a5b7a579ef30db1965f86c37c1a20a5f0113743a2e4399f7c99', # bison-2.5.tar.gz + 'a048873fe6491e7c97bb380e9df5e6869089719166a4d73424edd00628b830b2', # Bison-2.5_fix-gets.patch +] builddependencies = [('M4', '1.4.16')] -- GitLab From 930924b7fa1b57ebabf5b3e2337eb6ca18a4957b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 22:38:20 +0200 Subject: [PATCH 537/845] clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock --- .../OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb | 2 -- .../o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb | 2 -- .../o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb | 2 -- .../o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb | 2 -- .../o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-intel-2016a.eb | 2 -- 5 files changed, 10 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb index 2a3beb3683..4e58dd99b5 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb @@ -38,8 +38,6 @@ builddependencies = [ ('CMake', '2.8.12'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) - # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb index 06755b2786..d6646f84d0 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb @@ -40,8 +40,6 @@ builddependencies = [ ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) - # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb index bebef71955..1ae1e9fb7d 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb @@ -38,8 +38,6 @@ builddependencies = [ ('CMake', '2.8.12'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) - # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb index 4ddd37d882..a65e02dfc0 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb @@ -40,8 +40,6 @@ builddependencies = [ ('CMake', '3.3.2'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) - # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-intel-2016a.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-intel-2016a.eb index 00e9eaf007..e10830c3f9 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-intel-2016a.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-intel-2016a.eb @@ -40,8 +40,6 @@ builddependencies = [ ('CMake', '3.5.2'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) - # too many builds in parallel actually slows down the build maxparallel = 4 -- GitLab From 89f832ad300308211023364a6c75beb4984f9432 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 15 Sep 2017 22:47:10 +0200 Subject: [PATCH 538/845] also consider rdma-core-devel as alternative to libibverbs-devel OS dependency --- .../g/GlobalArrays/GlobalArrays-5.3-intel-2015a-openib.eb | 2 +- .../g/GlobalArrays/GlobalArrays-5.4b-foss-2015a-openib.eb | 2 +- ...746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb | 2 +- ...em-6.6.revision27746-iomkl-2017a-2015-10-20-Python-2.7.12.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-5.3.0-2.26.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-6.1.0-2.27.eb | 2 +- .../o/OpenMPI/OpenMPI-1.10.2-PGI-16.3-GCC-4.9.3-2.25.eb | 2 +- .../o/OpenMPI/OpenMPI-1.10.2-PGI-16.4-GCC-5.3.0-2.26.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-6.1.0-2.27.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.10.3-gcccuda-2016.08.eb | 2 +- .../OpenMPI-1.10.3-iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- .../o/OpenMPI/OpenMPI-1.10.4-PGI-16.7-GCC-5.4.0-2.26.eb | 2 +- .../OpenMPI-1.10.4-iccifort-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.6-GNU-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-GNU-4.9.3-2.25.eb | 2 +- .../OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.0-GCC-5.2.0.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-GCC-6.2.0-2.27.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-2.0.1-gcccuda-2016.10.eb | 2 +- .../OpenMPI/OpenMPI-2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-2.0.2-gcccuda-2017.01.eb | 2 +- .../OpenMPI/OpenMPI-2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.0-GCC-6.3.0-2.28.eb | 2 +- easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb | 2 +- .../OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- 48 files changed, 48 insertions(+), 48 deletions(-) diff --git a/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.3-intel-2015a-openib.eb b/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.3-intel-2015a-openib.eb index 160dbeb127..f9d09c3724 100644 --- a/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.3-intel-2015a-openib.eb +++ b/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.3-intel-2015a-openib.eb @@ -13,7 +13,7 @@ toolchainopts = {'usempi': True} source_urls = ['http://hpc.pnl.gov/globalarrays/download/'] sources = ['ga-%(version_major)s-%(version_minor)s.tgz'] -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] configopts = '--with-openib' configopts += ' --with-blas8="-L$BLAS_LIB_DIR $LIBBLAS" --with-lapack="-L$LAPACK_LIB_DIR $LIBLAPACK"' diff --git a/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.4b-foss-2015a-openib.eb b/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.4b-foss-2015a-openib.eb index 0acd5d9070..285f667fcb 100644 --- a/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.4b-foss-2015a-openib.eb +++ b/easybuild/easyconfigs/g/GlobalArrays/GlobalArrays-5.4b-foss-2015a-openib.eb @@ -13,7 +13,7 @@ toolchainopts = {'usempi': True} source_urls = ['http://hpc.pnl.gov/globalarrays/download/'] sources = ['ga-%s.tgz' % version.replace(".", "-")] -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] configopts = '--with-openib' configopts += ' --with-blas8="-L$BLAS_LIB_DIR $LIBBLAS" --with-lapack="-L$LAPACK_LIB_DIR $LIBLAPACK"' diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb index 2387d265fb..d7189c7794 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-intel-2017a-2015-10-20-patches-20170814-Python-2.7.13.eb @@ -79,7 +79,7 @@ dependencies = [('Python', '2.7.13')] # This easyconfig is using the default for armci_network (OPENIB) and # thus needs infiniband libraries. osdependencies = [ - ('libibverbs-dev', 'libibverbs-devel'), + ('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel'), ('libibumad-dev', 'libibumad-devel'), ] diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-iomkl-2017a-2015-10-20-Python-2.7.12.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-iomkl-2017a-2015-10-20-Python-2.7.12.eb index 27d258eaee..f85393e44f 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-iomkl-2017a-2015-10-20-Python-2.7.12.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.6.revision27746-iomkl-2017a-2015-10-20-Python-2.7.12.eb @@ -27,7 +27,7 @@ dependencies = [('Python', '2.7.12')] # This easyconfig is using the default for armci_network (OPENIB) and # thus needs infiniband libraries. osdependencies = [ - ('libibverbs-dev', 'libibverbs-devel'), + ('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel'), ('libibumad-dev', 'libibumad-devel'), ] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb index c91ebdd221..dfafbdd293 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb index 6afba2f292..9fba34d7ad 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-5.3.0-2.26.eb index 4502f5c9f4..d464f30b2f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-5.3.0-2.26.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-6.1.0-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-6.1.0-2.27.eb index 422607a28b..8b0c5ebd22 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-6.1.0-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-6.1.0-2.27.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.3-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.3-GCC-4.9.3-2.25.eb index 26ff9690ec..6cea8ce3bc 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.3-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.3-GCC-4.9.3-2.25.eb @@ -20,7 +20,7 @@ configopts += '--with-cxxrtlib="-lgcc_s -lstdc++"' # for vt-mpi-unify dependencies = [('hwloc', '1.11.3')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.4-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.4-GCC-5.3.0-2.26.eb index 64e4eca3c7..a3e3a91273 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.4-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-PGI-16.4-GCC-5.3.0-2.26.eb @@ -20,7 +20,7 @@ configopts += '--with-cxxrtlib="-lgcc_s -lstdc++"' # for vt-mpi-unify dependencies = [('hwloc', '1.11.3')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-5.4.0-2.26.eb index 1f3b3eb045..d4e8e40907 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-5.4.0-2.26.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-6.1.0-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-6.1.0-2.27.eb index ded2f408ed..8d96ce4344 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-6.1.0-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-GCC-6.1.0-2.27.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-gcccuda-2016.08.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-gcccuda-2016.08.eb index 917b152207..bac6321f61 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-gcccuda-2016.08.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-gcccuda-2016.08.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--with-cuda=$CUDA_HOME ' # CUDA-aware build; N.B. --disable-dlopen is incompatible # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index ed7694b56f..6d1e297ce3 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.3-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.11.3')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-PGI-16.7-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-PGI-16.7-GCC-5.4.0-2.26.eb index f7b06dcb04..fa72c729f1 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-PGI-16.7-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-PGI-16.7-GCC-5.4.0-2.26.eb @@ -22,7 +22,7 @@ configopts += '--with-cxxrtlib="-lgcc_s -lstdc++"' # for vt-mpi-unify dependencies = [('hwloc', '1.11.4')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index c16d7bf245..03bd80d81c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.4-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.11.3')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb index af837e0815..71d41c1e0f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb @@ -15,7 +15,7 @@ configopts = '--with-threads=posix --enable-shared --enable-mpi-threads --with-o configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-ictce-5.5.0.eb index 70d3c85032..18c61b4abf 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-ictce-5.5.0.eb @@ -24,7 +24,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb index fc479108fe..e0fdbd9b1d 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb index 168f6f9d23..46d2a4a233 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb index 933369e32b..1af8bec01f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb @@ -22,7 +22,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb index 231057cda1..9c74aa620d 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb @@ -20,7 +20,7 @@ configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb index 8b4682c1db..8985983b3f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb @@ -23,7 +23,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' dependencies = [('hwloc', '1.8.1')] # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb index 90ce3018de..65455ee083 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb @@ -23,7 +23,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' dependencies = [('hwloc', '1.8.1')] # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb index 069c5ad3b9..678e7e1afb 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb @@ -18,7 +18,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support dependencies = [('hwloc', '1.8.1')] # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb index 7ee3a0b737..dc145861ff 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -18,7 +18,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support dependencies = [('hwloc', '1.9')] # needed for --with-openib -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index 6687a0ffa0..81d45b5e89 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -21,7 +21,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb index eeb7c2fe82..5503a3e1f6 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb index a47fa4f0f1..8e54eb0f67 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb index 19949c397c..f0ceedd49e 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -19,7 +19,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.9')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb index 2eb439ac34..e841ac6255 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb index e009a63259..825a80feb7 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb index d39ca71b30..6731564586 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.10.0')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb index 86eed73b49..d46d33479e 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.10.0')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb index 095d22d991..089abe6b34 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.6-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.6-GNU-4.9.3-2.25.eb index 3e69e3901f..b77284839a 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.6-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.6-GNU-4.9.3-2.25.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-GNU-4.9.3-2.25.eb index 5206425bdf..d15e963eea 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-GNU-4.9.3-2.25.eb @@ -19,7 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 34da0e5297..a2ec79195b 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.11.1')] # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.0-GCC-5.2.0.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.0-GCC-5.2.0.eb index ced6423707..2d2f70b198 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.0-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.0-GCC-5.2.0.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] # VampirTrace is no longer used : https://www.open-mpi.org/community/lists/announce/2016/07/0085.php libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-GCC-6.2.0-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-GCC-6.2.0-2.27.eb index dccf9a16b7..e14a09912c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-GCC-6.2.0-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-GCC-6.2.0-2.27.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-gcccuda-2016.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-gcccuda-2016.10.eb index bc5a7af11f..472ec78a20 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-gcccuda-2016.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-gcccuda-2016.10.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--with-cuda=$CUDA_HOME ' # CUDA-aware build; N.B. --disable-dlopen is incompatible # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26.eb index 79bff619c0..c1cae1b060 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.1-iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27.eb index 3e05777f37..1dad8c8a27 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27.eb @@ -21,7 +21,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-gcccuda-2017.01.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-gcccuda-2017.01.eb index f4abe2cc5c..b815f736b5 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-gcccuda-2017.01.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-gcccuda-2017.01.eb @@ -21,7 +21,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--with-cuda=$CUDA_HOME ' # CUDA-aware build; N.B. --disable-dlopen is incompatible # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27.eb index b2aa187ae0..a843f506c3 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -20,7 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.0-GCC-6.3.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.0-GCC-6.3.0-2.28.eb index f0864ac518..765dbf2d89 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.0-GCC-6.3.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.0-GCC-6.3.0-2.28.eb @@ -21,7 +21,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb index c10c8f486d..addd1e04b1 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-GCC-6.4.0-2.28.eb @@ -23,7 +23,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic # configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr' # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb index 92aa7215fa..06480a4783 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -22,7 +22,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { -- GitLab From 2eea6449998755fda289bec417af663f4c12707a Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Sun, 17 Sep 2017 21:03:32 +0200 Subject: [PATCH 539/845] Style corrected --- .../b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb index dc39f4fd13..b3b4e14eaf 100644 --- a/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/b/BUSCO/BUSCO-1.22-intel-2017a-Python-2.7.13.eb @@ -9,7 +9,6 @@ description = "BUSCO: assessing genome assembly and annotation completeness with toolchain = {'name': 'intel', 'version': '2017a'} - source_urls = ['http://busco.ezlab.org/v1/files/'] sources = ['%(name)s_v%(version)s.tar.gz'] @@ -26,10 +25,10 @@ dependencies = [ postinstallcmds = ['chmod +x %(installdir)s/*.py'] sanity_check_paths = { - 'files': ['BUSCO_v1.22.py'], + 'files': ['BUSCO_v%(version)s.py'], 'dirs': ['sample_data'], } -modextrapaths = {'PATH': '.'} +modextrapaths = {'PATH': ''} moduleclass = 'bio' -- GitLab From 39570f1f1ff749fd45a485de937641f75b43ba17 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Sun, 17 Sep 2017 21:08:27 +0200 Subject: [PATCH 540/845] Checksum + Java bump --- .../e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb index ce07a55a67..7eac56a2c1 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a-X11-20170314.eb @@ -24,16 +24,18 @@ source_urls = [ 'ftp://emboss.open-bio.org/pub/EMBOSS/', 'ftp://emboss.open-bio.org/pub/EMBOSS/old/%(version_major_minor)s.0', ] - sources = [SOURCE_TAR_GZ] - patches = ['EMBOSS_disable-embossupdate.patch'] +checksums = [ + '7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e', # EMBOSS-6.6.0.tar.gz + '3e5e0fbbcb78d62dbfb4586cc9c69d7e602c661f12414d193b2be46024377fd6', # EMBOSS_disable-embossupdate.patch +] dependencies = [ ('X11', x11ver), ('libgd', '2.2.4'), ('libharu', '2.3.0'), - ('Java', '1.8.0_121', '', True), + ('Java', '1.8.0_144', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " -- GitLab From bb9232e07fb72fe3864de97e2d0b07c996d7b2dc Mon Sep 17 00:00:00 2001 From: John Donners Date: Mon, 18 Sep 2017 08:28:00 +0200 Subject: [PATCH 541/845] Updated mostly as suggested. --- .../NEST-2.12.0-foss-2015b-Python-2.7.9.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb new file mode 100644 index 0000000000..f549b80fd7 --- /dev/null +++ b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb @@ -0,0 +1,40 @@ +easyblock = 'CMakeMake' + +name = 'NEST' +version = '2.12.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.nest-simulator.org/' +description = """NEST is a simulator for spiking neural network models + that focuses on the dynamics, size and structure of neural systems rather + than on the exact morphology of individual neurons.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/nest/nest-simulator/releases/download/v%(version)s/'] +sources = ['nest-%(version)s.tar.gz'] +checksums = ['bac578f38bb0621618ee9d5f2f1febfee60cddc000ff32e51a5f5470bb3df40d'] + +dependencies = [ + ('Python', '2.7.9'), + ('libreadline', '6.3'), + ('GSL', '2.1'), + ('libtool', '2.4.6'), + ('ncurses', '5.9'), +] + + +configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE -Dwith-mpi=OFF' + +builddependencies = [ + ('CMake', '3.4.1'), + ('Doxygen', '1.8.10'), + ('pkg-config','0.27.1'), +] + +modextrapaths = { + 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' -- GitLab From cd102d72ec7303c57285691ffe4cd63d55c69d05 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 09:08:54 +0200 Subject: [PATCH 542/845] consistently use empty toolchain version in icc easyconfigs to ensure that GCC(core) dep is loaded during installation --- easybuild/easyconfigs/i/icc/icc-11.1.073-32bit.eb | 2 +- easybuild/easyconfigs/i/icc/icc-11.1.073.eb | 2 +- easybuild/easyconfigs/i/icc/icc-11.1.075.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2011.10.319.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2011.13.367.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2011.3.174.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2011.6.233.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013.1.117.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013.2.146.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013.3.163.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013.4.183.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013.5.192.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013_sp1.0.080.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013_sp1.1.106.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2015.0.090.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2015.1.133.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2015.3.187.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.0.109.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb | 2 +- easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- 31 files changed, 31 insertions(+), 31 deletions(-) diff --git a/easybuild/easyconfigs/i/icc/icc-11.1.073-32bit.eb b/easybuild/easyconfigs/i/icc/icc-11.1.073-32bit.eb index 6db65c8a2e..f7e00fc1b4 100644 --- a/easybuild/easyconfigs/i/icc/icc-11.1.073-32bit.eb +++ b/easybuild/easyconfigs/i/icc/icc-11.1.073-32bit.eb @@ -5,7 +5,7 @@ versionsuffix = '-32bit' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_cproc_p_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-11.1.073.eb b/easybuild/easyconfigs/i/icc/icc-11.1.073.eb index 426c8d4726..46c63ad80a 100644 --- a/easybuild/easyconfigs/i/icc/icc-11.1.073.eb +++ b/easybuild/easyconfigs/i/icc/icc-11.1.073.eb @@ -4,7 +4,7 @@ version = '11.1.073' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_cproc_p_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-11.1.075.eb b/easybuild/easyconfigs/i/icc/icc-11.1.075.eb index 367d02cc42..1de1f4271c 100644 --- a/easybuild/easyconfigs/i/icc/icc-11.1.075.eb +++ b/easybuild/easyconfigs/i/icc/icc-11.1.075.eb @@ -4,7 +4,7 @@ version = '11.1.075' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_cproc_p_%s_intel64.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2011.10.319.eb b/easybuild/easyconfigs/i/icc/icc-2011.10.319.eb index df976c997d..6d6f6e5414 100644 --- a/easybuild/easyconfigs/i/icc/icc-2011.10.319.eb +++ b/easybuild/easyconfigs/i/icc/icc-2011.10.319.eb @@ -4,7 +4,7 @@ version = '2011.10.319' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_intel64_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2011.13.367.eb b/easybuild/easyconfigs/i/icc/icc-2011.13.367.eb index 0e9f729010..c7bc79ecf5 100644 --- a/easybuild/easyconfigs/i/icc/icc-2011.13.367.eb +++ b/easybuild/easyconfigs/i/icc/icc-2011.13.367.eb @@ -4,7 +4,7 @@ version = '2011.13.367' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2011.3.174.eb b/easybuild/easyconfigs/i/icc/icc-2011.3.174.eb index 69a166ec56..6079fd63e8 100644 --- a/easybuild/easyconfigs/i/icc/icc-2011.3.174.eb +++ b/easybuild/easyconfigs/i/icc/icc-2011.3.174.eb @@ -4,7 +4,7 @@ version = '2011.3.174' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_intel64_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2011.6.233.eb b/easybuild/easyconfigs/i/icc/icc-2011.6.233.eb index 5c240e5c11..d2d824632a 100644 --- a/easybuild/easyconfigs/i/icc/icc-2011.6.233.eb +++ b/easybuild/easyconfigs/i/icc/icc-2011.6.233.eb @@ -4,7 +4,7 @@ version = '2011.6.233' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_intel64_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2013.1.117.eb b/easybuild/easyconfigs/i/icc/icc-2013.1.117.eb index f259138a7e..f5c33e155b 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013.1.117.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013.1.117.eb @@ -4,7 +4,7 @@ version = '2013.1.117' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2013.2.146.eb b/easybuild/easyconfigs/i/icc/icc-2013.2.146.eb index c135115579..61bd49e43c 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013.2.146.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013.2.146.eb @@ -4,7 +4,7 @@ version = '2013.2.146' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2013.3.163.eb b/easybuild/easyconfigs/i/icc/icc-2013.3.163.eb index b9b8d9d6de..470e9a2fb4 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013.3.163.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013.3.163.eb @@ -4,7 +4,7 @@ version = '2013.3.163' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/icc/icc-2013.4.183.eb b/easybuild/easyconfigs/i/icc/icc-2013.4.183.eb index db58351c1b..09f67d57b8 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013.4.183.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013.4.183.eb @@ -4,7 +4,7 @@ version = '2013.4.183' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013.5.192.eb b/easybuild/easyconfigs/i/icc/icc-2013.5.192.eb index e42dd9678e..faabee9053 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013.5.192.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013.5.192.eb @@ -4,7 +4,7 @@ version = '2013.5.192' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.0.080.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.0.080.eb index ace7d02238..9a52f9485c 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013_sp1.0.080.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.0.080.eb @@ -4,7 +4,7 @@ version = '2013_sp1.0.080' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.1.106.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.1.106.eb index b62448cecd..8632a6cdd6 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013_sp1.1.106.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.1.106.eb @@ -4,7 +4,7 @@ version = '2013_sp1.1.106' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb index 939c072363..e4a65fd62a 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb @@ -4,7 +4,7 @@ version = '2013_sp1.2.144' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb index 3ebed03a03..a30b07ef34 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb @@ -4,7 +4,7 @@ version = '2013_sp1.3.174' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb index 26892de20b..c8fe08d4d1 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb @@ -5,7 +5,7 @@ version = '2013_sp1.4.211' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb b/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb index 352973960c..0844c56bf1 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb @@ -4,7 +4,7 @@ version = '2015.0.090' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb b/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb index 326875c307..08fdab1423 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb @@ -4,7 +4,7 @@ version = '2015.1.133' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb b/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb index 833da3c0c7..f435774709 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb @@ -4,7 +4,7 @@ version = '2015.3.187' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb index 5ca90df672..ac3b139eff 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb @@ -6,7 +6,7 @@ version = '2016.0.109' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb index c51aeed69f..ddae823dc3 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.2.181' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb index 9efd4f304a..d03f2d3cb5 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb @@ -6,7 +6,7 @@ version = '2016.2.181' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb index c834d93024..bbe90dab4f 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.3.210' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb index 100faf7343..19f9a279fc 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb @@ -6,7 +6,7 @@ version = '2016.3.210' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb index 0e2464f373..9e624b5c3f 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb @@ -6,7 +6,7 @@ version = '2016.3.210' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb index 41ed689a72..e554131ea4 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb @@ -6,7 +6,7 @@ version = '2017.0.098' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb index 77118ae45d..9f1524cfe8 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb @@ -6,7 +6,7 @@ version = '2017.1.132' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb index 362d477441..1b9a91bff7 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb @@ -6,7 +6,7 @@ version = '2017.1.132' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb index 55411b8971..9f323aeae8 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb @@ -6,7 +6,7 @@ version = '2017.2.174' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb index 718eae9dd7..a0716886c4 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.4.196-GCC-6.4.0-2.28.eb @@ -6,7 +6,7 @@ version = '2017.4.196' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Intel C and C++ compilers" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] -- GitLab From 1915d0e5ec1cb0a10833fdca657a72927e888fca Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 09:12:14 +0200 Subject: [PATCH 543/845] consistently use empty toolchain version in ifort easyconfigs to ensure that GCC(core) dep is loaded during installation --- easybuild/easyconfigs/i/ifort/ifort-11.1.073-32bit.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-11.1.073.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-11.1.075.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2011.10.319.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2011.13.367.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2011.3.174.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2011.6.233.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013.1.117.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013.2.146.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013.3.163.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013.4.183.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013.5.192.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013_sp1.0.080.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013_sp1.1.106.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb | 2 +- easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb | 2 +- .../easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb | 2 +- 31 files changed, 31 insertions(+), 31 deletions(-) diff --git a/easybuild/easyconfigs/i/ifort/ifort-11.1.073-32bit.eb b/easybuild/easyconfigs/i/ifort/ifort-11.1.073-32bit.eb index 640705e6d0..fc74e58925 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-11.1.073-32bit.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-11.1.073-32bit.eb @@ -5,7 +5,7 @@ versionsuffix = '-32bit' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_cprof_p_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-11.1.073.eb b/easybuild/easyconfigs/i/ifort/ifort-11.1.073.eb index ee69dc8e33..ba9c113010 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-11.1.073.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-11.1.073.eb @@ -4,7 +4,7 @@ version = '11.1.073' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_cprof_p_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-11.1.075.eb b/easybuild/easyconfigs/i/ifort/ifort-11.1.075.eb index 1372125c7c..daf3938aa9 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-11.1.075.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-11.1.075.eb @@ -4,7 +4,7 @@ version = '11.1.075' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_cprof_p_%s_intel64.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2011.10.319.eb b/easybuild/easyconfigs/i/ifort/ifort-2011.10.319.eb index 222eeaca4e..1188123d79 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2011.10.319.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2011.10.319.eb @@ -4,7 +4,7 @@ version = '2011.10.319' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_intel64_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2011.13.367.eb b/easybuild/easyconfigs/i/ifort/ifort-2011.13.367.eb index ef3f60866f..f68f6572f8 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2011.13.367.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2011.13.367.eb @@ -4,7 +4,7 @@ version = '2011.13.367' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2011.3.174.eb b/easybuild/easyconfigs/i/ifort/ifort-2011.3.174.eb index 5b08216822..1e7388c150 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2011.3.174.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2011.3.174.eb @@ -4,7 +4,7 @@ version = '2011.3.174' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_intel64_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2011.6.233.eb b/easybuild/easyconfigs/i/ifort/ifort-2011.6.233.eb index ad4923d074..1b72efc8cb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2011.6.233.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2011.6.233.eb @@ -4,7 +4,7 @@ version = '2011.6.233' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_intel64_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.1.117.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.1.117.eb index 43b7969dc4..248cf71e35 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013.1.117.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.1.117.eb @@ -4,7 +4,7 @@ version = '2013.1.117' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.2.146.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.2.146.eb index 018ac9b87d..f05bd2bc41 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013.2.146.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.2.146.eb @@ -4,7 +4,7 @@ version = '2013.2.146' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.3.163.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.3.163.eb index d84bb054d0..019cf97f80 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013.3.163.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.3.163.eb @@ -4,7 +4,7 @@ version = '2013.3.163' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%s.tgz' % version] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.4.183.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.4.183.eb index e1ae8632f1..e163dff16b 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013.4.183.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.4.183.eb @@ -4,7 +4,7 @@ version = '2013.4.183' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.5.192.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.5.192.eb index 7b9de4dea5..a8b58b1f42 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013.5.192.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.5.192.eb @@ -4,7 +4,7 @@ version = '2013.5.192' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.0.080.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.0.080.eb index 6402e2f9ac..f72b543550 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.0.080.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.0.080.eb @@ -4,7 +4,7 @@ version = '2013_sp1.0.080' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.1.106.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.1.106.eb index c762cdb26a..67537c71be 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.1.106.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.1.106.eb @@ -4,7 +4,7 @@ version = '2013_sp1.1.106' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb index f987a0ac44..9e2cea7b90 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb @@ -4,7 +4,7 @@ version = '2013_sp1.2.144' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb index a605451b28..50877f89fb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb @@ -4,7 +4,7 @@ version = '2013_sp1.3.174' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb index 104d8f2770..da926f7b5f 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb @@ -5,7 +5,7 @@ version = '2013_sp1.4.211' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb index b312c804d8..311ec00de4 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb @@ -4,7 +4,7 @@ version = '2015.0.090' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb index c2c4c3e7d1..bc7e3e7415 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb @@ -4,7 +4,7 @@ version = '2015.1.133' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb index 6e0324f9b5..881bbb96d2 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb @@ -4,7 +4,7 @@ version = '2015.3.187' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb index d138aad0c3..7579c77a3d 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb @@ -6,7 +6,7 @@ version = '2016.0.109' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb index ece99a7387..3ee959b67b 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.2.181' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb index 5bba923e8f..f0b7f28bbb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -6,7 +6,7 @@ version = '2016.2.181' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb index 856da5d488..3b0e1e5deb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.3.210' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb index 1204efb964..a3e1cae6fd 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -6,7 +6,7 @@ version = '2016.3.210' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb index 52c45d2af4..b9a9fa4899 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -6,7 +6,7 @@ version = '2016.3.210' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb index b49a02c89a..7354161167 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -6,7 +6,7 @@ version = '2017.0.098' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb index 8f58c81952..2f49c69f89 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -6,7 +6,7 @@ version = '2017.1.132' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb index 215324831e..fba2517442 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -6,7 +6,7 @@ version = '2017.1.132' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb index 1d5cac3fad..aa15e0062d 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -6,7 +6,7 @@ version = '2017.2.174' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb index 9fc6419c66..26e9eb1393 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.4.196-GCC-6.4.0-2.28.eb @@ -6,7 +6,7 @@ version = '2017.4.196' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Intel Fortran compiler" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] -- GitLab From d6f7ea33fb8c84213334b49e549d0b657869cbbd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 10:07:56 +0200 Subject: [PATCH 544/845] fix checksum for Python 2.7.14 + version bump for setuptools & six --- .../easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb | 12 ++++++------ .../p/Python/Python-2.7.14-intel-2017b.eb | 12 ++++++------ 2 files changed, 12 insertions(+), 12 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb index b0ea1d804b..9045c620d2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.14-foss-2017b.eb @@ -10,7 +10,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] -checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] +checksums = ['304c9b202ea6fbd0a4a8e0ad3733715fbd4749f2204a9173a58ec53c32ea73e8'] # python needs bzip2 to build the bz2 package dependencies = [ @@ -29,13 +29,13 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! -# package versions updated August 30th 2017 +# package versions updated September 18th 2017 exts_list = [ - ('setuptools', '36.3.0', { + ('setuptools', '36.5.0', { 'source_tmpl': '%(name)s-%(version)s.zip', 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], 'checksums': [ - 'e9fa391c1183b40fc6a1298bee02d554743f23c805a3b75dbb18def0f0755fb1', # setuptools-36.3.0.zip + 'ce2007c1cea3359870b80657d634253a0765b0c7dc5a988d77ba803fc86f2c64', # setuptools-36.5.0.zip ], }), ('pip', '9.0.1', { @@ -96,10 +96,10 @@ exts_list = [ 'c2e63c4794161135adafa8aa4a855d6068073f421c83ffacc39369497a189dd5', # Cython-0.26.1.tar.gz ], }), - ('six', '1.10.0', { + ('six', '1.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], 'checksums': [ - '105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a', # six-1.10.0.tar.gz + '70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9', # six-1.11.0.tar.gz ], }), ('dateutil', '2.6.1', { diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb index 51feaba802..3d663847c2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.14-intel-2017b.eb @@ -10,7 +10,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] -checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] +checksums = ['304c9b202ea6fbd0a4a8e0ad3733715fbd4749f2204a9173a58ec53c32ea73e8'] # python needs bzip2 to build the bz2 package dependencies = [ @@ -29,13 +29,13 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! -# package versions updated August 30th 2017 +# package versions updated September 18th 2017 exts_list = [ - ('setuptools', '36.3.0', { + ('setuptools', '36.5.0', { 'source_tmpl': '%(name)s-%(version)s.zip', 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], 'checksums': [ - 'e9fa391c1183b40fc6a1298bee02d554743f23c805a3b75dbb18def0f0755fb1', # setuptools-36.3.0.zip + 'ce2007c1cea3359870b80657d634253a0765b0c7dc5a988d77ba803fc86f2c64', # setuptools-36.5.0.zip ], }), ('pip', '9.0.1', { @@ -96,10 +96,10 @@ exts_list = [ 'c2e63c4794161135adafa8aa4a855d6068073f421c83ffacc39369497a189dd5', # Cython-0.26.1.tar.gz ], }), - ('six', '1.10.0', { + ('six', '1.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], 'checksums': [ - '105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a', # six-1.10.0.tar.gz + '70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9', # six-1.11.0.tar.gz ], }), ('dateutil', '2.6.1', { -- GitLab From 441ea91b432f477523690ed822bc8acf5162472d Mon Sep 17 00:00:00 2001 From: John Donners Date: Mon, 18 Sep 2017 10:20:08 +0200 Subject: [PATCH 545/845] Fixed style --- .../easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb index f549b80fd7..badbb5845d 100644 --- a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb @@ -30,7 +30,7 @@ configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE -Dwith-mpi=OFF' builddependencies = [ ('CMake', '3.4.1'), ('Doxygen', '1.8.10'), - ('pkg-config','0.27.1'), + ('pkg-config', '0.27.1'), ] modextrapaths = { -- GitLab From d3eb5d0f7c299e046773b57429a990782ce45030 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 11:31:47 +0200 Subject: [PATCH 546/845] include LAME/x265 dependencies to FFmpeg 3.3.4 easyconfig --- .../f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb | 4 ++- .../l/LAME/LAME-3.99.5-intel-2017a.eb | 31 +++++++++++++++++++ .../x/x265/x265-2.5-intel-2017a.eb | 30 ++++++++++++++++++ 3 files changed, 64 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/l/LAME/LAME-3.99.5-intel-2017a.eb create mode 100644 easybuild/easyconfigs/x/x265/x265-2.5-intel-2017a.eb diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb index cd11763563..c5e0304ea7 100644 --- a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb @@ -17,11 +17,13 @@ dependencies = [ ('zlib', '1.2.11'), ('bzip2', '1.0.6'), ('x264', '20170913'), + ('LAME', '3.99.5'), + ('x265', '2.5'), ('X11', '20170314'), ] configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' -configopts += '--enable-libx264' +configopts += '--enable-libx264 --enable-libx265 --enable-libmp3lame' sanity_check_paths = { 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + diff --git a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-intel-2017a.eb b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-intel-2017a.eb new file mode 100644 index 0000000000..7c59b9ecd3 --- /dev/null +++ b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-intel-2017a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Author: Stephane Thiell +### + +easyblock = 'ConfigureMake' + +name = 'LAME' +version = '3.99.5' + +homepage = 'http://lame.sourceforge.net/' +description = """LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://sourceforge.net/projects/lame/files/lame/%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['24346b4158e4af3bd9f2e194bb23eb473c75fb7377011523353196b19b9a23ff'] + +dependencies = [('ncurses', '6.0')] + +# configure is broken: add workaround to find libncurses... +configure_cmd_prefix = "FRONTEND_LDADD='-L${EBROOTNCURSES}/lib' " + +sanity_check_paths = { + 'files': ['bin/lame', 'include/lame/lame.h', 'lib/libmp3lame.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/x265/x265-2.5-intel-2017a.eb b/easybuild/easyconfigs/x/x265/x265-2.5-intel-2017a.eb new file mode 100644 index 0000000000..2d4c17170e --- /dev/null +++ b/easybuild/easyconfigs/x/x265/x265-2.5-intel-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'CMakeMake' + +name = 'x265' +version = '2.5' + +homepage = 'http://x265.org/' +description = """x265 is a free software library and application for encoding video streams into the H.265 + AVC compression format, and is released under the terms of the GNU GPL.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://ftp.videolan.org/pub/videolan/x265/', + 'http://download.videolan.org/pub/videolan/x265/', +] +sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['2e53259b504a7edb9b21b9800163b1ff4c90e60c74e23e7001d423c69c5d3d17'] + +dependencies = [('Yasm', '1.3.0')] + +builddependencies = [('CMake', '3.9.1')] + +start_dir = 'source' + +sanity_check_paths = { + 'files': ['bin/x265', 'include/x265_config.h', 'include/x265.h', 'lib/libx265.a', 'lib/libx265.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From d39e02ccaca9ed22168274f2b6e55db00a4a1e20 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 12:01:17 +0200 Subject: [PATCH 547/845] bump NASM version in FFmpeg 3.3.4 easyconfig --- easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb index c5e0304ea7..4be73253c5 100644 --- a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.4-intel-2017a.eb @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_BZ2] checksums = ['5ef5e9276c311c74ab2e9d301c2d7ee10e1f2cbd758c6f13d6cb9514dffbac7e'] dependencies = [ - ('NASM', '2.12.02'), + ('NASM', '2.13.01'), ('zlib', '1.2.11'), ('bzip2', '1.0.6'), ('x264', '20170913'), -- GitLab From 5f749445a1027ec7d3757d49ae2e342fcdb4837e Mon Sep 17 00:00:00 2001 From: John Donners Date: Mon, 18 Sep 2017 12:59:42 +0200 Subject: [PATCH 548/845] Fixed style & added sanity check --- .../NEST-2.12.0-foss-2015b-Python-2.7.9.eb | 10 ++++-- .../n/NEST/NEST-2.12.0-foss-2015b.eb | 35 ------------------- 2 files changed, 7 insertions(+), 38 deletions(-) delete mode 100644 easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb index badbb5845d..69a7a9c332 100644 --- a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb @@ -16,6 +16,8 @@ source_urls = ['https://github.com/nest/nest-simulator/releases/download/v%(vers sources = ['nest-%(version)s.tar.gz'] checksums = ['bac578f38bb0621618ee9d5f2f1febfee60cddc000ff32e51a5f5470bb3df40d'] +configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE -Dwith-mpi=OFF' + dependencies = [ ('Python', '2.7.9'), ('libreadline', '6.3'), @@ -24,9 +26,6 @@ dependencies = [ ('ncurses', '5.9'), ] - -configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE -Dwith-mpi=OFF' - builddependencies = [ ('CMake', '3.4.1'), ('Doxygen', '1.8.10'), @@ -37,4 +36,9 @@ modextrapaths = { 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'], } +sanity_check_paths = { + 'files': ['bin/nest','lib/libnest.so','lib/libmodels.so'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb deleted file mode 100644 index 700407b571..0000000000 --- a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'NEST' -version = '2.12.0' - -homepage = 'http://www.nest-simulator.org/' -description = """NEST is a simulator for spiking neural network models - that focuses on the dynamics, size and structure of neural systems rather - than on the exact morphology of individual neurons.""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = ['nest-%(version)s.tar.gz'] -source_urls = ['https://github.com/nest/nest-simulator/releases/download/v%(version)s/'] - -dependencies = [ - ('Python', '2.7.9'), - ('libreadline', '6.3'), - ('GSL', '2.1'), - ('libtool', '2.4.6', '-GNU-4.9.3-2.25', True), -] - -configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE' - -builddependencies = [ - ('CMake', '3.4.1'), - ('Doxygen', '1.8.10'), -] - -modextrapaths = { - 'PYTHONPATH': ['lib/python2.7/site-packages'], -} - -moduleclass = 'math' -- GitLab From 33208697e2f31e2da2c0d5bc04b5febb90ccfa62 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 18 Sep 2017 13:35:58 +0200 Subject: [PATCH 549/845] Add extra install file to Rcorrector User gave feedback that this files is also required. --- .../easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb index 9a2677bbd0..abc3fb35ad 100644 --- a/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/r/Rcorrector/Rcorrector-1.0.2-intel-2017a.eb @@ -19,10 +19,13 @@ checksums = [ dependencies = [ ('zlib', '1.2.11'), + ('Perl', '5.24.1'), ('Jellyfish', '2.2.6'), ] -files_to_copy = [(['rcorrector'], 'bin'), 'README.md', 'LICENSE', 'Sample'] +files_to_copy = [(['rcorrector', 'run_rcorrector.pl'], 'bin'), 'README.md', 'LICENSE', 'Sample'] + +postinstallcmds = ["chmod +x %(installdir)s/bin/run_rcorrector.pl"] sanity_check_paths = { 'files': ['bin/rcorrector'], -- GitLab From c3cf16889e302d480254f460a3b80f9fe3eec929 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 17:49:35 +0200 Subject: [PATCH 550/845] adding easyconfigs: Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb, protobuf-python-3.4.0-intel-2017a-Python-2.7.13.eb, protobuf-3.4.0-intel-2017a.eb --- ...-python-3.4.0-intel-2017a-Python-2.7.13.eb | 30 ++++++++++++ .../p/protobuf/protobuf-3.4.0-intel-2017a.eb | 24 +++++++++ ...sorflow-1.3.0-intel-2017a-Python-2.7.13.eb | 49 +++++++++++++++++++ 3 files changed, 103 insertions(+) create mode 100644 easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017a.eb create mode 100755 easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..84dd7d4ec1 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'protobuf-python' +version = '3.4.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/google/protobuf/' +description = """Python Protocol Buffers runtime library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['f6600abeee3babfa18591961a0ff21e7db6a6d9ef82418a261ec4fee44ee6d44'] + +dependencies = [ + ('Python', '2.7.13'), + ('protobuf', version) +] + +start_dir = 'python' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +options = {'modulename': 'google.protobuf'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017a.eb b/easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017a.eb new file mode 100644 index 0000000000..4f15d746b8 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'protobuf' +version = '3.4.0' + +homepage = 'https://github.com/google/protobuf/' +description = """Google Protocol Buffers""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/'] +sources = [SOURCE_TAR_GZ] +checksums = ['f6600abeee3babfa18591961a0ff21e7db6a6d9ef82418a261ec4fee44ee6d44'] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': ['bin/protoc', 'lib/libprotobuf.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb new file mode 100755 index 0000000000..c6295ee512 --- /dev/null +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,49 @@ +easyblock = 'Bundle' + +name = 'Tensorflow' +version = '1.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.tensorflow.org/' +description = "An open-source software library for Machine Intelligence" + +toolchain = {'name': 'intel', 'version': '2017a'} + +pymaj = '2' +pymin = '7' +pymajmin = pymaj + pymin + +dependencies = [ + ('Python', '%s.%s.13' % (pymaj, pymin)), + ('protobuf-python', '3.4.0', versionsuffix), +] + +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('backports.weakref', '1.0.post1', { + 'modulename': 'backports.weakref', + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.weakref'], + 'checksums': ['bc4170a29915f8b22c9e7c4939701859650f2eb84184aee80da329ac0b9825c2'], + }), + ('Tensorflow', '1.3.0', { + 'source_tmpl': 'tensorflow-%(version)s-cp27-cp27mu-manylinux1_x86_64.whl', + 'source_urls': ['https://pypi.python.org/packages/source/t/Tensorflow'], + 'unpack_sources': False, + 'use_pip': True, + 'checksums': ['0bf3866115184d97993d702f2f47cd557fa5a26b6661aa94aa16c05e4a545cfb'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/tensorboard'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'lib' -- GitLab From 54138d2c717c9e7157c655d4154a4b3a5e9e89e1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 17:58:25 +0200 Subject: [PATCH 551/845] adding easyconfigs: GTK+-2.24.31-intel-2017a.eb, ATK-2.26.0-intel-2017a.eb, Gdk-Pixbuf-2.36.10-intel-2017a.eb, Pango-1.40.12-intel-2017a.eb, HarfBuzz-1.5.1-intel-2017a.eb --- .../a/ATK/ATK-2.26.0-intel-2017a.eb | 35 ++++++++++++++ .../g/GTK+/GTK+-2.24.31-intel-2017a.eb | 26 +++++++++++ .../Gdk-Pixbuf-2.36.10-intel-2017a.eb | 46 +++++++++++++++++++ .../h/HarfBuzz/HarfBuzz-1.5.1-intel-2017a.eb | 35 ++++++++++++++ .../p/Pango/Pango-1.40.12-intel-2017a.eb | 32 +++++++++++++ 5 files changed, 174 insertions(+) create mode 100644 easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb create mode 100644 easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-intel-2017a.eb create mode 100644 easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.5.1-intel-2017a.eb create mode 100644 easybuild/easyconfigs/p/Pango/Pango-1.40.12-intel-2017a.eb diff --git a/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb b/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb new file mode 100644 index 0000000000..b57356af82 --- /dev/null +++ b/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'ATK' +version = '2.26.0' + +homepage = 'https://developer.gnome.org/ATK/stable/' +description = """ + ATK provides the set of accessibility interfaces that are implemented by other + toolkits and applications. Using the ATK interfaces, accessibility tools have + full access to view and control running applications. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['eafe49d5c4546cb723ec98053290d7e0b8d85b3fdb123938213acb7bb4178827'] + +dependencies = [ + ('GLib', '2.53.5'), + ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), +] + +configopts = "--enable-introspection=yes" + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['lib/libatk-1.0.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb new file mode 100644 index 0000000000..bf67ec5ff0 --- /dev/null +++ b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'GTK+' +version = '2.24.31' + +homepage = 'https://developer.gnome.org/gtk+/stable/' +description = """ + The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['68c1922732c7efc08df4656a5366dcc3afdc8791513400dac276009b40954658'] + +dependencies = [ + ('ATK', '2.26.0'), + ('Gdk-Pixbuf', '2.36.10'), + ('Pango', '1.40.12'), + ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), +] + +configopts = "--disable-silent-rules --disable-glibtest --enable-introspection=yes --disable-visibility " + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-intel-2017a.eb b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-intel-2017a.eb new file mode 100644 index 0000000000..864e90432a --- /dev/null +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-intel-2017a.eb @@ -0,0 +1,46 @@ +easyblock = 'ConfigureMake' + +name = 'Gdk-Pixbuf' +version = '2.36.10' + +homepage = 'https://developer.gnome.org/gdk-pixbuf/stable/' +description = """ + The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. + It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it + was distributed as part of GTK+ 2 but it was split off into a separate package + in preparation for the change to GTK+ 3. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +patches = ['Gdk-Pixbuf-%(version)s-disable-gio-sniffing.patch'] +checksums = [ + 'f8f6fa896b89475c73b6e9e8d2a2b062fc359c4b4ccb8e96470d6ab5da949ace', # gdk-pixbuf-2.36.10.tar.xz + '840231db69ccc2a1335c4f29c305cdd0ba570254e779c2a274611aaff968878e', # Gdk-Pixbuf-2.36.10-disable-gio-sniffing.patch +] + +builddependencies = [ + ('GObject-Introspection', '1.53.5', '-Python-2.7.13') +] +dependencies = [ + ('GLib', '2.53.5'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.29'), + ('LibTIFF', '4.0.8'), +] + +configopts = "--disable-maintainer-mode --enable-debug=no --enable-introspection=yes " +configopts += "--disable-Bsymbolic --without-gdiplus --enable-shared --enable-static" + +sanity_check_paths = { + 'files': ['lib/libgdk_pixbuf-%(version_major)s.0.a', 'lib/libgdk_pixbuf-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include/gdk-pixbuf-%(version_major)s.0', 'lib/gdk-pixbuf-%(version_major)s.0', 'share'], +} + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.5.1-intel-2017a.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.5.1-intel-2017a.eb new file mode 100644 index 0000000000..c315e68dd6 --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.5.1-intel-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'HarfBuzz' +version = '1.5.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/HarfBuzz' +description = """HarfBuzz is an OpenType text shaping engine.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['56838dfdad2729b8866763c82d623354d138a4d99d9ffb710c7d377b5cfc7c51'] + +dependencies = [ + ('GLib', '2.53.5'), + ('cairo', '1.14.10'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +builddependencies = [('GObject-Introspection', '1.53.5', '-Python-2.7.13')] + +configopts = "--enable-introspection=yes --with-gobject=yes --enable-static --enable-shared --with-cairo " + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT, 'bin/hb-view'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.40.12-intel-2017a.eb b/easybuild/easyconfigs/p/Pango/Pango-1.40.12-intel-2017a.eb new file mode 100644 index 0000000000..10766b3c74 --- /dev/null +++ b/easybuild/easyconfigs/p/Pango/Pango-1.40.12-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'Pango' +version = '1.40.12' + +homepage = 'http://www.pango.org/' +description = """Pango is a library for laying out and rendering of text, with an emphasis on internationalization. +Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the +context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['75f1a9a8e4e2b28cbc078b50c1fa927ee4ded994d1ade97c5603e2d1f3161cfc'] + +dependencies = [ + ('X11', '20170314'), + ('GLib', '2.53.5'), + ('cairo', '1.14.10'), + ('HarfBuzz', '1.5.1'), +] + +builddependencies = [('GObject-Introspection', '1.53.5', '-Python-2.7.13')] + +configopts = "--disable-silent-rules --enable-introspection=yes --enable-static --enable-shared " + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' -- GitLab From b011fd143b43294eba6af37624f546761a49e1a6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 17:59:44 +0200 Subject: [PATCH 552/845] adding easyconfigs: OpenCV-3.3.0-intel-2017a.eb --- .../o/OpenCV/OpenCV-3.3.0-intel-2017a.eb | 89 +++++++++++++++++++ 1 file changed, 89 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb new file mode 100644 index 0000000000..ede04d5755 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb @@ -0,0 +1,89 @@ +easyblock = 'CMakeMake' + +name = 'OpenCV' +version = '3.3.0' + +homepage = 'http://opencv.org/' +description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision + and machine learning software library. OpenCV was built to provide + a common infrastructure for computer vision applications and to accelerate + the use of machine perception in the commercial products.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'https://github.com/Itseez/opencv/archive/', + # The Hash is version dependent! see 3rdparty/ippicv/downloader.cmake + 'https://raw.githubusercontent.com/Itseez/opencv_3rdparty/81a676001ca8075ada498583e4166079e5744668/ippicv', +] +sources = [ + '%(version)s.zip', + {'filename': 'ippicv_linux_20151201.tgz', 'extract_cmd': "cp %s %(builddir)s"}, +] +checksums = [ + '3546c3837f88177c898e4172942da7a3ca6c4e8e98a33d0cbccb2b499167c5ba', # 3.3.0.zip + '4333833e40afaa22c804169e44f9a63e357e21476b765a5683bcb3760107f0da', # ippicv_linux_20151201.tgz +] + +#patches = ['OpenCV-3.1.0_with_IPP.patch'] + +builddependencies = [ + ('CMake', '3.9.1'), +] + +dependencies = [ + ('Python', '2.7.13'), + ('zlib', '1.2.11'), + ('FFmpeg', '3.3.4'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.29'), + ('LibTIFF', '4.0.8'), + ('JasPer', '2.0.12'), + ('Java', '1.8.0_144', '', True), + ('ant', '1.10.1', '-Java-%(javaver)s', True), + ('GLib', '2.53.5'), + ('GTK+', '2.24.31'), +] + +separate_build_dir = True + +preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' + +# The destination directory is "linux-" see 3rdparty/ippicv/downloader.cmake +ippicv_dir = '3rdparty/ippicv/downloads/linux-808b791a6eac9ed78d32a7666804320e/' +preconfigopts = "mkdir -p %s && cp -a ../*.tgz %s && " % (ippicv_dir, ippicv_dir) + +configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DBUILD_PYTHON_SUPPORT=ON ' +configopts += '-DPYTHON_PACKAGES_PATH=%(installdir)s/lib/python%(pyshortver)s/site-packages ' +configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' +configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.%s ' % SHLIB_EXT +configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' +configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.%s ' % SHLIB_EXT +configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' +configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.%s ' % SHLIB_EXT +configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' +configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.%s ' % SHLIB_EXT +configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' +configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' +configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' +configopts += '-DWITH_IPP=ON ' +configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' +configopts += '-DWITH_CUDA=OFF ' + +postinstallcmds = ["cp 3rdparty/ippicv/ippicv_lnx/lib/intel64/libippicv.* %(installdir)s/lib"] + +sanity_check_paths = { + 'files': ['lib/libopencv_core.%s' % SHLIB_EXT] + + ['lib/python%%(pyshortver)s/site-packages/cv2.%s' % SHLIB_EXT] + + ['lib/libippicv.a'] + + ['bin/opencv_%s' % x for x in ['annotation', 'createsamples', 'traincascade']], + 'dirs': ['include'] +} + +modextrapaths = { + 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', + 'CLASSPATH': 'share/OpenCV/java', +} + +moduleclass = 'vis' -- GitLab From 019c3377a79f27a1cecadd06e9345ae3f208f182 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 18:07:40 +0200 Subject: [PATCH 553/845] add missing patch file for Gdk-Pixbuf --- .../Gdk-Pixbuf-2.36.10-disable-gio-sniffing.patch | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-disable-gio-sniffing.patch diff --git a/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-disable-gio-sniffing.patch b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-disable-gio-sniffing.patch new file mode 100644 index 0000000000..3d5360847f --- /dev/null +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.10-disable-gio-sniffing.patch @@ -0,0 +1,15 @@ +hard disable GIO sniffing to avoid relying on shared-mime-info, +and use fallback mechanism to use built-in sniffing based on magic numbers +author: Kenneth Hoste (HPC-UGent) +--- gdk-pixbuf-2.36.10.orig/configure 2017-09-11 13:00:43.000000000 +0200 ++++ gdk-pixbuf-2.36.10/configure 2017-09-18 16:44:23.341170372 +0200 +@@ -19316,6 +19316,9 @@ + fi + + ++# hard disable sniffing, which requires shared-mime-info ++gio_can_sniff=no ++ + if test x$gio_can_sniff = x; then + # Will not run on win32, so require shared-mime-info + -- GitLab From 9c800bab72af59a9d93de54a6da13ede895d6c75 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 18:12:12 +0200 Subject: [PATCH 554/845] also add easyconfig for Tensorflow 1.3.0 with Python 3.6.1 --- ...f-python-3.4.0-intel-2017a-Python-3.6.1.eb | 30 ++++++++++++ ...sorflow-1.3.0-intel-2017a-Python-2.7.13.eb | 2 +- ...nsorflow-1.3.0-intel-2017a-Python-3.6.1.eb | 49 +++++++++++++++++++ 3 files changed, 80 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-3.6.1.eb create mode 100755 easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..bffc1e1ae8 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'protobuf-python' +version = '3.4.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/google/protobuf/' +description = """Python Protocol Buffers runtime library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['f6600abeee3babfa18591961a0ff21e7db6a6d9ef82418a261ec4fee44ee6d44'] + +dependencies = [ + ('Python', '3.6.1'), + ('protobuf', version) +] + +start_dir = 'python' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +options = {'modulename': 'google.protobuf'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb index c6295ee512..129b16a4e4 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-2.7.13.eb @@ -28,7 +28,7 @@ exts_list = [ 'checksums': ['bc4170a29915f8b22c9e7c4939701859650f2eb84184aee80da329ac0b9825c2'], }), ('Tensorflow', '1.3.0', { - 'source_tmpl': 'tensorflow-%(version)s-cp27-cp27mu-manylinux1_x86_64.whl', + 'source_tmpl': 'tensorflow-%%(version)s-cp%(py)s-cp%(py)smu-manylinux1_x86_64.whl' % {'py': pymajmin}, 'source_urls': ['https://pypi.python.org/packages/source/t/Tensorflow'], 'unpack_sources': False, 'use_pip': True, diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-3.6.1.eb new file mode 100755 index 0000000000..5fd396a68b --- /dev/null +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,49 @@ +easyblock = 'Bundle' + +name = 'Tensorflow' +version = '1.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.tensorflow.org/' +description = "An open-source software library for Machine Intelligence" + +toolchain = {'name': 'intel', 'version': '2017a'} + +pymaj = '3' +pymin = '6' +pymajmin = pymaj + pymin + +dependencies = [ + ('Python', '%s.%s.1' % (pymaj, pymin)), + ('protobuf-python', '3.4.0', versionsuffix), +] + +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('backports.weakref', '1.0.post1', { + 'modulename': 'backports.weakref', + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.weakref'], + 'checksums': ['bc4170a29915f8b22c9e7c4939701859650f2eb84184aee80da329ac0b9825c2'], + }), + ('Tensorflow', '1.3.0', { + 'source_tmpl': 'tensorflow-%%(version)s-cp%(py)s-cp%(py)sm-manylinux1_x86_64.whl' % {'py': pymajmin}, + 'source_urls': ['https://pypi.python.org/packages/source/t/Tensorflow'], + 'unpack_sources': False, + 'use_pip': True, + 'checksums': ['a535a4a32aaaf5c59dc582ed472f321a86bf1786d17931c017c0ec7c8f1a1c02'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/tensorboard'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'lib' -- GitLab From 10626dfc9c7bd529ce461daef2db2fbc550162a7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 Sep 2017 20:25:08 +0200 Subject: [PATCH 555/845] GObject-Introspection is just a build dep for ATK & GTK+ --- easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb | 4 +++- easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb | 4 +++- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb b/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb index b57356af82..842e810c1e 100644 --- a/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb +++ b/easybuild/easyconfigs/a/ATK/ATK-2.26.0-intel-2017a.eb @@ -16,9 +16,11 @@ source_urls = [FTPGNOME_SOURCE] sources = [SOURCELOWER_TAR_XZ] checksums = ['eafe49d5c4546cb723ec98053290d7e0b8d85b3fdb123938213acb7bb4178827'] +builddependencies = [ + ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), +] dependencies = [ ('GLib', '2.53.5'), - ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), ] configopts = "--enable-introspection=yes" diff --git a/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb index bf67ec5ff0..e9ae2112ba 100644 --- a/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb @@ -14,11 +14,13 @@ source_urls = [FTPGNOME_SOURCE] sources = [SOURCELOWER_TAR_XZ] checksums = ['68c1922732c7efc08df4656a5366dcc3afdc8791513400dac276009b40954658'] +builddependencies = [ + ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), +] dependencies = [ ('ATK', '2.26.0'), ('Gdk-Pixbuf', '2.36.10'), ('Pango', '1.40.12'), - ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), ] configopts = "--disable-silent-rules --disable-glibtest --enable-introspection=yes --disable-visibility " -- GitLab From c9ccabdffa24aa23759255dbc1274dc943763923 Mon Sep 17 00:00:00 2001 From: John Donners Date: Mon, 18 Sep 2017 20:31:52 +0200 Subject: [PATCH 556/845] Fixed style & sanity check. Added CMAKE_INSTALL_LIBDIR=lib --- .../easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb index 69a7a9c332..cc85bcdf97 100644 --- a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb @@ -16,7 +16,7 @@ source_urls = ['https://github.com/nest/nest-simulator/releases/download/v%(vers sources = ['nest-%(version)s.tar.gz'] checksums = ['bac578f38bb0621618ee9d5f2f1febfee60cddc000ff32e51a5f5470bb3df40d'] -configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE -Dwith-mpi=OFF' +configopts = '-DREADLINE_ROOT_DIR=$EBROOTLIBREADLINE -DCMAKE_INSTALL_LIBDIR=lib -Dwith-mpi=OFF' dependencies = [ ('Python', '2.7.9'), @@ -37,7 +37,7 @@ modextrapaths = { } sanity_check_paths = { - 'files': ['bin/nest','lib/libnest.so','lib/libmodels.so'], + 'files': ['bin/nest', 'lib/libnest.so', 'lib/libmodels.so'], 'dirs': ['lib/python%(pyshortver)s/site-packages'], } -- GitLab From 2640cc2e8ded903c6892965e2ab2fc58c7d0b0e8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 Sep 2017 13:14:56 +0200 Subject: [PATCH 557/845] adding easyconfigs: vsc-mympirun-4.0.2.eb --- .../v/vsc-mympirun/vsc-mympirun-4.0.2.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100755 easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.2.eb diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.2.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.2.eb new file mode 100755 index 0000000000..09d422daec --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.2.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'vsc-mympirun' +version = '4.0.2' + +homepage = 'https://github.com/hpcugent/vsc-mympirun' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['a6ef244a80e29ddb1197c1d1bfac6f7b9a0092abb44c4cff789db42e27a3e1ad'] + +builddependencies = [('vsc-install', '0.10.26')] +dependencies = [('vsc-base', '2.5.8')] + +osdependencies = ['python-setuptools'] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +# don't check for import of vsc.mympirun, since that may fail if vsc-base is picked up from the OS +options = {'modulename': 'vsc'} + +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[:2]) +sanity_check_paths = { + 'files': ['bin/mympirun', 'bin/mympisanity'], + 'dirs': ['bin/fake', 'lib/python%s/site-packages' % pyshortver], +} +sanity_check_commands = ["mympirun --help"] + +moduleclass = 'tools' -- GitLab From 778b8d9e5b617231021d920252ca00e605267b3d Mon Sep 17 00:00:00 2001 From: Ake Sandgren Date: Tue, 19 Sep 2017 13:34:18 +0200 Subject: [PATCH 558/845] adding easyconfigs: HPL-2.2-giolf-2017b.eb --- .../f/FFTW/FFTW-3.3.6-gimpi-2017b.eb | 18 ++++++++++ easybuild/easyconfigs/g/gimpi/gimpi-2017b.eb | 18 ++++++++++ easybuild/easyconfigs/g/giolf/giolf-2017b.eb | 33 +++++++++++++++++++ .../easyconfigs/h/HPL/HPL-2.2-giolf-2017b.eb | 19 +++++++++++ .../i/impi/impi-2017.3.196-GCC-6.4.0-2.28.eb | 31 +++++++++++++++++ ...APACK-2.0.2-gimpi-2017b-OpenBLAS-0.2.20.eb | 25 ++++++++++++++ 6 files changed, 144 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb create mode 100644 easybuild/easyconfigs/g/gimpi/gimpi-2017b.eb create mode 100644 easybuild/easyconfigs/g/giolf/giolf-2017b.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.2-giolf-2017b.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-2017.3.196-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gimpi-2017b-OpenBLAS-0.2.20.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb new file mode 100644 index 0000000000..d94bac964a --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb @@ -0,0 +1,18 @@ +name = 'FFTW' +version = '3.3.6' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gimpi', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = ['fftw-%(version)s-pl2.tar.gz'] +checksums = ['a5de35c5c824a78a058ca54278c706cdf3d4abba1c56b63531c2cb05f5d57da2'] + +skipsteps = ['test'] +#runtest = 'check' + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/gimpi/gimpi-2017b.eb b/easybuild/easyconfigs/g/gimpi/gimpi-2017b.eb new file mode 100644 index 0000000000..5d1bb3c4be --- /dev/null +++ b/easybuild/easyconfigs/g/gimpi/gimpi-2017b.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'gimpi' +version = '2017b' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain with Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp = ('GCC', '6.4.0-2.28') + +dependencies = [ + comp, + ('impi', '2017.3.196', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/giolf/giolf-2017b.eb b/easybuild/easyconfigs/g/giolf/giolf-2017b.eb new file mode 100644 index 0000000000..baba7c3841 --- /dev/null +++ b/easybuild/easyconfigs/g/giolf/giolf-2017b.eb @@ -0,0 +1,33 @@ +easyblock = 'Toolchain' + +name = 'giolf' +version = '2017b' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + IntelMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '6.4.0-2.28' + +blaslib = 'OpenBLAS' +blasver = '0.2.20' +blas = '%s-%s' % (blaslib, blasver) + +# toolchain used to build foss dependencies +comp_mpi_tc_name = 'gimpi' +comp_mpi_tc = (comp_mpi_tc_name, version) + +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preparation functions +# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds +dependencies = [ + ('GCC', gccver), + ('impi', '2017.3.196', '', ('GCC', gccver)), + (blaslib, blasver, '', ('GCC', gccver)), + ('FFTW', '3.3.6', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s' % blas, comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-giolf-2017b.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-giolf-2017b.eb new file mode 100644 index 0000000000..8f4e07e348 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-giolf-2017b.eb @@ -0,0 +1,19 @@ +name = 'HPL' +version = '2.2' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) + arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available + implementation of the High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'giolf', 'version': '2017b'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] +checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.3.196-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.3.196-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..6f72d5d7da --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-2017.3.196-GCC-6.4.0-2.28.eb @@ -0,0 +1,31 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'impi' +version = '2017.3.196' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = "Intel MPI Library, compatible with MPICH ABI" + +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} + +sources = ['l_mpi_%(version)s.tgz'] + +checksums = ['dad9efbc5bbd3fd27cce7e1e2507ad77f342d5ecc929747ae141c890e7fb87f0'] + +dontcreateinstalldir = 'True' + +components = ['intel-mpi', 'intel-psxe', 'intel-imb'] + +# set up all the mpi commands to default to intel compilers +# set_mpi_wrappers_all = 'True' + +postinstallcmds = [ + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpich.so', + 'ln -s %(installdir)s/lib64/libmpigc4.so %(installdir)s/lib64/libmpichcxx.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libfmpich.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libmpichf90.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpl.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libopa.so' +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gimpi-2017b-OpenBLAS-0.2.20.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gimpi-2017b-OpenBLAS-0.2.20.eb new file mode 100644 index 0000000000..7a2fe0f9ae --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gimpi-2017b-OpenBLAS-0.2.20.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gimpi', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] +checksums = ['0c74aeae690fe5ee4db7926f49c5d0bb69ce09eea75beb915e00bba07530395c'] + +blaslib = 'OpenBLAS' +blasver = '0.2.20' + +versionsuffix = "-%s-%s" % (blaslib, blasver) + +dependencies = [(blaslib, blasver, '', ('GCC', '6.4.0-2.28'))] + +# parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From eb7d8c538def3307b7f92defeda8320b24b51f4d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 Sep 2017 14:56:15 +0200 Subject: [PATCH 559/845] adding easyconfigs: ncview-2.1.7-intel-2017a.eb --- .../n/ncview/ncview-2.1.7-intel-2017a.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb new file mode 100644 index 0000000000..14f46ddbc2 --- /dev/null +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2014 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'ConfigureMake' + +name = 'ncview' +version = '2.1.7' + +homepage = 'http://meteora.ucsd.edu/~pierce/ncview_home_page.html' +description = """Ncview is a visual browser for netCDF format files. +Typically you would use ncview to get a quick and easy, push-button +look at your netCDF files. You can view simple movies of the data, +view along various dimensions, take a look at the actual data values, +change color maps, invert the data, etc.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['ftp://cirrus.ucsd.edu/pub/ncview/'] +sources = [SOURCE_TAR_GZ] +checksums = ['a14c2dddac0fc78dad9e4e7e35e2119562589738f4ded55ff6e0eca04d682c82'] + +# specified compiler is hard checked against (full path to) compiler used for netCDF... +preconfigopts = "CC=$(which $CC) " +configopts = "--with-udunits2_incdir=$EBROOTUDUNITS/include --with-udunits2_libdir=$EBROOTUDUNITS/lib " +configopts += "--with-nc-config=$EBROOTNETCDF/bin/nc-config" + +dependencies = [ + ('netCDF', '4.4.1.1'), + ('netCDF-Fortran', '4.4.4'), + ('UDUNITS', '2.2.24'), + ('X11', '20170314'), +] + +sanity_check_paths = { + 'files': ['bin/ncview'], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From 50e67ada89c2e07c3e9b03a264473ba74d325ee5 Mon Sep 17 00:00:00 2001 From: Ake Sandgren Date: Tue, 19 Sep 2017 15:04:58 +0200 Subject: [PATCH 560/845] Re-enable checks for FFTW --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb index d94bac964a..1b29288e0d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-gimpi-2017b.eb @@ -12,7 +12,6 @@ source_urls = [homepage] sources = ['fftw-%(version)s-pl2.tar.gz'] checksums = ['a5de35c5c824a78a058ca54278c706cdf3d4abba1c56b63531c2cb05f5d57da2'] -skipsteps = ['test'] -#runtest = 'check' +runtest = 'check' moduleclass = 'numlib' -- GitLab From 4f4b5128af6e40ace609d2148b850a4a2ef4deb4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 Sep 2017 18:12:05 +0200 Subject: [PATCH 561/845] fix compatibility of ncview with NCL/NCO by using netCDF* on top of HDF5 1.8.18 --- easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb index 14f46ddbc2..7579a24f85 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2017a.eb @@ -31,8 +31,8 @@ configopts = "--with-udunits2_incdir=$EBROOTUDUNITS/include --with-udunits2_libd configopts += "--with-nc-config=$EBROOTNETCDF/bin/nc-config" dependencies = [ - ('netCDF', '4.4.1.1'), - ('netCDF-Fortran', '4.4.4'), + ('netCDF', '4.4.1.1', '-HDF5-1.8.18'), + ('netCDF-Fortran', '4.4.4', '-HDF5-1.8.18'), ('UDUNITS', '2.2.24'), ('X11', '20170314'), ] -- GitLab From e5170cdda29dad58b51c889353aef7c69d6c14d2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 08:51:55 +0200 Subject: [PATCH 562/845] adding easyconfigs: scikit-learn-0.19.0-intel-2017a-Python-3.6.1.eb --- ...t-learn-0.19.0-intel-2017a-Python-3.6.1.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100755 easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.19.0-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.19.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.19.0-intel-2017a-Python-3.6.1.eb new file mode 100755 index 0000000000..327753864d --- /dev/null +++ b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.19.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'scikit-learn' +version = '0.19.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://scikit-learn.org/stable/index.html' +description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, +building upon numpy, scipy, and matplotlib. As a machine-learning module, +it provides versatile tools for data mining and analysis in any field of science and engineering. +It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['24f5cb67559e0df27827b1804b197431c08880d2ec9285724fac90906830021f'] + +dependencies = [ + ('Python', '3.6.1'), + ('matplotlib', '2.0.2', versionsuffix + '-libpng-1.6.29'), +] + +options = {'modulename': 'sklearn'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/sklearn'], +} + +moduleclass = 'data' -- GitLab From 20f7795bfee318b0af26a235fb981e60911f25bd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 08:52:19 +0200 Subject: [PATCH 563/845] adding easyconfigs: scikit-image-0.13.0-intel-2017a-Python-3.6.1.eb, Pillow-4.2.1-intel-2017a-Python-3.6.1.eb --- .../Pillow-4.2.1-intel-2017a-Python-3.6.1.eb | 28 ++++++++++ ...t-image-0.13.0-intel-2017a-Python-3.6.1.eb | 51 +++++++++++++++++++ 2 files changed, 79 insertions(+) create mode 100644 easybuild/easyconfigs/p/Pillow/Pillow-4.2.1-intel-2017a-Python-3.6.1.eb create mode 100644 easybuild/easyconfigs/s/scikit-image/scikit-image-0.13.0-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/p/Pillow/Pillow-4.2.1-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/p/Pillow/Pillow-4.2.1-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..0b05e830a7 --- /dev/null +++ b/easybuild/easyconfigs/p/Pillow/Pillow-4.2.1-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'Pillow' +version = '4.2.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://pillow.readthedocs.org/' +description = """Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. + PIL is the Python Imaging Library by Fredrik Lundh and Contributors.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['c724f65870e545316f9e82e4c6d608ab5aa9dd82d5185e5b2e72119378740073'] + +dependencies = [ + ('Python', '3.6.1'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.29'), + ('zlib', '1.2.11'), + ('LibTIFF', '4.0.8'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +options = {'modulename': 'PIL'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/scikit-image/scikit-image-0.13.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/s/scikit-image/scikit-image-0.13.0-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..071a57a08c --- /dev/null +++ b/easybuild/easyconfigs/s/scikit-image/scikit-image-0.13.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,51 @@ +easyblock = 'Bundle' + +name = 'scikit-image' +version = '0.13.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://scikit-learn.org/stable/index.html' +description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, +building upon numpy, scipy, and matplotlib. As a machine-learning module, +it provides versatile tools for data mining and analysis in any field of science and engineering. +It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '3.6.1'), + ('Qhull', '2015.2'), + ('matplotlib', '2.0.2', versionsuffix + '-libpng-1.6.29'), + ('Pillow', '4.2.1', versionsuffix), +] + +exts_list = [ + ('networkx', '1.11', { + 'source_urls': ['https://pypi.python.org/packages/source/n/networkx'], + 'checksums': [ + '0d0e70e10dfb47601cbb3425a00e03e2a2e97477be6f80638fef91d54dd1e4b8', # networkx-1.11.tar.gz + ], + }), + ('scikit-image', '0.13.0', { + 'modulename': 'skimage', + 'source_urls': ['https://pypi.python.org/packages/source/s/scikit-image'], + 'checksums': [ + '77a636bdc08c7668a15951894548c527f0c8c5c2abc86cb850de17551af51e3e', # scikit-image-0.13.0.tar.gz + ], + }), +] + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'vis' -- GitLab From 26916de04fdc1671570e6f8c1abfbbd125e465f2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 08:52:45 +0200 Subject: [PATCH 564/845] adding easyconfigs: Keras-2.0.8-intel-2017a-Python-3.6.1.eb, h5py-2.7.1-intel-2017a-Python-3.6.1.eb --- .../h5py-2.7.1-intel-2017a-Python-3.6.1.eb | 33 +++++++++++++++++++ .../Keras-2.0.8-intel-2017a-Python-3.6.1.eb | 32 ++++++++++++++++++ 2 files changed, 65 insertions(+) create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-3.6.1.eb create mode 100644 easybuild/easyconfigs/k/Keras/Keras-2.0.8-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..356f080aeb --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'h5py' +version = '2.7.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['180a688311e826ff6ae6d3bda9b5c292b90b28787525ddfcb10a29d5ddcae2cc'] + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '3.6.1'), + ('HDF5', '1.10.1'), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/k/Keras/Keras-2.0.8-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/k/Keras/Keras-2.0.8-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..94353499b7 --- /dev/null +++ b/easybuild/easyconfigs/k/Keras/Keras-2.0.8-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'Keras' +version = '2.0.8' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://keras.io/' +description = """Keras is a minimalist, highly modular neural networks library, written in Python and +capable of running on top of either TensorFlow or Theano.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['899dc6aaed366f20100b9f80cf1093ea5b43eecc74afd1dc63a4e48dfa776ab9'] + +dependencies = [ + ('Python', '3.6.1'), + ('Theano', '0.9.0', versionsuffix), + ('h5py', '2.7.1', versionsuffix), + ('PyYAML', '3.12', versionsuffix), +] + +# it defaults to Tensorflow +modextravars = {'KERAS_BACKEND': 'theano'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' -- GitLab From b47c9f026f622ebbc896483b88b2f793c1a935d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 15:32:09 +0200 Subject: [PATCH 565/845] include easyconfigs for OpenCV 3.3.0 on top of both Python 2.7.13 & Python 3.6.1 --- ...OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb} | 1 + .../OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb | 90 +++++++++++++++++++ 2 files changed, 91 insertions(+) rename easybuild/easyconfigs/o/OpenCV/{OpenCV-3.3.0-intel-2017a.eb => OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb} (98%) create mode 100644 easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb similarity index 98% rename from easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb rename to easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb index ede04d5755..28f5a61bf4 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb @@ -2,6 +2,7 @@ easyblock = 'CMakeMake' name = 'OpenCV' version = '3.3.0' +versionsuffix = '-Python-%(pyver)s' homepage = 'http://opencv.org/' description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..8b3e08f063 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,90 @@ +easyblock = 'CMakeMake' + +name = 'OpenCV' +version = '3.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://opencv.org/' +description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision + and machine learning software library. OpenCV was built to provide + a common infrastructure for computer vision applications and to accelerate + the use of machine perception in the commercial products.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'https://github.com/Itseez/opencv/archive/', + # The Hash is version dependent! see 3rdparty/ippicv/downloader.cmake + 'https://raw.githubusercontent.com/Itseez/opencv_3rdparty/81a676001ca8075ada498583e4166079e5744668/ippicv', +] +sources = [ + '%(version)s.zip', + {'filename': 'ippicv_linux_20151201.tgz', 'extract_cmd': "cp %s %(builddir)s"}, +] +checksums = [ + '3546c3837f88177c898e4172942da7a3ca6c4e8e98a33d0cbccb2b499167c5ba', # 3.3.0.zip + '4333833e40afaa22c804169e44f9a63e357e21476b765a5683bcb3760107f0da', # ippicv_linux_20151201.tgz +] + +#patches = ['OpenCV-3.1.0_with_IPP.patch'] + +builddependencies = [ + ('CMake', '3.9.1'), +] + +dependencies = [ + ('Python', '3.6.1'), + ('zlib', '1.2.11'), + ('FFmpeg', '3.3.4'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.29'), + ('LibTIFF', '4.0.8'), + ('JasPer', '2.0.12'), + ('Java', '1.8.0_144', '', True), + ('ant', '1.10.1', '-Java-%(javaver)s', True), + ('GLib', '2.53.5'), + ('GTK+', '2.24.31'), +] + +separate_build_dir = True + +preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' + +# The destination directory is "linux-" see 3rdparty/ippicv/downloader.cmake +ippicv_dir = '3rdparty/ippicv/downloads/linux-808b791a6eac9ed78d32a7666804320e/' +preconfigopts = "mkdir -p %s && cp -a ../*.tgz %s && " % (ippicv_dir, ippicv_dir) + +configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DBUILD_PYTHON_SUPPORT=ON ' +configopts += '-DPYTHON_PACKAGES_PATH=%(installdir)s/lib/python%(pyshortver)s/site-packages ' +configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' +configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.%s ' % SHLIB_EXT +configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' +configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.%s ' % SHLIB_EXT +configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' +configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.%s ' % SHLIB_EXT +configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' +configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.%s ' % SHLIB_EXT +configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' +configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' +configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' +configopts += '-DWITH_IPP=ON ' +configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' +configopts += '-DWITH_CUDA=OFF ' + +postinstallcmds = ["cp 3rdparty/ippicv/ippicv_lnx/lib/intel64/libippicv.* %(installdir)s/lib"] + +sanity_check_paths = { + 'files': ['lib/libopencv_core.%s' % SHLIB_EXT] + + ['lib/python%%(pyshortver)s/site-packages/cv2.%s' % SHLIB_EXT] + + ['lib/libippicv.a'] + + ['bin/opencv_%s' % x for x in ['annotation', 'createsamples', 'traincascade']], + 'dirs': ['include'] +} + +modextrapaths = { + 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', + 'CLASSPATH': 'share/OpenCV/java', +} + +moduleclass = 'vis' -- GitLab From 6cd28e26d9a315b32d71d0ae3fbe58f540f7f5b8 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Wed, 20 Sep 2017 15:56:13 +0200 Subject: [PATCH 566/845] Boost 1.61.0 for foss 2016a and Python 3.5.1 --- .../Boost-1.61.0-foss-2016a-Python-3.5.1.eb | 27 +++++++++++++++++++ .../b/Boost/Boost-1.61.0_python3.patch | 24 +++++++++++++++++ 2 files changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.61.0_python3.patch diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb b/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb new file mode 100644 index 0000000000..059817b2f2 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb @@ -0,0 +1,27 @@ +name = 'Boost' +version = '1.61.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = [ + 'Boost-%(version)s_python3.patch', +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', '3.5.1'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.61.0_python3.patch b/easybuild/easyconfigs/b/Boost/Boost-1.61.0_python3.patch new file mode 100644 index 0000000000..279cbfb666 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.61.0_python3.patch @@ -0,0 +1,24 @@ +#Boost checks Python include in $(prefix)/include/python$(version) +#some cases it is in $(prefix)/include/python$(version)m +#see more: https://svn.boost.org/trac/boost/ticket/11120 +# Aug 27th 2016 by B. Hajgato (Free Univeristy Brussels - VUB) +--- boost_1_60_0/tools/build/src/tools/python.jam.org 2015-10-16 20:55:36.000000000 +0200 ++++ boost_1_60_0/tools/build/src/tools/python.jam 2016-07-27 16:20:52.549560154 +0200 +@@ -539,7 +539,16 @@ + } + else + { +- includes ?= $(prefix)/include/python$(version) ; ++ if not($(prefix)/include/python$(version)m) ++ { ++ debug-message "Used include path: $(prefix)/include/python$(version)m" ; ++ includes ?= $(prefix)/include/python$(version)m ; ++ } ++ else ++ { ++ debug-message "Used include path: $(prefix)/include/python$(version)" ; ++ includes ?= $(prefix)/include/python$(version) ; ++ } + + local lib = $(exec-prefix)/lib ; + libraries ?= $(lib)/python$(version)/config $(lib) ; -- GitLab From a1ab0934daff713ca57a6cf36bb4f2da70066a65 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 16:03:46 +0200 Subject: [PATCH 567/845] check OpenCV Python bindings using 'import cv2' --- .../o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb | 7 +++---- .../o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb | 7 +++---- 2 files changed, 6 insertions(+), 8 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb index 28f5a61bf4..86d85fc759 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb @@ -75,12 +75,11 @@ configopts += '-DWITH_CUDA=OFF ' postinstallcmds = ["cp 3rdparty/ippicv/ippicv_lnx/lib/intel64/libippicv.* %(installdir)s/lib"] sanity_check_paths = { - 'files': ['lib/libopencv_core.%s' % SHLIB_EXT] + - ['lib/python%%(pyshortver)s/site-packages/cv2.%s' % SHLIB_EXT] + - ['lib/libippicv.a'] + + 'files': ['lib/libopencv_core.%s' % SHLIB_EXT, 'lib/libippicv.a'] + ['bin/opencv_%s' % x for x in ['annotation', 'createsamples', 'traincascade']], - 'dirs': ['include'] + 'dirs': ['include', 'lib/python%(pyshortver)s/site-packages'] } +sanity_check_commands = ["python -c 'import cv2'"] modextrapaths = { 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb index 8b3e08f063..c55533839f 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb @@ -75,12 +75,11 @@ configopts += '-DWITH_CUDA=OFF ' postinstallcmds = ["cp 3rdparty/ippicv/ippicv_lnx/lib/intel64/libippicv.* %(installdir)s/lib"] sanity_check_paths = { - 'files': ['lib/libopencv_core.%s' % SHLIB_EXT] + - ['lib/python%%(pyshortver)s/site-packages/cv2.%s' % SHLIB_EXT] + - ['lib/libippicv.a'] + + 'files': ['lib/libopencv_core.%s' % SHLIB_EXT, 'lib/libippicv.a'] + ['bin/opencv_%s' % x for x in ['annotation', 'createsamples', 'traincascade']], - 'dirs': ['include'] + 'dirs': ['include', 'lib/python%(pyshortver)s/site-packages'] } +sanity_check_commands = ["python -c 'import cv2'"] modextrapaths = { 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', -- GitLab From 9a71a96c80719476e0eac20a98edda597bb26859 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Wed, 20 Sep 2017 16:08:48 +0200 Subject: [PATCH 568/845] use lower version of intel toolchain for compatibility with CUDA/8.0.61 --- ...CUDA-2016.1.2-intel-2016b-Python-2.7.12.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..ca33a5b257 --- /dev/null +++ b/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'PyCUDA' +version = '2016.1.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://mathema.tician.de/software/pycuda' +description = """PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '2.7.12'), + ('CUDA', '8.0.61', '', True), + ('Boost', '1.61.0', versionsuffix), +] + +prebuildopts = "./configure.py --cuda-root=$EBROOTCUDA --boost-inc-dir=$EBROOTBOOST/include/boost/ " +prebuildopts += "--boost-lib-dir=$EBROOTBOOST/lib/ --no-use-shipped-boost --boost-python-libname=boost_python && " + +options = {'modulename': '%(namelower)s'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lang' -- GitLab From 5772038807d4f1c891c0afafdb89673b879627a8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 16:49:32 +0200 Subject: [PATCH 569/845] drop commented out 'patches' line --- .../o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb | 2 -- .../o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb | 2 -- 2 files changed, 4 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb index 86d85fc759..9fa6eb12d3 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-2.7.13.eb @@ -26,8 +26,6 @@ checksums = [ '4333833e40afaa22c804169e44f9a63e357e21476b765a5683bcb3760107f0da', # ippicv_linux_20151201.tgz ] -#patches = ['OpenCV-3.1.0_with_IPP.patch'] - builddependencies = [ ('CMake', '3.9.1'), ] diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb index c55533839f..5df44827ab 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.3.0-intel-2017a-Python-3.6.1.eb @@ -26,8 +26,6 @@ checksums = [ '4333833e40afaa22c804169e44f9a63e357e21476b765a5683bcb3760107f0da', # ippicv_linux_20151201.tgz ] -#patches = ['OpenCV-3.1.0_with_IPP.patch'] - builddependencies = [ ('CMake', '3.9.1'), ] -- GitLab From f334238fc57624d8ccadf452e3ed173a89e49270 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 17:16:24 +0200 Subject: [PATCH 570/845] add patch for Boost 1.64.0 to fix missing include --- .../easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb | 5 +++++ .../Boost-1.64.0_fix-include-array_wrapper.patch | 13 +++++++++++++ 2 files changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-include-array_wrapper.patch diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb index 981136de99..446a15ecf7 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb @@ -9,6 +9,11 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +patches = ['Boost-%(version)s_fix-include-array_wrapper.patch'] +checksums = [ + '0445c22a5ef3bd69f5dfb48354978421a85ab395254a26b1ffb0aa1bfd63a108', # boost_1_64_0.tar.gz + 'aaf0657246d9cde4857954b6d1b9f9454370896b2077294461357d47951ca891', # Boost-1.64.0_fix-include-array_wrapper.patch +] dependencies = [ ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-include-array_wrapper.patch b/easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-include-array_wrapper.patch new file mode 100644 index 0000000000..dd7ab54a9e --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-include-array_wrapper.patch @@ -0,0 +1,13 @@ +see also https://svn.boost.org/trac10/ticket/12516 +and https://github.com/boostorg/serialization/commit/1d86261581230e2dc5d617a9b16287d326f3e229 +--- a/include/boost/serialization/array.hpp ++++ b/include/boost/serialization/array.hpp +@@ -23,6 +23,8 @@ namespace std{ + } // namespace std + #endif + ++#include ++ + #ifndef BOOST_NO_CXX11_HDR_ARRAY + + #include -- GitLab From 024d5e7bd9f18d5a0dae0abd946cadc484444448 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Wed, 20 Sep 2017 17:32:52 +0200 Subject: [PATCH 571/845] Changed checksum to sha256. --- easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb index a04c1df219..c2312d38ff 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-foss-2016a.eb @@ -20,7 +20,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] sources = [SOURCELOWER_TAR_BZ2] -checksums = ['e549fee04d95c1cf8f46347e9e9bbd93'] +checksums = ['85d2dd59ffa614a307d64e9f74a9f999f0912661a8b802ebcc95f537d39933b3'] # cURL added for S3 support dependencies = [ -- GitLab From 6818d3b6298d775625bde8aebd5cb46115226b0a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 20:35:06 +0200 Subject: [PATCH 572/845] adding easyconfigs: nanonet-2.0.0-intel-2017a-Python-2.7.13.eb, h5py-2.7.1-intel-2017a-Python-2.7.13.eb --- .../h5py-2.7.1-intel-2017a-Python-2.7.13.eb | 33 +++++++++++ ...nanonet-2.0.0-intel-2017a-Python-2.7.13.eb | 56 +++++++++++++++++++ 2 files changed, 89 insertions(+) create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..a34bfde78b --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'h5py' +version = '2.7.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['180a688311e826ff6ae6d3bda9b5c292b90b28787525ddfcb10a29d5ddcae2cc'] + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '2.7.13'), + ('HDF5', '1.10.1'), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..2408eb945f --- /dev/null +++ b/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,56 @@ +easyblock = 'Bundle' + +name = 'nanonet' +version = '2.0.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/nanoporetech/nanonet' +description = "Nanonet provides recurrent neural network basecalling for Oxford Nanopore MinION data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('h5py', '2.7.1', versionsuffix), + ('netcdf4-python', '1.2.9', versionsuffix), +] + +exts_list = [ + ('myriad', '0.1.4', { + 'source_tmpl': 'myriad-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/m/myriad'], + 'checksums': [ + 'ae1d836f0e9c37b90b94c185555e485e2c7e36458a4709e39e4aefc3945fdfd5', # myriad-0.1.4.zip + ], + }), + ('watchdog', '0.8.3', { + 'source_urls': ['https://pypi.python.org/packages/source/w/watchdog'], + 'checksums': [ + '7e65882adb7746039b6f3876ee174952f8eaaa34491ba34333ddf1fe35de4162', # watchdog-0.8.3.tar.gz + ], + }), + ('nanonet', '2.0.0', { + 'source_tmpl': 'v%(version)s.tar.gz', + 'source_urls': ['https://github.com/nanoporetech/nanonet/archive'], + 'installopts': 'with2d', + 'checksums': [ + '9896fa8ecf012505a7cc5610afd54323271ec6b966ce0a0ac9fb7be4149da9d9', # v2.0.0.tar.gz + ], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/nanonet2d', 'bin/nanonetcall', 'bin/nanonettrain'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} +sanity_check_commands = ["nanonet2d --help"] + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'bio' -- GitLab From 341de8497d53f7b3844ec9ec30770fbfcc6029a7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 20:51:01 +0200 Subject: [PATCH 573/845] adding easyconfigs: Boost-1.65.1-intel-2017a-Python-2.7.13.eb --- .../Boost-1.65.1-intel-2017a-Python-2.7.13.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..fbc1037c7d --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.65.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = "Boost provides free peer-reviewed portable C++ source libraries." + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['https://sourceforge.net/projects/%(namelower)s/files/%(namelower)s/%(version)s'] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['a13de2c8fbad635e6ba9c8f8714a0e6b4264b60a29b964b940a22554705b6b60'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('Python', '2.7.13'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From 9e5cc648d976a5545b7ea14118f0f416d1a63216 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 21:21:32 +0200 Subject: [PATCH 574/845] add missing Boost & PyYAML dependencies for nanonet + dep pkgs for watchdog --- .../nanonet-2.0.0-intel-2017a-Python-2.7.13.eb | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb index 2408eb945f..29924d9a58 100644 --- a/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/nanonet/nanonet-2.0.0-intel-2017a-Python-2.7.13.eb @@ -16,6 +16,8 @@ dependencies = [ ('Python', '2.7.13'), ('h5py', '2.7.1', versionsuffix), ('netcdf4-python', '1.2.9', versionsuffix), + ('PyYAML', '3.12', versionsuffix), + ('Boost', '1.64.0', versionsuffix), # must stick to 1.64.0, using 1.65.x leads to build failures ] exts_list = [ @@ -26,6 +28,18 @@ exts_list = [ 'ae1d836f0e9c37b90b94c185555e485e2c7e36458a4709e39e4aefc3945fdfd5', # myriad-0.1.4.zip ], }), + ('pathtools', '0.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pathtools'], + 'checksums': [ + '7c35c5421a39bb82e58018febd90e3b6e5db34c5443aaaf742b3f33d4655f1c0', # pathtools-0.1.2.tar.gz + ], + }), + ('argh', '0.26.2', { + 'source_urls': ['https://pypi.python.org/packages/source/a/argh'], + 'checksums': [ + 'e9535b8c84dc9571a48999094fda7f33e63c3f1b74f3e5f3ac0105a58405bb65', # argh-0.26.2.tar.gz + ], + }), ('watchdog', '0.8.3', { 'source_urls': ['https://pypi.python.org/packages/source/w/watchdog'], 'checksums': [ @@ -33,9 +47,9 @@ exts_list = [ ], }), ('nanonet', '2.0.0', { + 'installopts': 'with2d', 'source_tmpl': 'v%(version)s.tar.gz', 'source_urls': ['https://github.com/nanoporetech/nanonet/archive'], - 'installopts': 'with2d', 'checksums': [ '9896fa8ecf012505a7cc5610afd54323271ec6b966ce0a0ac9fb7be4149da9d9', # v2.0.0.tar.gz ], -- GitLab From 8ebf4b78a81a21bd86ff6c9d912d22b1b290366b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 Sep 2017 21:26:21 +0200 Subject: [PATCH 575/845] add easyconfig for Boost dep of nanonet --- .../Boost-1.64.0-intel-2017a-Python-2.7.13.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..4d835046ac --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.64.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = "Boost provides free peer-reviewed portable C++ source libraries." + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['https://sourceforge.net/projects/%(namelower)s/files/%(namelower)s/%(version)s'] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['0445c22a5ef3bd69f5dfb48354978421a85ab395254a26b1ffb0aa1bfd63a108'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('Python', '2.7.13'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From b6000412816293f6a291a3720b17ed0fcabfe14a Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Thu, 21 Sep 2017 09:30:16 +0200 Subject: [PATCH 576/845] Style change to Tensorflow.eb. GitHub changed SHA256 of tgz files. --- .../protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb | 2 +- easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb | 2 +- .../t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb index 1fc0c3020a..764f2a0624 100644 --- a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.3.0-foss-2016b-Python-3.5.2.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] sources = [SOURCE_TAR_GZ] -checksums = ['94c414775f275d876e5e0e4a276527d155ab2d0da45eed6b7734301c330be36e'], +checksums = ['9a36bc1265fa83b8e818714c0d4f08b8cec97a1910de0754a321b11e66eb76de'], dependencies = [ ('Python', '3.5.2'), diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb b/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb index 38730e09d9..317ef5117e 100755 --- a/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb +++ b/easybuild/easyconfigs/p/protobuf/protobuf-3.3.0-foss-2016b.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/'] sources = [SOURCE_TAR_GZ] -checksums = ['94c414775f275d876e5e0e4a276527d155ab2d0da45eed6b7734301c330be36e'] +checksums = ['9a36bc1265fa83b8e818714c0d4f08b8cec97a1910de0754a321b11e66eb76de'] builddependencies = [('Autotools', '20150215')] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb index 3e1b5f606e..d5adabbb69 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.1-foss-2016b-Python-3.5.2.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} exts_defaultclass = 'PythonPackage' pyver = '3.5.2' -pyshortver = '35' +pyshortver = ''.join(pyver.split('.')[:2]) dependencies = [ ('Python', pyver), -- GitLab From 5f8a1212b6faefef5ab436258891459814dc8f9c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 11:51:41 +0200 Subject: [PATCH 577/845] adding easyconfigs: Albacore-2.0.2-intel-2017a-Python-3.6.1.eb, numpy-1.13.1-intel-2017a-Python-3.6.1.eb --- ...Albacore-2.0.2-intel-2017a-Python-3.6.1.eb | 55 +++++++++++++++++++ .../numpy-1.13.1-intel-2017a-Python-3.6.1.eb | 26 +++++++++ 2 files changed, 81 insertions(+) create mode 100644 easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.13.1-intel-2017a-Python-3.6.1.eb diff --git a/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..b4bf5a35ab --- /dev/null +++ b/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,55 @@ +easyblock = 'Bundle' + +name = 'Albacore' +version = '2.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://community.nanoporetech.com/protocols/albacore-offline-basecalli' +description = """Albacore is a software project that provides an entry point to the Oxford Nanopore basecalling + algorithms.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +pyver = '3.6.1' +pymajmin = ''.join(pyver.split('.')[:2]) +dependencies = [ + ('Python', pyver), + ('numpy' ,'1.13.1', versionsuffix), + ('h5py', '2.7.1', versionsuffix), +] + +exts_list = [ + ('ont-fast5-api', '0.4.1', { + 'source_urls': ['https://pypi.python.org/packages/source/o/ont-fast5-api'], + 'checksums': ['9c738b592613f5013c4cd3001c4448b5378454ce92e63ff795d134a4eca30fd0'], + 'modulename': 'ont_fast5_api', + }), + ('progressbar33', '2.4', { + 'source_urls': ['https://pypi.python.org/packages/source/p/progressbar33'], + 'checksums': ['51fe0d9b3b4023db2f983eeccdfc8c9846b84db8443b9bee002c7f58f4376eff'], + 'modulename': 'progressbar', + }), + (name, version, { + 'source_tmpl': 'ont_albacore-%%(version)s-cp%(pyv)s-cp%(pyv)sm-manylinux1_x86_64.whl' % {'pyv': pymajmin}, + 'source_urls': ['https://mirror.oxfordnanoportal.com/software/analysis/'], + 'checksums': ['5473d3cdededf592cff73d8130fa1e483d51e789d46403eec7b5ff3b478db5e2'], + 'unpack_sources': False, + 'use_pip': True, + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/full_1dsq_basecaller.py', 'bin/paired_read_basecaller.py', 'bin/read_fast5_basecaller.py'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} +sanity_check_commands = ["read_fast5_basecaller.py --help"] + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.13.1-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/n/numpy/numpy-1.13.1-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..f74e6368fc --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.13.1-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.13.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] +patches = ['numpy-1.12.0-mkl.patch'] +checksums = [ + 'c9b0283776085cb2804efff73e9955ca279ba4edafd58d3ead70b61d209c4fbb', # numpy-1.13.1.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch +] + +dependencies = [ + ('Python', '3.6.1'), +] + +moduleclass = 'math' -- GitLab From f65829d7c03bc7fd0dd385b26e5cbf485f20c42f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 12:03:10 +0200 Subject: [PATCH 578/845] fix Albacore homepage --- .../a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb index b4bf5a35ab..d897059032 100644 --- a/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb @@ -4,7 +4,7 @@ name = 'Albacore' version = '2.0.2' versionsuffix = '-Python-%(pyver)s' -homepage = 'https://community.nanoporetech.com/protocols/albacore-offline-basecalli' +homepage = 'https://community.nanoporetech.com/protocols/albacore-offline-basecalli/v/abec_2003_v1_revz_29nov2016' description = """Albacore is a software project that provides an entry point to the Oxford Nanopore basecalling algorithms.""" -- GitLab From 68e357cbb6f1b40ad034ff30b34c809b660fe413 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 21 Sep 2017 12:07:19 +0200 Subject: [PATCH 579/845] add sha256 checksum --- .../p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb index ca33a5b257..2899a206f1 100644 --- a/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2016b-Python-2.7.12.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a7dbdac7e2f0c0d2ad98f5f281d5a9d29d6673b3c20210e261b96e9a2d0b6e37'] dependencies = [ ('Python', '2.7.12'), -- GitLab From f6dbde53b3a938046a8de4d7a7304b88eb6d6fc5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 12:26:42 +0200 Subject: [PATCH 580/845] fix style issue --- .../a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb index d897059032..ca51a6691f 100644 --- a/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/a/Albacore/Albacore-2.0.2-intel-2017a-Python-3.6.1.eb @@ -17,7 +17,7 @@ pyver = '3.6.1' pymajmin = ''.join(pyver.split('.')[:2]) dependencies = [ ('Python', pyver), - ('numpy' ,'1.13.1', versionsuffix), + ('numpy', '1.13.1', versionsuffix), ('h5py', '2.7.1', versionsuffix), ] -- GitLab From 1bf6d1e082b1b10787db61f48c4a1bcefbe2c02a Mon Sep 17 00:00:00 2001 From: Xavier Besseron Date: Thu, 21 Sep 2017 12:37:28 +0200 Subject: [PATCH 581/845] Disable optarch --- .../easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb index ec140b0ac3..a30c0a1433 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb @@ -10,6 +10,7 @@ sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://valgrind.org/downloads/'] toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': False} configopts = ' --with-mpicc="$MPICC"' @@ -19,8 +20,7 @@ binaries = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binaries] - + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'files': ['bin/%s' % x for x in binaries] + ['lib/valgrind/libmpiwrap-amd64-linux.so'], 'dirs': [] } -- GitLab From be547d2f4cbb97dd67988df3e02564620b5421e0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 12:39:33 +0200 Subject: [PATCH 582/845] adding easyconfigs: Valgrind-3.13.0-intel-2017a.eb --- .../v/Valgrind/Valgrind-3.13.0-intel-2017a.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb new file mode 100644 index 0000000000..e0b621f67d --- /dev/null +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'Valgrind' +version = '3.13.0' + +homepage = 'http://valgrind.org/downloads/' +description = "Valgrind: Debugging and profiling tools" + +source_urls = [ + 'ftp://sourceware.org/pub/valgrind/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/valgrind/', +] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['d76680ef03f00cd5e970bbdcd4e57fb1f6df7d2e2c071635ef2be74790190c3b'] + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'optarch': False} + +configopts = ' --with-mpicc="$MPICC"' + +binaries = [ + 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', + 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'debugger' -- GitLab From c592a12aa9384645940864f921573e97fb1a8dde Mon Sep 17 00:00:00 2001 From: Xavier Besseron Date: Thu, 21 Sep 2017 12:44:35 +0200 Subject: [PATCH 583/845] Use SHLIB_EXT for shared lib name --- .../easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb index a30c0a1433..52fd021d39 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb @@ -20,7 +20,8 @@ binaries = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binaries] + ['lib/valgrind/libmpiwrap-amd64-linux.so'], + 'files': ['bin/%s' % x for x in binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], 'dirs': [] } -- GitLab From 2af19de7810fa536d6d991d2561242d19bd1f378 Mon Sep 17 00:00:00 2001 From: Xavier Besseron Date: Thu, 21 Sep 2017 12:45:28 +0200 Subject: [PATCH 584/845] Add bonus easyconfig Valgrind-3.11.0-intel-2017a.eb --- .../v/Valgrind/Valgrind-3.11.0-intel-2017a.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb new file mode 100644 index 0000000000..f4ee1bb95d --- /dev/null +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'Valgrind' +version = '3.11.0' + +homepage = 'http://valgrind.org/downloads/' +description = "Valgrind: Debugging and profiling tools" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://valgrind.org/downloads/'] + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'optarch': False} + +configopts = ' --with-mpicc="$MPICC"' + +binaries = [ + 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', + 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'debugger' -- GitLab From 16b0b69c7ec34be7c7779cd9a3e580647ab92184 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Thu, 21 Sep 2017 12:48:41 +0200 Subject: [PATCH 585/845] Added checksums and moved patch into a single line. --- .../b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb b/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb index 059817b2f2..59134e3929 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.1.eb @@ -10,9 +10,11 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +patches = ['Boost-%(version)s_python3.patch'] -patches = [ - 'Boost-%(version)s_python3.patch', +checksums = [ + 'a77c7cc660ec02704c6884fbb20c552d52d60a18f26573c9cee0788bf00ed7e6', # boost_1_61_0.tar.gz + 'c5a19baf309f63c28cf46d6cf1b9f7b9a78a525902a24c5919091d6075926985', # Boost-1.61.0_python3.patch ] dependencies = [ -- GitLab From 28f2063493399254d7665d487181e5d4f1c84d90 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 12:59:02 +0200 Subject: [PATCH 586/845] remove PyCUDA easyconfig for intel/2017a, doesn't work due to incompatibility between GCC 6.3.0 & CUDA 8 --- ...CUDA-2016.1.2-intel-2017a-Python-2.7.13.eb | 31 ------------------- 1 file changed, 31 deletions(-) delete mode 100644 easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2017a-Python-2.7.13.eb deleted file mode 100644 index fd93f89fda..0000000000 --- a/easybuild/easyconfigs/p/PyCUDA/PyCUDA-2016.1.2-intel-2017a-Python-2.7.13.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PyCUDA' -version = '2016.1.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://mathema.tician.de/software/pycuda' -description = """PyCUDA lets you access Nvidia’s CUDA parallel computation API from Python.""" - -toolchain = {'name': 'intel', 'version': '2017a'} - -source_urls = [PYPI_LOWER_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.13'), - ('CUDA', '8.0.61', '', True), - ('Boost', '1.63.0', versionsuffix), -] - -prebuildopts = "./configure.py --cuda-root=$EBROOTCUDA --boost-inc-dir=$EBROOTBOOST/include/boost/ " -prebuildopts += "--boost-lib-dir=$EBROOTBOOST/lib/ --no-use-shipped-boost --boost-python-libname=boost_python && " - -options = {'modulename': '%(namelower)s'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -moduleclass = 'lang' -- GitLab From 0c2105b7a892a0176253a527ab6e36ef854c859f Mon Sep 17 00:00:00 2001 From: Xavier Besseron Date: Thu, 21 Sep 2017 13:01:23 +0200 Subject: [PATCH 587/845] Delete Valgrind-3.11.0-intel-2017a.eb --- .../v/Valgrind/Valgrind-3.11.0-intel-2017a.eb | 28 ------------------- 1 file changed, 28 deletions(-) delete mode 100644 easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb deleted file mode 100644 index f4ee1bb95d..0000000000 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2017a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Valgrind' -version = '3.11.0' - -homepage = 'http://valgrind.org/downloads/' -description = "Valgrind: Debugging and profiling tools" - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://valgrind.org/downloads/'] - -toolchain = {'name': 'intel', 'version': '2017a'} -toolchainopts = {'optarch': False} - -configopts = ' --with-mpicc="$MPICC"' - -binaries = [ - 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', - 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in binaries] - + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], - 'dirs': [] -} - -moduleclass = 'debugger' -- GitLab From f23f51e89d729b585d557b25fd2a0b2d8563cc43 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 13:20:23 +0200 Subject: [PATCH 588/845] move up 'toolchain' spec in Valgrind easyconfig --- .../easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb index e0b621f67d..3dd5dbb5a0 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb @@ -6,6 +6,9 @@ version = '3.13.0' homepage = 'http://valgrind.org/downloads/' description = "Valgrind: Debugging and profiling tools" +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'optarch': False} + source_urls = [ 'ftp://sourceware.org/pub/valgrind/', 'http://www.mirrorservice.org/sites/sourceware.org/pub/valgrind/', @@ -13,9 +16,6 @@ source_urls = [ sources = [SOURCELOWER_TAR_BZ2] checksums = ['d76680ef03f00cd5e970bbdcd4e57fb1f6df7d2e2c071635ef2be74790190c3b'] -toolchain = {'name': 'intel', 'version': '2017a'} -toolchainopts = {'optarch': False} - configopts = ' --with-mpicc="$MPICC"' binaries = [ -- GitLab From 7b2a1dd14f298af7fb66170116d80f07c9894cc1 Mon Sep 17 00:00:00 2001 From: Xavier Besseron Date: Thu, 21 Sep 2017 13:49:25 +0200 Subject: [PATCH 589/845] Cosmetic changes --- .../v/Valgrind/Valgrind-3.11.0-intel-2016a.eb | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb index 52fd021d39..24b8c53bc5 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-intel-2016a.eb @@ -3,15 +3,16 @@ easyblock = 'ConfigureMake' name = 'Valgrind' version = '3.11.0' -homepage = 'http://valgrind.org/downloads/' +homepage = 'http://valgrind.org/' description = "Valgrind: Debugging and profiling tools" -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://valgrind.org/downloads/'] - toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': False} +source_urls = ['http://valgrind.org/downloads/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['6c396271a8c1ddd5a6fb9abe714ea1e8a86fce85b30ab26b4266aeb4c2413b42'] + configopts = ' --with-mpicc="$MPICC"' binaries = [ @@ -20,9 +21,9 @@ binaries = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binaries] - + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'files': ['bin/%s' % x for x in binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], 'dirs': [] -} +} moduleclass = 'debugger' -- GitLab From 38cf4e71a682966a40976afdae6f96c21cf4ca19 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 13:51:58 +0200 Subject: [PATCH 590/845] fix homepage in Valgrind easyconfig --- easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb index 3dd5dbb5a0..ab0e7d94ae 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017a.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'Valgrind' version = '3.13.0' -homepage = 'http://valgrind.org/downloads/' +homepage = 'http://valgrind.org' description = "Valgrind: Debugging and profiling tools" toolchain = {'name': 'intel', 'version': '2017a'} -- GitLab From a36eddd94704b0c828598be653ba2b25fb202450 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 21 Sep 2017 16:28:15 +0200 Subject: [PATCH 591/845] add Template.pm perl module to the extensions list --- .../w/worker/worker-1.6.7-intel-2016b.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb index 3ba6c18a9a..c5f4024ac2 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb @@ -45,6 +45,13 @@ exts_list = [ 'source_tmpl': 'TimeDate-2.30.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], }), + ('Template', '2.27', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': [ + '1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc', # Template-Toolkit-2.27.tar.gz + ], + }), ] modextrapaths = { @@ -62,4 +69,23 @@ postinstallcmds = [ 'sed -i "s@ module_path = .*@ module_path = %(installdir)s/../../../modules/all@g" %(installdir)s/conf/worker.conf', ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in [ + 'dbilogstrip', + 'dbiprof', + 'dbiproxy', + 'tpage', + 'ttree', + 'wcat', + 'wconvert', + 'wload', + 'worker', + 'wreduce', + 'wresume', + 'wsub', + 'wsummarize', + ]], + 'dirs': ['lib/perl', 'lib/tt', 'lib64/perl5'], +} + moduleclass = 'tools' -- GitLab From cfb3f83611bab91f65b2ebb896e70a7d945efcdd Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 21 Sep 2017 16:29:54 +0200 Subject: [PATCH 592/845] add sha256 checksums --- .../w/worker/worker-1.6.7-intel-2016b.eb | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb index c5f4024ac2..c2b7efd3e7 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = ['https://github.com/gjbex/worker/archive/'] sources = ['%(version)s.tar.gz'] +checksums = ['350ffa36c792c5733ae202e76cc266648fca1311a835e9d73c98ed4f13a6835f'] tcname = 'intel' tcver = '2016b' @@ -24,26 +25,44 @@ exts_list = [ ('Config::General', '2.61', { 'source_tmpl': 'Config-General-2.61.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': [ + '379a160ddac33c02045d2b7e20b37ca9b155722ce20374f9f245e519f7d7a6ca', # Config-General-2.61.tar.gz + ], }), ('IO::Stringy', '2.111', { 'source_tmpl': 'IO-stringy-2.111.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': [ + '8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d', # IO-stringy-2.111.tar.gz + ], }), ('Text::CSV', '1.33', { 'source_tmpl': 'Text-CSV-1.33.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + 'checksums': [ + '9c5b8fb9baffd58f02ed2b3f0b6d9a6454198f18a80e7f3a049680ddbdb24115', # Text-CSV-1.33.tar.gz + ], }), ('DBI', '1.636', { 'source_tmpl': 'DBI-1.636.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': [ + '8f7ddce97c04b4b7a000e65e5d05f679c964d62c8b02c94c1a7d815bb2dd676c', # DBI-1.636.tar.gz + ], }), ('DBD::SQLite', '1.50', { 'source_tmpl': 'DBD-SQLite-1.50.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': [ + '3ac513ab73944fd7d4b672e1fe885dc522b6369d38f46a68e67e0045bf159ce1', # DBD-SQLite-1.50.tar.gz + ], }), ('Date::Language', '2.30', { 'source_tmpl': 'TimeDate-2.30.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': [ + '75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86', # TimeDate-2.30.tar.gz + ], }), ('Template', '2.27', { 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', -- GitLab From 978c7f3786d0bafe93a21c8b7c632c5d0ee363b3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 16:35:15 +0200 Subject: [PATCH 593/845] {cae}[intel/2017a] OpenFOAM-Extend v4.0 --- .../h/hwloc/hwloc-1.11.8-intel-2017a.eb | 37 +++++++++++++++ .../m/Mesquite/Mesquite-2.3.0-intel-2017a.eb | 15 ++++++ .../OpenFOAM-Extend-4.0-intel-2017a.eb | 46 +++++++++++++++++++ .../ParMGridGen-1.0-intel-2017a.eb | 27 +++++++++++ 4 files changed, 125 insertions(+) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-intel-2017a.eb create mode 100644 easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-intel-2017a.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-intel-2017a.eb new file mode 100644 index 0000000000..619573b44d --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-intel-2017a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.8' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' + +description = """ + The Portable Hardware Locality (hwloc) software package provides a portable + abstraction (across OS, versions, architectures, ...) of the hierarchical + topology of modern architectures, including NUMA memory nodes, sockets, shared + caches, cores and simultaneous multithreading. It also gathers various system + attributes such as cache and memory information as well as the locality of I/O + devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily + aims at helping applications with gathering information about modern computing + hardware so as to exploit it accordingly and efficiently. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] +checksums = ['8af89b1164a330e36d18210360ea9bb305e19f9773d1c882855d261a13054ea8'] + +dependencies = [ + ('numactl', '2.0.11'), +] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +sanity_check_paths = { + 'files': ['bin/lstopo', 'include/hwloc/linux.h', 'sbin/hwloc-dump-hwdata', + 'lib/libhwloc.%s' % SHLIB_EXT], + 'dirs': ['share/man/man3'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb new file mode 100644 index 0000000000..dc505ca541 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'Mesquite' +version = '2.3.0' + +homepage = 'https://software.sandia.gov/mesquite/' +description = """Mesh-Quality Improvement Library""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://software.sandia.gov/mesquite/'] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb new file mode 100644 index 0000000000..b2fc23dde1 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb @@ -0,0 +1,46 @@ +easyblock = 'EB_OpenFOAM' + +name = 'OpenFOAM-Extend' +version = '4.0' + +homepage = 'http://www.extend-project.de/' +description = """OpenFOAM is a free, open source CFD software package. +OpenFOAM has an extensive range of features to solve anything from complex fluid flows +involving chemical reactions, turbulence and heat transfer, +to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/Unofficial-Extend-Project-Mirror/foam-extend-foam-extend-%(version)s/archive'] +sources = ['v%(version)s.tar.gz'] + +patches = [ + 'OpenFOAM-Extend-3.2-ParMGridGen.patch', + 'OpenFOAM-Extend-3.1_build-qa.patch', + 'OpenFOAM-Extend-3.1_comp-mpi.patch', + 'OpenFOAM-Extend-3.1_skip-ThirdParty-OpenMPI.patch', +] + +dependencies = [ + ('hwloc', '1.11.8'), + ('ParMETIS', '4.0.3'), + ('METIS', '5.1.0'), # order matters, METIS need to be listed after ParMETIS to get $CPATH right + ('SCOTCH', '6.0.4'), + ('Mesquite', '2.3.0'), + ('ParMGridGen', '1.0'), + ('Python', '2.7.13'), + # Libccmio v2.6.1, zoltan v3.5 +] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + ('M4', '1.4.18'), + ('CMake', '3.9.1'), +] + +# too many builds in parallel actually slows down the build +maxparallel = 4 + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb new file mode 100644 index 0000000000..2254b7c913 --- /dev/null +++ b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb @@ -0,0 +1,27 @@ +easyblock = 'MakeCp' + +name = 'ParMGridGen' +version = '1.0' + +homepage = 'http://www-users.cs.umn.edu/~moulitsa/software.html' +description = """ParMGridGen is an MPI-based parallel library that is based on the serial package MGridGen, + that implements (serial) algorithms for obtaining a sequence of successive coarse grids that are well-suited + for geometric multigrid methods.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['http://www-users.cs.umn.edu/~moulitsa/download/'] +sources = [SOURCE_TAR_GZ] + +patches = ['ParMGridGen-1.0_malloc_include.patch'] + +buildopts = 'parallel CC="$CC" PARCC="$CC" PARLD="$CC" COPTIONS="$CFLAGS" LDOPTIONS="$CFLAGS" BINDIR="."' + +files_to_copy = [ + (['MGridGen/Programs/mgridgen', 'ParMGridGen/Programs/parmgridgen'], 'bin'), + (['mgridgen.h', 'parmgridgen.h'], 'include'), + (['libmgrid.a', 'libparmgrid.a'], 'lib'), +] + +moduleclass = 'math' -- GitLab From 5c968a6a71bc84949e2fa413d5342d71a5651eb9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 17:03:20 +0200 Subject: [PATCH 594/845] add checksums for OpenFOAM-Extend 4.0 + Mesquite & ParMGridGen deps --- .../easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb | 1 + .../o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb | 9 ++++++++- .../p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb | 5 ++++- 3 files changed, 13 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb index dc505ca541..15596337b3 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-intel-2017a.eb @@ -11,5 +11,6 @@ toolchainopts = {'pic': True} source_urls = ['https://software.sandia.gov/mesquite/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['4ab4ceadfa596e16c00dbb0e8b830a9112fa1b73291ca07633ec379a39b8bb28'] moduleclass = 'math' diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb index b2fc23dde1..d591d79e9a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-4.0-intel-2017a.eb @@ -14,13 +14,20 @@ toolchainopts = {'usempi': True} source_urls = ['https://github.com/Unofficial-Extend-Project-Mirror/foam-extend-foam-extend-%(version)s/archive'] sources = ['v%(version)s.tar.gz'] - patches = [ 'OpenFOAM-Extend-3.2-ParMGridGen.patch', 'OpenFOAM-Extend-3.1_build-qa.patch', 'OpenFOAM-Extend-3.1_comp-mpi.patch', 'OpenFOAM-Extend-3.1_skip-ThirdParty-OpenMPI.patch', ] +checksums = [ + '5c64fcf443ae60760fcc13573ed7a8eddeddd0d511be7bc224f9eda5ab65c5da', # v4.0.tar.gz + 'f7676a7a12ced7c74caea64c62826a28449fdb2beb8b5be2c4ae7528ffece16e', # OpenFOAM-Extend-3.2-ParMGridGen.patch + '14dcc12ea7191ba42a9c297fcb2f4fbc2c55bf57226029489aa116e2d060b4bf', # OpenFOAM-Extend-3.1_build-qa.patch + '89fe47abec4cd9dbe863887140421e803e16801655bb2c7fb7bb1ac8532861ca', # OpenFOAM-Extend-3.1_comp-mpi.patch + # OpenFOAM-Extend-3.1_skip-ThirdParty-OpenMPI.patch + 'c88b23cd2f5dcf3bd86e02d7ea5dc6719c2049cf4b20e39f1b3262381dee3c50', +] dependencies = [ ('hwloc', '1.11.8'), diff --git a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb index 2254b7c913..e697f5d9d6 100644 --- a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb +++ b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-intel-2017a.eb @@ -13,8 +13,11 @@ toolchainopts = {'usempi': True, 'pic': True} source_urls = ['http://www-users.cs.umn.edu/~moulitsa/download/'] sources = [SOURCE_TAR_GZ] - patches = ['ParMGridGen-1.0_malloc_include.patch'] +checksums = [ + '62cdb6e48cfc59124e5d5d360c2841e0fc2feecafe65bda110b74e942740b395', # ParMGridGen-1.0.tar.gz + '3e0d72f82b3b56cbfcb1e3c9afc6594eb25316a0faeb49237faa8d969b4daeaa', # ParMGridGen-1.0_malloc_include.patch +] buildopts = 'parallel CC="$CC" PARCC="$CC" PARLD="$CC" COPTIONS="$CFLAGS" LDOPTIONS="$CFLAGS" BINDIR="."' -- GitLab From 8d05a0ec6b33c6c71258d42094cd8dcec075f309 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 Sep 2017 21:46:37 +0200 Subject: [PATCH 595/845] add additional patch for Boost 1.64.0 to fix issue with use of boost/serialization/detail/get_data.hpp --- .../b/Boost/Boost-1.64.0-intel-2017a.eb | 6 +- ...-boost-serialization-detail-get_data.patch | 123 ++++++++++++++++++ 2 files changed, 128 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-boost-serialization-detail-get_data.patch diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb index 446a15ecf7..299cf50394 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb @@ -9,10 +9,14 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] -patches = ['Boost-%(version)s_fix-include-array_wrapper.patch'] +patches = [ + 'Boost-%(version)s_fix-include-array_wrapper.patch', + 'Boost-%(version)s_fix-boost-serialization-detail-get_data.patch', +] checksums = [ '0445c22a5ef3bd69f5dfb48354978421a85ab395254a26b1ffb0aa1bfd63a108', # boost_1_64_0.tar.gz 'aaf0657246d9cde4857954b6d1b9f9454370896b2077294461357d47951ca891', # Boost-1.64.0_fix-include-array_wrapper.patch + '5a569ac999bc3b6bf6386f2e37249f86137eec39a3649ab8a454479ca1ac7d9f', # Boost-1.64.0_fix-boost-serialization-detail-get_data.patch ] dependencies = [ diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-boost-serialization-detail-get_data.patch b/easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-boost-serialization-detail-get_data.patch new file mode 100644 index 0000000000..2557991603 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.64.0_fix-boost-serialization-detail-get_data.patch @@ -0,0 +1,123 @@ +fix for: catastrophic error: cannot open source file "boost/serialization/detail/get_data.hpp" +see https://github.com/boostorg/mpi/pull/49 +--- /dev/null ++++ b/include/boost/mpi/detail/antiques.hpp +@@ -0,0 +1,29 @@ ++// Copyright Alain Miniussi 2014. ++// Distributed under the Boost Software License, Version 1.0. ++// (See accompanying file LICENSE_1_0.txt or copy at ++// http://www.boost.org/LICENSE_1_0.txt) ++ ++// Authors: Alain Miniussi ++ ++#ifndef BOOST_MPI_ANTIQUES_HPP ++#define BOOST_MPI_ANTIQUES_HPP ++ ++#include ++ ++// Support for some obsolette compilers ++ ++namespace boost { namespace mpi { ++ namespace detail { ++ // Some old gnu compiler have no support for vector<>::data ++ // Use this in the mean time, the cumbersome syntax should ++ // serve as an incentive to get rid of this when those compilers ++ // are dropped. ++ template ++ T* c_data(std::vector& v) { return &(v[0]); } ++ ++ template ++ T const* c_data(std::vector const& v) { return &(v[0]); } ++ ++} } } ++ ++#endif +diff --git a/include/boost/mpi/detail/mpi_datatype_primitive.hpp b/include/boost/mpi/detail/mpi_datatype_primitive.hpp +index c230055..b2263fa 100644 +--- a/include/boost/mpi/detail/mpi_datatype_primitive.hpp ++++ b/include/boost/mpi/detail/mpi_datatype_primitive.hpp +@@ -25,10 +25,10 @@ namespace std{ + #include + #include + #include +-#include + #include + #include + #include ++#include + + namespace boost { namespace mpi { namespace detail { + +@@ -80,18 +80,18 @@ class mpi_datatype_primitive + BOOST_MPI_CHECK_RESULT(MPI_Type_create_struct, + ( + addresses.size(), +- boost::serialization::detail::get_data(lengths), +- boost::serialization::detail::get_data(addresses), +- boost::serialization::detail::get_data(types), ++ c_data(lengths), ++ c_data(addresses), ++ c_data(types), + &datatype_ + )); + #else + BOOST_MPI_CHECK_RESULT(MPI_Type_struct, + ( + addresses.size(), +- boost::serialization::detail::get_data(lengths), +- boost::serialization::detail::get_data(addresses), +- boost::serialization::detail::get_data(types), ++ c_data(lengths), ++ c_data(addresses), ++ c_data(types), + &datatype_ + )); + #endif +diff --git a/include/boost/mpi/detail/packed_iprimitive.hpp b/include/boost/mpi/detail/packed_iprimitive.hpp +index 7080cbf..69d2c73 100644 +--- a/include/boost/mpi/detail/packed_iprimitive.hpp ++++ b/include/boost/mpi/detail/packed_iprimitive.hpp +@@ -16,8 +16,8 @@ + #include + #include + #include +-#include + #include ++#include + #include + + namespace boost { namespace mpi { +@@ -104,7 +104,7 @@ class BOOST_MPI_DECL packed_iprimitive + void load_impl(void * p, MPI_Datatype t, int l) + { + BOOST_MPI_CHECK_RESULT(MPI_Unpack, +- (const_cast(boost::serialization::detail::get_data(buffer_)), buffer_.size(), &position, p, l, t, comm)); ++ (const_cast(detail::c_data(buffer_)), buffer_.size(), &position, p, l, t, comm)); + } + + buffer_type & buffer_; +diff --git a/include/boost/mpi/detail/packed_oprimitive.hpp b/include/boost/mpi/detail/packed_oprimitive.hpp +index 5b6b3b2..1cb4ba0 100644 +--- a/include/boost/mpi/detail/packed_oprimitive.hpp ++++ b/include/boost/mpi/detail/packed_oprimitive.hpp +@@ -15,7 +15,7 @@ + + #include + #include +-#include ++#include + #include + #include + #include +@@ -98,7 +98,10 @@ class BOOST_MPI_DECL packed_oprimitive + + // pack the data into the buffer + BOOST_MPI_CHECK_RESULT(MPI_Pack, +- (const_cast(p), l, t, boost::serialization::detail::get_data(buffer_), buffer_.size(), &position, comm)); ++ (const_cast(p),l,t, ++ detail::c_data(buffer_), ++ buffer_.size(), ++ &position,comm)); + // reduce the buffer size if needed + BOOST_ASSERT(std::size_t(position) <= buffer_.size()); + if (std::size_t(position) < buffer_.size()) -- GitLab From 08f0ad986be135b067ab320e8b41fc84a811e2d9 Mon Sep 17 00:00:00 2001 From: John Donners Date: Fri, 22 Sep 2017 08:47:51 +0200 Subject: [PATCH 596/845] Fixed sanity check, changed class --- .../easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb index cc85bcdf97..91bde2ba50 100644 --- a/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/NEST/NEST-2.12.0-foss-2015b-Python-2.7.9.eb @@ -37,8 +37,8 @@ modextrapaths = { } sanity_check_paths = { - 'files': ['bin/nest', 'lib/libnest.so', 'lib/libmodels.so'], + 'files': ['bin/nest', 'lib/libnest.%s' % SHLIB_EXT, 'lib/libmodels.%s' % SHLIB_EXT], 'dirs': ['lib/python%(pyshortver)s/site-packages'], } -moduleclass = 'math' +moduleclass = 'bio' -- GitLab From b492aae72818d2f9fd5502941bde40bc4582b436 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Fri, 22 Sep 2017 09:48:54 +0200 Subject: [PATCH 597/845] adding easyconfigs: REMORA-1.8.2-goolf-1.7.20.eb --- .../r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb diff --git a/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb new file mode 100644 index 0000000000..cdf2dfc565 --- /dev/null +++ b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'PackedBinary' + +name = "REMORA" +version = "1.8.2" + +homepage = 'https://github.com/TACC/remora' +description = """REsource MOnitoring for Remote Applications""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['https://github.com/TACC/remora/archive/'] +sources = ['v%(version)s.tar.gz'] + +unpack_options = '--strip-components=1' + +install_cmd = 'REMORA_INSTALL_PREFIX=%(installdir)s ./install.sh' + +modextravars = { + 'REMORA_BIN': '%(installdir)s/bin', +} + +sanity_check_paths = { + 'files': ['bin/remora'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From b2f87bd773ab5addcb040d730bacdbddb56d7d2c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 22 Sep 2017 11:44:30 +0200 Subject: [PATCH 598/845] fix long line in Boost 1.64.0 easyconfig --- easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb index 299cf50394..bba859d9da 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.64.0-intel-2017a.eb @@ -16,7 +16,8 @@ patches = [ checksums = [ '0445c22a5ef3bd69f5dfb48354978421a85ab395254a26b1ffb0aa1bfd63a108', # boost_1_64_0.tar.gz 'aaf0657246d9cde4857954b6d1b9f9454370896b2077294461357d47951ca891', # Boost-1.64.0_fix-include-array_wrapper.patch - '5a569ac999bc3b6bf6386f2e37249f86137eec39a3649ab8a454479ca1ac7d9f', # Boost-1.64.0_fix-boost-serialization-detail-get_data.patch + # Boost-1.64.0_fix-boost-serialization-detail-get_data.patch + '5a569ac999bc3b6bf6386f2e37249f86137eec39a3649ab8a454479ca1ac7d9f', ] dependencies = [ -- GitLab From 689a325a1a3734338516fc4923188ba7534dfb92 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 22 Sep 2017 12:29:59 +0200 Subject: [PATCH 599/845] Boost 1.65.1 for latest foss and intel toolchains (no Python) --- .../b/Boost/Boost-1.65.1-foss-2017a.eb | 24 +++++++++++++++++++ .../b/Boost/Boost-1.65.1-foss-2017b.eb | 24 +++++++++++++++++++ .../b/Boost/Boost-1.65.1-intel-2017a.eb | 24 +++++++++++++++++++ .../b/Boost/Boost-1.65.1-intel-2017b.eb | 24 +++++++++++++++++++ 4 files changed, 96 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017a.eb create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017b.eb create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a.eb create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017b.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017a.eb new file mode 100644 index 0000000000..c7a4b5126f --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017a.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.65.1' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['a13de2c8fbad635e6ba9c8f8714a0e6b4264b60a29b964b940a22554705b6b60'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017b.eb b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017b.eb new file mode 100644 index 0000000000..a4f147a109 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-foss-2017b.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.65.1' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['a13de2c8fbad635e6ba9c8f8714a0e6b4264b60a29b964b940a22554705b6b60'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a.eb new file mode 100644 index 0000000000..b793a8e7ee --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017a.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.65.1' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['a13de2c8fbad635e6ba9c8f8714a0e6b4264b60a29b964b940a22554705b6b60'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017b.eb b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017b.eb new file mode 100644 index 0000000000..72f58c1d24 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.65.1-intel-2017b.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.65.1' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +checksums = ['a13de2c8fbad635e6ba9c8f8714a0e6b4264b60a29b964b940a22554705b6b60'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From e8f97f020cdb72da5b6e8ef46f1534a17cd78d19 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 22 Sep 2017 14:51:43 +0200 Subject: [PATCH 600/845] fix remarks in REMORA easyconfig --- .../r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb | 21 ++++++++----------- 1 file changed, 9 insertions(+), 12 deletions(-) diff --git a/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb index cdf2dfc565..9ae5e9ebf1 100644 --- a/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-goolf-1.7.20.eb @@ -1,32 +1,29 @@ # This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ # Author: Pablo Escobar Lopez # sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics +# SIB Swiss Institute of Bioinformatics easyblock = 'PackedBinary' -name = "REMORA" -version = "1.8.2" +name = 'REMORA' +version = '1.8.2' homepage = 'https://github.com/TACC/remora' -description = """REsource MOnitoring for Remote Applications""" +description = "REsource MOnitoring for Remote Applications" toolchain = {'name': 'goolf', 'version': '1.7.20'} source_urls = ['https://github.com/TACC/remora/archive/'] sources = ['v%(version)s.tar.gz'] +checksums = ['140f71671787a49af822e97226c60db208b9ff6f3bf20556eac5b8c59e9fd42b'] -unpack_options = '--strip-components=1' - -install_cmd = 'REMORA_INSTALL_PREFIX=%(installdir)s ./install.sh' - -modextravars = { - 'REMORA_BIN': '%(installdir)s/bin', -} +install_cmd = 'cd remora-%(version)s && REMORA_INSTALL_PREFIX=%(installdir)s ./install.sh' sanity_check_paths = { - 'files': ['bin/remora'], + 'files': ['bin/mpstat', 'bin/remora', 'lib/libmpiP.a', 'lib/libmpiP.%s' % SHLIB_EXT], 'dirs': [] } +modextravars = {'REMORA_BIN': '%(installdir)s/bin'} + moduleclass = 'tools' -- GitLab From 8251ccb357ce22dc1631574b358d4a982730c9e0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 22 Sep 2017 14:56:53 +0200 Subject: [PATCH 601/845] add easyconfigs for REMORA with foss/2017a and intel/2017a --- .../r/REMORA/REMORA-1.8.2-foss-2017a.eb | 29 +++++++++++++++++++ .../r/REMORA/REMORA-1.8.2-intel-2017a.eb | 29 +++++++++++++++++++ 2 files changed, 58 insertions(+) create mode 100644 easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-foss-2017a.eb create mode 100644 easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-intel-2017a.eb diff --git a/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-foss-2017a.eb b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-foss-2017a.eb new file mode 100644 index 0000000000..711bd6825e --- /dev/null +++ b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-foss-2017a.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'PackedBinary' + +name = 'REMORA' +version = '1.8.2' + +homepage = 'https://github.com/TACC/remora' +description = "REsource MOnitoring for Remote Applications" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['https://github.com/TACC/remora/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['140f71671787a49af822e97226c60db208b9ff6f3bf20556eac5b8c59e9fd42b'] + +install_cmd = 'cd remora-%(version)s && REMORA_INSTALL_PREFIX=%(installdir)s ./install.sh' + +sanity_check_paths = { + 'files': ['bin/mpstat', 'bin/remora', 'lib/libmpiP.a', 'lib/libmpiP.%s' % SHLIB_EXT], + 'dirs': [] +} + +modextravars = {'REMORA_BIN': '%(installdir)s/bin'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-intel-2017a.eb b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-intel-2017a.eb new file mode 100644 index 0000000000..6ac17a4b99 --- /dev/null +++ b/easybuild/easyconfigs/r/REMORA/REMORA-1.8.2-intel-2017a.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'PackedBinary' + +name = 'REMORA' +version = '1.8.2' + +homepage = 'https://github.com/TACC/remora' +description = "REsource MOnitoring for Remote Applications" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/TACC/remora/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['140f71671787a49af822e97226c60db208b9ff6f3bf20556eac5b8c59e9fd42b'] + +install_cmd = 'cd remora-%(version)s && REMORA_INSTALL_PREFIX=%(installdir)s ./install.sh' + +sanity_check_paths = { + 'files': ['bin/mpstat', 'bin/remora'], + 'dirs': [] +} + +modextravars = {'REMORA_BIN': '%(installdir)s/bin'} + +moduleclass = 'tools' -- GitLab From d98a208d742d3433e228622b73046456b9fcc385 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 22 Sep 2017 16:06:24 +0200 Subject: [PATCH 602/845] Here is the actual file --- .../g/git/git-2.14.1-GCCcore-6.4.0.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..2131b6050d --- /dev/null +++ b/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'git' +version = '2.14.1' + +homepage = 'http://git-scm.com/' +description = """Git is a free and open source distributed version control system designed +to handle everything from small to very large projects with speed and efficiency.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/git/git/archive'] +checksums = ['ccc366d5d674fb755fd98d219c23f2b4e5da8a49d8582a6314813b280d75536b'] + +dependencies = [ + ('cURL', '7.55.1'), + ('expat', '2.2.4'), + ('gettext', '0.19.8.1'), + ('Perl', '5.26.0'), +] + +preconfigopts = 'make configure && ' + +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--with-perl=${EBROOTPERL}/bin/perl --enable-pthreads='-lpthread'" + +sanity_check_paths = { + 'files': ['bin/git'], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From fd91e00a3d839815cf2ac5054522b605fd79bbd8 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 22 Sep 2017 16:55:23 +0200 Subject: [PATCH 603/845] Added binutils as build dependency --- easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb index 2131b6050d..6ddfd56f5a 100644 --- a/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb @@ -13,6 +13,10 @@ sources = ['v%(version)s.tar.gz'] source_urls = ['https://github.com/git/git/archive'] checksums = ['ccc366d5d674fb755fd98d219c23f2b4e5da8a49d8582a6314813b280d75536b'] +builddependencies = [ + ('binutils', '2.28'), +] + dependencies = [ ('cURL', '7.55.1'), ('expat', '2.2.4'), -- GitLab From c40d7069a3a3d4a3219cffc1d0f6f17260101b2b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 22 Sep 2017 19:48:52 +0200 Subject: [PATCH 604/845] fix checksums for packages that download from github.com/x/y/archive --- .../AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb | 2 +- .../a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb | 6 +++++- .../a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb | 7 ++++++- .../a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb | 6 +++++- .../a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb | 7 ++++++- .../a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb | 2 +- .../a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb | 2 +- .../k/kallisto/kallisto-0.43.1-foss-2016b.eb | 2 +- .../Lucene-Geo-Gazetteer-20170718.eb | 2 +- .../MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb | 10 +++++----- .../o/OpenFOAM/OpenFOAM-3.0.1-intel-2016b.eb | 5 ++++- .../easyconfigs/o/OpenFOAM/OpenFOAM-4.0-foss-2016b.eb | 5 ++++- .../easyconfigs/o/OpenFOAM/OpenFOAM-4.0-intel-2016b.eb | 5 ++++- .../easyconfigs/o/OpenFOAM/OpenFOAM-4.1-foss-2016b.eb | 5 ++++- .../easyconfigs/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb | 5 ++++- .../easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb | 6 +++++- easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb | 2 +- .../easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb | 2 +- 18 files changed, 59 insertions(+), 22 deletions(-) diff --git a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb index 50e7938a22..9089ed3e82 100644 --- a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb @@ -18,7 +18,7 @@ sources = ['v%(version)s.tar.gz'] files_to_copy = [(['build/%(name)s'], 'bin'), (['build/%(name)s.1'], 'share/man/man1')] -checksums = ['159e5c7c527dde70eac444a87bf5fbfc'] +checksums = ['20fdbdef2ecfd74af8d078f3f63e9444926dab1dd02b7dcef7c2aee77cb73b60'] dependencies = [ ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb index 4562fea8de..66c7769216 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb @@ -13,7 +13,11 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['ae659c8c6f8857f4850a5bcd4f97b23f'] +checksums = [ + '13ac771c2a28cc4b7d770c85525894d230c705f151d90b42d3f4982ed1dfda53', # 3.1.3.tar.gz + '928b71003a99b04fb205edd59473dd2fd84f6581c3e79c49d915e78a2395d8d7', # arpack-ng-3.1.3-update-to-head.patch + 'd2b3885eccba3d0dd2272969b14baa2d22deaa830c21c508b12687fc7aaeca06', # arpack-ng-3.1.3-pkgconfig.patch +] # do not change the order of the patches or things will break patches = [ diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb index 36abbfba39..f319e77d02 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb @@ -12,7 +12,12 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['ae659c8c6f8857f4850a5bcd4f97b23f'] +checksums = [ + '13ac771c2a28cc4b7d770c85525894d230c705f151d90b42d3f4982ed1dfda53', # 3.1.3.tar.gz + '928b71003a99b04fb205edd59473dd2fd84f6581c3e79c49d915e78a2395d8d7', # arpack-ng-3.1.3-update-to-head.patch + 'd2b3885eccba3d0dd2272969b14baa2d22deaa830c21c508b12687fc7aaeca06', # arpack-ng-3.1.3-pkgconfig.patch + '6dc832bc4458c30a67f9d6348e60bee9ed9ddb413a54418e706661ef74695910', # arpack-ng-3.1.3-configure-mpi.patch +] # do not change the order of the patches or things will break patches = [ diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb index a63af2d197..18c202769e 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb @@ -13,7 +13,11 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['ae659c8c6f8857f4850a5bcd4f97b23f'] +checksums = [ + '13ac771c2a28cc4b7d770c85525894d230c705f151d90b42d3f4982ed1dfda53', # 3.1.3.tar.gz + '928b71003a99b04fb205edd59473dd2fd84f6581c3e79c49d915e78a2395d8d7', # arpack-ng-3.1.3-update-to-head.patch + 'd2b3885eccba3d0dd2272969b14baa2d22deaa830c21c508b12687fc7aaeca06', # arpack-ng-3.1.3-pkgconfig.patch +] # do not change the order of the patches or things will break patches = [ diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb index e390bd7768..a0635d43bd 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb @@ -12,7 +12,12 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['ae659c8c6f8857f4850a5bcd4f97b23f'] +checksums = [ + '13ac771c2a28cc4b7d770c85525894d230c705f151d90b42d3f4982ed1dfda53', # 3.1.3.tar.gz + '928b71003a99b04fb205edd59473dd2fd84f6581c3e79c49d915e78a2395d8d7', # arpack-ng-3.1.3-update-to-head.patch + 'd2b3885eccba3d0dd2272969b14baa2d22deaa830c21c508b12687fc7aaeca06', # arpack-ng-3.1.3-pkgconfig.patch + '6dc832bc4458c30a67f9d6348e60bee9ed9ddb413a54418e706661ef74695910', # arpack-ng-3.1.3-configure-mpi.patch +] # do not change the order of the patches or things will break patches = [ diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb index b22908df9d..a8e1f0cfdf 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb @@ -13,7 +13,7 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['d84e1b6108d9ee67c0d21aba7099e953'] +checksums = ['f609d001a247195c019626cb0f2144db7b08c83f53d875dcdeeee4cdb0609098'] configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb index cdb3eae35c..c29fa0b72d 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb @@ -12,7 +12,7 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['d84e1b6108d9ee67c0d21aba7099e953'] +checksums = ['f609d001a247195c019626cb0f2144db7b08c83f53d875dcdeeee4cdb0609098'] configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb index 54e8f3a226..a67d509532 100644 --- a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb @@ -15,7 +15,7 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://github.com/pachterlab/kallisto/archive/'] sources = ['v%(version)s.tar.gz'] -checksums = ['7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400'] +checksums = ['2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e'] builddependencies = [('CMake', '3.7.2')] diff --git a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb index c21c6baf85..6aab03ee44 100644 --- a/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb +++ b/easybuild/easyconfigs/l/Lucene-Geo-Gazetteer/Lucene-Geo-Gazetteer-20170718.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = ['https://github.com/chrismattmann/lucene-geo-gazetteer/archive/'] sources = [{'filename': SOURCE_TAR_GZ, 'download_filename': '6c38272.tar.gz'}] -checksums = ['2ed355bfdcf865d815df9dc52ee747eeb8a15d065ef159ebf933ad36e1555ad4'] +checksums = ['c9d1412ecef1f2c04937c2ee7acec325e5cbb1fb7fbe525bdd59c9109a790494'] builddependencies = [('Maven', '3.5.0')] dependencies = [('Java', '1.8.0_144')] diff --git a/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb b/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb index ba00fd6f18..b2b5f4620d 100644 --- a/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb +++ b/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb @@ -21,11 +21,11 @@ sources = [ ] checksums = [ - "84971e4a0e2e9db3757623657aa5b9ec", # v0.9.3.tar.gz - "12c96664978c545a7269b93635719b18", # 6856021ca925c7.tar.gz - "3dc48183e123c650707bcf26a9254941", # c29ac58320d7b0.tar.gz - "fb04cb1694f1e66591a31a18bc92b451", # 0d64855f741e04.tar.gz - "da873c881758c0e10ac0928f86568456", # b32ec4aee65a66.tar.gz + 'c8d1e6d8a178e475625e60a8fd71b49efbd7c8a2b222300858f50201d89127e3', # v0.9.3.tar.gz + '5a7aa092ae2cca51bf068b152908d0e4407daa3f5c281d56e3dbf2effeb0721a', # 6856021ca925c7.tar.gz + '53265bd2157258eac42d614f60f9987c66bc7017cb75cfbc7774f44bd7c4fb66', # c29ac58320d7b0.tar.gz + '7cabefb333acb77d81fdb747dbe911b13a6df1e093c7e3a804d9dca10341666d', # 0d64855f741e04.tar.gz + 'a825082d8d495ca5bc228277bc075c91d1cf0e255632ac7952564e53bf8f0d2f', # b32ec4aee65a66.tar.gz ] dependencies = [ diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.1-intel-2016b.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.1-intel-2016b.eb index 065d8bedfb..566f734948 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.1-intel-2016b.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.1-intel-2016b.eb @@ -13,7 +13,10 @@ toolchainopts = {'cstd': 'c++11'} source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major_minor)s.x/archive'] sources = ['version-%(version)s.tar.gz'] -checksums = ['a6ffe3edabdd23f9eff31be47a092b07'] +checksums = [ + '4b7d25a17f5fb075e206d7fbdf863253335f705538df6404c6ca44f6147953c3', # version-3.0.1.tar.gz + '251833f259d25f82808fe59869797c11a9a7d10d37f71d6a8cf92d108a35fd4c', # OpenFOAM-3.0.1_cleanup.patch +] patches = ['OpenFOAM-%(version)s_cleanup.patch'] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-foss-2016b.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-foss-2016b.eb index 3db67b3e22..aca1f74b1d 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-foss-2016b.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-foss-2016b.eb @@ -13,7 +13,10 @@ toolchainopts = {'cstd': 'c++11'} source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive'] sources = ['version-%(version)s.tar.gz'] -checksums = ['294b520811aae87241f3a78423f05952'] +checksums = [ + '73aebe35a1134b1b51dcacc23c097a38e492c3bdb1dcc5d1fb3ca81c4c61df49', # version-4.0.tar.gz + '7451b71741347f230689f18462824ebb9e42e80b1d0894d2a72af01a998d524c', # OpenFOAM-4.0-cleanup.patch +] patches = ['OpenFOAM-%(version)s-cleanup.patch'] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-intel-2016b.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-intel-2016b.eb index 635072f873..581812bf13 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-intel-2016b.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.0-intel-2016b.eb @@ -13,7 +13,10 @@ toolchainopts = {'cstd': 'c++11'} source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive'] sources = ['version-%(version)s.tar.gz'] -checksums = ['294b520811aae87241f3a78423f05952'] +checksums = [ + '73aebe35a1134b1b51dcacc23c097a38e492c3bdb1dcc5d1fb3ca81c4c61df49', # version-4.0.tar.gz + '7451b71741347f230689f18462824ebb9e42e80b1d0894d2a72af01a998d524c', # OpenFOAM-4.0-cleanup.patch +] patches = ['OpenFOAM-%(version)s-cleanup.patch'] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-foss-2016b.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-foss-2016b.eb index eea7c1b416..0c1616045a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-foss-2016b.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-foss-2016b.eb @@ -13,7 +13,10 @@ toolchainopts = {'cstd': 'c++11'} source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive'] sources = ['version-%(version)s.tar.gz'] -checksums = ['318a446c4ae6366c7296b61184acd37c'] +checksums = [ + '2de18de64e7abdb1b649ad8e9d2d58b77a2b188fb5bcb6f7c2a038282081fd31', # version-4.1.tar.gz + '7a9d418f18c475fb48ddc427be7271b0fd759ad183f09a6bcafe4b76924b2a70', # OpenFOAM-4.1-cleanup.patch +] patches = ['OpenFOAM-%(version)s-cleanup.patch'] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb index c3f3f806f9..e4305fdec8 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb @@ -13,7 +13,10 @@ toolchainopts = {'cstd': 'c++11'} source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive'] sources = ['version-%(version)s.tar.gz'] -checksums = ['318a446c4ae6366c7296b61184acd37c'] +checksums = [ + '2de18de64e7abdb1b649ad8e9d2d58b77a2b188fb5bcb6f7c2a038282081fd31', # version-4.1.tar.gz + '7a9d418f18c475fb48ddc427be7271b0fd759ad183f09a6bcafe4b76924b2a70', # OpenFOAM-4.1-cleanup.patch +] patches = ['OpenFOAM-%(version)s-cleanup.patch'] diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb index c700a10e06..98a63c78c7 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -10,7 +10,11 @@ toolchainopts = {'optarch': True} source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] sources = ['%(name)s-v%(version)s.tar.gz'] -checksums = ['2e91ed242923205b060164398aa325e5fe824040732d86c74ece4f98d7a6f220'] +checksums = [ + '9f816fdc7870fb85af9a44249be05bf06f2a3f0b780275513eec9b0124fa9bda', # Trinity-v2.4.0.tar.gz + # chrysalis_commandline_noconsts_2012-10-05.patch + '3442803c357576557de843c80b73436e59e9a99027d60f5f63bb3368eceb4a5c', +] patches = [ 'chrysalis_commandline_noconsts_2012-10-05.patch', diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb index c187512784..af70dc027a 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb @@ -12,6 +12,6 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = ['https://github.com/01org/tbb/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['780baf0ad520f23b54dd20dc97bf5aae4bc562019e0a70f53bfc4c1afec6e545'] +checksums = ['3122c87a35fde759567c8579ba36a36037c6df84c3f9c4df6c9e171f866f352f'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb index 1b8ceddb15..99471b647c 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb @@ -9,7 +9,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = ['https://github.com/01org/tbb/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['1f7df7af6045179a45eba9b5dfde74d185ee7f573328f103c137696f81e4ae5a'] +checksums = ['40d5409a6fd7e214a21fd1949df422ba113fa78fde42a6aac40a2fba36e9bcdb'] builddependencies = [ ('binutils', '2.27') -- GitLab From 3c93352d59459be0d92618ef376fd51406e1313f Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 22 Sep 2017 20:33:21 +0200 Subject: [PATCH 605/845] Deleted whitespace --- easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb index 6ddfd56f5a..dc6cd8a86d 100644 --- a/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/git/git-2.14.1-GCCcore-6.4.0.eb @@ -13,7 +13,7 @@ sources = ['v%(version)s.tar.gz'] source_urls = ['https://github.com/git/git/archive'] checksums = ['ccc366d5d674fb755fd98d219c23f2b4e5da8a49d8582a6314813b280d75536b'] -builddependencies = [ +builddependencies = [ ('binutils', '2.28'), ] -- GitLab From 35580b6a1fe7b2877c61e26f356269c3062f80ac Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Mon, 25 Sep 2017 11:11:39 +0200 Subject: [PATCH 606/845] netCDF 4.4.1.1 configs for foss/2017a --- .../netCDF-4.4.1.1-foss-2017a-HDF5-1.10.1.eb | 36 +++++++++++++++++++ .../netCDF-4.4.1.1-foss-2017a-HDF5-1.8.19.eb | 36 +++++++++++++++++++ 2 files changed, 72 insertions(+) create mode 100644 easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.10.1.eb create mode 100644 easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.8.19.eb diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.10.1.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.10.1.eb new file mode 100644 index 0000000000..8e41b9784a --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.10.1.eb @@ -0,0 +1,36 @@ +name = 'netCDF' +version = '4.4.1.1' +hdf5_ver = '1.10.1' +versionsuffix = '-HDF5-%s' % hdf5_ver + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['7f040a0542ed3f6d27f3002b074e509614e18d6c515b2005d1537fec01b24909'] + +dependencies = [ + ('HDF5', hdf5_ver), + ('cURL', '7.54.0'), + ('Szip', '2.1.1'), +] + +builddependencies = [ + ('Autotools', '20150215'), + ('CMake', '3.9.1'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.8.19.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.8.19.eb new file mode 100644 index 0000000000..599e58b58f --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017a-HDF5-1.8.19.eb @@ -0,0 +1,36 @@ +name = 'netCDF' +version = '4.4.1.1' +hdf5_ver = '1.8.19' +versionsuffix = '-HDF5-%s' % hdf5_ver + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['7f040a0542ed3f6d27f3002b074e509614e18d6c515b2005d1537fec01b24909'] + +dependencies = [ + ('HDF5', hdf5_ver), + ('cURL', '7.54.0'), + ('Szip', '2.1.1'), +] + +builddependencies = [ + ('Autotools', '20150215'), + ('CMake', '3.9.1'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' -- GitLab From 89f39b0de84e7045c73189d0eabbaf3b6548dcb3 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Mon, 25 Sep 2017 11:53:13 +0200 Subject: [PATCH 607/845] hdf5 configs for 2017b toolchains --- .../h/HDF5/HDF5-1.10.1-foss-2017b.eb | 20 +++++++++++++++++++ .../h/HDF5/HDF5-1.10.1-intel-2017b.eb | 20 +++++++++++++++++++ 2 files changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb new file mode 100644 index 0000000000..c2424386eb --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb @@ -0,0 +1,20 @@ +name = 'HDF5' +version = '1.10.1' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['048a9d149fb99aaa1680a712963f5a78e9c43b588d0e79d55e06760ec377c172'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb new file mode 100644 index 0000000000..6b287febe5 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb @@ -0,0 +1,20 @@ +name = 'HDF5' +version = '1.10.1' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['048a9d149fb99aaa1680a712963f5a78e9c43b588d0e79d55e06760ec377c172'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1.1'), +] + +moduleclass = 'data' -- GitLab From 6588c18afba064b6011c479edafbd1df209a78d4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 25 Sep 2017 12:53:21 +0200 Subject: [PATCH 608/845] move up checksums in AdapterRemoval easyconfig, right below sources --- .../a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb index 9089ed3e82..6cc4080cdd 100644 --- a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb @@ -15,11 +15,10 @@ toolchainopts = {'pic': True} source_urls = ['https://github.com/MikkelSchubert/%(namelower)s/archive/'] sources = ['v%(version)s.tar.gz'] +checksums = ['20fdbdef2ecfd74af8d078f3f63e9444926dab1dd02b7dcef7c2aee77cb73b60'] files_to_copy = [(['build/%(name)s'], 'bin'), (['build/%(name)s.1'], 'share/man/man1')] -checksums = ['20fdbdef2ecfd74af8d078f3f63e9444926dab1dd02b7dcef7c2aee77cb73b60'] - dependencies = [ ('bzip2', '1.0.6'), ('zlib', '1.2.8'), -- GitLab From aa4b2f5b3057842f142e4453456cdbc4f4682218 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Mon, 25 Sep 2017 13:49:55 +0200 Subject: [PATCH 609/845] Fix comments, update to binutils 2.29, be more conservative with building deps --- .../binutils/binutils-2.29-GCCcore-system.eb | 20 +++++++++++++ .../f/flex/flex-2.6.4-GCCcore-system.eb | 28 +++++++++++++++++++ .../easyconfigs/g/GCC/GCC-system-2.29.eb | 25 +++++++++++++++++ .../easyconfigs/g/gompi/gompi-system-2.29.eb | 23 +++++++++++++++ .../help2man-1.47.4-GCCcore-system.eb | 22 +++++++++++++++ .../i/icc/icc-system-GCC-system-2.29.eb | 24 ++++++++++++++++ .../iccifort-system-GCC-system-2.29.eb | 18 ++++++++++++ .../i/ifort/ifort-system-GCC-system-2.29.eb | 24 ++++++++++++++++ .../i/iimpi/iimpi-system-GCC-system-2.29.eb | 18 ++++++++++++ ...-system-iccifort-system-GCC-system-2.29.eb | 17 +++++++++++ .../m/M4/M4-1.4.18-GCCcore-system.eb | 28 +++++++++++++++++++ .../OpenMPI/OpenMPI-system-GCC-system-2.29.eb | 17 +++++++++++ .../z/zlib/zlib-1.2.11-GCCcore-system.eb | 24 ++++++++++++++++ 13 files changed, 288 insertions(+) create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/g/gompi/gompi-system-2.29.eb create mode 100644 easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.29.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-system.eb diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-system.eb b/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-system.eb new file mode 100644 index 0000000000..2ef25643c9 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-system.eb @@ -0,0 +1,20 @@ +name = 'binutils' +version = '2.29' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': 'system'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] +checksums = ['172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4'] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb new file mode 100644 index 0000000000..a1837f33a2 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb @@ -0,0 +1,28 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GCC/GCC-system-2.29.eb b/easybuild/easyconfigs/g/GCC/GCC-system-2.29.eb new file mode 100644 index 0000000000..d9def23009 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-system-2.29.eb @@ -0,0 +1,25 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = 'system' + +binutilsver = '2.29' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/gompi/gompi-system-2.29.eb b/easybuild/easyconfigs/g/gompi/gompi-system-2.29.eb new file mode 100644 index 0000000000..0ec55da014 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-system-2.29.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = 'system' + +binutilsver = '2.29' +versionsuffix = '-%s' % binutilsver + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '%s%s' % (version, versionsuffix) + +# compiler toolchain dependencies +dependencies = [ + ('GCC', gccver), # includes both GCC system and binutils 'binutilsver' + ('OpenMPI', version, '', ('GCC', gccver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-system.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-system.eb new file mode 100644 index 0000000000..44852c2684 --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-system.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.4' + +homepage = 'https://www.gnu.org/software/help2man/' +description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} +# Can't rely on binutils in this case (since help2man is an implied dep) so switch off architecture optimisations +toolchainopts = {'optarch': False} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb new file mode 100644 index 0000000000..689910ec7a --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb @@ -0,0 +1,24 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +easyblock = 'SystemCompiler' + +name = 'icc' +version = 'system' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +generate_standalone_module = True + +gccver = 'system' +binutilsver = '2.29' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb new file mode 100644 index 0000000000..6c93bc8d83 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb @@ -0,0 +1,18 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +easyblock = "Toolchain" + +name = 'iccifort' +version = 'system' +versionsuffix = '-GCC-system-2.29' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb new file mode 100644 index 0000000000..77c3408fa1 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb @@ -0,0 +1,24 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +easyblock = 'SystemCompiler' + +name = 'ifort' +version = 'system' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +generate_standalone_module = True + +gccver = 'system' +binutilsver = '2.29' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.29.eb new file mode 100644 index 0000000000..70acaf1c9f --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.29.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = 'system' +versionsuffix = '-GCC-system-2.29' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), + ('impi', version, '', ('iccifort', '%s%s' % (version, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb new file mode 100644 index 0000000000..c9eabd1b87 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb @@ -0,0 +1,17 @@ +# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild + +easyblock = 'SystemMPI' + +name = 'impi' +version = 'system' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': 'system-GCC-system-2.29'} + +generate_standalone_module = True + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb new file mode 100644 index 0000000000..7ec4b741f1 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} +# Can't rely on binutils in this case (since this is a dep) so switch off architecture optimisations +toolchainopts = {'optarch': False} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.29.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.29.eb new file mode 100644 index 0000000000..b7226421c8 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.29.eb @@ -0,0 +1,17 @@ +easyblock = 'SystemMPI' + +name = 'OpenMPI' +# using 'system' as a version instructs the SystemMPI easyblock to derive the actual MPI version, +# and define $EBVERSION* accordingly (yet generate a module named /system); +# if an actual version is specified here, it will be checked against the version of the system MPI that was found +version = 'system' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI implementation.""" + +binutilsver = '2.29' +toolchain = {'name': 'GCC', 'version': '%s-%s' % (version, binutilsver)} + +generate_standalone_module = True + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-system.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-system.eb new file mode 100644 index 0000000000..972fae4f4d --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-system.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCCcore', 'version': 'system'} +# Can't rely on binutils in this case (since this is a dep) so switch off architecture optimisations +toolchainopts = {'optarch': False, 'pic': True} + +source_urls = ['http://zlib.net/fossils'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From e60f9d24594e5f19ac0f3e86dca7835c9ba91e71 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Mon, 25 Sep 2017 13:53:42 +0200 Subject: [PATCH 610/845] Add Bison updates --- easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb index 87b1f94e75..5b1c60e2e0 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-system.eb @@ -8,12 +8,15 @@ description = """Bison is a general-purpose parser generator that converts an an into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" toolchain = {'name': 'GCCcore', 'version': 'system'} +# Can't rely on binutils in this case (since this is a dep) so switch off architecture optimisations +toolchainopts = {'optarch': False} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] builddependencies = [ - ('M4', '1.4.17'), + ('M4', '1.4.18'), ] -- GitLab From 5e8406a7cceb0e69b173342e59cd1d46f6b22cd6 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Mon, 25 Sep 2017 14:02:04 +0200 Subject: [PATCH 611/845] Complete update to binutils 2.29 --- .../binutils/binutils-2.27-GCCcore-system.eb | 19 -------------- .../f/flex/flex-2.6.0-GCCcore-system.eb | 23 ----------------- .../easyconfigs/g/GCC/GCC-system-2.27.eb | 25 ------------------- .../easyconfigs/g/gompi/gompi-system-2.27.eb | 21 ---------------- .../i/icc/icc-system-GCC-system-2.27.eb | 24 ------------------ .../iccifort-system-GCC-system-2.27.eb | 18 ------------- .../i/ifort/ifort-system-GCC-system-2.27.eb | 24 ------------------ .../i/iimpi/iimpi-system-GCC-system-2.27.eb | 18 ------------- ...-system-iccifort-system-GCC-system-2.27.eb | 17 ------------- .../m/M4/M4-1.4.17-GCCcore-system.eb | 25 ------------------- .../OpenMPI-system-GCC-system-2.27-2.27.eb | 18 ------------- .../z/zlib/zlib-1.2.8-GCCcore-system.eb | 22 ---------------- 12 files changed, 254 deletions(-) delete mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb delete mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb delete mode 100644 easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb delete mode 100644 easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb delete mode 100644 easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb delete mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb delete mode 100644 easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb delete mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb delete mode 100644 easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb delete mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb delete mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb delete mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb b/easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb deleted file mode 100644 index 9cbdf3fdca..0000000000 --- a/easybuild/easyconfigs/b/binutils/binutils-2.27-GCCcore-system.eb +++ /dev/null @@ -1,19 +0,0 @@ -name = 'binutils' -version = '2.27' - -homepage = 'http://directory.fsf.org/project/binutils/' -description = "binutils: GNU binary utilities" - -toolchain = {'name': 'GCCcore', 'version': 'system'} - -sources = [SOURCE_TAR_GZ] -source_urls = [GNU_SOURCE] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - # zlib required, but being linked in statically, so not a runtime dep - ('zlib', '1.2.8'), -] - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb b/easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb deleted file mode 100644 index d29e621dd8..0000000000 --- a/easybuild/easyconfigs/f/flex/flex-2.6.0-GCCcore-system.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'flex' -version = '2.6.0' - -homepage = 'http://flex.sourceforge.net/' -description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, - sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" - -toolchain = {'name': 'GCCcore', 'version': 'system'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] - -checksums = [ - '5724bcffed4ebe39e9b55a9be80859ec', # flex-2.6.0.tar.gz -] - -dependencies = [('M4', '1.4.17')] -builddependencies = [ - ('Bison', '3.0.4'), -] - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb b/easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb deleted file mode 100644 index 5867f20ead..0000000000 --- a/easybuild/easyconfigs/g/GCC/GCC-system-2.27.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'Bundle' - -name = 'GCC' -version = 'system' - -binutilsver = '2.27' -versionsuffix = '-%s' % binutilsver - -homepage = 'http://gcc.gnu.org/' -description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, - as well as libraries for these languages (libstdc++, libgcj,...).""" - -toolchain = {'name': 'dummy', 'version': ''} - -dependencies = [ - ('GCCcore', version), - # binutils built on top of GCCcore - ('binutils', binutilsver, '', ('GCCcore', version)), -] - -altroot = 'GCCcore' -altversion = 'GCCcore' - -# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) -moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb b/easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb deleted file mode 100644 index 0208c2aedb..0000000000 --- a/easybuild/easyconfigs/g/gompi/gompi-system-2.27.eb +++ /dev/null @@ -1,21 +0,0 @@ -easyblock = "Toolchain" - -name = 'gompi' -version = 'system' -versionsuffix = '-2.27' # binutils version - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, - including OpenMPI for MPI support.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -gccver = '%s%s' % (version, versionsuffix) - -# compiler toolchain dependencies -dependencies = [ - ('GCC', gccver), # includes both GCC 5.4.0 and binutils 2.26 - ('OpenMPI', version, versionsuffix, ('GCC', gccver)), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb deleted file mode 100644 index 1df9a98dfa..0000000000 --- a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.27.eb +++ /dev/null @@ -1,24 +0,0 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild - -easyblock = 'SystemCompiler' - -name = 'icc' -version = 'system' - -homepage = 'http://software.intel.com/en-us/intel-compilers/' -description = "C and C++ compiler from Intel" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -generate_standalone_module = True - -gccver = 'system' -binutilsver = '2.27' -versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) - -dependencies = [ - ('GCCcore', gccver), - ('binutils', binutilsver, '', ('GCCcore', gccver)), -] - -moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb deleted file mode 100644 index 039113b0ee..0000000000 --- a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.27.eb +++ /dev/null @@ -1,18 +0,0 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild -easyblock = "Toolchain" - -name = 'iccifort' -version = 'system' -versionsuffix = '-GCC-system-2.27' - -homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('icc', version, versionsuffix), - ('ifort', version, versionsuffix), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb deleted file mode 100644 index aca6742b38..0000000000 --- a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.27.eb +++ /dev/null @@ -1,24 +0,0 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild - -easyblock = 'SystemCompiler' - -name = 'ifort' -version = 'system' - -homepage = 'http://software.intel.com/en-us/intel-compilers/' -description = "Fortran compiler from Intel" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -generate_standalone_module = True - -gccver = 'system' -binutilsver = '2.27' -versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) - -dependencies = [ - ('GCCcore', gccver), - ('binutils', binutilsver, '', ('GCCcore', gccver)), -] - -moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb deleted file mode 100644 index fc69344700..0000000000 --- a/easybuild/easyconfigs/i/iimpi/iimpi-system-GCC-system-2.27.eb +++ /dev/null @@ -1,18 +0,0 @@ -easyblock = "Toolchain" - -name = 'iimpi' -version = 'system' -versionsuffix = '-GCC-system-2.27' - -homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('icc', version, versionsuffix), - ('ifort', version, versionsuffix), - ('impi', version, '', ('iccifort', '%s%s' % (version, versionsuffix))), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb deleted file mode 100644 index e9f5cf39ca..0000000000 --- a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.27.eb +++ /dev/null @@ -1,17 +0,0 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild - -easyblock = 'SystemMPI' - -name = 'impi' -version = 'system' - -homepage = 'http://software.intel.com/en-us/intel-mpi-library/' -description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message - passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" - -toolchain = {'name': 'iccifort', 'version': 'system-GCC-system-2.27'} - -generate_standalone_module = True - -moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb deleted file mode 100644 index 7d50c98260..0000000000 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-system.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'M4' -version = '1.4.17' - -homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible - although it has some extensions (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" - -toolchain = {'name': 'GCCcore', 'version': 'system'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -# '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 -configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" - -sanity_check_paths = { - 'files': ["bin/m4"], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb deleted file mode 100644 index 46cf5ff1ef..0000000000 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-system-GCC-system-2.27-2.27.eb +++ /dev/null @@ -1,18 +0,0 @@ -easyblock = 'SystemMPI' - -name = 'OpenMPI' -# using 'system' as a version instructs the SystemMPI easyblock to derive the actual MPI version, -# and define $EBVERSION* accordingly (yet generate a module named /system); -# if an actual version is specified here, it will be checked against the version of the system MPI that was found -version = 'system' -versionsuffix = '-2.27' # binutils version - - -homepage = 'http://www.open-mpi.org/' -description = """The Open MPI Project is an open source MPI implementation.""" - -toolchain = {'name': 'GCC', 'version': '%s%s' % (version, versionsuffix)} - -generate_standalone_module = True - -moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb deleted file mode 100644 index 7f3d83179e..0000000000 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-system.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'zlib' -version = '1.2.8' - -homepage = 'http://www.zlib.net/' -description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, - not covered by any patents -- lossless data-compression library for use on virtually any - computer hardware and operating system.""" - -toolchain = {'name': 'GCCcore', 'version': 'system'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] - -sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'lib' -- GitLab From 10b8721d766c48c2db0fcd380b0f2eca8d64764e Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Mon, 25 Sep 2017 14:09:12 +0200 Subject: [PATCH 612/845] Add flex update for not using arch opts --- easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb index a1837f33a2..776be56705 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-system.eb @@ -10,7 +10,8 @@ description = """ """ toolchain = {'name': 'GCCcore', 'version': 'system'} -toolchainopts = {'pic': True} +# Can't rely on binutils in this case (since this is a dep) so switch off architecture optimisations +toolchainopts = {'optarch': False, 'pic': True} source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] sources = [SOURCELOWER_TAR_GZ] -- GitLab From 5025b75db5464f7dd8841fde53aec61e8b9d2332 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 25 Sep 2017 17:44:43 +0200 Subject: [PATCH 613/845] adding easyconfigs: DMTCP-2.5.1.eb --- easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.1.eb | 27 ++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.1.eb diff --git a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.1.eb b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.1.eb new file mode 100644 index 0000000000..f789025bd2 --- /dev/null +++ b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.1.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'DMTCP' +version = '2.5.1' + +homepage = 'http://dmtcp.sourceforge.net/' +description = """DMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or + distributed computation in user-space -- with no modifications to user code or to the O/S. It works on most Linux + applications, including Python, Matlab, R, GUI desktops, MPI, etc.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['f37d766933aee1f8fe70352faa844794047583a9eb2b44a40cbd1234d7ed6cd5'] + +builddependencies = [('Autotools', '20150215')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['bin/dmtcp_command', 'bin/dmtcp_coordinator', 'bin/dmtcp_launch', 'bin/dmtcp_restart', + 'include/dmtcp.h'], + 'dirs': ['lib/dmtcp', 'share/man/man1'], +} + +moduleclass = 'tools' -- GitLab From d36bcf1a5b870fb196689ee7c6303e3bc18a40be Mon Sep 17 00:00:00 2001 From: ocaisa Date: Tue, 26 Sep 2017 09:20:07 +0200 Subject: [PATCH 614/845] Update M4-1.4.18-GCCcore-system.eb --- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb index 7ec4b741f1..7e2ff27c82 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb @@ -9,7 +9,7 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" toolchain = {'name': 'GCCcore', 'version': 'system'} -# Can't rely on binutils in this case (since this is a dep) so switch off architecture optimisations +# Can't rely on binutils in this case (since this is an implied dep) so switch off architecture optimisations toolchainopts = {'optarch': False} sources = [SOURCELOWER_TAR_GZ] -- GitLab From b162569e80628c5673154764ae790fa23351a9fc Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Tue, 26 Sep 2017 11:06:43 +0200 Subject: [PATCH 615/845] adding easyconfigs: PhyML-3.3.20170530-goolf-1.7.20.eb --- .../PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb b/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb new file mode 100644 index 0000000000..74ab5c29be --- /dev/null +++ b/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'ConfigureMake' + +name = 'PhyML' +version = '3.3.20170530' + +homepage = 'https://github.com/stephaneguindon/phyml' +description = "Phylogenetic estimation using (Maximum) Likelihood" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['https://github.com/stephaneguindon/phyml/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['f826726cd56b755be75f923abdf29aca8a9951d6af948cddbab40739a8f99f74'] + +preconfigopts = ['sh autogen.sh && ', 'sh autogen.sh && ', 'sh autogen.sh && ', 'sh autogen.sh && '] + +configopts = ['--enable-phyml', '--enable-phytime', '--enable-phyrex', '--enable-mpi --enable-phyml'] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/phyml', 'bin/phyml-mpi', 'bin/phyrex', 'bin/phytime'], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From cd6b019769570ac81ab18bd69c31149bef6c7ed2 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Tue, 26 Sep 2017 12:18:52 +0200 Subject: [PATCH 616/845] version push to anaconda v 4.4.0 --- .../a/Anaconda2/Anaconda2-4.2.0.eb | 2 +- .../a/Anaconda2/Anaconda2-4.4.0.eb | 20 +++++++++++++++++++ .../a/Anaconda3/Anaconda3-4.2.0.eb | 2 +- .../a/Anaconda3/Anaconda3-4.4.0.eb | 19 ++++++++++++++++++ 4 files changed, 41 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.4.0.eb create mode 100644 easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb diff --git a/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.2.0.eb b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.2.0.eb index 3fe1b814e4..9db109fa47 100644 --- a/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.2.0.eb +++ b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.2.0.eb @@ -14,6 +14,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['https://repo.continuum.io/archive/'] sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] -checksums = ['a0d1fbe47014b71c6764d76fb403f217'] +checksums = ['beee286d24fb37dd6555281bba39b3deb5804baec509a9dc5c69185098cf661a'] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.4.0.eb b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.4.0.eb new file mode 100644 index 0000000000..26980fb5a7 --- /dev/null +++ b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-4.4.0.eb @@ -0,0 +1,20 @@ +# author: Jillian Rowe +# config upgrade to v4.4.0 by Joachim Hein +easyblock = 'EB_Anaconda' + +name = 'Anaconda2' +version = '4.4.0' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/archive/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] +checksums = ['2d30b91ed4d215b6b4a15162a3389e9057b15445a0c02da71bd7bd272e7b824e'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.2.0.eb b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.2.0.eb index 9d27c79985..a29b70702b 100644 --- a/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.2.0.eb +++ b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.2.0.eb @@ -14,6 +14,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['https://repo.continuum.io/archive/'] sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] -checksums = ['4692f716c82deb9fa6b59d78f9f6e85c'] +checksums = ['73b51715a12b6382dd4df3dd1905b531bd6792d4aa7273b2377a0436d45f0e78'] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb new file mode 100644 index 0000000000..3ba245b380 --- /dev/null +++ b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb @@ -0,0 +1,19 @@ +# author: Jillian Rowe +easyblock = 'EB_Anaconda' + +name = 'Anaconda3' +version = '4.4.0' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/archive/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] +checksums = ['3301b37e402f3ff3df216fe0458f1e6a4ccbb7e67b4d626eae9651de5ea3ab63'] + +moduleclass = 'lang' -- GitLab From eb227bec9e6ce5588e68c6575efb0549f1ad7d80 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Tue, 26 Sep 2017 12:32:00 +0200 Subject: [PATCH 617/845] Author clarification --- easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb index 3ba245b380..8e373b9730 100644 --- a/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb +++ b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-4.4.0.eb @@ -1,4 +1,5 @@ # author: Jillian Rowe +# config upgrade to v4.4.0 by Joachim Hein easyblock = 'EB_Anaconda' name = 'Anaconda3' -- GitLab From b1dff1cbe02067f9f8bced66a1eb15c03d0a439f Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 27 Sep 2017 15:00:06 +0200 Subject: [PATCH 618/845] Beast, version upgrade to 2.4.7, newer toolchain, sha256 checksum --- .../b/Beast/Beast-2.4.7-foss-2017a.eb | 37 +++++++++++++++++++ .../beagle-lib/beagle-lib-2.1.2-foss-2017a.eb | 33 +++++++++++++++++ 2 files changed, 70 insertions(+) create mode 100644 easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb create mode 100644 easybuild/easyconfigs/b/beagle-lib/beagle-lib-2.1.2-foss-2017a.eb diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb b/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb new file mode 100644 index 0000000000..de6855bd55 --- /dev/null +++ b/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'Beast' +version = '2.4.7' + +homepage = 'http://beast2.org/' +description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using + strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies + but is also a framework for testing evolutionary hypotheses without conditioning on a single + tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted + proportional to its posterior probability. """ + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['https://github.com/CompEvol/beast2/releases/download/v%(version)s/'] +sources = ['BEAST.v%(version)s.Linux.tgz'] +checksums = ['8dfb987b606b42d31f1bf0c311b17ca2137851095de73bcef73f3f7f0e39c1f5'] + +dependencies = [ + # this is not mandatory but beagle-lib is recommended by developers + # beagle-lib will also load the required java dependency + # if you remove this you should add the java dependency + ('beagle-lib', '2.1.2'), +] + +sanity_check_paths = { + 'files': ["bin/beast"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-2.1.2-foss-2017a.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-2.1.2-foss-2017a.eb new file mode 100644 index 0000000000..407ed73d2f --- /dev/null +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-2.1.2-foss-2017a.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'beagle-lib' +version = '2.1.2' +homepage = 'https://github.com/beagle-dev/beagle-lib' +description = """beagle-lib is a high-performance library that can perform the core calculations at the heart of most + Bayesian and Maximum Likelihood phylogenetics packages.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +# https://github.com/beagle-dev/beagle-lib/archive/beagle_release_2_1_2.tar.gz +source_urls = ['https://github.com/beagle-dev/beagle-lib/archive/'] +sources = ['beagle_release_%s.tar.gz' % version.replace('.', '_')] +checksums = ['82ff13f4e7d7bffab6352e4551dfa13afabf82bff54ea5761d1fc1e78341d7de'] + +dependencies = [('Java', '1.8.0_144', '', True)] + +builddependencies = [('Autotools', '20150215')] + +# parallel build does not work (to test) +parallel = 1 + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile + for includefile in ["beagle.h", "platform.h"]] + + ["lib/libhmsbeagle%s.so" % libfile + for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], + 'dirs': [] +} + +moduleclass = 'numlib' -- GitLab From c9a40a4a0cc91acb62c174ee80658b818f00b24c Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 27 Sep 2017 15:02:18 +0200 Subject: [PATCH 619/845] clarification on authorship --- easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb b/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb index de6855bd55..5cd48737e6 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-2.4.7-foss-2017a.eb @@ -2,6 +2,8 @@ # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +# +# Version upgrade 2.4.7, new toolchain, sha256 check: Joachim Hein easyblock = "Tarball" -- GitLab From cf9479aa4f7ce76f73f9eaa699278991428d3c76 Mon Sep 17 00:00:00 2001 From: Fokke Dijkstra Date: Wed, 27 Sep 2017 15:25:08 +0200 Subject: [PATCH 620/845] Added checksum. --- easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb b/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb index e43fd5aa94..fae8c02937 100644 --- a/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb +++ b/easybuild/easyconfigs/g/GLM/GLM-0.9.7.6-intel-2016a.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = ['https://github.com/g-truc/glm/archive/'] sources = ['%(version)s.tar.gz'] +checksums = ['872fdea580b69b752562adc60734d7472fd97d5724c4ead585564083deac3953'] builddependencies = [('CMake', '3.5.2')] -- GitLab From 1d5c5dd5e47cfa7e086a4ac9c503ee69cf65e8c2 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Wed, 27 Sep 2017 18:01:52 +0200 Subject: [PATCH 621/845] Create an exception in the test for the case where GCCcore wraps the system compiler and we need to build the dependencies of binutils --- test/easyconfigs/easyconfigs.py | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 7b45707a18..d31e9c5c95 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -252,7 +252,14 @@ def template_easyconfig_test(self, spec): # make sure binutils is included as a build dep if toolchain is GCCcore if ec['toolchain']['name'] == 'GCCcore': # with 'Tarball' easyblock: only unpacking, no building; Eigen is also just a tarball - requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] + # let's also exclude the very special case where the system GCC is used as GCCcore, and only apply this + # exception to the dependencies of binutils (since we should eventually build binutils with GCCcore) + requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] and\ + (ec['toolchain']['version'] == 'system' and + ec['name'] not in ['M4', 'Bison', 'flex', 'help2man']) + + if requires_binutils: + requires_binutils = requires_binutils not in # if no sources/extensions/components are specified, it's just a bundle (nothing is being compiled) requires_binutils &= bool(ec['sources'] or ec['exts_list'] or ec.get('components')) -- GitLab From 337bc91fde5047a4b159572586d51e9ef681d84a Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:04:15 +0200 Subject: [PATCH 622/845] Update easyconfigs.py --- test/easyconfigs/easyconfigs.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index d31e9c5c95..6551b912a0 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -257,9 +257,7 @@ def template_easyconfig_test(self, spec): requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] and\ (ec['toolchain']['version'] == 'system' and ec['name'] not in ['M4', 'Bison', 'flex', 'help2man']) - - if requires_binutils: - requires_binutils = requires_binutils not in + # if no sources/extensions/components are specified, it's just a bundle (nothing is being compiled) requires_binutils &= bool(ec['sources'] or ec['exts_list'] or ec.get('components')) -- GitLab From e59f8878d036f1dfb9c6edd14d10ea76ccb8c475 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:15:10 +0200 Subject: [PATCH 623/845] Update icc-system-GCC-system-2.29.eb --- easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb index 689910ec7a..0df920c0b7 100644 --- a/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb +++ b/easybuild/easyconfigs/i/icc/icc-system-GCC-system-2.29.eb @@ -1,5 +1,3 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild - easyblock = 'SystemCompiler' name = 'icc' -- GitLab From db7e39864acd247711d1096a60cbae7bcb79d51a Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:15:28 +0200 Subject: [PATCH 624/845] Update iccifort-system-GCC-system-2.29.eb --- .../easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb index 6c93bc8d83..f252fe7fc3 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb @@ -1,4 +1,3 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild easyblock = "Toolchain" name = 'iccifort' -- GitLab From cee1443e2a266ff48dc049a0b3948f80837e9807 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:15:44 +0200 Subject: [PATCH 625/845] Update ifort-system-GCC-system-2.29.eb --- easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb index 77c3408fa1..9ae9fe59ba 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-system-GCC-system-2.29.eb @@ -1,5 +1,3 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild - easyblock = 'SystemCompiler' name = 'ifort' -- GitLab From 99d5c47f63006cb321fdd48fd7777550d6326cfd Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:16:43 +0200 Subject: [PATCH 626/845] Update impi-system-iccifort-system-GCC-system-2.29.eb --- .../i/impi/impi-system-iccifort-system-GCC-system-2.29.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb index c9eabd1b87..b085a195f8 100644 --- a/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb +++ b/easybuild/easyconfigs/i/impi/impi-system-iccifort-system-GCC-system-2.29.eb @@ -1,5 +1,3 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild - easyblock = 'SystemMPI' name = 'impi' -- GitLab From e1606a27f891d9bef827df972a341a0bf9ddb8e3 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:19:06 +0200 Subject: [PATCH 627/845] Update M4-1.4.18-GCCcore-system.eb --- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb index 7e2ff27c82..4223b77f30 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-system.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { -- GitLab From 376b13d1cfce8f1a0b537338669ef07e7b59d2db Mon Sep 17 00:00:00 2001 From: ocaisa Date: Wed, 27 Sep 2017 18:20:21 +0200 Subject: [PATCH 628/845] Update easyconfigs.py --- test/easyconfigs/easyconfigs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 6551b912a0..735bd92427 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -247,7 +247,7 @@ def template_easyconfig_test(self, spec): 'hpcugent.github.io/easybuild', ] for old_url in old_urls: - self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' not found in %s" % (old_url, spec)) + self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' found in %s" % (old_url, spec)) # make sure binutils is included as a build dep if toolchain is GCCcore if ec['toolchain']['name'] == 'GCCcore': -- GitLab From 18a8c3f9b965bd04a168311dd412d3d7d90fa335 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 27 Sep 2017 19:27:19 +0200 Subject: [PATCH 629/845] adding easyconfigs: Blender-2.79-intel-2017a-Python-3.6.1.eb, OpenImageIO-1.7.17-intel-2017a.eb, OpenEXR-2.2.0-intel-2017a.eb --- .../Blender-2.79-intel-2017a-Python-3.6.1.eb | 57 +++++++++++++++++++ .../o/OpenEXR/OpenEXR-2.2.0-intel-2017a.eb | 33 +++++++++++ .../OpenImageIO-1.7.17-intel-2017a.eb | 33 +++++++++++ 3 files changed, 123 insertions(+) create mode 100644 easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb create mode 100644 easybuild/easyconfigs/o/OpenEXR/OpenEXR-2.2.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/o/OpenImageIO/OpenImageIO-1.7.17-intel-2017a.eb diff --git a/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000..bfbfd8acf1 --- /dev/null +++ b/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,57 @@ +easyblock = 'CMakeMake' + +name = 'Blender' +version = '2.79' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.blender.org/' +description = """Blender is the free and open source 3D creation suite. It supports + the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, + compositing and motion tracking, even video editing and game creation.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://download.blender.org/source/'] +sources = [SOURCELOWER_TAR_GZ] +patches = ['Blender-2.77a_fix-ARRAY_SIZE-icc.patch'] +checksums = [ + 'a9de03e769a2a4a0bf92186556896c4f4d32fd9ac4480915ae92d7f95b25c899', # blender-2.79.tar.gz + 'b333219ca380b08bf167bfdea33c0d23a4ed5c2cd05c5f391ca3b529fdc72a73', # Blender-2.77a_fix-ARRAY_SIZE-icc.patch +] + +# disable SSE detection to give EasyBuild full control over optimization compiler flags being used +configopts = '-DWITH_CPU_SSE=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" ' + +# these are needed until extra dependencies are added for them to work +configopts += '-DWITH_INSTALL_PORTABLE=OFF ' +configopts += '-DWITH_BUILDINFO=OFF ' +configopts += '-DWITH_GAMEENGINE=OFF ' +configopts += '-DWITH_SYSTEM_GLEW=OFF ' + +# Python paths +configopts += '-DPYTHON_VERSION=%(pyshortver)s -DPYTHON_LIBRARY=${EBROOTPYTHON}/lib/libpython%(pyshortver)sm.so ' +configopts += '-DPYTHON_INCLUDE_DIR=${EBROOTPYTHON}/include/python%(pyshortver)sm ' +configopts += '-DOPENEXR_INCLUDE_DIR=$EBROOTOPENEXR/include ' + +dependencies = [ + ('Python', '3.6.1'), + ('Boost', '1.65.1'), + ('libjpeg-turbo', '1.5.2'), + ('zlib', '1.2.11'), + ('X11', '20170314'), + ('Mesa', '17.0.2'), + ('OpenImageIO', '1.7.17'), # required for cycles render engine +] + +builddependencies = [('CMake', '3.9.1')] + +separate_build_dir = 'True' + +modextravars = {'GALLIUM_DRIVER': 'swr'} + +sanity_check_paths = { + 'files': ['bin/blender'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/o/OpenEXR/OpenEXR-2.2.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenEXR/OpenEXR-2.2.0-intel-2017a.eb new file mode 100644 index 0000000000..e3e779d742 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenEXR/OpenEXR-2.2.0-intel-2017a.eb @@ -0,0 +1,33 @@ +easyblock = 'CMakeMake' + +name = 'OpenEXR' +version = '2.2.0' + +homepage = 'http://www.openexr.com/' +description = """OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic + for use in computer imaging applications""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/openexr/openexr/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['8c219754af33fee199bdd72a0441f73dd4b3ce5363ac3c5cd7b2c6306f5442a6'] + +builddependencies = [('CMake', '3.9.1')] + +env_vars = "CPATH=%(installdir)s/include/OpenEXR:$CPATH " +env_vars += "LIBRARY_PATH=%(installdir)s/lib:$LIBRARY_PATH " +env_vars += "LD_LIBRARY_PATH=%(installdir)s/lib:$LD_LIBRARY_PATH" +preconfigopts = [ + "cd IlmBase && ", + "cd OpenEXR && " + env_vars, +] +prebuildopts = preconfigopts[:] +preinstallopts = preconfigopts[:] + +sanity_check_paths = { + 'files': ['lib/libHalf.so'], + 'dirs': ['bin', 'include/OpenEXR', 'share'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/o/OpenImageIO/OpenImageIO-1.7.17-intel-2017a.eb b/easybuild/easyconfigs/o/OpenImageIO/OpenImageIO-1.7.17-intel-2017a.eb new file mode 100644 index 0000000000..3f546fdc42 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenImageIO/OpenImageIO-1.7.17-intel-2017a.eb @@ -0,0 +1,33 @@ +easyblock = 'CMakeMake' + +name = 'OpenImageIO' +version = '1.7.17' + +homepage = 'http://openimageio.org/' +description = """OpenImageIO is a library for reading and writing images, and a bunch of related classes, utilities, + and applications.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/OpenImageIO/oiio/archive/'] +sources = ['Release-%(version)s.tar.gz'] +checksums = ['669c59d06399dd882c3e2469bb3a4b33d537db150f6fe056495c3429b5c3838f'] + +dependencies = [ + ('Boost', '1.65.1'), + ('libjpeg-turbo', '1.5.2'), + ('LibTIFF', '4.0.8'), + ('OpenEXR', '2.2.0'), +] +builddependencies = [('CMake', '3.9.1')] + +separate_build_dir = True + +configopts = '-DSTOP_ON_WARNING=OFF' + +sanity_check_paths = { + 'files': ['bin/oiiotool', 'lib/libOpenImageIO.so', 'lib/libOpenImageIO_Util.so'], + 'dirs': ['include/OpenImageIO', 'share'], +} + +moduleclass = 'lib' -- GitLab From acc8c6bd95502e75eefb7b9a9fd45197048fefa4 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Thu, 28 Sep 2017 09:51:33 +0200 Subject: [PATCH 630/845] Add missing exceptions for requiring binutils... as a build dep for easyconfigs with a `GCCcore` toolchain --- test/easyconfigs/easyconfigs.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 735bd92427..ffc0fd4102 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -253,10 +253,10 @@ def template_easyconfig_test(self, spec): if ec['toolchain']['name'] == 'GCCcore': # with 'Tarball' easyblock: only unpacking, no building; Eigen is also just a tarball # let's also exclude the very special case where the system GCC is used as GCCcore, and only apply this - # exception to the dependencies of binutils (since we should eventually build binutils with GCCcore) + # exception to the dependencies of binutils (since we should eventually build a new binutils with GCCcore) requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] and\ (ec['toolchain']['version'] == 'system' and - ec['name'] not in ['M4', 'Bison', 'flex', 'help2man']) + ec['name'] not in ['M4', 'Bison', 'flex', 'help2man', 'zlib', 'binutils']) # if no sources/extensions/components are specified, it's just a bundle (nothing is being compiled) requires_binutils &= bool(ec['sources'] or ec['exts_list'] or ec.get('components')) -- GitLab From cacd69bc3c0da2801cd5d8d52059b768c0fbaee9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 10:06:51 +0200 Subject: [PATCH 631/845] {bio}[intel/2017a] Mothur v1.39.5 --- .../g/gzip/gzip-1.8-GCCcore-6.3.0.eb | 28 ++++++++ ...Mothur-1.39.5-intel-2017a-Python-2.7.13.eb | 30 ++++++++ .../Mothur/Mothur-1.39.5_fix-hardcoding.patch | 69 +++++++++++++++++++ 3 files changed, 127 insertions(+) create mode 100644 easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..4648656b0d --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.8' + +homepage = 'http://www.gnu.org/software/gzip/' + +description = """ + gzip (GNU zip) is a popular data compression program as + a replacement for compress +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['1ff7aedb3d66a0d73f442f6261e4b3860df6fd6c94025c2cb31a202c9c60fe0e'] + +builddependencies = [('binutils', '2.27')] + +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..e7023b06bb --- /dev/null +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,30 @@ +name = 'Mothur' +version = '1.39.5' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.mothur.org/' +description = """Mothur is a single piece of open-source, expandable software + to fill the bioinformatics needs of the microbial ecology community.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'cstd': 'c++0x'} + +source_urls = ['https://github.com/mothur/mothur/archive/'] +sources = ['v%(version)s.tar.gz'] +patches = ['Mothur-%(version)s_fix-hardcoding.patch'] +checksums = [ + '9f1cd691e9631a2ab7647b19eb59cd21ea643f29b22cde73d7f343372dfee342', # v1.39.5.tar.gz + '22b4cb2616dff2cef9605e4d08d682afc62c7238cc657e01d01dd76c8e0c5722', # Mothur-1.39.5_fix-hardcoding.patch +] + +dependencies = [ + ('Python', '2.7.13'), + ('Boost', '1.65.1', versionsuffix), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('bzip2', '1.0.6'), + ('gzip', '1.8'), + ('zlib', '1.2.11'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch new file mode 100644 index 0000000000..c9430b9cfa --- /dev/null +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch @@ -0,0 +1,69 @@ +fix hardcoding + use Boost built with EasyBuild +author: Kenneth Hoste (HPC-UGent) +--- mothur-1.39.5/makefile-internal.orig 2017-09-28 09:10:57.343989078 +0200 ++++ mothur-1.39.5/makefile-internal 2017-09-28 09:11:48.795053042 +0200 +@@ -5,17 +5,17 @@ + VERSION = "\"1.39.5\"" + + # Optimize to level 3: +- CXXFLAGS += -O3 -std=c++0x +- LDFLAGS += -std=c++0x ++ #CXXFLAGS += -O3 -std=c++0x ++ #LDFLAGS += -std=c++0x + + ifeq ($(strip $(64BIT_VERSION)),yes) + #if you are a mac user use the following line + #TARGET_ARCH += -arch x86_64 + + #if you using cygwin to build Windows the following line +- CXX = x86_64-w64-mingw32-g++ +- CC = x86_64-w64-mingw32-g++ +- TARGET_ARCH += -m64 -static ++ #CXX = x86_64-w64-mingw32-g++ ++ #CC = x86_64-w64-mingw32-g++ ++ #TARGET_ARCH += -m64 -static + + #if you are a linux user use the following line - specific processor builds in future?? + #CXXFLAGS += -mtune=generic +@@ -37,8 +37,8 @@ + #The boost libraries allow you to read gz files. + ifeq ($(strip $(USEBOOST)),yes) + #statically link so the boost install is not required on users machine +- BOOST_INCLUDE_DIR="/usr/local/include" +- BOOST_LIBRARY_DIR="/usr/local/lib" ++ BOOST_INCLUDE_DIR=${EBROOTBOOST}/include ++ BOOST_LIBRARY_DIR=${EBROOTBOOST}/lib + + CXXFLAGS += -DUSE_BOOST -I ${BOOST_INCLUDE_DIR} + +--- mothur-1.39.5/Makefile.orig 2017-03-20 19:24:08.000000000 +0100 ++++ mothur-1.39.5/Makefile 2017-09-28 09:15:55.460121775 +0200 +@@ -19,9 +19,9 @@ + OPTIMIZE ?= yes + USEREADLINE ?= yes + USEBOOST ?= yes +-BOOST_LIBRARY_DIR="\"Enter_your_boost_library_path_here\"" +-BOOST_INCLUDE_DIR="\"Enter_your_boost_include_path_here\"" +-MOTHUR_FILES="\"Enter_your_default_path_here\"" ++BOOST_LIBRARY_DIR=${EBROOTBOOST}/lib ++BOOST_INCLUDE_DIR=${EBROOTBOOST}/include ++MOTHUR_FILES='' + RELEASE_DATE = "\"3/20/2017\"" + VERSION = "\"1.39.5\"" + +@@ -31,13 +31,13 @@ + + # Fastest + ifeq ($(strip $(OPTIMIZE)),yes) +- CXXFLAGS += -O3 ++ CXXFLAGS += #-O3 + endif + + CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION} -std=c++0x + LDFLAGS += -std=c++0x + +-ifeq ($(strip $(MOTHUR_FILES)),"\"Enter_your_default_path_here\"") ++ifeq ($(strip $(MOTHUR_FILES)),'') + else + CXXFLAGS += -DMOTHUR_FILES=${MOTHUR_FILES} + endif -- GitLab From 39232f591379eee825613d6e9cbc0da763291b92 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Thu, 28 Sep 2017 10:22:58 +0200 Subject: [PATCH 632/845] Create an exception in the test for the case where GCCcore wraps the system compiler and we need to build the dependencies of binutils --- test/easyconfigs/easyconfigs.py | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index ffc0fd4102..558086303e 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -247,16 +247,18 @@ def template_easyconfig_test(self, spec): 'hpcugent.github.io/easybuild', ] for old_url in old_urls: - self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' found in %s" % (old_url, spec)) + self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' not found in %s" % (old_url, spec)) # make sure binutils is included as a build dep if toolchain is GCCcore if ec['toolchain']['name'] == 'GCCcore': # with 'Tarball' easyblock: only unpacking, no building; Eigen is also just a tarball + requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] + # let's also exclude the very special case where the system GCC is used as GCCcore, and only apply this # exception to the dependencies of binutils (since we should eventually build a new binutils with GCCcore) - requires_binutils = ec['easyblock'] not in ['Tarball'] and ec['name'] not in ['Eigen'] and\ - (ec['toolchain']['version'] == 'system' and - ec['name'] not in ['M4', 'Bison', 'flex', 'help2man', 'zlib', 'binutils']) + binutils_complete_dependencies = ['M4', 'Bison', 'flex', 'help2man', 'zlib', 'binutils'] + requires_binutils &= bool(ec['toolchain']['version'] == 'system' and + ec['name'] not in binutils_complete_dependencies) # if no sources/extensions/components are specified, it's just a bundle (nothing is being compiled) requires_binutils &= bool(ec['sources'] or ec['exts_list'] or ec.get('components')) -- GitLab From ccfa84cfd12a47f9908bbec99699f602a3c3c070 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Thu, 28 Sep 2017 10:26:06 +0200 Subject: [PATCH 633/845] Create an exception in the test for the case where GCCcore wraps the system compiler and we need to build the dependencies of binutils --- .../easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb index f252fe7fc3..181806060f 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb @@ -5,7 +5,7 @@ version = 'system' versionsuffix = '-GCC-system-2.29' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" +description = ""Intel C, C++ & Fortran compilers" toolchain = {'name': 'dummy', 'version': 'dummy'} -- GitLab From 133ed30df7c14d3f7280fe48ce5e52b3a90b70ae Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Thu, 28 Sep 2017 10:54:57 +0200 Subject: [PATCH 634/845] Fix typo --- .../easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb index 181806060f..8df356d232 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-system-GCC-system-2.29.eb @@ -5,7 +5,7 @@ version = 'system' versionsuffix = '-GCC-system-2.29' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = ""Intel C, C++ & Fortran compilers" +description = "Intel C, C++ & Fortran compilers" toolchain = {'name': 'dummy', 'version': 'dummy'} -- GitLab From a628b1191b8cbcd84416fe2b6e6a03cc8f18871f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 11:14:54 +0200 Subject: [PATCH 635/845] fix remarks --- easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb | 6 +----- easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb | 6 +----- .../m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb | 2 +- .../easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch | 2 +- 4 files changed, 4 insertions(+), 12 deletions(-) diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb index 4648656b0d..fed20117eb 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.3.0.eb @@ -4,11 +4,7 @@ name = 'gzip' version = '1.8' homepage = 'http://www.gnu.org/software/gzip/' - -description = """ - gzip (GNU zip) is a popular data compression program as - a replacement for compress -""" +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" toolchain = {'name': 'GCCcore', 'version': '6.3.0'} diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb index c58749ad07..8d07f6ab4c 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb @@ -4,11 +4,7 @@ name = 'gzip' version = '1.8' homepage = 'http://www.gnu.org/software/gzip/' - -description = """ - gzip (GNU zip) is a popular data compression program as - a replacement for compress -""" +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" toolchain = {'name': 'GCCcore', 'version': '6.4.0'} diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb index e7023b06bb..07729f03aa 100644 --- a/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5-intel-2017a-Python-2.7.13.eb @@ -14,7 +14,7 @@ sources = ['v%(version)s.tar.gz'] patches = ['Mothur-%(version)s_fix-hardcoding.patch'] checksums = [ '9f1cd691e9631a2ab7647b19eb59cd21ea643f29b22cde73d7f343372dfee342', # v1.39.5.tar.gz - '22b4cb2616dff2cef9605e4d08d682afc62c7238cc657e01d01dd76c8e0c5722', # Mothur-1.39.5_fix-hardcoding.patch + '64ca39179acbcf6c3071369b4689e5bbbeb8cf0b5a0cbe10a8c6bef6c29936ba', # Mothur-1.39.5_fix-hardcoding.patch ] dependencies = [ diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch index c9430b9cfa..3892bced3e 100644 --- a/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.39.5_fix-hardcoding.patch @@ -56,7 +56,7 @@ author: Kenneth Hoste (HPC-UGent) # Fastest ifeq ($(strip $(OPTIMIZE)),yes) - CXXFLAGS += -O3 -+ CXXFLAGS += #-O3 ++ #CXXFLAGS += -O3 endif CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION} -std=c++0x -- GitLab From 10accc213311cd1507616852703011e349945e29 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 11:15:58 +0200 Subject: [PATCH 636/845] add comment regarding use of 'swr' for $GALLIUM_DRIVER --- .../b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb index bfbfd8acf1..edcd6bfe46 100644 --- a/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/b/Blender/Blender-2.79-intel-2017a-Python-3.6.1.eb @@ -47,6 +47,7 @@ builddependencies = [('CMake', '3.9.1')] separate_build_dir = 'True' +# use Intel software rasterizer by default (no GPU hardware acceleration) modextravars = {'GALLIUM_DRIVER': 'swr'} sanity_check_paths = { -- GitLab From 7d9581397a73e3ab91712cc30c48cc73f8a5efd3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 12:02:25 +0200 Subject: [PATCH 637/845] {chem}[intel/2017a] Cantera v2.3.0 --- .../3to2-1.1.1-intel-2017a-Python-2.7.13.eb | 26 +++++++++ ...Cantera-2.3.0-intel-2017a-Python-2.7.13.eb | 56 +++++++++++++++++++ .../f/fmt/fmt-3.0.2-intel-2017a.eb | 25 +++++++++ .../SCons-2.5.1-intel-2017a-Python-2.7.13.eb | 25 +++++++++ .../s/SUNDIALS/SUNDIALS-2.7.0-intel-2017a.eb | 30 ++++++++++ 5 files changed, 162 insertions(+) create mode 100644 easybuild/easyconfigs/0/3to2/3to2-1.1.1-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/f/fmt/fmt-3.0.2-intel-2017a.eb create mode 100644 easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/s/SUNDIALS/SUNDIALS-2.7.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/0/3to2/3to2-1.1.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/0/3to2/3to2-1.1.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..2ad009a7ab --- /dev/null +++ b/easybuild/easyconfigs/0/3to2/3to2-1.1.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = '3to2' +version = '1.1.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/3to2' +description = """lib3to2 is a set of fixers that are intended to backport code written for Python version 3.x + into Python version 2.x.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] +checksums = ['fef50b2b881ef743f269946e1090b77567b71bb9a9ce64b7f8e699b562ff685c'] + +dependencies = [('Python', '2.7.13')] + +options = {'modulename': 'lib3to2'} + +sanity_check_paths = { + 'files': ['bin/3to2'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..9e9f0ea6ca --- /dev/null +++ b/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,56 @@ +easyblock = 'SCons' + +name = 'Cantera' +version = '2.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/Cantera/cantera' +description = """Chemical kinetics, thermodynamics, and transport tool suite""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'strict': True} + +source_urls = ['https://github.com/Cantera/cantera/archive/'] +sources = ['v%(version)s.tar.gz'] +patches = [ + 'Cantera-%(version)s_fix-bug-416.patch', + 'Cantera-%(version)s_fix-test-reprod.patch', +] +checksums = [ + '06624f0f06bdd2acc9c0dba13443d945323ba40f68a9d422d95247c02e539b57', # v2.3.0.tar.gz + 'cbf52d6a2e24967da42edd060ae4e4958bb052967790c061680bfc157edec6c2', # Cantera-2.3.0_fix-bug-416.patch + '73b49e8fc73adf221b956980e5ef2a7808e6a81680f6e97ce846a159ae6d6966', # Cantera-2.3.0_fix-test-reprod.patch +] + +dependencies = [ + ('Python', '2.7.13'), + ('Boost', '1.63.0', versionsuffix), + ('SUNDIALS', '2.7.0'), + ('Eigen', '3.3.4', '', True), + ('fmt', '3.0.2'), + ('googletest', '1.8.0'), +] +builddependencies = [ + ('SCons', '2.5.1', versionsuffix), + ('3to2', '1.1.1', versionsuffix), +] + +common_opts = 'env_vars=all CC="$CC" CXX="$CXX" cc_flags="$CFLAGS" cxx_flags="$CXXFLAGS" ' +common_opts += 'blas_lapack_libs=mkl_rt blas_lapack_dir=$BLAS_LAPACK_LIB_DIR ' +common_opts += 'sundials_include=$EBROOTSUNDIALS/include sundials_libdir=$EBROOTSUNDIALS/lib' +buildopts = 'build ' + common_opts +# tests hang, so disable them for now +#runtest = 'test ' + common_opts +installopts = 'install ' + common_opts +prefix_arg = 'prefix=' + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +sanity_check_paths = { + 'files': ['bin/mixmaster'], + 'dirs': ['include/cantera', 'lib/pkgconfig', 'lib/python%(pyshortver)s/site-packages'], +} + +sanity_check_commands = [('python', "-c 'import cantera'")] + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/fmt/fmt-3.0.2-intel-2017a.eb b/easybuild/easyconfigs/f/fmt/fmt-3.0.2-intel-2017a.eb new file mode 100644 index 0000000000..6d6759d1fd --- /dev/null +++ b/easybuild/easyconfigs/f/fmt/fmt-3.0.2-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'CMakeMake' + +name = 'fmt' +version = '3.0.2' + +homepage = 'http://fmtlib.net/' +description = "fmt (formerly cppformat) is an open-source formatting library." + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/fmtlib/fmt/releases/download/%(version)s/'] +sources = ['fmt-%(version)s.zip'] +checksums = ['51407b62a202b29d1a9c0eb5ecd4095d30031aea65407c42c25cb10cb5c59ad4'] + +builddependencies = [('CMake', '3.9.1')] + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['lib/libfmt.a'], + 'dirs': ['include/fmt', 'lib/cmake'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..b4b5225202 --- /dev/null +++ b/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,25 @@ +easyblock = 'PythonPackage' + +name = 'SCons' +version = '2.5.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.scons.org/' +description = "SCons is a software construction tool." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c8de85fc02ed1a687b1f2ac791eaa0c1707b4382a204f17d782b5b111b9fdf07'] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': ['bin/scons', 'bin/scons-time', 'bin/sconsign'], + 'dirs': ['lib/%(namelower)s-%(version)s/%(name)s'], +} + +options = {'modulename': False} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SUNDIALS/SUNDIALS-2.7.0-intel-2017a.eb b/easybuild/easyconfigs/s/SUNDIALS/SUNDIALS-2.7.0-intel-2017a.eb new file mode 100644 index 0000000000..cd70179fef --- /dev/null +++ b/easybuild/easyconfigs/s/SUNDIALS/SUNDIALS-2.7.0-intel-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'CMakeMake' + +name = 'SUNDIALS' +version = '2.7.0' + +homepage = 'http://computation.llnl.gov/projects/sundials' +description = "SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = ['http://computation.llnl.gov/projects/sundials/download/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d39fcac7175d701398e4eb209f7e92a5b30a78358d4a0c0fcc23db23c11ba104'] + +builddependencies = [('CMake', '3.9.1')] + +separate_build_dir = True + +configopts = "-DMPI_ENABLE=ON -DOPENMP_ENABLE=ON -DLAPACK_ENABLE=ON" + +solvers = ['arkode', 'cvode', 'cvodes', 'ida', 'idas', 'kinsol'] +sanity_check_paths = { + 'files': ['lib/libsundials_%s.a' % s for s in solvers + ['nvecopenmp', 'nvecparallel', 'nvecserial']] + + ['lib/libsundials_%s.%s' % (s, SHLIB_EXT) for s in solvers + ['nvecopenmp', 'nvecparallel', 'nvecserial']], + 'dirs': ['examples/%s' % s for s in solvers] + ['include/%s' % s for s in solvers] + + ['examples/nvector', 'include/nvector', 'include/sundials'], +} + +moduleclass = 'math' -- GitLab From 0fba516588f2df296f60d1fcff8997c520895b7d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 12:17:34 +0200 Subject: [PATCH 638/845] fix checksums in SCons easyconfig --- .../s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb index b4b5225202..5994a109ab 100644 --- a/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a-Python-2.7.13.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['c8de85fc02ed1a687b1f2ac791eaa0c1707b4382a204f17d782b5b111b9fdf07'] +checksums = ['0b25218ae7b46a967db42f2a53721645b3d42874a65f9552ad16ce26d30f51f2'] dependencies = [('Python', '2.7.13')] -- GitLab From 4e975f2567fd2faaf44e4a084fb772b1782070e4 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Wed, 27 Sep 2017 15:19:09 +0200 Subject: [PATCH 639/845] cuDNN 7.0.2 for CUDA 9.0.176 --- .../c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb new file mode 100644 index 0000000000..4cbb1da6c8 --- /dev/null +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Author: Stephane Thiell +## +easyblock = 'Tarball' + +name = 'cuDNN' +version = '7.0.2' +cuda_version = '9.0.176' + +cuda_version_major_minor = '.'.join(cuda_version.split('.')[:2]) + +versionsuffix = '-CUDA-%s' % cuda_version + +homepage = 'https://developer.nvidia.com/cudnn' +description = """The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for + deep neural networks.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# Nvidia developer registration required. +# Download link: https://developer.nvidia.com/rdp/cudnn-download +sources = ['%%(namelower)s-%s-linux-x64-v%%(version)s.tgz' % cuda_version_major_minor] +checksums = ['ec2a89453ef6454d417b7f3dad67405e30953e1df1e47aafb846f99d02eaa5d1'] + +dependencies = [('CUDA', cuda_version)] + +sanity_check_paths = { + 'files': ['include/cudnn.h', 'lib64/libcudnn_static.a'], + 'dirs': ['include', 'lib64'], +} + +moduleclass = 'numlib' -- GitLab From 2302c34865b08a8d5e9f95d926ecd31465a4a0a1 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Wed, 27 Sep 2017 14:20:40 +0200 Subject: [PATCH 640/845] {system}[dummy] CUDA 9.0.176 --- easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb b/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb new file mode 100644 index 0000000000..9fa8c62dd8 --- /dev/null +++ b/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb @@ -0,0 +1,18 @@ +name = 'CUDA' +version = '9.0.176' + +homepage = 'https://developer.nvidia.com/cuda-toolkit' +description = """CUDA (formerly Compute Unified Device Architecture) is a parallel + computing platform and programming model created by NVIDIA and implemented by the + graphics processing units (GPUs) that they produce. CUDA gives developers access + to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/'] +sources = ['cuda_%(version)s_384.81_linux-run'] +checksums = ['96863423feaa50b5c1c5e1b9ec537ef7ba77576a3986652351ae43e66bcd080c'] + +modextravars = {'CUDA_HOME': '%(installdir)s'} + +moduleclass = 'system' -- GitLab From 4da77ac20f82c650ca060f782e0052e178d57a86 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 12:51:04 +0200 Subject: [PATCH 641/845] {tools}[dummy/] ccache v3.3.4 --- .../easyconfigs/c/ccache/ccache-3.3.4-f90.eb | 42 +++ .../c/ccache/ccache-3.3.4_f90.patch | 257 ++++++++++++++++++ 2 files changed, 299 insertions(+) create mode 100644 easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb create mode 100644 easybuild/easyconfigs/c/ccache/ccache-3.3.4_f90.patch diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb b/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb new file mode 100644 index 0000000000..ade35d4cab --- /dev/null +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## +easyblock = 'ConfigureMake' + +name = 'ccache' +version = '3.3.4' +versionsuffix = '-f90' + +homepage = 'http://ccache.samba.org/' +description = """ccache-3.1.9: Cache for C/C++ compilers""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {'static': True} + +source_urls = ['https://github.com/ccache/ccache/archive/'] +sources = ['v%(version)s.tar.gz'] +patches = ['ccache-%(version)s_f90.patch'] +checksums = [ + 'e7d789e3c0990aa12e17bb25fef1b7ef749e361d0dfb9205a5b7df15bdf0a3f7', # v3.3.4.tar.gz + 'c8ba2f0574c85c58b7ea4d8105e5fae5a152ec87b974c2938733d2fa425e6d33', # ccache-3.3.4_f90.patch +] + +builddependencies = [ + ('Autotools', '20150215'), + ('zlib', '1.2.11'), +] + +preconfigopts = "./autogen.sh && " +buildopts = 'LDFLAGS="-static"' + +sanity_check_paths = { + 'files': ['bin/ccache'], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.4_f90.patch b/easybuild/easyconfigs/c/ccache/ccache-3.3.4_f90.patch new file mode 100644 index 0000000000..4c5775fb70 --- /dev/null +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.4_f90.patch @@ -0,0 +1,257 @@ +port unmerged support for Fortran90 to ccache 3.3.4 +see also https://github.com/ccache/ccache/pull/90 +diff -ru ccache-3.3.4.orig/compopt.c ccache-3.3.4/compopt.c +--- ccache-3.3.4.orig/compopt.c 2017-02-17 22:26:01.000000000 +0100 ++++ ccache-3.3.4/compopt.c 2017-09-08 22:37:37.887344362 +0200 +@@ -40,6 +40,7 @@ + {"-F", AFFECTS_CPP | TAKES_ARG | TAKES_CONCAT_ARG | TAKES_PATH}, + {"-G", TAKES_ARG}, + {"-I", AFFECTS_CPP | TAKES_ARG | TAKES_CONCAT_ARG | TAKES_PATH}, ++ {"-J", TAKES_ARG | TAKES_PATH}, + {"-L", TAKES_ARG}, + {"-M", TOO_HARD}, + {"-MF", TAKES_ARG}, +Only in ccache-3.3.4: compopt.c.orig +diff -ru ccache-3.3.4.orig/language.c ccache-3.3.4/language.c +--- ccache-3.3.4.orig/language.c 2017-02-17 22:26:01.000000000 +0100 ++++ ccache-3.3.4/language.c 2017-09-08 22:40:39.688431455 +0200 +@@ -73,19 +73,17 @@ + {".FPP", "f77-cpp-input"}, + {".FTN", "f77-cpp-input"}, + // Free form Fortran without preprocessing: +-#if 0 // Could generate modules, ignore for now! ++ // Could generate modules, ignore for now! + {".f90", "f95"}, + {".f95", "f95"}, + {".f03", "f95"}, + {".f08", "f95"}, +-#endif + // Free form Fortran with traditional preprocessing: +-#if 0 // Could generate modules, ignore for now! ++ // Could generate modules, ignore for now! + {".F90", "f95-cpp-input"}, + {".F95", "f95-cpp-input"}, + {".F03", "f95-cpp-input"}, + {".F08", "f95-cpp-input"}, +-#endif + {NULL, NULL} + }; + +@@ -113,10 +111,8 @@ + {"assembler", "assembler"}, + {"f77-cpp-input", "f77"}, + {"f77", "f77"}, +-#if 0 // Could generate module files, ignore for now! + {"f95-cpp-input", "f95"}, + {"f95", "f95"}, +-#endif + {NULL, NULL} + }; + +diff -ru ccache-3.3.4.orig/ccache.c ccache-3.3.4/ccache.c +--- ccache-3.3.4.orig/ccache.c 2017-02-17 22:26:01.000000000 +0100 ++++ ccache-3.3.4/ccache.c 2017-09-08 22:45:31.380156530 +0200 +@@ -188,6 +188,9 @@ + + // The name of the cpp stderr file. + static char *cpp_stderr; ++ ++/* the name of the custom fortran module directory (default: pwd dirname) */ ++static char *fortran_module_dir = NULL; + + // Full path to the statistics file in the subdirectory where the cached result + // belongs (//stats). +@@ -1106,6 +1109,12 @@ + // tmp.stdout.vexed.732.o: /home/mbp/.ccache/tmp.stdout.vexed.732.i + x_unsetenv("DEPENDENCIES_OUTPUT"); + ++ /* for Fortran explicitly specify target module directory */ ++ if (fortran_module_dir) { ++ args_add(args, "-J"); ++ args_add(args, fortran_module_dir); ++ } ++ + if (conf->run_second_cpp) { + args_add(args, input_file); + } else { +@@ -1116,6 +1125,9 @@ + int status = + execute(args->argv, tmp_stdout_fd, tmp_stderr_fd, &compiler_pid); + args_pop(args, 3); ++ if (fortran_module_dir) { ++ args_pop(args, 2); ++ } + + struct stat st; + if (x_stat(tmp_stdout, &st) != 0) { +@@ -1665,7 +1677,9 @@ + i++; + continue; + } +- if (compopt_short(compopt_affects_cpp, args->argv[i])) { ++ if (str_startswith(args->argv[i], "-J")) { ++ /* ignore it here - handled later */ ++ } else if (compopt_short(compopt_affects_cpp, args->argv[i])) { + continue; + } + } +@@ -1856,12 +1870,19 @@ + // Try to return the compile result from cache. If we can return from cache + // then this function exits with the correct status code, otherwise it returns. + static void +-from_cache(enum fromcache_call_mode mode, bool put_object_in_manifest) ++from_cache(enum fromcache_call_mode mode, bool put_object_in_manifest, struct args* args) + { ++ char *tmp_stdout, *tmp_stderr; ++ int tmp_stdout_fd, tmp_stderr_fd, status; + // The user might be disabling cache hits. + if (conf->recache) { + return; + } ++ ++ /* Fortran 90/95 code might depend on module files, so allow only direct mode then */ ++ if (fortran_module_dir && mode != FROMCACHE_DIRECT_MODE ) { ++ return; ++ } + + struct stat st; + if (stat(cached_obj, &st) != 0) { +@@ -1957,6 +1978,45 @@ + if (put_object_in_manifest) { + update_manifest_file(); + } ++ ++ /* Fortran regenerate possible module files */ ++ if (fortran_module_dir) { ++ tmp_stdout = format("%s.tmp.stdout", cached_obj); ++ tmp_stdout_fd = create_tmp_fd(&tmp_stdout); ++ tmp_stderr = format("%s.tmp.stderr", cached_obj); ++ tmp_stderr_fd = create_tmp_fd(&tmp_stderr); ++ ++ args_add(args, "-J"); ++ args_add(args, fortran_module_dir); ++ args_add(args, "-fsyntax-only"); ++ args_add(args, input_file); ++ ++ cc_log("Running compiler to generate Fortran modules"); ++ status = execute(args->argv, tmp_stdout_fd, tmp_stderr_fd, &compiler_pid); ++ args_pop(args, 4); ++ ++ if (status != 0) { ++ int fd; ++ cc_log("Compiler gave exit status %d", status); ++ stats_update(STATS_STATUS); ++ ++ fd = open(tmp_stderr, O_RDONLY | O_BINARY); ++ if (fd != -1) { ++ /* We can output stderr immediately instead of rerunning the compiler. */ ++ copy_fd(fd, 2); ++ close(fd); ++ tmp_unlink(tmp_stderr); ++ tmp_unlink(tmp_stdout); ++ ++ x_exit(status); ++ } ++ tmp_unlink(tmp_stderr); ++ tmp_unlink(tmp_stdout); ++ ++ failed(); ++ } ++ } ++ + + // Log the cache hit. + switch (mode) { +@@ -2302,6 +2362,25 @@ + continue; + } + ++ /* we need to work out where Fortran module files are meant to go */ ++ if (str_eq(argv[i], "-J")) { ++ if (i == argc-1) { ++ cc_log("Missing argument to %s", argv[i]); ++ stats_update(STATS_ARGS); ++ result = false; ++ goto out; ++ } ++ fortran_module_dir = make_relative_path(x_strdup(argv[i+1])); ++ i++; ++ continue; ++ } ++ ++ /* alternate form of -J, with no space */ ++ if (str_startswith(argv[i], "-J")) { ++ fortran_module_dir = make_relative_path(x_strdup(&argv[i][2])); ++ continue; ++ } ++ + if (str_eq(argv[i], "-gsplit-dwarf")) { + cc_log("Enabling caching of dwarf files since -gsplit-dwarf is used"); + using_split_dwarf = true; +@@ -2610,7 +2689,9 @@ + } + + char *relpath = make_relative_path(x_strdup(argv[i+1])); +- if (compopt_affects_cpp(argv[i])) { ++ if (str_startswith(argv[i], "-J")) { ++ /* ignore it here - handled later */ ++ } else if (compopt_affects_cpp(argv[i])) { + args_add(cpp_args, argv[i]); + args_add(cpp_args, relpath); + } else { +@@ -2968,6 +3049,19 @@ + *preprocessor_args = args_copy(stripped_args); + args_extend(*preprocessor_args, cpp_args); + ++ /* special handling for Fortran */ ++ if (str_startswith(actual_language, "f95")) { ++ /* do not do explicit preprocessing in Fortran 90/95 */ ++ args_extend(*compiler_args, cpp_args); ++ ++ /* Fortran may produce module files. Output directory was specified by -J */ ++ if (!fortran_module_dir) { ++ /* defaults to current working directory */ ++ fortran_module_dir = make_relative_path(x_strdup(current_working_dir)); ++ } ++ } else { ++ free(fortran_module_dir); fortran_module_dir = NULL; ++ } + out: + args_free(expanded_args); + args_free(stripped_args); +@@ -3129,6 +3223,7 @@ + i_tmpfile = NULL; + direct_i_file = false; + free(cpp_stderr); cpp_stderr = NULL; ++ free(fortran_module_dir); fortran_module_dir = NULL; + free(stats_file); stats_file = NULL; + output_is_precompiled_header = false; + +@@ -3219,6 +3314,9 @@ + if (output_dia) { + cc_log("Diagnostic file: %s", output_dia); + } ++ if (fortran_module_dir) { ++ cc_log("Fortran 90/95 or newer detected, putting module files into: %s", fortran_module_dir); ++ } + + if (using_split_dwarf) { + if (!generating_dependencies) { +@@ -3250,7 +3348,7 @@ + update_cached_result_globals(object_hash); + + // If we can return from cache at this point then do so. +- from_cache(FROMCACHE_DIRECT_MODE, 0); ++ from_cache(FROMCACHE_DIRECT_MODE, 0, compiler_args); + + // Wasn't able to return from cache at this point. However, the object + // was already found in manifest, so don't readd it later. +@@ -3299,7 +3397,7 @@ + } + + // If we can return from cache at this point then do. +- from_cache(FROMCACHE_CPP_MODE, put_object_in_manifest); ++ from_cache(FROMCACHE_CPP_MODE, put_object_in_manifest, compiler_args); + + if (conf->read_only) { + cc_log("Read-only mode; running real compiler"); -- GitLab From e6b171bc98d19277b3289ce96766d49fc76296c8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 12:54:22 +0200 Subject: [PATCH 642/845] fix minor style issue --- .../c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb index 9e9f0ea6ca..98bd61fbc0 100644 --- a/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb @@ -40,7 +40,7 @@ common_opts += 'blas_lapack_libs=mkl_rt blas_lapack_dir=$BLAS_LAPACK_LIB_DIR ' common_opts += 'sundials_include=$EBROOTSUNDIALS/include sundials_libdir=$EBROOTSUNDIALS/lib' buildopts = 'build ' + common_opts # tests hang, so disable them for now -#runtest = 'test ' + common_opts +# runtest = 'test ' + common_opts installopts = 'install ' + common_opts prefix_arg = 'prefix=' -- GitLab From 60937c9d884c0c52c9f83826f06d9ef8b3999c68 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 13:20:18 +0200 Subject: [PATCH 643/845] fix/improve description in HDF5 easyconfigs --- .../easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb | 5 +++-- .../h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb | 5 +++-- .../h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb | 5 +++-- .../h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb | 5 +++-- .../easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb | 5 +++-- easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb | 5 +++-- 81 files changed, 243 insertions(+), 162 deletions(-) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb index 78f22f07df..955edbfcf7 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.0-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb index 826740a3fc..d2beb3b023 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.0-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolfc', 'version': '2016.10'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb index 73282dd565..23849361c9 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.0-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb index 9319a2c2b1..4800daeb09 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.0-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017.01'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb index 2861eb199d..8bbcf3ba54 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.0-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb index 3602950bf6..844ed762a8 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb index c2424386eb..49b13885f2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2017b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb index 5dce1430bd..93a6c88691 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb index 6b287febe5..c8b8a40238 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.10.1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb index 1e95612a1b..36af20596a 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'GCC', 'version': '4.8.1'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb index 1f3a15a705..01d3a9faeb 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.10' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb index 9f3153cef8..d41942a2f1 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = "-gpfs" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management - of extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb index 314870506e..436068f430 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = "-gpfs" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management - of extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb index 54393d6cef..62c6b3edef 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb index 75fb24dc93..dd538c411b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.10' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb index 2aaf800fdb..efee2ed453 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = "-gpfs" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management - of extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb index 664ac4915d..5c7fdcdf4e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = "-gpfs" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management - of extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb index 4f6fffd29a..6c9e67db39 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = "-gpfs" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management - of extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '6.1.5'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb index 55ac49288a..1fb3aecd33 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb @@ -3,8 +3,9 @@ version = '1.8.10' versionsuffix = "-gpfs" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management - of extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb index ed6d0e1c4e..d7172ea58e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.10-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb index da6a6ac07e..c777fec29e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.10-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb index df1a74ad9a..a74d0903c4 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.10-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb index 69b3336df0..06450e11ec 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb @@ -3,8 +3,9 @@ version = '1.8.11' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'GCC', 'version': '4.8.1'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb index baa65b4571..f6704c170b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.11' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb index 7095cb38b8..4133cdbdf8 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb @@ -3,8 +3,9 @@ version = '1.8.11' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb index d0013da7bf..6c7c542fe8 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb @@ -3,8 +3,9 @@ version = '1.8.12' versionsuffix = '-zlib-1.2.7' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb index 777fc010e6..75aa5da35f 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.12' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb index ba8d085626..c86e56985d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb @@ -3,8 +3,9 @@ version = '1.8.12' versionsuffix = '-zlib-1.2.8' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb index fd08cc083e..8f6f748af2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.12' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb index e8c2b7e7ab..7f7cd85352 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.12' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb index c5622dfd07..5216f2b3fa 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.13' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb index b6151ce7c1..b7dd3900c2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.13' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb index 440bfaf4da..021e189806 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.13' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb index 1c2e0ae55d..ebc4ebd91d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.13' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb index 17df3cb04f..e65c8600e3 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.13' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb index d1a99fe666..4dc3145dd8 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = "1.8.14" homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb index 0fb424c799..e5bad53fb1 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb @@ -3,8 +3,9 @@ version = '1.8.14' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb index b97088f0e3..8429ba61ce 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.14' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb index 5414c97fd0..6b9a4b3d2e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb @@ -3,8 +3,9 @@ version = '1.8.14' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb index f04a2bfbbc..c87a73a621 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.14' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb index cc345601a7..55d9d007db 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb index 0bfd6778dc..35bf4a52af 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb index e7b7b4e75d..15a8734ca2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb index 9514ef2c7b..4081f97691 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb index dde5f4481e..88a5b0c9fc 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb index 1c3be3c832..637d363370 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb index bcba39eb8f..b01a0c7f17 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.15-patch1' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb index bdd56e87c1..26e9ae99e7 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb index 1f315f8f38..2376ecf9be 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb @@ -3,8 +3,9 @@ version = '1.8.16' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb index d7f79bf614..f21664f491 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb index ac5b554944..ec481c9e1b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb @@ -3,8 +3,9 @@ version = '1.8.16' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'gimkl', 'version': '2.11.5'} toolchainopts = {'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb index d28779cc9c..1dde56e3fc 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb @@ -3,8 +3,9 @@ version = '1.8.16' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb index 70e4ec54b7..677aee902a 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb index 11f989ce67..a9a8419113 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb index 930a707634..dd31e3a3de 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb @@ -3,8 +3,9 @@ version = '1.8.16' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb index 22d10bc205..a76a5ebf26 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb index 490c43aea3..ca143920be 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'iomkl', 'version': '2016.07'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb index 9ace13e3df..546d01e870 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.16' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb index 9ed0a9b12d..0eb787ee2b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb @@ -3,8 +3,9 @@ version = '1.8.17' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb index 2a7c9054f4..c66c77e4f6 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.17' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb index 365f098c88..db79753e71 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.17' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb index 2dff146ecc..cbad936718 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.17' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb index e3b8e084ae..73a2244699 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb @@ -3,8 +3,9 @@ version = '1.8.17' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb index b513c5e0c7..f8ce3b8abc 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.17' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb index a6292e12c4..49a206cc06 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.18' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb index fdf33772a9..515ece98e1 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.18' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb index 11630b75f7..4724acd620 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.18' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'gimkl', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb index cf96723fc7..0c947c1e86 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.18' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb index 5619f021d4..55381bd4ea 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.18' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017.01'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb index c33a218cc9..ddf7a7fd7d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb @@ -3,8 +3,9 @@ version = '1.8.18' versionsuffix = '-serial' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': False} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb index 861500bc3a..6b5342588c 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.18' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb index 9901d7d4d0..6438c223b3 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-foss-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.19' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb index dd4bf512ac..26fe453133 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.19' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb index 3b0999608a..cdca5f26fe 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.7' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb index efc7ae1f6e..4c92f4c90d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.7' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb index ddc5289cb5..2556002909 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.9' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb index e77a9b41a1..db4715b7ec 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.9' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'goolf', 'version': '1.5.16'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb index 24dd608c18..fc2ac104c2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.9' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of -extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.2.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb index 202a1ff1e5..638fcd522e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.9' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb index 51723ed590..cbba2c691d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.9' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb index e3dd542387..99b9298894 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb @@ -2,8 +2,9 @@ name = 'HDF5' version = '1.8.9' homepage = 'https://support.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" +description = """HDF5 is a data model, library, and file format for storing and managing data. + It supports an unlimited variety of datatypes, and is designed for flexible + and efficient I/O and for high volume and complex data.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -- GitLab From b9730b06c5d2b17f8625fbd7f70f36fb3939ab01 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 13:31:57 +0200 Subject: [PATCH 644/845] Eigen is just a build dep --- .../c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb index 98bd61fbc0..693b5ff757 100644 --- a/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/c/Cantera/Cantera-2.3.0-intel-2017a-Python-2.7.13.eb @@ -26,13 +26,13 @@ dependencies = [ ('Python', '2.7.13'), ('Boost', '1.63.0', versionsuffix), ('SUNDIALS', '2.7.0'), - ('Eigen', '3.3.4', '', True), ('fmt', '3.0.2'), ('googletest', '1.8.0'), ] builddependencies = [ ('SCons', '2.5.1', versionsuffix), ('3to2', '1.1.1', versionsuffix), + ('Eigen', '3.3.4', '', True), ] common_opts = 'env_vars=all CC="$CC" CXX="$CXX" cc_flags="$CFLAGS" cxx_flags="$CXXFLAGS" ' -- GitLab From 05d797313460220760254fa0499763889e4a2071 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 28 Sep 2017 13:55:03 +0200 Subject: [PATCH 645/845] remove modextravars --- easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb b/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb index 9fa8c62dd8..6c225807bc 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb @@ -1,3 +1,5 @@ +easyblock = 'EB_CUDA' + name = 'CUDA' version = '9.0.176' @@ -13,6 +15,4 @@ source_urls = ['https://developer.nvidia.com/compute/cuda/%(version_major_minor) sources = ['cuda_%(version)s_384.81_linux-run'] checksums = ['96863423feaa50b5c1c5e1b9ec537ef7ba77576a3986652351ae43e66bcd080c'] -modextravars = {'CUDA_HOME': '%(installdir)s'} - moduleclass = 'system' -- GitLab From 0d47c32b6d9b3535894d46ebe66f41e157ddb120 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 Sep 2017 14:19:31 +0200 Subject: [PATCH 646/845] fix descr for ccache --- easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb b/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb index ade35d4cab..609100b0d3 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.4-f90.eb @@ -13,7 +13,7 @@ version = '3.3.4' versionsuffix = '-f90' homepage = 'http://ccache.samba.org/' -description = """ccache-3.1.9: Cache for C/C++ compilers""" +description = "Cache for C/C++ compilers" toolchain = {'name': 'dummy', 'version': ''} toolchainopts = {'static': True} -- GitLab From 537e08c3c4221343d4cdc652cfe861cce9f301f9 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 28 Sep 2017 14:20:16 +0200 Subject: [PATCH 647/845] remove easyblock --- easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb b/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb index 6c225807bc..921a1d653a 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-9.0.176.eb @@ -1,5 +1,3 @@ -easyblock = 'EB_CUDA' - name = 'CUDA' version = '9.0.176' -- GitLab From 94a68d56b3914de7dc39ef8b9101ec2f616d7ef9 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 28 Sep 2017 14:39:53 +0200 Subject: [PATCH 648/845] use original tarball name --- easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb index 4cbb1da6c8..e17256dd8c 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} # Nvidia developer registration required. # Download link: https://developer.nvidia.com/rdp/cudnn-download -sources = ['%%(namelower)s-%s-linux-x64-v%%(version)s.tgz' % cuda_version_major_minor] +sources = ['%%(namelower)s-%s-linux-x64-v%%(version_major)s.tgz' % cuda_version_major_minor] checksums = ['ec2a89453ef6454d417b7f3dad67405e30953e1df1e47aafb846f99d02eaa5d1'] dependencies = [('CUDA', cuda_version)] -- GitLab From 4b2be82eaad0834bc2b0d11be56cb96f9d9bdb9b Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 28 Sep 2017 15:05:09 +0200 Subject: [PATCH 649/845] rename the downloaded tarball to include full version --- easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb index e17256dd8c..66633af0e4 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb @@ -21,7 +21,10 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} # Nvidia developer registration required. # Download link: https://developer.nvidia.com/rdp/cudnn-download -sources = ['%%(namelower)s-%s-linux-x64-v%%(version_major)s.tgz' % cuda_version_major_minor] +sources = [{ + 'filename': '%%(namelower)s-%s-linux-x64-v%%(version)s.tgz' % cuda_version_major_minor, + 'download_filename': '%%(namelower)s-%s-linux-x64-v%%(version_major)s.tgz' % cuda_version_major_minor, +}] checksums = ['ec2a89453ef6454d417b7f3dad67405e30953e1df1e47aafb846f99d02eaa5d1'] dependencies = [('CUDA', cuda_version)] -- GitLab From ff916e816683a4e67f3ec8e419796d738412f7d4 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Thu, 28 Sep 2017 15:55:18 +0200 Subject: [PATCH 650/845] require manual rename of the source --- easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb index 66633af0e4..47cab328d3 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-7.0.2-CUDA-9.0.176.eb @@ -21,10 +21,8 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} # Nvidia developer registration required. # Download link: https://developer.nvidia.com/rdp/cudnn-download -sources = [{ - 'filename': '%%(namelower)s-%s-linux-x64-v%%(version)s.tgz' % cuda_version_major_minor, - 'download_filename': '%%(namelower)s-%s-linux-x64-v%%(version_major)s.tgz' % cuda_version_major_minor, -}] +# Download as cudnn-9.0-linux-x64-v7.tgz, rename to cudnn-9.0-linux-x64-v7.0.2.tgz +sources = ['%%(namelower)s-%s-linux-x64-v%%(version)s.tgz' % cuda_version_major_minor] checksums = ['ec2a89453ef6454d417b7f3dad67405e30953e1df1e47aafb846f99d02eaa5d1'] dependencies = [('CUDA', cuda_version)] -- GitLab From 047e60620b796774307fdcd006c511b4f4c8eb82 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 28 Sep 2017 17:43:00 +0200 Subject: [PATCH 651/845] updated preconfigopts --- .../easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb b/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb index 74ab5c29be..3a76caba75 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-3.3.20170530-goolf-1.7.20.eb @@ -17,7 +17,7 @@ source_urls = ['https://github.com/stephaneguindon/phyml/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['f826726cd56b755be75f923abdf29aca8a9951d6af948cddbab40739a8f99f74'] -preconfigopts = ['sh autogen.sh && ', 'sh autogen.sh && ', 'sh autogen.sh && ', 'sh autogen.sh && '] +preconfigopts = 'sh autogen.sh && ' configopts = ['--enable-phyml', '--enable-phytime', '--enable-phyrex', '--enable-mpi --enable-phyml'] -- GitLab From 3f103a3c55195d7cae87e18f9369a244fcffc519 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 29 Sep 2017 11:16:57 +0200 Subject: [PATCH 652/845] adding easyconfigs: ncdf4-1.16-intel-2017a-R-3.4.0.eb --- .../n/ncdf4/ncdf4-1.16-intel-2017a-R-3.4.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncdf4/ncdf4-1.16-intel-2017a-R-3.4.0.eb diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.16-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.16-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000..9b976ba29d --- /dev/null +++ b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.16-intel-2017a-R-3.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'RPackage' + +name = 'ncdf4' +version = '1.16' +versionsuffix = '-R-%(rver)s' + +homepage = 'http://cran.r-project.org/web/packages/%(name)s' +description = """ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/$(name)s/', +] +sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['edd5731a805bbece3a8f6132c87c356deafc272351e1dd07256ca00574949253'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('netCDF', '4.4.1.1'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['ncdf4'], +} + +moduleclass = 'math' -- GitLab From a0cfbd59ab22b35d742d589ab01ae03e2b986af4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 29 Sep 2017 11:54:01 +0200 Subject: [PATCH 653/845] include heatmap3 extension for R 3.4.0 --- easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index afab06e97b..c3718403dc 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -555,6 +555,7 @@ exts_list = [ ('mpath', '0.2-4', ext_options), ('timereg', '1.9.1', ext_options), ('peperr', '1.1-7', ext_options), + ('heatmap3', '1.1.1', ext_options), ] moduleclass = 'lang' -- GitLab From f63edca561f0277e561e382980d21814b92a4fa5 Mon Sep 17 00:00:00 2001 From: Jordi Blasco Date: Mon, 2 Oct 2017 22:47:23 +1300 Subject: [PATCH 654/845] {perf}[foss/2017a] supermagic version 20170824 --- .../supermagic-20170824-foss-2017a.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb diff --git a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb new file mode 100644 index 0000000000..c5f90ae5c4 --- /dev/null +++ b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb @@ -0,0 +1,32 @@ +## +# This is a contribution from HPCNow! (http://hpcnow.com) +# Copyright:: HPCNow! +# Authors:: Jordi Blasco +# License:: GPL-v3.0 +## + +easyblock = 'ConfigureMake' + +name = 'supermagic' +version = '20170824' + +homepage = 'https://github.com/hpc/supermagic' +description = """Very simple MPI sanity code. Nothing more, nothing less.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'usempi': True} + +git_commit_id = '07311ad853' +sources = ['%s.tar.gz' % git_commit_id] +source_urls = ['https://github.com/hpc/supermagic/archive'] + +preconfigopts = "./autogen && " + +configopts = "CC=$CC" + +sanity_check_paths = { + 'files': ['bin/supermagic'], + 'dirs': [], +} + +moduleclass = 'perf' -- GitLab From 412f729ccfb7874be251ebd8a8deb2109a41982f Mon Sep 17 00:00:00 2001 From: Jordi Blasco Date: Tue, 3 Oct 2017 08:38:47 +1300 Subject: [PATCH 655/845] Improved style, included download file_name and checksums as suggested --- .../s/supermagic/supermagic-20170824-foss-2017a.eb | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb index c5f90ae5c4..1f7d5ea1cd 100644 --- a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb +++ b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb @@ -9,6 +9,7 @@ easyblock = 'ConfigureMake' name = 'supermagic' version = '20170824' +git_commit_id = '07311ad853' homepage = 'https://github.com/hpc/supermagic' description = """Very simple MPI sanity code. Nothing more, nothing less.""" @@ -16,9 +17,13 @@ description = """Very simple MPI sanity code. Nothing more, nothing less.""" toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'usempi': True} -git_commit_id = '07311ad853' -sources = ['%s.tar.gz' % git_commit_id] +sources = [{ + 'filename': '%(git_commit_id)s.tar.gz', + 'download_filename': 'supermagic-%(version)s.tar.gz', + 'extract_cmd': "tar xfvz %s", +}] source_urls = ['https://github.com/hpc/supermagic/archive'] +checksums = ['080d7299d7ae528920882f5b87c86b709b22cc87b2fd4b9d72d495fd7856ef29'] preconfigopts = "./autogen && " -- GitLab From 4e0d2bfa9a69b3f7038b42a6bc52efc1bd469d79 Mon Sep 17 00:00:00 2001 From: Jordi Blasco Date: Tue, 3 Oct 2017 12:08:39 +1300 Subject: [PATCH 656/845] fix mistake in download file and filename --- .../s/supermagic/supermagic-20170824-foss-2017a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb index 1f7d5ea1cd..d30a02b553 100644 --- a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb +++ b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb @@ -18,8 +18,8 @@ toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'usempi': True} sources = [{ - 'filename': '%(git_commit_id)s.tar.gz', - 'download_filename': 'supermagic-%(version)s.tar.gz', + 'filename': 'supermagic-%(version)s.tar.gz', + 'download_filename': '%(git_commit_id)s.tar.gz', 'extract_cmd': "tar xfvz %s", }] source_urls = ['https://github.com/hpc/supermagic/archive'] -- GitLab From 650f4562e68bd5ae08d07e47b41fca77474674da Mon Sep 17 00:00:00 2001 From: Jordi Blasco Date: Tue, 3 Oct 2017 13:45:08 +1300 Subject: [PATCH 657/845] fix issues with the download_filename path --- .../s/supermagic/supermagic-20170824-foss-2017a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb index d30a02b553..ee33b1cf02 100644 --- a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb +++ b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb @@ -19,10 +19,10 @@ toolchainopts = {'usempi': True} sources = [{ 'filename': 'supermagic-%(version)s.tar.gz', - 'download_filename': '%(git_commit_id)s.tar.gz', + 'download_filename': '%s.tar.gz' % git_commit_id, 'extract_cmd': "tar xfvz %s", }] -source_urls = ['https://github.com/hpc/supermagic/archive'] +source_urls = ['https://github.com/hpc/supermagic/archive/'] checksums = ['080d7299d7ae528920882f5b87c86b709b22cc87b2fd4b9d72d495fd7856ef29'] preconfigopts = "./autogen && " -- GitLab From 03fff2ba2fab4ac10ddb5bba7bf40d01c2ef1e10 Mon Sep 17 00:00:00 2001 From: Jordi Blasco Date: Tue, 3 Oct 2017 14:09:54 +1300 Subject: [PATCH 658/845] fix indentation complains in unit testing --- .../s/supermagic/supermagic-20170824-foss-2017a.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb index ee33b1cf02..c731d8b865 100644 --- a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb +++ b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb @@ -18,9 +18,9 @@ toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'usempi': True} sources = [{ - 'filename': 'supermagic-%(version)s.tar.gz', - 'download_filename': '%s.tar.gz' % git_commit_id, - 'extract_cmd': "tar xfvz %s", + 'filename': 'supermagic-%(version)s.tar.gz', + 'download_filename': '%s.tar.gz' % git_commit_id, + 'extract_cmd': "tar xfvz %s", }] source_urls = ['https://github.com/hpc/supermagic/archive/'] checksums = ['080d7299d7ae528920882f5b87c86b709b22cc87b2fd4b9d72d495fd7856ef29'] -- GitLab From 3bd400c43fc3f55375774370ddd1edf198e0fb49 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 12:10:39 +0200 Subject: [PATCH 659/845] fix remarks --- .../i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb | 3 ++- .../x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb index 5d8bd01add..f3025b4bd1 100644 --- a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2017a-Perl-5.24.1.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'intltool' version = '0.51.0' -versionsuffix = '-Perl-5.24.1' +versionsuffix = '-Perl-%(perlver)s' homepage = 'http://freedesktop.org/wiki/Software/intltool/' description = """intltool is a set of tools to centralize translation of @@ -15,6 +15,7 @@ sources = [SOURCE_TAR_GZ] checksums = ['67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd'] dependencies = [ + ('Perl', '5.24.1'), ('XML-Parser', '2.44_01', versionsuffix), ] diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb index d2ee8216b0..3b78b0ddae 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-intel-2017a-Perl-5.24.1.eb @@ -25,4 +25,4 @@ sanity_check_paths = { 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], } -moduleclass = 'data' +moduleclass = 'tools' -- GitLab From 17922a4df0576be1684e8b0e6b1e3da9bc71817d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 14:08:17 +0200 Subject: [PATCH 660/845] adding easyconfigs: NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb --- ...NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..04b9bddd31 --- /dev/null +++ b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,45 @@ +easyblock = 'Bundle' + +name = 'NiBabel' +version = '2.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://nipy.github.io/nibabel' +description = """NiBabel provides read/write access to some common medical and neuroimaging file formats, + including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT + as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and + annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +dependencies = [ + ('Python', '2.7.13'), + ('PIL', '1.1.7', versionsuffix), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +exts_list = [ + ('pydicom', '0.9.9', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pydicom'], + 'start_dir': 'source', + 'modulename': 'dicom', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/n/nibabel'], + 'source_tmpl': 'nibabel-%(version)s.tar.gz', + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/nib-dicomfs', 'bin/nib-ls', 'bin/nib-nifti-dx', 'bin/parrec2nii'], + 'dirs': ['lib/python%(pyshortver)s/site-packages/nibabel', 'lib/python%(pyshortver)s/site-packages/nisext'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' -- GitLab From a7e54913081ee4e7f99b017d52201390748d73aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 14:18:54 +0200 Subject: [PATCH 661/845] use latest libjpeg-turbo (1.5.2) as dep for NiBabel, for compatibility with other easyconfigs (e.g. GTK+ 2.24.31) --- ...NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb | 2 +- ...2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb | 33 +++++++++++++++++++ 2 files changed, 34 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb diff --git a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb index 04b9bddd31..937e737909 100644 --- a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb @@ -14,7 +14,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} dependencies = [ ('Python', '2.7.13'), - ('PIL', '1.1.7', versionsuffix), + ('PIL', '1.1.7', versionsuffix + '-libjpeg-turbo-1.5.2'), ] # this is a bundle of Python packages diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb new file mode 100644 index 0000000000..3e6357c0bd --- /dev/null +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'PIL' +version = '1.1.7' +libjpeg_turbo_ver = '1.5.2' +versionsuffix = '-Python-%%(pyver)s-libjpeg-turbo-%s' % libjpeg_turbo_ver + +homepage = 'http://www.pythonware.com/products/pil' +description = """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. + This library supports many file formats, and provides powerful image processing and graphics capabilities.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://effbot.org/downloads/'] +sources = ['Imaging-%(version)s.tar.gz'] + +patches = ['PIL-%(version)s-find-deps.patch'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Python', '2.7.13'), + ('libjpeg-turbo', libjpeg_turbo_ver), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +options = {'modulename': 'PIL'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'vis' -- GitLab From da4d7234403165952148af2b59a581b26522a681 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 15:25:23 +0200 Subject: [PATCH 662/845] use modern PIL replacement Pillow as dep for NiBabel --- ...NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb | 2 +- ...2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb | 33 ------------------- .../Pillow-4.3.0-intel-2017a-Python-2.7.13.eb | 28 ++++++++++++++++ 3 files changed, 29 insertions(+), 34 deletions(-) delete mode 100644 easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb create mode 100644 easybuild/easyconfigs/p/Pillow/Pillow-4.3.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb index 937e737909..e70d0800bc 100644 --- a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb @@ -14,7 +14,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} dependencies = [ ('Python', '2.7.13'), - ('PIL', '1.1.7', versionsuffix + '-libjpeg-turbo-1.5.2'), + ('Pillow', '4.3.0', versionsuffix), ] # this is a bundle of Python packages diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb deleted file mode 100644 index 3e6357c0bd..0000000000 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13-libjpeg-turbo-1.5.2.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PIL' -version = '1.1.7' -libjpeg_turbo_ver = '1.5.2' -versionsuffix = '-Python-%%(pyver)s-libjpeg-turbo-%s' % libjpeg_turbo_ver - -homepage = 'http://www.pythonware.com/products/pil' -description = """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. - This library supports many file formats, and provides powerful image processing and graphics capabilities.""" - -toolchain = {'name': 'intel', 'version': '2017a'} - -source_urls = ['http://effbot.org/downloads/'] -sources = ['Imaging-%(version)s.tar.gz'] - -patches = ['PIL-%(version)s-find-deps.patch'] - -dependencies = [ - ('zlib', '1.2.11'), - ('Python', '2.7.13'), - ('libjpeg-turbo', libjpeg_turbo_ver), - ('freetype', '2.7.1', '-libpng-1.6.29'), -] - -options = {'modulename': 'PIL'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%(pyshortver)s/site-packages/%(name)s'], -} - -moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pillow/Pillow-4.3.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/Pillow/Pillow-4.3.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..9da668b52e --- /dev/null +++ b/easybuild/easyconfigs/p/Pillow/Pillow-4.3.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'Pillow' +version = '4.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://pillow.readthedocs.org/' +description = """Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. + PIL is the Python Imaging Library by Fredrik Lundh and Contributors.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['a97c715d44efd5b4aa8d739b8fad88b93ed79f1b33fc2822d5802043f3b1b527'] + +dependencies = [ + ('Python', '2.7.13'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.29'), + ('zlib', '1.2.11'), + ('LibTIFF', '4.0.8'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +options = {'modulename': 'PIL'} + +moduleclass = 'vis' -- GitLab From 97730bc13a8ff21c37eeed6cfce1f390f17be995 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 16:07:29 +0200 Subject: [PATCH 663/845] include checksums for NiBabel 2.1.0 --- .../NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb index e70d0800bc..9b33189e90 100644 --- a/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/n/NiBabel/NiBabel-2.1.0-intel-2017a-Python-2.7.13.eb @@ -22,13 +22,19 @@ exts_defaultclass = 'PythonPackage' exts_list = [ ('pydicom', '0.9.9', { + 'modulename': 'dicom', 'source_urls': ['https://pypi.python.org/packages/source/p/pydicom'], 'start_dir': 'source', - 'modulename': 'dicom', + 'checksums': [ + '09b82896319d9b0e5e95dae64875c37413b6ca9b974f4bb785564875f617236a', # pydicom-0.9.9.tar.gz + ], }), - (name, version, { - 'source_urls': ['https://pypi.python.org/packages/source/n/nibabel'], + ('NiBabel', '2.1.0', { 'source_tmpl': 'nibabel-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/n/nibabel'], + 'checksums': [ + '9cc37ed9107319aca79177e3fed422da9677606bd72cf5697f14fc5a4b3a2738', # nibabel-2.1.0.tar.gz + ], }), ] -- GitLab From b75859eeb4abb940f3c6eedbc59c1e111dacee62 Mon Sep 17 00:00:00 2001 From: iotaka Date: Tue, 3 Oct 2017 16:12:09 +0200 Subject: [PATCH 664/845] libyaml 0.1.6 --- .../l/libyaml/libyaml-0.1.6-foss-2016b.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-foss-2016b.eb diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-foss-2016b.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-foss-2016b.eb new file mode 100644 index 0000000000..1f7dc3171c --- /dev/null +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-foss-2016b.eb @@ -0,0 +1,28 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'ConfigureMake' + +name = 'libyaml' +version = '0.1.6' + +homepage = 'http://pyyaml.org/wiki/LibYAML' +description = """LibYAML is a YAML 1.1 parser and emitter written in C.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = ['yaml-%(version)s.tar.gz'] +source_urls = ['http://pyyaml.org/download/libyaml/'] + +sanity_check_paths = { + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], + 'dirs': ["lib/pkgconfig"] +} + +moduleclass = 'lib' -- GitLab From e52587e1cd46f380aa02134964942209736a0a04 Mon Sep 17 00:00:00 2001 From: iotaka Date: Tue, 3 Oct 2017 16:12:38 +0200 Subject: [PATCH 665/845] PyYAML 3.12 --- .../PyYAML-3.12-foss-2016b-Python-2.7.12.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-foss-2016b-Python-2.7.12.eb diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000..b0fa631b68 --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'PyYAML' +version = '3.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = "https://pypi.python.org/pypi/PyYAML/" +description = """PyYAML is a YAML parser and emitter for the Python programming language.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.12'), + ('libyaml', '0.1.6'), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' -- GitLab From 8b7ee55c2c57d25bc945304c0dbe277a0d836f01 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 16:56:40 +0200 Subject: [PATCH 666/845] {vis}[intel/2017a] wxPython v3.0.2.0 --- .../d/DBus/DBus-1.11.20-intel-2017a.eb | 25 +++++++++++ .../dbus-glib/dbus-glib-0.108-intel-2017a.eb | 25 +++++++++++ .../g/GConf/GConf-3.2.6-intel-2017a.eb | 39 ++++++++++++++++++ .../GST-plugins-base-0.10.36-intel-2017a.eb | 35 ++++++++++++++++ .../GStreamer-0.10.36-intel-2017a.eb | 40 ++++++++++++++++++ ...ython-3.0.2.0-intel-2017a-Python-2.7.13.eb | 41 +++++++++++++++++++ .../wxPython-3.0.2.0_fix-abs-overload.patch | 26 ++++++++++++ 7 files changed, 231 insertions(+) create mode 100644 easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb create mode 100644 easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb create mode 100644 easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb create mode 100644 easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb create mode 100644 easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb create mode 100644 easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0_fix-abs-overload.patch diff --git a/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb b/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb new file mode 100644 index 0000000000..1c1264db2b --- /dev/null +++ b/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'DBus' +version = '1.11.20' + +homepage = 'http://dbus.freedesktop.org/doc/dbus-glib' +description = """D-Bus is a message bus system, a simple way for applications to talk + to one another. In addition to interprocess communication, D-Bus helps + coordinate process lifecycle; it makes it simple and reliable to code + a "single instance" application or daemon, and to launch applications + and daemons on demand when their services are needed.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://dbus.freedesktop.org/releases/dbus'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/dbus-%s' % x for x in ['cleanup-sockets', 'daemon', 'launch', 'monitor', 'run-session', + 'send', 'uuidgen']] + + ['lib/libdbus-1.%s' % x for x in ['a', SHLIB_EXT]], + 'dirs': ['include', 'share'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb b/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb new file mode 100644 index 0000000000..c922f19bdb --- /dev/null +++ b/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'dbus-glib' +version = '0.108' + +homepage = 'http://dbus.freedesktop.org/doc/dbus-glib' +description = """D-Bus is a message bus system, a simple way for applications to talk to one another.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://dbus.freedesktop.org/releases/dbus-glib'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('GLib', '2.53.5'), + ('DBus', '1.11.20'), + ('expat', '2.2.0'), +] + +sanity_check_paths = { + 'files': ['bin/dbus-binding-tool', 'lib/libdbus-glib-1.%s' % SHLIB_EXT, 'lib/libdbus-glib-1.a'], + 'dirs': ['include', 'share'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb new file mode 100644 index 0000000000..693eab372e --- /dev/null +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'GConf' +version = '3.2.6' + +homepage = 'https://projects.gnome.org/gconf/' +description = """GConf is a system for storing application preferences. + It is intended for user preferences; not configuration + of something like Apache, or arbitrary data storage.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://ftp.gnome.org/pub/GNOME/sources/GConf/%(version_major_minor)s/'] +sources = [SOURCE_TAR_XZ] + +dependencies = [ + ('dbus-glib', '0.108'), + ('GLib', '2.53.5'), + ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), + ('libxml2', '2.9.4'), + ('GTK+', '2.24.31'), + ('intltool', '0.51.0', '-Perl-5.24.1'), +] + +configopts = '--disable-orbit ' + +sanity_check_paths = { + 'files': ['bin/gconf%s' % x for x in['-merge-tree', 'tool-2']] + + ['bin/gsettings-%s-convert' % x for x in ['data', 'schema']] + + ['lib/libgconf-2.%s' % x for x in['a', 'so']], + 'dirs': ['include', 'share'] +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb b/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb new file mode 100644 index 0000000000..0c46a1f897 --- /dev/null +++ b/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'GST-plugins-base' +version = '0.10.36' + +homepage = 'http://gstreamer.freedesktop.org/' +description = """GStreamer is a library for constructing graphs of media-handling + components. The applications it supports range from simple + Ogg/Vorbis playback, audio/video streaming to complex audio + (mixing) and video (non-linear editing) processing.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://gstreamer.freedesktop.org/src/gst-plugins-base'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [('GStreamer', '0.10.36')] + +# does not work with Bison 3.x +builddependencies = [ + ('Bison', '2.7', '', True), +] + +sanity_check_paths = { + 'files': ['bin/gst-%s-%%(version_major_minor)s' % x for x in ['discoverer', 'visualise']] + + ['lib/libgst%s-%%(version_major_minor)s.%s' % (x, SHLIB_EXT) for x in ['app', 'audio', 'video']], + 'dirs': ['include', 'share'] +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb b/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb new file mode 100644 index 0000000000..0989709215 --- /dev/null +++ b/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'GStreamer' +version = '0.10.36' + +homepage = 'http://gstreamer.freedesktop.org/' +description = """GStreamer is a library for constructing graphs of media-handling + components. The applications it supports range from simple + Ogg/Vorbis playback, audio/video streaming to complex audio + (mixing) and video (non-linear editing) processing.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://gstreamer.freedesktop.org/src/gstreamer'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('GLib', '2.53.5'), + ('GObject-Introspection', '1.53.5', '-Python-2.7.13'), + ('zlib', '1.2.11'), +] + +# does not work with Bison 3.x +builddependencies = [ + ('Bison', '2.7', '', True), +] + +sanity_check_paths = { + 'files': ['bin/gst-%s-%%(version_major_minor)s' % x for x in ['inspect', 'typefind', 'launch']] + + ['lib/libgst%s-%%(version_major_minor)s.%s' % (x, SHLIB_EXT) for x in ['reamer', 'base', + 'controller', 'check']], + 'dirs': ['include', 'share', 'libexec'], +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..eb24d32305 --- /dev/null +++ b/easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,41 @@ +name = 'wxPython' +version = '3.0.2.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.wxpython.org' +description = """wxPython is a GUI toolkit for the Python programming language. + It allows Python programmers to create programs with a robust, + highly functional graphical user interface, simply and easily. + It is implemented as a Python extension module (native code) + that wraps the popular wxWidgets cross platform GUI library, + which is written in C++.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-src-%(version)s.tar.bz2'] +patches = [ + 'wxPython_%(version)s_intel.patch', + 'wxPython-%(version)s_fix-abs-overload.patch', +] +checksums = [ + 'd54129e5fbea4fb8091c87b2980760b72c22a386cb3b9dd2eebc928ef5e8df61', # wxPython-src-3.0.2.0.tar.bz2 + 'fa7edb55e0c0ad18f636f9d9af7d2ee4cf3be439c78db5cae6d0ee47130f0ec6', # wxPython_3.0.2.0_intel.patch + '7bc2d671af6cd79930275c9e59c42a7c79ee6d66329190ac13df690f5def4d94', # wxPython-3.0.2.0_fix-abs-overload.patch +] + +dependencies = [ + ('Python', '2.7.13'), + ('libpng', '1.6.29'), + ('zlib', '1.2.11'), + ('libjpeg-turbo', '1.5.2'), + ('LibTIFF', '4.0.8'), + ('expat', '2.2.0'), + ('GTK+', '2.24.31'), + ('GConf', '3.2.6'), + ('GST-plugins-base', '0.10.36'), + ('Mesa', '17.0.2'), + ('libGLU', '9.0.0'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0_fix-abs-overload.patch b/easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0_fix-abs-overload.patch new file mode 100644 index 0000000000..c0d81efff1 --- /dev/null +++ b/easybuild/easyconfigs/w/wxPython/wxPython-3.0.2.0_fix-abs-overload.patch @@ -0,0 +1,26 @@ +fix for: error: more than one instance of overloaded function "abs" matches the argument list +see https://github.com/wxWidgets/wxWidgets/commit/73e9e18ea09ffffcaac50237def0d9728a213c02 +diff --git a/src/stc/scintilla/src/Editor.cxx b/src/stc/scintilla/src/Editor.cxx +index cd72953ae79..2081df28a51 100644 +--- a/src/stc/scintilla/src/Editor.cxx ++++ b/src/stc/scintilla/src/Editor.cxx +@@ -11,6 +11,7 @@ + #include + #include + ++#include + #include + #include + #include +@@ -5841,9 +5842,9 @@ void Editor::GoToLine(int lineNo) { + } + + static bool Close(Point pt1, Point pt2) { +- if (abs(pt1.x - pt2.x) > 3) ++ if (std::abs(pt1.x - pt2.x) > 3) + return false; +- if (abs(pt1.y - pt2.y) > 3) ++ if (std::abs(pt1.y - pt2.y) > 3) + return false; + return true; + } -- GitLab From 917c2ed8639f77f18055959bed7784b74d47959f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 17:04:31 +0200 Subject: [PATCH 667/845] adding easyconfigs: FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb --- ...SLeyes-0.15.0-intel-2017a-Python-2.7.13.eb | 66 +++++++++++++++++++ 1 file changed, 66 insertions(+) create mode 100644 easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..2d94daf4d5 --- /dev/null +++ b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,66 @@ +easyblock = 'Bundle' + +name = 'FSLeyes' +version = '0.15.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes' +description = "FSLeyes is the FSL image viewer." + +toolchain = {'name': 'intel', 'version': '2017a'} + +dependencies = [ + ('Python', '2.7.13'), + ('matplotlib', '2.0.2', versionsuffix + '-libpng-1.6.29'), + ('wxPython', '3.0.2.0', versionsuffix), + ('NiBabel', '2.1.0', versionsuffix), + ('Pillow', '4.3.0', versionsuffix), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +exts_list = [ + ('indexed-gzip', '0.6.0', { + # source tarball on PyPI is crippled, missing zran.h? + 'source_urls': ['https://github.com/pauldmccarthy/indexed_gzip/archive/'], + 'source_tmpl': 'v%(version)s.tar.gz', + 'modulename': 'indexed_gzip', + }), + ('PyOpenGL-accelerate', '3.1.1a1', { + 'source_urls': ['https://pypi.python.org/packages/source/P/PyOpenGL-accelerate'], + 'modulename': 'OpenGL_accelerate', + }), + ('PyOpenGL', '3.1.1a1', { + 'source_urls': ['https://pypi.python.org/packages/source/P/PyOpenGL'], + 'modulename': 'OpenGL', + }), + ('fsleyes-widgets', '0.0.6', { + 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes-widgets'], + 'modulename': 'fsleyes_widgets', + }), + ('fsleyes-props', '1.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes-props'], + 'modulename': 'fsleyes_props', + }), + ('fslpy', '1.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/f/fslpy'], + 'modulename': 'fsl', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes'], + 'source_tmpl': 'fsleyes-%(version)s.tar.gz', + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' -- GitLab From eed5f624c9e6e647fe9d315bb501b9f32be64f01 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 17:45:16 +0200 Subject: [PATCH 668/845] add missing required Jinja2 extension --- .../f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb index 2d94daf4d5..ee078603ab 100644 --- a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb @@ -21,6 +21,9 @@ dependencies = [ exts_defaultclass = 'PythonPackage' exts_list = [ + ('Jinja2', '2.9.6', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2'], + }), ('indexed-gzip', '0.6.0', { # source tarball on PyPI is crippled, missing zran.h? 'source_urls': ['https://github.com/pauldmccarthy/indexed_gzip/archive/'], -- GitLab From e6eff7b59a45f1d3e96055ab058bc714e19cc0bc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 17:49:18 +0200 Subject: [PATCH 669/845] add missing freeglut dependency for FSLeyes --- .../f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb index ee078603ab..0afb67d70d 100644 --- a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb @@ -13,6 +13,7 @@ dependencies = [ ('Python', '2.7.13'), ('matplotlib', '2.0.2', versionsuffix + '-libpng-1.6.29'), ('wxPython', '3.0.2.0', versionsuffix), + ('freeglut', '3.0.0'), ('NiBabel', '2.1.0', versionsuffix), ('Pillow', '4.3.0', versionsuffix), ] -- GitLab From 3228a609f4a212ef852568258f56b0dc9b12a9c6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 19:51:26 +0200 Subject: [PATCH 670/845] add missing checksums --- easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb | 1 + easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb | 1 + easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb | 1 + .../g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb | 1 + .../easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb | 1 + 5 files changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb b/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb index 1c1264db2b..9e6fb5c34a 100644 --- a/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb +++ b/easybuild/easyconfigs/d/DBus/DBus-1.11.20-intel-2017a.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://dbus.freedesktop.org/releases/dbus'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7fd9d0536f7ec2f2afc94b84d5b5487f88c464e8d47c661d8e0b54aa83974bfa'] sanity_check_paths = { 'files': ['bin/dbus-%s' % x for x in ['cleanup-sockets', 'daemon', 'launch', 'monitor', 'run-session', diff --git a/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb b/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb index c922f19bdb..4007342807 100644 --- a/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb +++ b/easybuild/easyconfigs/d/dbus-glib/dbus-glib-0.108-intel-2017a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://dbus.freedesktop.org/releases/dbus-glib'] sources = [SOURCE_TAR_GZ] +checksums = ['9f340c7e2352e9cdf113893ca77ca9075d9f8d5e81476bf2bf361099383c602c'] dependencies = [ ('GLib', '2.53.5'), diff --git a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb index 693eab372e..f298ef1908 100644 --- a/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GConf/GConf-3.2.6-intel-2017a.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://ftp.gnome.org/pub/GNOME/sources/GConf/%(version_major_minor)s/'] sources = [SOURCE_TAR_XZ] +checksums = ['1912b91803ab09a5eed34d364bf09fe3a2a9c96751fde03a4e0cfa51a04d784c'] dependencies = [ ('dbus-glib', '0.108'), diff --git a/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb b/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb index 0c46a1f897..a30aaa0e3e 100644 --- a/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GST-plugins-base/GST-plugins-base-0.10.36-intel-2017a.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://gstreamer.freedesktop.org/src/gst-plugins-base'] sources = [SOURCELOWER_TAR_XZ] +checksums = ['1fe45c3894903001d4d008b0713dab089f53726dcb5842d5b40c2595a984e64a'] dependencies = [('GStreamer', '0.10.36')] diff --git a/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb b/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb index 0989709215..78f9a19c5c 100644 --- a/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://gstreamer.freedesktop.org/src/gstreamer'] sources = [SOURCELOWER_TAR_XZ] +checksums = ['9151aa108c177054387885763fa0e433e76780f7c5655c70a5390f2a6c6871da'] dependencies = [ ('GLib', '2.53.5'), -- GitLab From 2d03139c0949ddba74aeb348bcde337f3ff4247b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Oct 2017 20:00:43 +0200 Subject: [PATCH 671/845] add flex + use proper Bison dep for GStreamer --- .../b/Bison/Bison-2.7-GCCcore-6.3.0.eb | 26 +++++++++++++++++++ .../GStreamer-0.10.36-intel-2017a.eb | 3 ++- 2 files changed, 28 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-2.7-GCCcore-6.3.0.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCCcore-6.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..e09b14dada --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCCcore-6.3.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.7' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar +into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['19bbe7374fd602f7a6654c131c21a15aebdc06cc89493e8ff250cb7f9ed0a831'] + +builddependencies = [ + ('binutils', '2.27'), + ('M4', '1.4.18'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb b/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb index 78f9a19c5c..32f3d42dc2 100644 --- a/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GStreamer/GStreamer-0.10.36-intel-2017a.eb @@ -23,7 +23,8 @@ dependencies = [ # does not work with Bison 3.x builddependencies = [ - ('Bison', '2.7', '', True), + ('flex', '2.6.4'), + ('Bison', '2.7'), ] sanity_check_paths = { -- GitLab From 4c6355cac4bc5c6012f2d1afd82baf87a3f81b69 Mon Sep 17 00:00:00 2001 From: Jordi Blasco Pallares Date: Wed, 4 Oct 2017 12:50:34 +1300 Subject: [PATCH 672/845] removed extract_cmd as suggested --- .../easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb index c731d8b865..b0cec6be4f 100644 --- a/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb +++ b/easybuild/easyconfigs/s/supermagic/supermagic-20170824-foss-2017a.eb @@ -20,7 +20,6 @@ toolchainopts = {'usempi': True} sources = [{ 'filename': 'supermagic-%(version)s.tar.gz', 'download_filename': '%s.tar.gz' % git_commit_id, - 'extract_cmd': "tar xfvz %s", }] source_urls = ['https://github.com/hpc/supermagic/archive/'] checksums = ['080d7299d7ae528920882f5b87c86b709b22cc87b2fd4b9d72d495fd7856ef29'] -- GitLab From 9b42e544d877aea1f0de5d4198f0379885faa08a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 4 Oct 2017 11:13:14 +0200 Subject: [PATCH 673/845] adding easyconfigs: oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb --- ...3.9.6-intel-2017a-centos7-Python-2.7.13.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb b/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb new file mode 100644 index 0000000000..fd44268e9e --- /dev/null +++ b/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb @@ -0,0 +1,34 @@ +easyblock = 'Tarball' + +name = 'oxford_asl' +version = '3.9.6' +versionsuffix = '-centos7-Python-%(pyver)s' + +homepage = 'https://github.com/ibme-qubic/oxford_asl' +description = "A command line tool for quantification of perfusion from ASL data" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/ibme-qubic/oxford_asl/files/1292633'] +sources = ['oxford_asl-%(version)s%(versionsuffix)s.tar.gz'] + +dependencies = [ + ('FSL', '5.0.10'), + ('Python', '2.7.13'), +] + +sanity_check_paths = { + 'files': ['asl_file', 'basil', 'epi_reg', 'fabber_asl', 'quasil'], + 'dirs': ['asl'], +} +sanity_check_commands = [ + "asl_file --help", + "python -c 'import asl'", +] + +modextrapaths = { + 'PATH': '', + 'PYTHONPATH': '', +} + +moduleclass = 'bio' -- GitLab From beb9a3953306ce0d74ed93151f03396c3c0f9584 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Wed, 4 Oct 2017 11:41:03 +0200 Subject: [PATCH 674/845] upgrade to version 1.5.5 --- ...EE-1.4.4-foss-2016a-mpi.eb => IQ-TREE-1.5.5-foss-2016a-mpi.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/i/IQ-TREE/{IQ-TREE-1.4.4-foss-2016a-mpi.eb => IQ-TREE-1.5.5-foss-2016a-mpi.eb} (100%) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.4.4-foss-2016a-mpi.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb similarity index 100% rename from easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.4.4-foss-2016a-mpi.eb rename to easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb -- GitLab From 8218b6114f0134a072b77b6222926ef59517da92 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Wed, 4 Oct 2017 15:24:07 +0200 Subject: [PATCH 675/845] update version, source url, builddep --- .../i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb index c29c71702d..98f91ab77c 100644 --- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb @@ -1,6 +1,6 @@ easyblock = 'CMakeMake' name = 'IQ-TREE' -version = '1.4.4' +version = '1.5.5' versionsuffix = "-mpi" homepage = 'http://www.iqtree.org/' @@ -8,11 +8,15 @@ description = """Efficient phylogenomic software by maximum likelihood""" toolchain = {'name': 'foss', 'version': '2016a'} -source_urls = ['https://github.com/Cibiv/IQ-TREE/archive/'] -sources = ['v%(version)s-mpi.tar.gz'] +github_account = 'Cibiv' + +source_urls = [GITHUB_SOURCE] +sources = ['v%(version)s.tar.gz'] configopts = '-DIQTREE_FLAGS="mpi omp" -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx' +builddependencies = [('CMake', '3.5.2')] + sanity_check_paths = { 'files': ["bin/iqtree-omp-mpi"], 'dirs': ["bin"], -- GitLab From 43aa036972406ea893d5d83cc7d3a7cc99fd8574 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 4 Oct 2017 18:31:02 +0200 Subject: [PATCH 676/845] adding easyconfigs: mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb, mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb, lxml-4.0.0-intel-2017a-Python-2.7.13.eb, libxml2-2.9.5-GCCcore-6.3.0.eb, libxslt-1.1.30-intel-2017a.eb --- .../l/libxml2/libxml2-2.9.5-GCCcore-6.3.0.eb | 27 ++++++++++++++ .../l/libxslt/libxslt-1.1.30-intel-2017a.eb | 24 ++++++++++++ .../lxml-4.0.0-intel-2017a-Python-2.7.13.eb | 27 ++++++++++++++ ...ntel-2017a-Python-2.7.13-timed-pingpong.eb | 37 +++++++++++++++++++ ...ingpong-0.8.0-intel-2017a-Python-2.7.13.eb | 34 +++++++++++++++++ 5 files changed, 149 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.5-GCCcore-6.3.0.eb create mode 100644 easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb create mode 100644 easybuild/easyconfigs/l/lxml/lxml-4.0.0-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb create mode 100644 easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.5-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.5-GCCcore-6.3.0.eb new file mode 100644 index 0000000000..8452f3187e --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.5-GCCcore-6.3.0.eb @@ -0,0 +1,27 @@ +name = 'libxml2' +version = '2.9.5' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['4031c1ecee9ce7ba4f313e91ef6284164885cdb69937a123f6a83bb6a72dcd38'] + +dependencies = [ + ('zlib', '1.2.11'), + ('XZ', '5.2.3'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb new file mode 100644 index 0000000000..ea51b7fdd4 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.30' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ba65236116de8326d83378b2bd929879fa185195bc530b9d1aba72107910b6b3'] + +dependencies = [ + ('zlib', '1.2.11'), + ('libxml2', '2.9.5'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/lxml/lxml-4.0.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/l/lxml/lxml-4.0.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..e36d505f94 --- /dev/null +++ b/easybuild/easyconfigs/l/lxml/lxml-4.0.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'lxml' +version = '4.0.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://lxml.de/' +description = """The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://lxml.de/files/'] +sources = [SOURCE_TGZ] +checksums = ['f7bc9f702500e205b1560d620f14015fec76dcd6f9e889a946a2ddcc3c344fd0'] + +dependencies = [ + ('Python', '2.7.13'), + ('libxml2', '2.9.5'), + ('libxslt', '1.1.30'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb new file mode 100644 index 0000000000..427de1f61c --- /dev/null +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb @@ -0,0 +1,37 @@ +easyblock = 'PythonPackage' + +name = 'mpi4py' +version = '1.3.1' +label = 'timed-pingpong' +versionsuffix = '-Python-%%(pyver)s-%s' % label + +homepage = 'https://bitbucket.org/mpi4py/mpi4py' +description = """MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for + the Python programming language, allowing any Python program to exploit multiple processors.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +patches = ['mpi4py-%%(version)s_%s.patch' % label] +checksums = [ + 'e7bd2044aaac5a6ea87a87b2ecc73b310bb6efe5026031e33067ea3c2efc3507', # mpi4py-1.3.1.tar.gz + '50c3c4032563afda15ab51a5002c4646da361a006398e74d16ee0d433dd92792', # mpi4py-1.3.1_timed-pingpong.patch +] + +dependencies = [('Python', '2.7.13')] + +# force rebuilding everything, including patched files +buildopts = '--force' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/mpi4py'], +} + +# check that timed pingpong routines that are added via the patch are available +sanity_check_commands = [ + ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..cebdc04cc6 --- /dev/null +++ b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'mympingpong' +version = '0.8.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/hpcugent/mympingpong' +description = """A mpi4py based random pair pingpong network stress test.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['ebc056374a071e49cd13c49c4d5274cf4eee6eb68a7c9033ba2929db27b8bfac'] + +dependencies = [ + ('Python', '2.7.13'), + ('vsc-base', '2.5.8', '', True), + ('vsc-mympirun', '4.0.2', '', True), + ('matplotlib', '2.0.2', versionsuffix), + ('h5py', '2.7.1', versionsuffix), + ('mpi4py', '1.3.1', versionsuffix + '-timed-pingpong'), + ('lxml', '4.0.0', versionsuffix), + ('hwloc', '1.11.8'), +] + +options = {'modulename': 'vsc.mympingpong'} + +sanity_check_paths = { + 'files': ['bin/mympingpong', 'bin/mympingponganalysis'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'perf' -- GitLab From ba2953873d1f2c3d39d68f5cf8f135cb642747f5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 4 Oct 2017 21:31:32 +0200 Subject: [PATCH 677/845] use mpi4py 2.0.0 rather than 1.3.1 (required for h5py) --- ...pi4py-2.0.0-intel-2017a-Python-2.7.13-timed-pingpong.eb} | 6 +++--- .../mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb | 4 +++- 2 files changed, 6 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/m/mpi4py/{mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb => mpi4py-2.0.0-intel-2017a-Python-2.7.13-timed-pingpong.eb} (86%) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2017a-Python-2.7.13-timed-pingpong.eb similarity index 86% rename from easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb rename to easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2017a-Python-2.7.13-timed-pingpong.eb index 427de1f61c..ceeee49131 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2017a-Python-2.7.13-timed-pingpong.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2017a-Python-2.7.13-timed-pingpong.eb @@ -1,7 +1,7 @@ easyblock = 'PythonPackage' name = 'mpi4py' -version = '1.3.1' +version = '2.0.0' label = 'timed-pingpong' versionsuffix = '-Python-%%(pyver)s-%s' % label @@ -13,9 +13,9 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] -patches = ['mpi4py-%%(version)s_%s.patch' % label] +patches = ['mpi4py-1.3.1_%s.patch' % label] checksums = [ - 'e7bd2044aaac5a6ea87a87b2ecc73b310bb6efe5026031e33067ea3c2efc3507', # mpi4py-1.3.1.tar.gz + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz '50c3c4032563afda15ab51a5002c4646da361a006398e74d16ee0d433dd92792', # mpi4py-1.3.1_timed-pingpong.patch ] diff --git a/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb index cebdc04cc6..e56d7c03b5 100644 --- a/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.8.0-intel-2017a-Python-2.7.13.eb @@ -19,11 +19,13 @@ dependencies = [ ('vsc-mympirun', '4.0.2', '', True), ('matplotlib', '2.0.2', versionsuffix), ('h5py', '2.7.1', versionsuffix), - ('mpi4py', '1.3.1', versionsuffix + '-timed-pingpong'), + ('mpi4py', '2.0.0', versionsuffix + '-timed-pingpong'), ('lxml', '4.0.0', versionsuffix), ('hwloc', '1.11.8'), ] +preinstallopts = "sed -i 's/mpi4py < 2.0.0/mpi4py/g' setup.py && " + options = {'modulename': 'vsc.mympingpong'} sanity_check_paths = { -- GitLab From 5dc181bbce12946e3ca536ba168c18d499213c91 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 4 Oct 2017 22:34:27 +0200 Subject: [PATCH 678/845] use GCCcore/6.3.0 toolchain for libxslt --- ...1.1.30-intel-2017a.eb => libxslt-1.1.30-GCCcore-6.3.0.eb} | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/l/libxslt/{libxslt-1.1.30-intel-2017a.eb => libxslt-1.1.30-GCCcore-6.3.0.eb} (74%) diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-GCCcore-6.3.0.eb similarity index 74% rename from easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb rename to easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-GCCcore-6.3.0.eb index ea51b7fdd4..d33516e092 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-intel-2017a.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.30-GCCcore-6.3.0.eb @@ -7,7 +7,7 @@ homepage = 'http://xmlsoft.org/' description = """Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).""" -toolchain = {'name': 'intel', 'version': '2017a'} +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = [ 'http://xmlsoft.org/sources/', @@ -16,6 +16,9 @@ source_urls = [ sources = [SOURCELOWER_TAR_GZ] checksums = ['ba65236116de8326d83378b2bd929879fa185195bc530b9d1aba72107910b6b3'] +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + dependencies = [ ('zlib', '1.2.11'), ('libxml2', '2.9.5'), -- GitLab From ad37b2e19ccf65f11aa48a038f5377d9a6bf64f2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Oct 2017 15:18:18 +0200 Subject: [PATCH 679/845] include checksums --- ...SLeyes-0.15.0-intel-2017a-Python-2.7.13.eb | 41 +++++++++++++++---- 1 file changed, 32 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb index 0afb67d70d..20066de79d 100644 --- a/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/f/FSLeyes/FSLeyes-0.15.0-intel-2017a-Python-2.7.13.eb @@ -24,36 +24,59 @@ exts_defaultclass = 'PythonPackage' exts_list = [ ('Jinja2', '2.9.6', { 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2'], + 'checksums': [ + 'ddaa01a212cd6d641401cb01b605f4a4d9f37bfc93043d7f760ec70fb99ff9ff', # Jinja2-2.9.6.tar.gz + ], }), ('indexed-gzip', '0.6.0', { - # source tarball on PyPI is crippled, missing zran.h? - 'source_urls': ['https://github.com/pauldmccarthy/indexed_gzip/archive/'], - 'source_tmpl': 'v%(version)s.tar.gz', 'modulename': 'indexed_gzip', + 'source_tmpl': 'v%(version)s.tar.gz', + 'source_urls': ['https://github.com/pauldmccarthy/indexed_gzip/archive/'], + 'checksums': [ + '3b9a2e60601b8d41fa9f9597cd803abf4c88a3087fa288411c03a3ec31abb6a8', # v0.6.0.tar.gz + ], }), ('PyOpenGL-accelerate', '3.1.1a1', { - 'source_urls': ['https://pypi.python.org/packages/source/P/PyOpenGL-accelerate'], 'modulename': 'OpenGL_accelerate', + 'source_urls': ['https://pypi.python.org/packages/source/P/PyOpenGL-accelerate'], + 'checksums': [ + '3d37af9f2565febf214e1da2a5fe019561992d34026ce2a5f51972e121b84cdd', # PyOpenGL-accelerate-3.1.1a1.tar.gz + ], }), ('PyOpenGL', '3.1.1a1', { - 'source_urls': ['https://pypi.python.org/packages/source/P/PyOpenGL'], 'modulename': 'OpenGL', + 'source_urls': ['https://pypi.python.org/packages/source/P/PyOpenGL'], + 'checksums': [ + 'c96d909b359abe3271b746bacf7e6ba52935141e2406a8f90231e4e44dfa4075', # PyOpenGL-3.1.1a1.tar.gz + ], }), ('fsleyes-widgets', '0.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes-widgets'], 'modulename': 'fsleyes_widgets', + 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes-widgets'], + 'checksums': [ + '24029ae8b7b5dd917e643dfd8ba8385b28979833b6a977437fc3b0dbe45e3b1f', # fsleyes-widgets-0.0.6.tar.gz + ], }), ('fsleyes-props', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes-props'], 'modulename': 'fsleyes_props', + 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes-props'], + 'checksums': [ + 'd18f186ede16bb7f96d838ecc8b933e84fb5e99dd3294af70cf727b72d6b0a3a', # fsleyes-props-1.2.1.tar.gz + ], }), ('fslpy', '1.2.0', { - 'source_urls': ['https://pypi.python.org/packages/source/f/fslpy'], 'modulename': 'fsl', + 'source_urls': ['https://pypi.python.org/packages/source/f/fslpy'], + 'checksums': [ + '3978c81773823046bfea7eb41aa273a00bbb01faddcc3621974d204ed2fcb8b6', # fslpy-1.2.0.tar.gz + ], }), (name, version, { - 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes'], 'source_tmpl': 'fsleyes-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/f/fsleyes'], + 'checksums': [ + 'e1feadd322b8cbd8714f239ebc3246a4317f26079116397f4b555d3aeb29fe02', # fsleyes-0.15.0.tar.gz + ], }), ] -- GitLab From 056906d13b6ab7076c0aa5e344c8be07f66b67eb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Oct 2017 16:49:34 +0200 Subject: [PATCH 680/845] add ComplexHeatmap to Bioconductor 3.5 bundle + dep pkgs in R 3.4.0 easyconfig --- .../R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb | 1 + easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb | 4 ++++ 2 files changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb index 43f571de80..4eb3ffe0f7 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb @@ -161,6 +161,7 @@ exts_list = [ ('scater', '1.4.0', bioconductor_options), ('scran', '1.4.5', bioconductor_options), ('SC3', '1.4.2', bioconductor_options), + ('ComplexHeatmap', '1.14.0', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index c3718403dc..0c862a332d 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -556,6 +556,10 @@ exts_list = [ ('timereg', '1.9.1', ext_options), ('peperr', '1.1-7', ext_options), ('heatmap3', '1.1.1', ext_options), + ('GlobalOptions', '0.0.12', ext_options), + ('circlize', '0.4.1', ext_options), + ('GetoptLong', '0.1.6', ext_options), + ('dendextend', '1.5.2', ext_options), ] moduleclass = 'lang' -- GitLab From 01adbcf3934765bcfe43ac9f0926878a23b4eeec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Oct 2017 19:05:49 +0200 Subject: [PATCH 681/845] include checksum for oxford_asl easyconfig --- .../oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb b/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb index fd44268e9e..433f9c40fd 100644 --- a/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb +++ b/easybuild/easyconfigs/o/oxford_asl/oxford_asl-3.9.6-intel-2017a-centos7-Python-2.7.13.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['https://github.com/ibme-qubic/oxford_asl/files/1292633'] sources = ['oxford_asl-%(version)s%(versionsuffix)s.tar.gz'] +checksums = ['394cc20f37456914a89f509ad8a7868c30c93c4f51daaa254afcb0860a200d1f'] dependencies = [ ('FSL', '5.0.10'), -- GitLab From 52727c25acfe3d8f1d2953b83f566d71073af779 Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Fri, 6 Oct 2017 11:20:14 +0200 Subject: [PATCH 682/845] Version bump --- ...ython-2.7.12.eb => ASE-3.15.0-foss-2016b-Python-2.7.12.eb} | 4 ++-- ...-Python-3.5.2.eb => ASE-3.15.0-foss-2016b-Python-3.5.2.eb} | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/a/ASE/{ASE-3.14.1-foss-2016b-Python-2.7.12.eb => ASE-3.15.0-foss-2016b-Python-2.7.12.eb} (84%) rename easybuild/easyconfigs/a/ASE/{ASE-3.14.1-foss-2016b-Python-3.5.2.eb => ASE-3.15.0-foss-2016b-Python-3.5.2.eb} (84%) diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2016b-Python-2.7.12.eb similarity index 84% rename from easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb rename to easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2016b-Python-2.7.12.eb index d36b53e736..089c6cc345 100644 --- a/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2016b-Python-2.7.12.eb @@ -1,7 +1,7 @@ easyblock = 'PythonPackage' name = 'ASE' -version = '3.14.1' +version = '3.15.0' versionsuffix = '-Python-%(pyver)s' homepage = 'http://wiki.fysik.dtu.dk/ase' @@ -12,7 +12,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['e65862336cf2633b7dfe03e9bddd9bd24e0fb88fa767b059ab6b6aeb35e94af2'] +checksums = ['5e22d961b1311ef4ba2d83527f7cc7448abac8cf9bddd1593bee548459263fe8'] dependencies = [ ('Python', '2.7.12'), diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2016b-Python-3.5.2.eb similarity index 84% rename from easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb rename to easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2016b-Python-3.5.2.eb index afcb159063..4603063586 100644 --- a/easybuild/easyconfigs/a/ASE/ASE-3.14.1-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2016b-Python-3.5.2.eb @@ -1,7 +1,7 @@ easyblock = 'PythonPackage' name = 'ASE' -version = '3.14.1' +version = '3.15.0' versionsuffix = '-Python-%(pyver)s' homepage = 'http://wiki.fysik.dtu.dk/ase' @@ -12,7 +12,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] -checksums = ['e65862336cf2633b7dfe03e9bddd9bd24e0fb88fa767b059ab6b6aeb35e94af2'] +checksums = ['5e22d961b1311ef4ba2d83527f7cc7448abac8cf9bddd1593bee548459263fe8'] dependencies = [ ('Python', '3.5.2'), -- GitLab From 5b2ff90f722578a49c78d2e41944e9fc2bbe8c92 Mon Sep 17 00:00:00 2001 From: Andreas Hilboll Date: Fri, 6 Oct 2017 15:34:22 +0200 Subject: [PATCH 683/845] BUG: add missing libpng dependency to g2lib-1.4.0 for intel-2017a --- easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb | 3 ++- easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb b/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb index 91bbbfa89b..ab85d51b79 100644 --- a/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb +++ b/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb @@ -9,7 +9,8 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [homepage] sources = ['%(name)s-%(version)s.tar'] -dependencies = [('JasPer', '1.900.1')] +dependencies = [('JasPer', '1.900.1'), + ('libpng', '1.6.29'),] # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb b/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb index c7f92d0e2b..1f84fe8cf9 100644 --- a/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb +++ b/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb @@ -11,7 +11,8 @@ sources = ['%(name)s-%(version)s.tar'] patches = ['fix_makefile.patch'] -dependencies = [('JasPer', '1.900.1')] +dependencies = [('JasPer', '1.900.1'), + ('libpng', '1.6.29'),] buildopts = 'CFLAGS="$CFLAGS -DLINUXG95 -D__64BIT__" FFLAGS="$FFLAGS -fpp -I."' -- GitLab From d13cc0c3ae6f3936872e03a90adaeef2a7751830 Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 10 Oct 2017 12:36:25 +0200 Subject: [PATCH 684/845] Newest version of matplotlib with newest foss toolchain. --- ...etype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb | 34 ++++++++++++ ...atplotlib-2.1.0-foss-2017b-Python-3.6.2.eb | 52 +++++++++++++++++++ 2 files changed, 86 insertions(+) create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb new file mode 100644 index 0000000000..3e19734fe3 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb @@ -0,0 +1,34 @@ +name = 'freetype' +version = '2.7.1' +libpng_ver = '1.6.32' +versionsuffix = '-libpng-%s' % libpng_ver + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['162ef25aa64480b1189cdb261228e6c5c44f212aac4b4621e28cf2157efb59f5'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libpng', libpng_ver), + ('zlib', '1.2.11'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.28', '', True)] + +configopts = '--with-harfbuzz=no' + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb new file mode 100644 index 0000000000..e7630fcf28 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb @@ -0,0 +1,52 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.1.0' +versionsuffix = '-Python-%(pyver)s' + +libpng_ver = '1.6.32' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2017b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '3.6.2'), + ('libpng', libpng_ver), + ('freetype', '2.7.1', '-libpng-%s' % libpng_ver, ('GCCcore', '6.4.0')), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_tmpl': 'cycler-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'checksums': [ + 'cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8', # cycler-0.10.0.tar.gz + ], + }), + ('matplotlib', '2.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + 'checksums': [ + '4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387', # matplotlib-2.1.0.tar.gz + ], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' -- GitLab From a0ef0df203ad1dca18fa2f0ee4b1ec5245b3a8c3 Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 10 Oct 2017 13:09:59 +0200 Subject: [PATCH 685/845] Atomic Simulation Environment (ASE) with newest Python and foss toolchain. --- .../ASE/ASE-3.15.0-foss-2017b-Python-3.6.2.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2017b-Python-3.6.2.eb diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2017b-Python-3.6.2.eb new file mode 100644 index 0000000000..86d044afa1 --- /dev/null +++ b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-foss-2017b-Python-3.6.2.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'ASE' +version = '3.15.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://wiki.fysik.dtu.dk/ase' +description = """ASE is a python package providing an open source Atomic Simulation Environment + in the Python scripting language.""" + +toolchain = {'name': 'foss', 'version': '2017b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['5e22d961b1311ef4ba2d83527f7cc7448abac8cf9bddd1593bee548459263fe8'] + +dependencies = [ + ('Python', '3.6.2'), + ('matplotlib', '2.1.0', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': ['bin/ase'], + 'dirs': [], +} + +moduleclass = 'chem' -- GitLab From 86a91da43747154cb17a859854d6a1346ec5b662 Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 10 Oct 2017 13:27:57 +0200 Subject: [PATCH 686/845] Code improved after review by @boegel, freetype dependency updated. --- ...etype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb | 34 ------------------- ...atplotlib-2.1.0-foss-2017b-Python-3.6.2.eb | 8 ++--- 2 files changed, 3 insertions(+), 39 deletions(-) delete mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb deleted file mode 100644 index 3e19734fe3..0000000000 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.4.0-libpng-1.6.32.eb +++ /dev/null @@ -1,34 +0,0 @@ -name = 'freetype' -version = '2.7.1' -libpng_ver = '1.6.32' -versionsuffix = '-libpng-%s' % libpng_ver - -homepage = 'http://freetype.org' -description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and - portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display - servers, font conversion tools, text image generation tools, and many other products as well.""" - -toolchain = {'name': 'GCCcore', 'version': '6.4.0'} - -source_urls = [GNU_SAVANNAH_SOURCE] -sources = [SOURCE_TAR_GZ] -checksums = ['162ef25aa64480b1189cdb261228e6c5c44f212aac4b4621e28cf2157efb59f5'] - -dependencies = [ - ('bzip2', '1.0.6'), - ('libpng', libpng_ver), - ('zlib', '1.2.11'), -] - -# use same binutils version that was used when building GCCcore toolchain -builddependencies = [('binutils', '2.28', '', True)] - -configopts = '--with-harfbuzz=no' - -sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, - 'lib/pkgconfig/freetype2.pc'], - 'dirs': ['include/freetype2'], -} - -moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb index e7630fcf28..a80b00de03 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-foss-2017b-Python-3.6.2.eb @@ -4,8 +4,6 @@ name = 'matplotlib' version = '2.1.0' versionsuffix = '-Python-%(pyver)s' -libpng_ver = '1.6.32' - homepage = 'http://matplotlib.org' description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python @@ -18,8 +16,8 @@ exts_defaultclass = 'PythonPackage' dependencies = [ ('Python', '3.6.2'), - ('libpng', libpng_ver), - ('freetype', '2.7.1', '-libpng-%s' % libpng_ver, ('GCCcore', '6.4.0')), + ('libpng', '1.6.32'), + ('freetype', '2.8'), ] exts_list = [ @@ -31,7 +29,7 @@ exts_list = [ 'cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8', # cycler-0.10.0.tar.gz ], }), - ('matplotlib', '2.1.0', { + (name, version, { 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], 'checksums': [ '4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387', # matplotlib-2.1.0.tar.gz -- GitLab From c9b7e132ea7c2243aed0d2ac3ec1a1ce32d7fcfc Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 10 Oct 2017 15:04:26 +0200 Subject: [PATCH 687/845] ASAP is a massively parallel molecular dynamics simulator for ASE. --- .../ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb | 33 +++++++++++++++++ .../ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb | 33 +++++++++++++++++ .../ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb | 35 +++++++++++++++++++ 3 files changed, 101 insertions(+) create mode 100644 easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb create mode 100644 easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb create mode 100644 easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb diff --git a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb new file mode 100644 index 0000000000..e8c739b33d --- /dev/null +++ b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,33 @@ +easyblock = "PythonPackage" + +name = 'ASAP3' +version = '3.10.7' + +homepage = 'https://wiki.fysik.dtu.dk/asap/' +description = """ASAP is a calculator for doing large-scale classical molecular +dynamics within the Campos Atomic Simulation Environment (ASE).""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773'] + +python = 'Python' +pythonver = '3.5.2' +versionsuffix = '-%s-%s' % (python, pythonver) + +ase = 'ASE' +asever = '3.15.0' + +dependencies = [ + (python, pythonver), + (ase, asever, versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'] +} + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb new file mode 100644 index 0000000000..ac276dc01b --- /dev/null +++ b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb @@ -0,0 +1,33 @@ +easyblock = "PythonPackage" + +name = 'ASAP3' +version = '3.10.7' + +homepage = 'https://wiki.fysik.dtu.dk/asap/' +description = """ASAP is a calculator for doing large-scale classical molecular +dynamics within the Campos Atomic Simulation Environment (ASE).""" + +toolchain = {'name': 'foss', 'version': '2017b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773'] + +python = 'Python' +pythonver = '3.6.2' +versionsuffix = '-%s-%s' % (python, pythonver) + +ase = 'ASE' +asever = '3.15.0' + +dependencies = [ + (python, pythonver), + (ase, asever, versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'] +} + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb new file mode 100644 index 0000000000..6371960c3c --- /dev/null +++ b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'ASAP3' +version = '3.10.7' + +homepage = 'https://wiki.fysik.dtu.dk/asap/' +description = """ASAP is a calculator for doing large-scale classical molecular +dynamics within the Campos Atomic Simulation Environment (ASE).""" + +toolchain = {'name': 'iomkl', 'version': '2017b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773'] + +python = 'Python' +pythonver = '3.6.2' +versionsuffix = '-%s-%s' % (python, pythonver) + +installopts = buildopts = '--with-intel --clear-compiler-environment' + +ase = 'ASE' +asever = '3.15.0' + +dependencies = [ + (python, pythonver, '', ('foss', '2017b')), + (ase, asever, versionsuffix, ('foss', '2017b')), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'] +} + +moduleclass = 'phys' -- GitLab From 11421fb8e0050412ffa00fb4dcc4e1e78ce750ed Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 10 Oct 2017 15:15:25 +0200 Subject: [PATCH 688/845] adding easyconfigs: grib_api-1.24.0-intel-2017a.eb --- .../g/grib_api/grib_api-1.24.0-intel-2017a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-intel-2017a.eb diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-intel-2017a.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-intel-2017a.eb new file mode 100644 index 0000000000..d630ddb9a4 --- /dev/null +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'grib_api' +version = '1.24.0' + +homepage = 'https://software.ecmwf.int/wiki/display/GRIB/Home' +description = """The ECMWF GRIB API is an application program interface accessible from C, FORTRAN and Python + programs developed for encoding and decoding WMO FM-92 GRIB edition 1 and edition 2 messages. A useful set of + command line tools is also provided to give quick access to GRIB messages.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://software.ecmwf.int/wiki/download/attachments/3473437/'] +sources = ['grib_api-%(version)s-Source.tar.gz'] +checksums = ['6b0d443cb0802c5de652e5816c5b88734cb3ead454eb932c5ec12ef8d4f77bcd'] + +dependencies = [ + ('JasPer', '1.900.1'), # 2.x doesn't work +] + +configopts = '--with-jasper=$EBROOTJASPER' + +parallel = 1 + +moduleclass = 'data' -- GitLab From 11394c958cc958b5e5c6dd91e9a75ee924fadc5f Mon Sep 17 00:00:00 2001 From: Jakob Schiotz Date: Tue, 10 Oct 2017 15:35:55 +0200 Subject: [PATCH 689/845] Style fixed. Verion with iomkl toolchain abandoned for now. --- .../ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb | 12 ++----- .../ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb | 12 ++----- .../ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb | 35 ------------------- 3 files changed, 6 insertions(+), 53 deletions(-) delete mode 100644 easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb diff --git a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb index e8c739b33d..4d53be1a69 100644 --- a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2016b-Python-3.5.2.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'ASAP3' version = '3.10.7' +versionsuffix = '-Python-%(pyver)s' homepage = 'https://wiki.fysik.dtu.dk/asap/' description = """ASAP is a calculator for doing large-scale classical molecular @@ -13,16 +14,9 @@ source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] checksums = ['20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773'] -python = 'Python' -pythonver = '3.5.2' -versionsuffix = '-%s-%s' % (python, pythonver) - -ase = 'ASE' -asever = '3.15.0' - dependencies = [ - (python, pythonver), - (ase, asever, versionsuffix), + ('Python', '3.5.2'), + ('ASE', '3.15.0', versionsuffix), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb index ac276dc01b..786af6d629 100644 --- a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb +++ b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-foss-2017b-Python-3.6.2.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'ASAP3' version = '3.10.7' +versionsuffix = '-Python-%(pyver)s' homepage = 'https://wiki.fysik.dtu.dk/asap/' description = """ASAP is a calculator for doing large-scale classical molecular @@ -13,16 +14,9 @@ source_urls = [PYPI_LOWER_SOURCE] sources = [SOURCELOWER_TAR_GZ] checksums = ['20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773'] -python = 'Python' -pythonver = '3.6.2' -versionsuffix = '-%s-%s' % (python, pythonver) - -ase = 'ASE' -asever = '3.15.0' - dependencies = [ - (python, pythonver), - (ase, asever, versionsuffix), + ('Python', '3.6.2'), + ('ASE', '3.15.0', versionsuffix), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb b/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb deleted file mode 100644 index 6371960c3c..0000000000 --- a/easybuild/easyconfigs/a/ASAP3/ASAP3-3.10.7-iomkl-2017b-Python-3.6.2.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = "PythonPackage" - -name = 'ASAP3' -version = '3.10.7' - -homepage = 'https://wiki.fysik.dtu.dk/asap/' -description = """ASAP is a calculator for doing large-scale classical molecular -dynamics within the Campos Atomic Simulation Environment (ASE).""" - -toolchain = {'name': 'iomkl', 'version': '2017b'} - -source_urls = [PYPI_LOWER_SOURCE] -sources = [SOURCELOWER_TAR_GZ] -checksums = ['20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773'] - -python = 'Python' -pythonver = '3.6.2' -versionsuffix = '-%s-%s' % (python, pythonver) - -installopts = buildopts = '--with-intel --clear-compiler-environment' - -ase = 'ASE' -asever = '3.15.0' - -dependencies = [ - (python, pythonver, '', ('foss', '2017b')), - (ase, asever, versionsuffix, ('foss', '2017b')), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'] -} - -moduleclass = 'phys' -- GitLab From ed32b55a23bfc7cf263359e5b66515880b2cb15d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 08:59:48 +0200 Subject: [PATCH 690/845] add dummy icc/ifort/mpiicc commands to allow tests for {icc,ifort,impi}-system.eb easyconfigs to pass --- .travis.yml | 1 + test/bin/composer_xe_2015.3.187/bin/intel64/icc | 1 + test/bin/composer_xe_2015.3.187/bin/intel64/ifort | 1 + test/bin/icc | 1 + test/bin/ifort | 1 + test/bin/mpiicc | 3 +++ 6 files changed, 8 insertions(+) create mode 100755 test/bin/composer_xe_2015.3.187/bin/intel64/icc create mode 100755 test/bin/composer_xe_2015.3.187/bin/intel64/ifort create mode 120000 test/bin/icc create mode 120000 test/bin/ifort create mode 100755 test/bin/mpiicc diff --git a/.travis.yml b/.travis.yml index cab5b8a8be..76b71bfc19 100644 --- a/.travis.yml +++ b/.travis.yml @@ -48,4 +48,5 @@ before_script: script: - cd $HOME - export PYTHONPATH=$TRAVIS_BUILD_DIR + - export PATH=$TRAVIS_BUILD_DIR/test/bin:$PATH - python -O -m test.easyconfigs.suite diff --git a/test/bin/composer_xe_2015.3.187/bin/intel64/icc b/test/bin/composer_xe_2015.3.187/bin/intel64/icc new file mode 100755 index 0000000000..a9bf588e2f --- /dev/null +++ b/test/bin/composer_xe_2015.3.187/bin/intel64/icc @@ -0,0 +1 @@ +#!/bin/bash diff --git a/test/bin/composer_xe_2015.3.187/bin/intel64/ifort b/test/bin/composer_xe_2015.3.187/bin/intel64/ifort new file mode 100755 index 0000000000..a9bf588e2f --- /dev/null +++ b/test/bin/composer_xe_2015.3.187/bin/intel64/ifort @@ -0,0 +1 @@ +#!/bin/bash diff --git a/test/bin/icc b/test/bin/icc new file mode 120000 index 0000000000..de63691b9b --- /dev/null +++ b/test/bin/icc @@ -0,0 +1 @@ +composer_xe_2015.3.187/bin/intel64/icc \ No newline at end of file diff --git a/test/bin/ifort b/test/bin/ifort new file mode 120000 index 0000000000..cf23004a15 --- /dev/null +++ b/test/bin/ifort @@ -0,0 +1 @@ +composer_xe_2015.3.187/bin/intel64/ifort \ No newline at end of file diff --git a/test/bin/mpiicc b/test/bin/mpiicc new file mode 100755 index 0000000000..70170a9bc6 --- /dev/null +++ b/test/bin/mpiicc @@ -0,0 +1,3 @@ +#!/bin/bash +#compilers_and_libraries_5.1.3.181/linux/mpiicc +echo "icc $@" -- GitLab From 8e0208df0dcf804765985d2ef6e04494ad88a7a6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 08:59:56 +0200 Subject: [PATCH 691/845] hpcugent -> easybuilders --- easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb index 9a8f12df98..78b16dd345 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-system.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr -- GitLab From 5a457bedb548da1cfc24d20dbb4d08a31cd3d985 Mon Sep 17 00:00:00 2001 From: Andreas Hilboll Date: Wed, 11 Oct 2017 11:26:36 +0200 Subject: [PATCH 692/845] STY: fix style of dependency specification --- easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb | 6 ++++-- easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb | 6 ++++-- 2 files changed, 8 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb b/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb index ab85d51b79..d66517f547 100644 --- a/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb +++ b/easybuild/easyconfigs/g/g2clib/g2clib-1.6.0-intel-2017a.eb @@ -9,8 +9,10 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = [homepage] sources = ['%(name)s-%(version)s.tar'] -dependencies = [('JasPer', '1.900.1'), - ('libpng', '1.6.29'),] +dependencies = [ + ('JasPer', '1.900.1'), + ('libpng', '1.6.29'), +] # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb b/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb index 1f84fe8cf9..0947c51ce8 100644 --- a/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb +++ b/easybuild/easyconfigs/g/g2lib/g2lib-1.4.0-intel-2017a.eb @@ -11,8 +11,10 @@ sources = ['%(name)s-%(version)s.tar'] patches = ['fix_makefile.patch'] -dependencies = [('JasPer', '1.900.1'), - ('libpng', '1.6.29'),] +dependencies = [ + ('JasPer', '1.900.1'), + ('libpng', '1.6.29'), +] buildopts = 'CFLAGS="$CFLAGS -DLINUXG95 -D__64BIT__" FFLAGS="$FFLAGS -fpp -I."' -- GitLab From a7154c7c13e2fe9a3b8d361857378b9ec1dac48a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 15:36:40 +0200 Subject: [PATCH 693/845] adding easyconfigs: OpenMPI-2.1.2-GCC-6.4.0-2.28.eb, hwloc-1.11.8-GCCcore-6.4.0.eb --- .../h/hwloc/hwloc-1.11.8-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ .../o/OpenMPI/OpenMPI-2.1.2-GCC-6.4.0-2.28.eb | 36 ++++++++++++++++ 2 files changed, 77 insertions(+) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-GCC-6.4.0-2.28.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f3a777bad9 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.8-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.8' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' + +description = """ + The Portable Hardware Locality (hwloc) software package provides a portable + abstraction (across OS, versions, architectures, ...) of the hierarchical + topology of modern architectures, including NUMA memory nodes, sockets, shared + caches, cores and simultaneous multithreading. It also gathers various system + attributes such as cache and memory information as well as the locality of I/O + devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily + aims at helping applications with gathering information about modern computing + hardware so as to exploit it accordingly and efficiently. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] +checksums = ['8af89b1164a330e36d18210360ea9bb305e19f9773d1c882855d261a13054ea8'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('numactl', '2.0.11'), +] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +sanity_check_paths = { + 'files': ['bin/lstopo', 'include/hwloc/linux.h', 'sbin/hwloc-dump-hwdata', + 'lib/libhwloc.%s' % SHLIB_EXT], + 'dirs': ['share/man/man3'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..8c86be8f23 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-GCC-6.4.0-2.28.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '2.1.2' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '6.4.0-2.28'} + +source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e5bf7b2d7517f5cb7c9e1fed15d2df2da501669072477b21a513e892a22663bc'] + +dependencies = [('hwloc', '1.11.8')] + +configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# to enable SLURM integration (site-specific) +# configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr' + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] + +libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': [], +} + +moduleclass = 'mpi' -- GitLab From fca28115bd08f48a16d0180c6d5b54f25f34d396 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 15:44:27 +0200 Subject: [PATCH 694/845] install Open MPI in test environment --- .travis.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.travis.yml b/.travis.yml index 76b71bfc19..e37a4ce6ea 100644 --- a/.travis.yml +++ b/.travis.yml @@ -20,6 +20,9 @@ addons: apt: packages: - tcl8.5 + # for testing OpenMPI-system*eb we need to have Open MPI installed + - libopenmpi-dev + - openmpi-bin install: # pydot (dep for python-graph-dot) 1.2.0 and more recent doesn't work with Python 2.6 - if [ "x$TRAVIS_PYTHON_VERSION" == 'x2.6' ]; then pip install pydot==1.1.0; else pip install pydot; fi -- GitLab From 7ce740bba8b8fd74b666abbab1efe1e3610dc376 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 16:02:09 +0200 Subject: [PATCH 695/845] adding easyconfigs: GCC-5.5.0-2.26.eb, GCCcore-5.5.0.eb --- easybuild/easyconfigs/g/GCC/GCC-5.5.0-2.26.eb | 25 ++++++++++ .../easyconfigs/g/GCCcore/GCCcore-5.5.0.eb | 49 +++++++++++++++++++ 2 files changed, 74 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCC/GCC-5.5.0-2.26.eb create mode 100644 easybuild/easyconfigs/g/GCCcore/GCCcore-5.5.0.eb diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.5.0-2.26.eb b/easybuild/easyconfigs/g/GCC/GCC-5.5.0-2.26.eb new file mode 100644 index 0000000000..c6a6ea3541 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-5.5.0-2.26.eb @@ -0,0 +1,25 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = '5.5.0' + +binutilsver = '2.26' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore, which was built on top of (dummy-built) binutils + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-5.5.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-5.5.0.eb new file mode 100644 index 0000000000..ed290d2992 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-5.5.0.eb @@ -0,0 +1,49 @@ +easyblock = 'EB_GCC' + +name = 'GCCcore' +version = '5.5.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.6' + +source_urls = [ + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies + 'http://isl.gforge.inria.fr/', # original HTTP source for ISL +] + +sources = [ + 'gcc-%(version)s.tar.gz', + 'gmp-6.1.2.tar.bz2', + 'mpfr-3.1.6.tar.gz', + 'mpc-1.0.3.tar.gz', + 'isl-0.15.tar.bz2', +] + +builddependencies = [ + ('binutils', '2.26'), + ('M4', '1.4.17'), +] + +checksums = [ + '3aabce75d6dd206876eced17504b28d47a724c2e430dbd2de176beb948708983', # gcc-5.5.0.tar.gz + '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 + '569ceb418aa935317a79e93b87eeb3f956cab1a97dfb2f3b5fd8ac2501011d62', # mpfr-3.1.6.tar.gz + '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz + '8ceebbf4d9a81afa2b4449113cee4b7cb14a687d7a549a963deb5e2a41458b6b', # isl-0.15.tar.bz2 +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +moduleclass = 'compiler' -- GitLab From 930b7849f07dd35fff1f1cda9cf3a153790d1dd9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 16:26:54 +0200 Subject: [PATCH 696/845] OpenMPI 3.0.0 supports MPI-3 --- easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb index 692ddc30e2..a7039c87be 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-3.0.0-GCC-7.2.0-2.29.eb @@ -4,7 +4,7 @@ name = 'OpenMPI' version = '3.0.0' homepage = 'http://www.open-mpi.org/' -description = """The Open MPI Project is an open source MPI-2 implementation.""" +description = """The Open MPI Project is an open source MPI-3 implementation.""" toolchain = {'name': 'GCC', 'version': '7.2.0-2.29'} -- GitLab From 8e3f93f9f43670712cd274c33256b7388c8e0abb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 11 Oct 2017 16:48:41 +0200 Subject: [PATCH 697/845] add missing binutils dep for GCC/5.5.0-2.26 --- .../b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb | 27 +++++++++++++++++ .../b/binutils/binutils-2.26-GCCcore-5.5.0.eb | 21 +++++++++++++ .../f/flex/flex-2.6.4-GCCcore-5.5.0.eb | 30 +++++++++++++++++++ .../help2man/help2man-1.47.5-GCCcore-5.5.0.eb | 24 +++++++++++++++ .../m/M4/M4-1.4.18-GCCcore-5.5.0.eb | 28 +++++++++++++++++ .../z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb | 25 ++++++++++++++++ 6 files changed, 155 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-5.5.0.eb create mode 100644 easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb new file mode 100644 index 0000000000..a401172e79 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCCcore', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [ + ('M4', '1.4.18'), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.26', '', True), +] + + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb new file mode 100644 index 0000000000..0b24c95d88 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb @@ -0,0 +1,21 @@ +name = 'binutils' +version = '2.26' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': '5.5.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked instatically, so not a runtime dep + ('zlib', '1.2.11'), + # use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils + ('binutils', version, '', True) +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-5.5.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-5.5.0.eb new file mode 100644 index 0000000000..60a66d1c08 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-5.5.0.eb @@ -0,0 +1,30 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'GCCcore', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.5'), + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.26', '', True), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb new file mode 100644 index 0000000000..4ca51bbdfe --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.5' + +homepage = 'https://www.gnu.org/software/help2man/' +description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +toolchain = {'name': 'GCCcore', 'version': '5.5.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] + +builddependencies = [ + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.26', '', True), +] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb new file mode 100644 index 0000000000..3eb464731d --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.26', '', True)] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb new file mode 100644 index 0000000000..69a4b09fce --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCCcore', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://zlib.net/fossils'] +sources = [SOURCELOWER_TAR_GZ] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 3a79f2bf70261d92c37df03b39d8e3a4429443de Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 08:57:59 +0200 Subject: [PATCH 698/845] fix source_urls for Szip 2.1 & include SHA256 checksum --- easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016b.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2.11.5.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.16.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-goolfc-2016.10.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016.02-GCC-4.9.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016b.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017.01.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017a.eb | 3 ++- easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.07.eb | 3 ++- .../s/Szip/Szip-2.1-iomkl-2016.09-GCC-4.9.3-2.25.eb | 3 ++- 32 files changed, 64 insertions(+), 32 deletions(-) diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06.eb index 01689413cc..53ab24482e 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'CrayGNU', 'version': '2015.06'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11.eb index 2c00792f81..c635ba6729 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'CrayGNU', 'version': '2015.11'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb index 4356912900..72691d497a 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'GCC', 'version': '4.8.1'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb index 51caf7745b..d42e2e9338 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'GCCcore', 'version': '5.4.0'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb index d4cbdb38bb..8336d5a802 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'foss', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb index 8ee9a367a6..350f8410c0 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb index ecef46c63a..c89d7a1e75 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'foss', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016a.eb index 747addc8df..6e2cc89914 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016b.eb index 93decc8ff1..6b552db228 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2016b.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb index 7be82daa90..1d72326f3a 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2.11.5.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2.11.5.eb index bf50049e0f..7e68b74d7a 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2.11.5.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'gimkl', 'version': '2.11.5'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb index be905d9536..fc76d4f5da 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'gimkl', 'version': '2017a'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb index fa8030d775..62358637ff 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb index af86122037..ab0a659fe0 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.16.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.16.eb index 73e27f5f6c..60d41b3315 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.16.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'goolf', 'version': '1.5.16'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolfc-2016.10.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolfc-2016.10.eb index c2c5a38e56..56265f0cfd 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolfc-2016.10.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolfc-2016.10.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'goolfc', 'version': '2016.10'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb index 57102b24eb..08aad20798 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'ictce', 'version': '5.2.0'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb index 9fb50c3aaa..fb38fd73d1 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb index 6e85cddcb4..00b809e8da 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb index 874483a81c..0ba406f3db 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb index dd9bbe69e8..f3ab329c94 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'ictce', 'version': '6.1.5'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb index 7ab0bfa52d..ee02501b4a 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb index f873b71036..18d2f62c87 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb index 0c94946cf2..5d312ba227 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb index fdf4660866..550f545d6b 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016.02-GCC-4.9.eb index d8f05c9dd2..0aef33ba7f 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016.02-GCC-4.9.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb index 67b0f10359..f9aeca7040 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016b.eb index 8317e70e0b..721301cf2a 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016b.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017.01.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017.01.eb index 73468933aa..b8d431470a 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017.01.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017.01.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2017.01'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017a.eb index 7a02acddee..adf89e2e68 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2017a.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.07.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.07.eb index 6f12c299b1..edc60dea0d 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.07.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'iomkl', 'version': '2016.07'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.09-GCC-4.9.3-2.25.eb index 30b6725636..0275392a9b 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -9,8 +9,9 @@ description = "Szip compression software, providing lossless compression of scie toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/lib-external/szip/previous/%(version)s/src/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['a816d95d5662e8279625abdbea7d0e62157d7d1f028020b1075500bf483ed5ef'] configopts = "--with-pic" -- GitLab From b2a7131a33f2a53aadf98e6b95770990baff9d22 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 10:03:07 +0200 Subject: [PATCH 699/845] remove unneeded --with-fft-incs configure option for ABINIT --- .../easyconfigs/a/ABINIT/ABINIT-7.10.4-intel-2015a-incl-deps.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.10.4-intel-2015a-incl-deps.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.10.4-intel-2015a-incl-deps.eb index a8aa421345..201187ddf5 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.10.4-intel-2015a-incl-deps.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.10.4-intel-2015a-incl-deps.eb @@ -20,7 +20,6 @@ configopts += "--with-dft-flavor='atompaw+bigdft+libxc+wannier90' " configopts += '--with-linalg-flavor=mkl --with-linalg-libs="-L$LAPACK_LIB_DIR $LIBLAPACK" ' configopts += '--enable-mpi=yes --with-mpi-level=2 --enable-mpi-io=yes ' configopts += '--with-fft-flavor=fftw3-mkl --with-fft-libs="-L$FFT_LIB_DIR $LIBFFT" ' -configopts += '--with-fft-incs=-I$FFT_INC_DIR/fftw ' configopts += '--enable-gw-dpc="yes" --enable-64bit-flags="yes" ' sanity_check_paths = { -- GitLab From 5d3bf7e324902ae35953994f72e27b6440cb9d69 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 10:12:45 +0200 Subject: [PATCH 700/845] adding easyconfigs: SAS-9.4.eb, libpng-1.2.58.eb --- .../easyconfigs/l/libpng/libpng-1.2.58.eb | 31 +++++++++++++++++++ easybuild/easyconfigs/s/SAS/SAS-9.4.eb | 16 ++++++++++ 2 files changed, 47 insertions(+) create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.2.58.eb create mode 100644 easybuild/easyconfigs/s/SAS/SAS-9.4.eb diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.2.58.eb b/easybuild/easyconfigs/l/libpng/libpng-1.2.58.eb new file mode 100644 index 0000000000..84633253cb --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.2.58.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.2.58' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' + +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['283f84b0d020589542716ba3c31c5fcf88fb7fd3082a5bbebfc320534c512e1f'] + +dependencies = [ + ('zlib', '1.2.11'), +] + +majminver = ''.join(version.split('.')[:2]) + +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', + 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/libpng%s.a' % majminver, + 'lib/libpng%s.%s' % (majminver, SHLIB_EXT), + 'lib/libpng%s.%s.0' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SAS/SAS-9.4.eb b/easybuild/easyconfigs/s/SAS/SAS-9.4.eb new file mode 100644 index 0000000000..fbdaafe6e6 --- /dev/null +++ b/easybuild/easyconfigs/s/SAS/SAS-9.4.eb @@ -0,0 +1,16 @@ +name = 'SAS' +version = '9.4' + +homepage = 'https://www.sas.com' +description = """SAS is a software suite for advanced analytics, multivariate analyses, business intelligence, + data management, and predictive analytics.""" + +toolchain = {'name': 'dummy', 'version': ''} + +# tarball needs to be created manually, by packing up the 'Linux64' directory +sources = [SOURCE_TAR_GZ] + +# old libpng is required for libpng12.so.0 +dependencies = [('libpng', '1.2.58')] + +moduleclass = 'math' -- GitLab From 89178a92dee5df8721bb8a16c86549a3146e7e0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 10:50:26 +0200 Subject: [PATCH 701/845] add missing checksums --- easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb | 3 ++- .../easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb | 3 ++- .../easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb | 1 + easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb | 3 ++- easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb | 1 + 5 files changed, 8 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb index a401172e79..86986bf3f4 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-5.5.0.eb @@ -9,8 +9,9 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'GCCcore', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] builddependencies = [ ('M4', '1.4.18'), diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb index 0b24c95d88..2d41305b4c 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.26-GCCcore-5.5.0.eb @@ -6,8 +6,9 @@ description = "binutils: GNU binary utilities" toolchain = {'name': 'GCCcore', 'version': '5.5.0'} -sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['9615feddaeedc214d1a1ecd77b6697449c952eab69d79ab2125ea050e944bcc1'] builddependencies = [ ('flex', '2.6.4'), diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb index 4ca51bbdfe..5456820773 100644 --- a/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.5-GCCcore-5.5.0.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'GCCcore', 'version': '5.5.0'} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_XZ] +checksums = ['7ca60b2519fdbe97f463fe2df66a6188d18b514bfd44127d985f0234ee2461b1'] builddependencies = [ # use same binutils version that was used when building GCC toolchain diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb index 3eb464731d..58ab0db4d7 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.5.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.26', '', True)] diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb index 69a4b09fce..bb5db1a26d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-5.5.0.eb @@ -13,6 +13,7 @@ toolchainopts = {'pic': True} source_urls = ['http://zlib.net/fossils'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.26', '', True)] -- GitLab From 0e7cabe37fb3894d6c30f01b3be547b8ecb8e88f Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 12 Oct 2017 12:00:11 +0200 Subject: [PATCH 702/845] corrected as requested --- .../easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb index 98f91ab77c..6678f69c89 100644 --- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb @@ -1,4 +1,5 @@ easyblock = 'CMakeMake' + name = 'IQ-TREE' version = '1.5.5' versionsuffix = "-mpi" @@ -7,19 +8,18 @@ homepage = 'http://www.iqtree.org/' description = """Efficient phylogenomic software by maximum likelihood""" toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'usempi': True} github_account = 'Cibiv' source_urls = [GITHUB_SOURCE] sources = ['v%(version)s.tar.gz'] - -configopts = '-DIQTREE_FLAGS="mpi omp" -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx' +checksums = ['1be05b8ca97b43815309352b78030540e8d5f44e4003552c406538415cd6fe19'] builddependencies = [('CMake', '3.5.2')] sanity_check_paths = { 'files': ["bin/iqtree-omp-mpi"], - 'dirs': ["bin"], } moduleclass = 'bio' -- GitLab From bd678bc50ea4f49b6b62cd0b702e7dba7beb31f8 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Thu, 12 Oct 2017 12:09:31 +0200 Subject: [PATCH 703/845] adding easyconfigs: DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb --- .../DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb diff --git a/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb new file mode 100644 index 0000000000..a7c719334a --- /dev/null +++ b/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = "PythonPackage" + +name = 'DLCpar' +version = '1.0' +versionsuffix = "-Python-%(pyver)s" + +homepage = 'https://www.cs.hmc.edu/~yjw/software/dlcpar/' +description = """DLCpar is a reconciliation method for inferring gene duplications, losses, + and coalescence (accounting for incomplete lineage sorting)""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['https://www.cs.hmc.edu/~yjw/software/dlcpar/pub/sw/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '2.7.11') # dependency numpy-1.10.4 is provided by the Python module +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['dlcoal_to_dlcpar', 'dlcpar', 'dlcpar_search', 'dlcpar_to_dlcoal', + 'tree-events-dlc', 'tree-events-dlcpar']], + 'dirs': ['lib/python%(pyshortver)s/site-packages/dlcpar'] +} + +moduleclass = 'bio' -- GitLab From c090f3c5a7ff5f7ebc0e092df3277f9920fe7d16 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 12:36:43 +0200 Subject: [PATCH 704/845] fix sanity check for older XML-Parser --- .../x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb index 557c52cebf..35068259c4 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44-foss-2015a-Perl-5.22.0.eb @@ -22,7 +22,7 @@ options = {'modulename': 'XML::Parser'} sanity_check_paths = { 'files': [], - 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux/XML'], } moduleclass = 'data' -- GitLab From 29cc2678cf31305ef804e918904ae88c0e870c16 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 12 Oct 2017 14:02:32 +0200 Subject: [PATCH 705/845] config flag and rename eb --- ...foss-2016a-mpi.eb => IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb} | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/i/IQ-TREE/{IQ-TREE-1.5.5-foss-2016a-mpi.eb => IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb} (86%) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb similarity index 86% rename from easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb rename to easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb index 6678f69c89..21c42231c1 100644 --- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-mpi.eb +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb @@ -2,7 +2,7 @@ easyblock = 'CMakeMake' name = 'IQ-TREE' version = '1.5.5' -versionsuffix = "-mpi" +versionsuffix = "-omp-mpi" homepage = 'http://www.iqtree.org/' description = """Efficient phylogenomic software by maximum likelihood""" @@ -16,10 +16,13 @@ source_urls = [GITHUB_SOURCE] sources = ['v%(version)s.tar.gz'] checksums = ['1be05b8ca97b43815309352b78030540e8d5f44e4003552c406538415cd6fe19'] +configopts = '-DIQTREE_FLAGS="omp mpi"' + builddependencies = [('CMake', '3.5.2')] sanity_check_paths = { 'files': ["bin/iqtree-omp-mpi"], + 'dirs': [], } moduleclass = 'bio' -- GitLab From f945affaedd732376cf8d1303eed0d225bdd2e65 Mon Sep 17 00:00:00 2001 From: Yann Sagon Date: Thu, 12 Oct 2017 16:32:17 +0200 Subject: [PATCH 706/845] use optarch false --- .../easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb index 21c42231c1..ae70860070 100644 --- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb +++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-1.5.5-foss-2016a-omp-mpi.eb @@ -8,7 +8,7 @@ homepage = 'http://www.iqtree.org/' description = """Efficient phylogenomic software by maximum likelihood""" toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': True} +toolchainopts = {'usempi': True, 'openmp': True, 'optarch': False} github_account = 'Cibiv' -- GitLab From 38c0f76fe2e5c5024983e30bff77b79692b1ab95 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 16:36:51 +0200 Subject: [PATCH 707/845] {lang,lib}[GCCcore/6.4.0] libmatheval v1.1.11, Guile v1.8.8 --- .../g/Guile/Guile-1.8.8-GCCcore-6.4.0.eb | 36 +++++++++++++++++ .../libmatheval-1.1.11-GCCcore-6.4.0.eb | 40 +++++++++++++++++++ ...libmatheval-1.1.11_fix-matheval-test.patch | 32 +++++++++++++++ 3 files changed, 108 insertions(+) create mode 100644 easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11_fix-matheval-test.patch diff --git a/easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..7898a965d4 --- /dev/null +++ b/easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'Guile' +version = '1.8.8' + +homepage = 'https://www.gnu.org/software/guile/' +description = """Guile is a programming language, designed to help programmers create flexible applications that + can be extended by users or other programmers with plug-ins, modules, or scripts.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3471fed2e72e5b04ad133bbaaf16369e8360283679bcf19800bc1b381024050'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), +] +dependencies = [ + ('libunistring', '0.9.7'), + ('libffi', '3.2.1'), + ('gc', '7.6.0'), + ('GMP', '6.1.2'), +] + +configopts = 'CFLAGS="$CFLAGS -Wno-unused-but-set-variable -Wno-misleading-indentation"' + +sanity_check_paths = { + 'files': ['bin/guile', 'bin/guile-config', 'bin/guile-snarf', 'bin/guile-tools', + 'include/libguile.h', 'lib/libguile.a', 'lib/libguile.%s' % SHLIB_EXT, + 'lib/pkgconfig/guile-%(version_major_minor)s.pc'], + 'dirs': ['include/guile'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..2a3aed6adc --- /dev/null +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'libmatheval' +version = '1.1.11' + +homepage = 'http://www.gnu.org/software/libmatheval/' +description = """GNU libmatheval is a library (callable from C and Fortran) to parse + and evaluate symbolic expressions input as text.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +patches = ['libmatheval-%(version)s_fix-matheval-test.patch'] +checksums = [ + '474852d6715ddc3b6969e28de5e1a5fbaff9e8ece6aebb9dc1cc63e9e88e89ab', # libmatheval-1.1.11.tar.gz + '2888ee1ba32bb864b655e53e13b06eafc23b598faed80b90585d41c98e2ae073', # libmatheval-1.1.11_fix-matheval-test.patch +] + +builddependencies = [ + ('binutils', '2.28'), +] +dependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + ('Guile', '1.8.8'), +] + +configopts = '--with-pic ' + +# fix for guile-config being broken because shebang line contains full path to bin/guile +configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' + +sanity_check_paths = { + 'files': ['lib/libmatheval.a', 'include/matheval.h'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11_fix-matheval-test.patch b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11_fix-matheval-test.patch new file mode 100644 index 0000000000..25bb0b17c8 --- /dev/null +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11_fix-matheval-test.patch @@ -0,0 +1,32 @@ +fix for "matheval.c:37:2: error: #error Neither scm_num2dbl() nor SCM_NUM2DBL available" +patch obtained via https://aur.archlinux.org/cgit/aur.git/tree/removeifndefs.patch?h=libmatheval +diff -aur a/tests/matheval.c b/tests/matheval.c +--- a/tests/matheval.c 2016-03-24 13:55:00.163074189 +0000 ++++ b/tests/matheval.c 2016-03-24 13:52:59.492996682 +0000 +@@ -26,26 +26,6 @@ + #include + #include "config.h" + +-#ifndef HAVE_SCM_T_BITS +-typedef long scm_t_bits; +-#endif +- +-#ifndef HAVE_SCM_NUM2DBL +-#ifdef SCM_NUM2DBL +-#define scm_num2dbl(x,s) SCM_NUM2DBL(x) +-#else +-#error Neither scm_num2dbl() nor SCM_NUM2DBL available +-#endif +-#endif +- +-#ifndef HAVE_SCM_C_DEFINE_GSUBR +-#ifdef HAVE_SCM_MAKE_GSUBR +-#define scm_c_define_gsubr scm_make_gsubr +-#else +-#error Neither scm_c_define_gsubr() nor scm_make_gsubr() available +-#endif +-#endif +- + static scm_t_bits evaluator_tag; /* Unique identifier for Guile + * objects of evaluator type. */ + -- GitLab From c6af45e0680ce6977c5998c05cbbc77fe050e94f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Oct 2017 17:08:52 +0200 Subject: [PATCH 708/845] add SHA256 checksum, fix comment --- .../d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb index a7c719334a..06adc4b64c 100644 --- a/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb @@ -17,9 +17,10 @@ toolchain = {'name': 'goolf', 'version': '1.7.20'} source_urls = ['https://www.cs.hmc.edu/~yjw/software/dlcpar/pub/sw/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['774319caba0f10d1230b8f85b8a147eda5871f9a316d7b3381b91c1bde97aa0a'] dependencies = [ - ('Python', '2.7.11') # dependency numpy-1.10.4 is provided by the Python module + ('Python', '2.7.11'), # also provides numpy ] sanity_check_paths = { -- GitLab From 8a1aa7a7006f951f50179cbeafa64ce3baffaef3 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 12 Oct 2017 17:42:21 +0200 Subject: [PATCH 709/845] specify that numpy must be 1.10.4 or higher --- .../d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb index 06adc4b64c..05ced0f62b 100644 --- a/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/d/DLCpar/DLCpar-1.0-goolf-1.7.20-Python-2.7.11.eb @@ -20,7 +20,7 @@ sources = [SOURCELOWER_TAR_GZ] checksums = ['774319caba0f10d1230b8f85b8a147eda5871f9a316d7b3381b91c1bde97aa0a'] dependencies = [ - ('Python', '2.7.11'), # also provides numpy + ('Python', '2.7.11'), # also provides numpy >= 1.10.4 ] sanity_check_paths = { -- GitLab From fd7127a0a75de01f0bc7dd4191e5290a33043a8d Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Fri, 13 Oct 2017 16:41:09 +0800 Subject: [PATCH 710/845] prepare release notes for eb341 --- RELEASE_NOTES | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 898568a4e3..d6488fae95 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,6 +6,36 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 7,566 easyconfig files, for 1,293 different software packages, 25 different (compiler) toolchains, 13 software bundles and 1 meta-package. +v3.4.1 (October 16th 2017) +-------------------------- + +bugfix/update release +- added easyconfigs for new toolchain giolf/2017b (#5140) +- added example easyconfig files for 11 new software packages: + - ASAP3 (#5200), Albacore (#5153), DLCpar (#5209), FSLeyes (#5192), IQ-TREE (#3695), NEST (#5515), + nanonet (#5149), oxford_asl (#5193), REMORA (#5159), SAS (#5208), supermagic (#5187) +- added additional easyconfigs for various supported software packages, including: + - 3to2 1.1.1, ASAP3 3.10.7, ASAP3 3.10.7, ASE 3.15.0, ASE 3.15.0, ASE 3.15.0, ATK 2.26.0, Albacore 2.0.2, Anaconda2 4.4.0.eb, Anaconda3 4.4.0.eb, BUSCO 1.22, Beast 2.4.7, Bison 2.7, Bison 3.0.4, Bison 3.0.4, Blender 2.79, Boost 1.61.0, Boost 1.64.0, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, beagle lib, binutils 2.26, binutils 2.29, CUDA 9.0.176.eb, Cantera 2.3.0, ccache 3.3.4, cuDNN 7.0.2, DBus 1.11.20, DLCpar 1.0, DMTCP 2.5.1.eb, dbus glib, EMBOSS 6.6.0, EasyBuild 3.4.0.eb, FFTW 3.3.6, FFmpeg 3.3.4, FSLeyes 0.15.0, flex 2.6.4, flex 2.6.4, fmt 3.0.2, GCC 5.5.0, GCC system, GCCcore 5.5.0.eb, GCCcore system.eb, GConf 3.2.6, GLM 0.9.7.6, GST plugins, GStreamer 0.10.36, GTK+ 2.24.31, Gdk Pixbuf, Guile 1.8.8, gimpi 2017b.eb, giolf 2017b.eb, git 2.14.1, gompi system, grib_api 1.24.0, gzip 1.8, HDF5 1.10.1, HDF5 1.10.1, HPL 2.2, HTSlib 1.4.1, HarfBuzz 1.5.1, h5py 2.7.1, h5py 2.7.1, help2man 1.47.4, help2man 1.47.5, hwloc 1.11.8, hwloc 1.11.8, IQ TREE, Infernal 1.1.2, icc system, iccifort system, ifort system, iimpi system, impi 2017.3.196, impi system, intltool 0.51.0, Keras 2.0.8, khmer 2.1.1, LAME 3.99.5, libmatheval 1.1.11, libpng 1.2.58.eb, libxml2 2.9.5, libxslt 1.1.30, libyaml 0.1.6, lxml 4.0.0, M4 1.4.18, M4 1.4.18, Mesquite 2.3.0, Mothur 1.39.5, matplotlib 2.1.0, mpi4py 2.0.0, mympingpong 0.8.0, NEST 2.12.0, NiBabel 2.1.0, nanonet 2.0.0, ncdf4 1.16, ncview 2.1.7, netCDF 4.4.1.1, netCDF 4.4.1.1, numpy 1.13.1, OpenCV 3.3.0, OpenCV 3.3.0, OpenEXR 2.2.0, OpenFOAM Extend, OpenImageIO 1.7.17, OpenMPI 2.1.2, OpenMPI 3.0.0, OpenMPI system, oxford_asl 3.9.6, Pango 1.40.12, ParMGridGen 1.0, Perl 5.26.0, PhyML 3.3.20170530, Pillow 4.2.1, Pillow 4.3.0, PyCUDA 2016.1.2, PyYAML 3.12, Python 2.7.14, Python 2.7.14, Python 3.6.2, Python 3.6.2, protobuf python, protobuf python, protobuf python, protobuf 3.3.0, protobuf 3.4.0, REMORA 1.8.2, REMORA 1.8.2, REMORA 1.8.2, SAS 9.4.eb, SCons 2.5.1, SUNDIALS 2.7.0, ScaLAPACK 2.0.2, scikit image, scikit learn, supermagic 20170824, Tensorflow 1.2.1, Tensorflow 1.3.0, Tensorflow 1.3.0, Valgrind 3.11.0, Valgrind 3.13.0, vsc mympirun, wxPython 3.0.2.0, XML Parser, x264 20170913, x265 2.5, zlib 1.2.11, zlib 1.2.11 +- minor enhancements, including: + - clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock (#5131) + - also consider rdma-core-devel as alternative to libibverbs-devel OS dependency (#5132) + - consistently use empty toolchain version in icc easyconfigs to ensure that GCC(core) dep is loaded during installation (#5133) + - consistently use empty toolchain version in ifort easyconfigs to ensure that GCC(core) dep is loaded during installation (#5134) + - also install run_rcorrector.pl with Rcorrector (#5135) + - add sha256 checksum to PyCUDA easyconfig (#5154) + - add missing Perl extensions in Worker/1.6.7 (#5157 + - fix/improve description in HDF5 easyconfigs (#5182) + - include heatmap3 extension for R 3.4.0 (#5185) + - add ComplexHeatmap to Bioconductor 3.5 bundle + dep pkgs in R 3.4.0 easyconfig (#5195) + - fix source_urls for Szip 2.1 & include SHA256 checksum (#5206) + - remove unneeded --with-fft-incs configure option for ABINIT (#5207) +- various bug fixes, including: + - fix building Bison 2.5 on systems with recent glibc (#5130) + - add patches for Boost 1.64.0 to fix known issues (#5148) + - remove PyCUDA easyconfig for intel/2017a, doesn't work due to incompatibility between GCC 6.3.0 & CUDA 8 (#5156) + - add missing libpng dependency to g2lib-1.4.0 for intel-2017a (#5196) + + v3.4.0 (September 10th 2017) ---------------------------- -- GitLab From 05a21d137492a8becd83a808f670bca280fda23c Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Fri, 13 Oct 2017 12:29:19 +0200 Subject: [PATCH 711/845] adding easyconfigs: OMA-2.1.1.eb --- easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb | 33 ++++++++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb diff --git a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb new file mode 100644 index 0000000000..aceae0f35b --- /dev/null +++ b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/ +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock='PackedBinary' + +name = 'OMA' +version = '2.1.1' + +homepage = 'https://omabrowser.org/standalone/' +description = "The OMA ('Orthologous MAtrix') project is a method and database for the inference of orthologs among complete genomes" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://omabrowser.org/standalone/'] +sources = ['%(name)s.%(version)s.tgz'] +checksums = ['c21fde703a1d13bd759ebc724e09b6d83b9e88abacc7cc1a78fee76972f93ec1'] + +unpack_options = '--strip-components=1' + +install_cmd = 'sh ./install.sh %(installdir)s' + +sanity_check_paths = { + 'files': ['OMA/bin/oma'], + 'dirs': [] +} + +modextrapaths = { + 'PATH': 'OMA/bin', +} + +moduleclass = 'bio' -- GitLab From df196ed539af9569ad14ec99e30acb6cca136c15 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Fri, 13 Oct 2017 12:30:32 +0200 Subject: [PATCH 712/845] style fix --- easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb index aceae0f35b..a699575dbf 100644 --- a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb +++ b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb @@ -23,7 +23,7 @@ install_cmd = 'sh ./install.sh %(installdir)s' sanity_check_paths = { 'files': ['OMA/bin/oma'], - 'dirs': [] + 'dirs': [] } modextrapaths = { -- GitLab From 68b26424e21d74a622beee4d3e9d549b947329c5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Oct 2017 19:07:42 +0200 Subject: [PATCH 713/845] don't use patch for XML-Bare that enforces use of icc when using a GCC-based toolchain --- easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb | 1 - easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb | 1 - 2 files changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb index 14b5d790fe..bff63b7c5c 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-GCCcore-6.3.0.eb @@ -525,7 +525,6 @@ exts_list = [ 'source_tmpl': 'XML-Bare-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], 'checksums': ['865e198e98d904be1683ef5a53a4948f02dabdacde59fc554a082ffbcc5baefd'], - 'patches': ['XML-Bare-0.53_icc.patch'], }), ('Dist::CheckConflicts', '0.11', { 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb index 82a8efae48..c0ab9b354a 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb @@ -523,7 +523,6 @@ exts_list = [ 'source_tmpl': 'XML-Bare-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], 'checksums': ['865e198e98d904be1683ef5a53a4948f02dabdacde59fc554a082ffbcc5baefd'], - 'patches': ['XML-Bare-0.53_icc.patch'], }), ('Dist::CheckConflicts', '0.11', { 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', -- GitLab From 2b90d7c7b90e82da4701c5bae98b02339c27197a Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Fri, 13 Oct 2017 21:07:03 +0200 Subject: [PATCH 714/845] style fixes --- easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb index a699575dbf..cd7c4b382b 100644 --- a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb +++ b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb @@ -9,7 +9,8 @@ name = 'OMA' version = '2.1.1' homepage = 'https://omabrowser.org/standalone/' -description = "The OMA ('Orthologous MAtrix') project is a method and database for the inference of orthologs among complete genomes" +description = """The OMA ('Orthologous MAtrix') project is a method and database for the inference + of orthologs among complete genomes""" toolchain = {'name': 'dummy', 'version': ''} @@ -22,8 +23,8 @@ unpack_options = '--strip-components=1' install_cmd = 'sh ./install.sh %(installdir)s' sanity_check_paths = { - 'files': ['OMA/bin/oma'], - 'dirs': [] + 'files': ['OMA/bin/oma'], + 'dirs': [] } modextrapaths = { -- GitLab From 064346c20dd195523f69052a580f35a605d4105e Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Mon, 16 Oct 2017 09:01:48 +0200 Subject: [PATCH 715/845] style fix --- easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb index cd7c4b382b..927df51cf8 100644 --- a/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb +++ b/easybuild/easyconfigs/o/OMA/OMA-2.1.1.eb @@ -3,7 +3,7 @@ # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics -easyblock='PackedBinary' +easyblock = 'PackedBinary' name = 'OMA' version = '2.1.1' -- GitLab From b7ab9bb9d387b091a3bc3b71c9cb7b86b469caec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 09:46:52 +0200 Subject: [PATCH 716/845] include #5066 in release notes --- RELEASE_NOTES | 1 + 1 file changed, 1 insertion(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index d6488fae95..29bf9ae89a 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -17,6 +17,7 @@ bugfix/update release - added additional easyconfigs for various supported software packages, including: - 3to2 1.1.1, ASAP3 3.10.7, ASAP3 3.10.7, ASE 3.15.0, ASE 3.15.0, ASE 3.15.0, ATK 2.26.0, Albacore 2.0.2, Anaconda2 4.4.0.eb, Anaconda3 4.4.0.eb, BUSCO 1.22, Beast 2.4.7, Bison 2.7, Bison 3.0.4, Bison 3.0.4, Blender 2.79, Boost 1.61.0, Boost 1.64.0, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, beagle lib, binutils 2.26, binutils 2.29, CUDA 9.0.176.eb, Cantera 2.3.0, ccache 3.3.4, cuDNN 7.0.2, DBus 1.11.20, DLCpar 1.0, DMTCP 2.5.1.eb, dbus glib, EMBOSS 6.6.0, EasyBuild 3.4.0.eb, FFTW 3.3.6, FFmpeg 3.3.4, FSLeyes 0.15.0, flex 2.6.4, flex 2.6.4, fmt 3.0.2, GCC 5.5.0, GCC system, GCCcore 5.5.0.eb, GCCcore system.eb, GConf 3.2.6, GLM 0.9.7.6, GST plugins, GStreamer 0.10.36, GTK+ 2.24.31, Gdk Pixbuf, Guile 1.8.8, gimpi 2017b.eb, giolf 2017b.eb, git 2.14.1, gompi system, grib_api 1.24.0, gzip 1.8, HDF5 1.10.1, HDF5 1.10.1, HPL 2.2, HTSlib 1.4.1, HarfBuzz 1.5.1, h5py 2.7.1, h5py 2.7.1, help2man 1.47.4, help2man 1.47.5, hwloc 1.11.8, hwloc 1.11.8, IQ TREE, Infernal 1.1.2, icc system, iccifort system, ifort system, iimpi system, impi 2017.3.196, impi system, intltool 0.51.0, Keras 2.0.8, khmer 2.1.1, LAME 3.99.5, libmatheval 1.1.11, libpng 1.2.58.eb, libxml2 2.9.5, libxslt 1.1.30, libyaml 0.1.6, lxml 4.0.0, M4 1.4.18, M4 1.4.18, Mesquite 2.3.0, Mothur 1.39.5, matplotlib 2.1.0, mpi4py 2.0.0, mympingpong 0.8.0, NEST 2.12.0, NiBabel 2.1.0, nanonet 2.0.0, ncdf4 1.16, ncview 2.1.7, netCDF 4.4.1.1, netCDF 4.4.1.1, numpy 1.13.1, OpenCV 3.3.0, OpenCV 3.3.0, OpenEXR 2.2.0, OpenFOAM Extend, OpenImageIO 1.7.17, OpenMPI 2.1.2, OpenMPI 3.0.0, OpenMPI system, oxford_asl 3.9.6, Pango 1.40.12, ParMGridGen 1.0, Perl 5.26.0, PhyML 3.3.20170530, Pillow 4.2.1, Pillow 4.3.0, PyCUDA 2016.1.2, PyYAML 3.12, Python 2.7.14, Python 2.7.14, Python 3.6.2, Python 3.6.2, protobuf python, protobuf python, protobuf python, protobuf 3.3.0, protobuf 3.4.0, REMORA 1.8.2, REMORA 1.8.2, REMORA 1.8.2, SAS 9.4.eb, SCons 2.5.1, SUNDIALS 2.7.0, ScaLAPACK 2.0.2, scikit image, scikit learn, supermagic 20170824, Tensorflow 1.2.1, Tensorflow 1.3.0, Tensorflow 1.3.0, Valgrind 3.11.0, Valgrind 3.13.0, vsc mympirun, wxPython 3.0.2.0, XML Parser, x264 20170913, x265 2.5, zlib 1.2.11, zlib 1.2.11 - minor enhancements, including: + - add xkeyboard-config component in X11 bundle (#5066) - clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock (#5131) - also consider rdma-core-devel as alternative to libibverbs-devel OS dependency (#5132) - consistently use empty toolchain version in icc easyconfigs to ensure that GCC(core) dep is loaded during installation (#5133) -- GitLab From 4943ffdc5f6b21a0f9d70bb044563461ee70a4e9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 09:47:32 +0200 Subject: [PATCH 717/845] disable optarch for libjpeg-turbo 1.5.1 built with intel/2017a --- .../l/libjpeg-turbo/libjpeg-turbo-1.5.1-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-intel-2017a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-intel-2017a.eb index 921c5c073d..147b6098b1 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-intel-2017a.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-intel-2017a.eb @@ -9,7 +9,7 @@ compression and decompression. libjpeg is a library that implements JPEG image e """ toolchain = {'name': 'intel', 'version': '2017a'} -toolchainopts = {'pic': True} +toolchainopts = {'pic': True, 'optarch': False} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -- GitLab From ad8d617a6aeac2b081f7b0122b976d78a5c69712 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 10:16:43 +0200 Subject: [PATCH 718/845] update $R_LIBS in plotly easyconfig --- .../easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb index ba3ed319ce..4118fcb6bf 100644 --- a/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb @@ -37,4 +37,6 @@ sanity_check_paths = { 'dirs': [name], } +modextrapaths = {'R_LIBS': ''} + moduleclass = 'vis' -- GitLab From 514fd7c70ac818039f84a4efcdb0ba5815558a97 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 13:12:39 +0200 Subject: [PATCH 719/845] include NLopt as a dependency in R easyconfigs that include nloptr as extension --- .../n/NLopt/NLopt-2.4.2-foss-2015a.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-foss-2015b.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-foss-2016a.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-foss-2016b.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb | 1 + .../n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb | 27 +++++++++++++++++ .../n/NLopt/NLopt-2.4.2-intel-2015a.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-intel-2015b.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-intel-2016a.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-intel-2016b.eb | 29 +++++++++++++++++++ .../n/NLopt/NLopt-2.4.2-intel-2017a.eb | 1 + .../easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 1 + .../easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 1 + .../easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb | 1 + .../easyconfigs/r/R/R-3.2.1-foss-2015b.eb | 1 + .../easyconfigs/r/R/R-3.2.1-intel-2015a.eb | 1 + .../easyconfigs/r/R/R-3.2.1-intel-2015b.eb | 1 + .../easyconfigs/r/R/R-3.2.3-foss-2015b.eb | 1 + .../easyconfigs/r/R/R-3.2.3-foss-2016a.eb | 1 + .../easyconfigs/r/R/R-3.2.3-foss-2016b.eb | 1 + .../r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb | 1 + .../easyconfigs/r/R/R-3.2.3-intel-2016a.eb | 1 + .../easyconfigs/r/R/R-3.3.1-foss-2016a.eb | 1 + .../easyconfigs/r/R/R-3.3.1-foss-2016b.eb | 1 + .../easyconfigs/r/R/R-3.3.1-intel-2016b.eb | 1 + .../r/R/R-3.3.3-foss-2016b-X11-20160819.eb | 1 + 26 files changed, 276 insertions(+) create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb create mode 100644 easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb new file mode 100644 index 0000000000..598f5659d6 --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb new file mode 100644 index 0000000000..996f27d1e5 --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb new file mode 100644 index 0000000000..3cc7f423af --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb new file mode 100644 index 0000000000..2cb7f317fc --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb index 37e86398d4..d87c00b9e4 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb @@ -17,6 +17,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] sanity_check_paths = { 'files': ["lib/libnlopt.a", "include/nlopt.h"], diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb new file mode 100644 index 0000000000..6fdb555161 --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb new file mode 100644 index 0000000000..9d64cacae4 --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb new file mode 100644 index 0000000000..f64f92ebf1 --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb new file mode 100644 index 0000000000..3e0d09d2e4 --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb new file mode 100644 index 0000000000..9e371a7cfb --- /dev/null +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'NLopt' +version = '2.4.2' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt' +description = """ NLopt is a free/open-source library for nonlinear optimization, + providing a common interface for a number of different free optimization routines + available online as well as original implementations of various other algorithms. """ + +toolchain = {'name': 'intel', 'version': '2016b'} + +source_urls = ['http://ab-initio.mit.edu/nlopt/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ["lib/libnlopt.a", "include/nlopt.h"], + 'dirs': [""], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb index e7dbf65423..c592fc53a3 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb @@ -17,6 +17,7 @@ toolchain = {'name': 'intel', 'version': '2017a'} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['8099633de9d71cbc06cd435da993eb424bbcdbded8f803cdaa9fb8c6e09c8e89'] configopts = '--enable-shared' diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index d82c3b8db2..323e10cac9 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -22,6 +22,7 @@ dependencies = [ ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it ('Tcl', '8.6.4'), # for tcltk ('Tk', '8.6.4', '-no-X11'), # for tcltk + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index 53bd4b0751..cd4eda7a62 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -22,6 +22,7 @@ dependencies = [ ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it ('Tcl', '8.6.4'), # for tcltk ('Tk', '8.6.4', '-no-X11'), # for tcltk + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb index ab47b2f132..118fa87c0c 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb @@ -24,6 +24,7 @@ dependencies = [ ('Tk', '8.6.4', '-no-X11'), # for tcltk ('cURL', '7.43.0'), # for RCurl ('libxml2', '2.9.2'), # for XML + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb index de7294123d..7ddee60609 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb @@ -24,6 +24,7 @@ dependencies = [ ('Tk', '8.6.4', '-no-X11'), # for tcltk ('cURL', '7.43.0'), # for RCurl ('libxml2', '2.9.2'), # for XML + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb index 644dcc259b..cd9298a1a8 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb @@ -24,6 +24,7 @@ dependencies = [ ('Tk', '8.6.4', '-no-X11'), # for tcltk ('cURL', '7.43.0'), # for RCurl ('libxml2', '2.9.2'), # for XML + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb index 36f8e25856..366494726f 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb @@ -24,6 +24,7 @@ dependencies = [ ('Tk', '8.6.4', '-no-X11'), # for tcltk ('cURL', '7.43.0'), # for RCurl ('libxml2', '2.9.2'), # for XML + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb index 193456e409..491c78774a 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb @@ -27,6 +27,7 @@ dependencies = [ ('GDAL', '2.0.1'), # for rgdal ('PROJ', '4.8.0'), # for rgdal ('GMP', '6.0.0a', '', ('GNU', '4.9.3-2.25')), # for igraph + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb index 48a36233ea..d594757afc 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb @@ -27,6 +27,7 @@ dependencies = [ ('GDAL', '2.0.2'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.0'), # for igraph + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb index c866f9a169..5f2b97f4f5 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb @@ -27,6 +27,7 @@ dependencies = [ ('GDAL', '2.1.0'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.1'), # for igraph + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb index becdf1c504..d81d97762f 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb @@ -38,6 +38,7 @@ dependencies = [ ('GDAL', '2.0.2'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.0'), # for igraph + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb index 470ef9623d..d124a83db4 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb @@ -27,6 +27,7 @@ dependencies = [ ('GDAL', '2.0.2'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.0'), # for igraph + ('NLopt', '2.4.2'), # for nloptr ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016a.eb b/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016a.eb index 7c7e501aad..764b4d8d19 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016a.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016a.eb @@ -33,6 +33,7 @@ dependencies = [ ('GDAL', '2.1.0'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.1'), # for igraph + ('NLopt', '2.4.2'), # for nloptr # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons # ('OpenSSL', '1.0.2h'), diff --git a/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016b.eb index 9380aadc9b..e782836198 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016b.eb @@ -33,6 +33,7 @@ dependencies = [ ('GDAL', '2.1.0'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.1'), # for igraph + ('NLopt', '2.4.2'), # for nloptr # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons # ('OpenSSL', '1.0.2h'), diff --git a/easybuild/easyconfigs/r/R/R-3.3.1-intel-2016b.eb b/easybuild/easyconfigs/r/R/R-3.3.1-intel-2016b.eb index 88223934d1..e878d56ddb 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.1-intel-2016b.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.1-intel-2016b.eb @@ -33,6 +33,7 @@ dependencies = [ ('GDAL', '2.1.0'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.1'), # for igraph + ('NLopt', '2.4.2'), # for nloptr # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons # ('OpenSSL', '1.0.2h'), diff --git a/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb b/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb index 512b0289b6..3579621970 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb @@ -43,6 +43,7 @@ dependencies = [ ('GDAL', '2.1.0'), # for rgdal ('PROJ', '4.9.2'), # for rgdal ('GMP', '6.1.1'), # for igraph + ('NLopt', '2.4.2'), # for nloptr # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons # ('OpenSSL', '1.0.2h'), -- GitLab From 3a935e6b0b616486585045f3d7e9a55458250e3a Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Mon, 16 Oct 2017 13:55:02 +0200 Subject: [PATCH 720/845] HISAT2-2.1.0-intel-2017a --- .../h/HISAT2/HISAT2-2.1.0-intel-2017a.eb | 37 +++++++++++++++++++ .../h/HISAT2/HISAT2-2.1.0_intel-fixes.patch | 13 +++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch diff --git a/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb new file mode 100644 index 0000000000..733703ab54 --- /dev/null +++ b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb @@ -0,0 +1,37 @@ +easyblock = 'MakeCp' + +name = 'HISAT2' +version = '2.1.0' + +homepage = 'https://ccb.jhu.edu/software/hisat2/index.shtml' +description = """HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads + (both DNA and RNA) against the general human population (as well as against a single reference genome).""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['ftp://ftp.ccb.jhu.edu/pub/infphilo/%(namelower)s/downloads/'] +sources = ['%(namelower)s-%(version)s-source.zip'] +patches = ['HISAT2-%(version)s_intel-fixes.patch'] +checksums = [ + '89a276eed1fc07414b1601947bc9466bdeb50e8f148ad42074186fe39a1ee781', # hisat2-2.1.0-source.zip + 'd74a8ee4cc706b7ec1d9f48ca393fa2233f9d9f7988bd925be004532754a6174', # HISAT2-2.1.0_intel-fixes.patch +] + +dependencies = [ + ('NGS', '1.3.0'), + ('ncbi-vdb', '2.8.2'), +] + +buildopts = 'CC="$CC" CPP="$CXX" RELEASE_FLAGS="$CFLAGS" ' +buildopts += "USE_SRA=1 NCBI_NGS_DIR=$EBROOTNGS NCBI_VDB_DIR=$EBROOTNCBIMINVDB" + +executables = ['hisat2', 'hisat2-align-l', 'hisat2-align-s', 'hisat2-build', 'hisat2-build-l', 'hisat2-build-s', + 'hisat2-inspect', 'hisat2-inspect-s', 'hisat2-inspect-l'] +files_to_copy = [(executables, 'bin')] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch new file mode 100644 index 0000000000..a3dc0cb655 --- /dev/null +++ b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch @@ -0,0 +1,13 @@ +--- hisat2-2.1.0/processor_support.h.orig 2017-10-05 16:50:19.290831227 +0200 ++++ hisat2-2.1.0/processor_support.h 2017-10-05 16:50:38.938818748 +0200 +@@ -47,8 +47,8 @@ + __cpuid((int *) ®s, 0); // test if __cpuid() works, if not catch the exception + __cpuid((int *) ®s, 0x1); // POPCNT bit is bit 23 in ECX + #elif defined(USING_INTEL_COMPILER) +- __cpuid((void *) ®s,0); // test if __cpuid() works, if not catch the exception +- __cpuid((void *) ®s,0x1); // POPCNT bit is bit 23 in ECX ++ __cpuid((int *) ®s,0); // test if __cpuid() works, if not catch the exception ++ __cpuid((int *) ®s,0x1); // POPCNT bit is bit 23 in ECX + #elif defined(USING_GCC_COMPILER) + __get_cpuid(0x1, ®s.EAX, ®s.EBX, ®s.ECX, ®s.EDX); + #else -- GitLab From 3f3cf13363109a21bde3356e002f49c5f6163de6 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Mon, 16 Oct 2017 14:16:59 +0200 Subject: [PATCH 721/845] HTSeq-0.9.1-intel-2017a-Python-2.7.13 and Pysam-0.12.0.1-intel-2017a-Python-2.7.13 --- .../HTSeq-0.9.1-intel-2017a-Python-2.7.13.eb | 34 ++++++++++++++++++ ...ysam-0.12.0.1-intel-2017a-Python-2.7.13.eb | 36 +++++++++++++++++++ 2 files changed, 70 insertions(+) create mode 100644 easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017a-Python-2.7.13.eb diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..d576c324cc --- /dev/null +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.9.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = "PythonPackage" + +name = 'HTSeq' +version = '0.9.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www-huber.embl.de/users/anders/HTSeq/' +description = """A framework to process and analyze data from high-throughput sequencing (HTS) assays""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +checksums = ['af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485'] + +dependencies = [ + ('Pysam', '0.12.0.1', versionsuffix), + ('Python', '2.7.13'), + ('matplotlib', '2.0.2', versionsuffix + "-Qt-4.8.7"), +] + +sanity_check_paths = { + 'files': ["bin/htseq-count", "bin/htseq-qa"], + 'dirs': ["lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s-linux-x86_64.egg"], +} + +sanity_check_commands = [('htseq-count --help')] + +options = {'modulename': '%(name)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..433416ba21 --- /dev/null +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 0.9.1.4: +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'PythonPackage' + +name = 'Pysam' +version = '0.12.0.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pysam-developers/pysam' +description = """Pysam is a python module for reading and manipulating Samfiles. + It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/pysam-developers/pysam/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['0abea22a0f97f8d355570062d4e5ab99784701ed01acf4bf6f617974b453256e'] + +dependencies = [ + ('Python', '2.7.13'), + ('ncurses', '6.0'), + ('cURL', '7.54.0'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' -- GitLab From 2143ffe7909be3872634629ef4cee7e0d19582bc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 16:20:16 +0200 Subject: [PATCH 722/845] adding easyconfigs: SAMtools-1.6-intel-2017b.eb --- .../s/SAMtools/SAMtools-1.6-intel-2017b.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100755 easybuild/easyconfigs/s/SAMtools/SAMtools-1.6-intel-2017b.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.6-intel-2017b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.6-intel-2017b.eb new file mode 100755 index 0000000000..a0bf05f899 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.6-intel-2017b.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# Modified by: Adam Huffman +# The Francis Crick Institute +# +# Modified for version 1.4 by: Kurt Lust, UAntwerpen +# +## +name = 'SAMtools' +version = '1.6' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['ee5cd2c8d158a5969a6db59195ff90923c662000816cc0c41a190b2964dbe49e'] + +# The htslib component of SAMtools 1.4 uses zlib, bzip2 and lzma compression. +# The latter is currently provided by XZ. +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.3'), +] + +moduleclass = 'bio' -- GitLab From 8a3f9d50e2022d9da52d816dda76961022dacee1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 17:50:16 +0200 Subject: [PATCH 723/845] adding easyconfigs: QEMU-2.10.1-intel-2017b.eb --- .../q/QEMU/QEMU-2.10.1-intel-2017b.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/q/QEMU/QEMU-2.10.1-intel-2017b.eb diff --git a/easybuild/easyconfigs/q/QEMU/QEMU-2.10.1-intel-2017b.eb b/easybuild/easyconfigs/q/QEMU/QEMU-2.10.1-intel-2017b.eb new file mode 100644 index 0000000000..ee0e6c975a --- /dev/null +++ b/easybuild/easyconfigs/q/QEMU/QEMU-2.10.1-intel-2017b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'QEMU' +version = '2.10.1' + +homepage = 'https://www.qemu.org/' +description = "QEMU is a generic and open source machine emulator and virtualizer." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://download.qemu.org/'] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['1dd51a908fc68c7d935b0b31fb184c5669bc23b5a1b081816e824714f2a11caa'] + +sanity_check_paths = { + 'files': ['bin/qemu-aarch64', 'bin/qemu-alpha', 'bin/qemu-mips', 'bin/qemu-ppc64', 'bin/qemu-x86_64'], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 94abe4655e81d8713794df4c6a59139aa8a92ecb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 18:22:52 +0200 Subject: [PATCH 724/845] adding easyconfigs: CMake-3.9.4-GCCcore-6.4.0.eb --- .../c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..ba6faff50a --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.4' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b5d86f12ae0072db520fdbdad67405f799eb728b610ed66043c20a92b4906ca1'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From c6dc88613a1217cf858ff5a9dfd7e1452008d220 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 18:37:12 +0200 Subject: [PATCH 725/845] adding easyconfigs: Python-3.6.3-intel-2017b.eb --- .../p/Python/Python-3.6.3-intel-2017b.eb | 212 ++++++++++++++++++ 1 file changed, 212 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb new file mode 100644 index 0000000000..7d9af57169 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb @@ -0,0 +1,212 @@ +name = 'Python' +version = '3.6.3' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['ab6193af1921b30f587b302fe385268510e80187ca83ca82d2bfe7ab544c6f91'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + ('GMP', '6.1.2'), + ('XZ', '5.2.3'), + ('libffi', '3.2.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated October 16th 2017 +exts_list = [ + ('setuptools', '36.6.0', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'checksums': [ + '62074589522a798da243f47348f38020d55b6c945652e2f2c09d3a96299812b7', # setuptools-36.6.0.zip + ], + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + 'checksums': [ + '09f243e1a7b461f654c26a725fa373211bb7ff17a9300058b205c61658ca940d', # pip-9.0.1.tar.gz + ], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + 'checksums': [ + 'f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98', # nose-1.3.7.tar.gz + ], + }), + ('numpy', '1.13.3', { + 'patches': ['numpy-1.12.0-mkl.patch'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'checksums': [ + '36ee86d5adbabc4fa2643a073f93d5504bdfed37a149a3a49f4dde259f35a750', # numpy-1.13.3.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch + ], + }), + ('scipy', '0.19.1', { + 'source_tmpl': '%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'checksums': [ + 'a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6', # scipy-0.19.1.tar.gz + ], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + 'checksums': [ + '3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3', # blist-1.3.6.tar.gz + ], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + 'checksums': [ + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz + ], + }), + ('paycheck', '1.0.2', { + 'patches': ['paycheck-1.0.2_setup-open-README-utf8.patch'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'checksums': [ + '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', # paycheck-1.0.2_setup-open-README-utf8.patch + ], + }), + ('pbr', '3.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + 'checksums': [ + '05f61c71aaefc02d8e37c0a3eeb9815ff526ea28b3b76324769e6158d7f95be1', # pbr-3.1.1.tar.gz + ], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + 'checksums': [ + '6aed02de03cba24efabcd600b30540140634fc06cfa603822d508d5361e9f799', # lockfile-0.12.2.tar.gz + ], + }), + ('Cython', '0.27.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': [ + 'e6840a2ba2704f4ffb40e454c36f73aeb440a4005453ee8d7ff6a00d812ba176', # Cython-0.27.1.tar.gz + ], + }), + ('six', '1.11.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'checksums': [ + '70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9', # six-1.11.0.tar.gz + ], + }), + ('dateutil', '2.6.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'checksums': [ + '891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca', # python-dateutil-2.6.1.tar.gz + ], + }), + ('deap', '1.0.2', { + 'patches': ['deap-1.0.2_setup-open-README-utf8.patch'], + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'checksums': [ + 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', # deap-1.0.2_setup-open-README-utf8.patch + ], + }), + ('decorator', '4.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + 'checksums': [ + '7cb64d38cb8002971710c8899fbdfb859a23a364b7c99dab19d1f719c2ba16b5', # decorator-4.1.2.tar.gz + ], + }), + ('arff', '2.1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + 'checksums': [ + 'b8ef2c64ae5318f6884dc0e20b8491b0b1c96151a40077a479e0f57257cab817', # liac-arff-2.1.1.tar.gz + ], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + 'checksums': [ + 'f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c', # pycrypto-2.6.1.tar.gz + ], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + 'checksums': [ + '64cf1ee26d1cde3c73c6d7d107f835fed7c6a2904aef9eac223d57ad800c43fa', # ecdsa-0.13.tar.gz + ], + }), + ('cryptography', '2.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + 'checksums': [ + '2699ed21e1f73dd1bdb7b0b22a517295de07809d535b23e200dd22166037fe6f', # cryptography-2.1.1.tar.gz + ], + }), + ('paramiko', '2.3.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + 'checksums': [ + 'fa6b4f5c9d88f27c60fd9578146ff24e99d4b9f63391ff1343305bfd766c4660', # paramiko-2.3.1.tar.gz + ], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'checksums': [ + '0832bcf47acd283788593e7a0f542407bd9550a55a8a8435214a1960e04bcb04', # pyparsing-2.2.0.tar.gz + ], + }), + ('netifaces', '0.10.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + 'checksums': [ + '0c4da523f36d36f1ef92ee183f2512f3ceb9a9d2a45f7d19cda5a42c6689ebe0', # netifaces-0.10.6.tar.gz + ], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + 'checksums': [ + '38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd', # netaddr-0.7.19.tar.gz + ], + }), + ('pandas', '0.20.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + 'checksums': [ + 'a777e07633d83d546c55706420179551c8e01075b53c497dcf8ae4036766bc66', # pandas-0.20.3.tar.gz + ], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + 'checksums': [ + '02f8102c2436bb03b3ee6dede1919d1dac8a427541652e5ec95171ec8adbc93a', # virtualenv-15.1.0.tar.gz + ], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + 'checksums': [ + '49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491', # docopt-0.6.2.tar.gz + ], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + 'checksums': [ + '7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085', # joblib-0.11.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From 3ea93b61966b619a8a553ed7ebeb16bead16158c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 18:55:52 +0200 Subject: [PATCH 726/845] fix long lines --- easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb index 7d9af57169..2cfc321a0c 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb @@ -84,7 +84,8 @@ exts_list = [ 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], 'checksums': [ '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz - 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', # paycheck-1.0.2_setup-open-README-utf8.patch + # paycheck-1.0.2_setup-open-README-utf8.patch + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', ], }), ('pbr', '3.1.1', { @@ -124,7 +125,8 @@ exts_list = [ 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], 'checksums': [ 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz - '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', # deap-1.0.2_setup-open-README-utf8.patch + # deap-1.0.2_setup-open-README-utf8.patch + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', ], }), ('decorator', '4.1.2', { -- GitLab From cbe04d1ff9c013fa9a70c873a3a5729c6da248d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 19:23:33 +0200 Subject: [PATCH 727/845] adding easyconfigs: matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb, freetype-2.8.1-GCCcore-6.4.0.eb --- .../freetype/freetype-2.8.1-GCCcore-6.4.0.eb | 39 +++++++++++++++ ...plotlib-2.1.0-intel-2017b-Python-2.7.14.eb | 50 +++++++++++++++++++ 2 files changed, 89 insertions(+) create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.8.1-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.8.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.8.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..b081693c5d --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.8.1-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +name = 'freetype' +version = '2.8.1' + +homepage = 'http://freetype.org' + +description = """ + FreeType 2 is a software font engine that is designed to be small, efficient, + highly customizable, and portable while capable of producing high-quality + output (glyph images). It can be used in graphics libraries, display servers, + font conversion tools, text image generation tools, and many other products + as well. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['876711d064a6a1bd74beb18dd37f219af26100f72daaebd2d86cb493d7cd7ec6'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libpng', '1.6.32'), + ('zlib', '1.2.11'), +] + +configopts = '--with-harfbuzz=no' + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', + 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..ac4bb190d3 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,50 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.14'), + ('libpng', '1.6.32'), + ('freetype', '2.8.1'), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_tmpl': 'cycler-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'checksums': [ + 'cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8', # cycler-0.10.0.tar.gz + ], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + 'checksums': [ + '4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387', # matplotlib-2.1.0.tar.gz + ], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' -- GitLab From 322ba34f75b51d34610d0a8d2da332cc72b11c8f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 19:23:56 +0200 Subject: [PATCH 728/845] adding easyconfigs: CatMAP-20170927-intel-2017b-Python-2.7.14.eb, ASE-3.15.0-intel-2017b-Python-2.7.14.eb, MPFR-3.1.6-GCCcore-6.4.0.eb, MPC-1.0.3-intel-2017b-MPFR-3.1.6.eb --- .../ASE-3.15.0-intel-2017b-Python-2.7.14.eb | 26 +++++++++ ...tMAP-20170927-intel-2017b-Python-2.7.14.eb | 56 +++++++++++++++++++ .../m/MPC/MPC-1.0.3-intel-2017b-MPFR-3.1.6.eb | 35 ++++++++++++ .../m/MPFR/MPFR-3.1.6-GCCcore-6.4.0.eb | 39 +++++++++++++ 4 files changed, 156 insertions(+) create mode 100644 easybuild/easyconfigs/a/ASE/ASE-3.15.0-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/c/CatMAP/CatMAP-20170927-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017b-MPFR-3.1.6.eb create mode 100644 easybuild/easyconfigs/m/MPFR/MPFR-3.1.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.15.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..11fe354a72 --- /dev/null +++ b/easybuild/easyconfigs/a/ASE/ASE-3.15.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'ASE' +version = '3.15.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://wiki.fysik.dtu.dk/ase/' +description = """ASE is a python package providing an open source Atomic Simulation Environment + in the Python scripting language.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['5e22d961b1311ef4ba2d83527f7cc7448abac8cf9bddd1593bee548459263fe8'] + +dependencies = [ + ('Python', '2.7.14'), +] + +sanity_check_paths = { + 'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CatMAP/CatMAP-20170927-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/c/CatMAP/CatMAP-20170927-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..50bed428e5 --- /dev/null +++ b/easybuild/easyconfigs/c/CatMAP/CatMAP-20170927-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,56 @@ +easyblock = 'Bundle' + +name = 'CatMAP' +version = '20170927' +commit_id = '5d3d6c0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://catmap.readthedocs.io/' +description = """Catalyst Micro-kinetic Analysis Package for automated creation of micro-kinetic models used + in catalyst screening.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +dependencies = [ + ('Python', '2.7.14'), + ('matplotlib', '2.1.0', versionsuffix), + ('ASE', '3.15.0', versionsuffix), + ('MPFR', '3.1.6'), # for gmpy2 + ('MPC', '1.0.3', '-MPFR-3.1.6'), # for gmpy2 +] + +exts_defaultclass = 'PythonPackage' + +exts_list = [ + ('mpmath', '1.0.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mpmath/'], + 'checksums': [ + '04d14803b6875fe6d69e6dccea87d5ae5599802e4b1df7997bddd2024001050c', # mpmath-1.0.0.tar.gz + ], + }), + ('gmpy2', '2.0.8', { + 'source_tmpl': 'gmpy2-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/g/gmpy2/'], + 'checksums': [ + 'dd233e3288b90f21b0bb384bcc7a7e73557bb112ccf0032ad52aa614eb373d3f', # gmpy2-2.0.8.zip + ], + }), + ('CatMAP', '20170927', { + 'source_tmpl': '5d3d6c0.tar.gz', + 'source_urls': ['https://github.com/SUNCAT-Center/catmap/archive/'], + 'checksums': [ + '3906fdae05407244bb7c936d62eb326ce0b93421ef5c03c726a85eab6894926b', # 5d3d6c0.tar.gz + ], + }), +] + +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017b-MPFR-3.1.6.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017b-MPFR-3.1.6.eb new file mode 100644 index 0000000000..229e0a78b4 --- /dev/null +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017b-MPFR-3.1.6.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'MPC' +version = '1.0.3' +mpfr_ver = '3.1.6' +versionsuffix = '-MPFR-%s' % mpfr_ver + +homepage = 'http://www.multiprecision.org/' +description = """Gnu Mpc is a C library for the arithmetic of + complex numbers with arbitrarily high precision and correct + rounding of the result. It extends the principles of the IEEE-754 + standard for fixed precision real floating point numbers to + complex numbers, providing well-defined semantics for every + operation. At the same time, speed of operation at high precision + is a major design goal.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['http://www.multiprecision.org/mpc/download/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3'] + +dependencies = [ + ('GMP', '6.1.2'), + ('MPFR', mpfr_ver), +] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpc.%s' % SHLIB_EXT, 'include/mpc.h'], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f334f1bb5a --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.6-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.6' + +homepage = 'http://www.mpfr.org' + +description = """ + The MPFR library is a C library for multiple-precision floating-point + computations with correct rounding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = [ + 'cf4f4b2d80abb79e820e78c8077b6725bbbb4e8f41896783c899087be0e94068', # mpfr-3.1.6.tar.bz2 + '48672135ee823e33fde65d3d252729b69731115421afbaab55d94023376e9348', # MPFR_ictce_remove-deprecated-mp.patch +] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GMP', '6.1.2'), +] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 63a5e155b9838fd771d5f8b9f0da2f3c8aca9566 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 20:39:10 +0200 Subject: [PATCH 729/845] minor tweaks to release notes for EasyBuild v3.4.1 --- RELEASE_NOTES | 24 ++++++++++++++---------- 1 file changed, 14 insertions(+), 10 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 29bf9ae89a..e14af396a8 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,8 +3,8 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,566 easyconfig files, for 1,293 different software packages, -25 different (compiler) toolchains, 13 software bundles and 1 meta-package. +The latest version of easybuild-easyconfig provides 7,739 easyconfig files, for 1,304 different software packages, +26 different (compiler) toolchains, 13 software bundles and 1 meta-package. v3.4.1 (October 16th 2017) -------------------------- @@ -15,26 +15,30 @@ bugfix/update release - ASAP3 (#5200), Albacore (#5153), DLCpar (#5209), FSLeyes (#5192), IQ-TREE (#3695), NEST (#5515), nanonet (#5149), oxford_asl (#5193), REMORA (#5159), SAS (#5208), supermagic (#5187) - added additional easyconfigs for various supported software packages, including: - - 3to2 1.1.1, ASAP3 3.10.7, ASAP3 3.10.7, ASE 3.15.0, ASE 3.15.0, ASE 3.15.0, ATK 2.26.0, Albacore 2.0.2, Anaconda2 4.4.0.eb, Anaconda3 4.4.0.eb, BUSCO 1.22, Beast 2.4.7, Bison 2.7, Bison 3.0.4, Bison 3.0.4, Blender 2.79, Boost 1.61.0, Boost 1.64.0, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, Boost 1.65.1, beagle lib, binutils 2.26, binutils 2.29, CUDA 9.0.176.eb, Cantera 2.3.0, ccache 3.3.4, cuDNN 7.0.2, DBus 1.11.20, DLCpar 1.0, DMTCP 2.5.1.eb, dbus glib, EMBOSS 6.6.0, EasyBuild 3.4.0.eb, FFTW 3.3.6, FFmpeg 3.3.4, FSLeyes 0.15.0, flex 2.6.4, flex 2.6.4, fmt 3.0.2, GCC 5.5.0, GCC system, GCCcore 5.5.0.eb, GCCcore system.eb, GConf 3.2.6, GLM 0.9.7.6, GST plugins, GStreamer 0.10.36, GTK+ 2.24.31, Gdk Pixbuf, Guile 1.8.8, gimpi 2017b.eb, giolf 2017b.eb, git 2.14.1, gompi system, grib_api 1.24.0, gzip 1.8, HDF5 1.10.1, HDF5 1.10.1, HPL 2.2, HTSlib 1.4.1, HarfBuzz 1.5.1, h5py 2.7.1, h5py 2.7.1, help2man 1.47.4, help2man 1.47.5, hwloc 1.11.8, hwloc 1.11.8, IQ TREE, Infernal 1.1.2, icc system, iccifort system, ifort system, iimpi system, impi 2017.3.196, impi system, intltool 0.51.0, Keras 2.0.8, khmer 2.1.1, LAME 3.99.5, libmatheval 1.1.11, libpng 1.2.58.eb, libxml2 2.9.5, libxslt 1.1.30, libyaml 0.1.6, lxml 4.0.0, M4 1.4.18, M4 1.4.18, Mesquite 2.3.0, Mothur 1.39.5, matplotlib 2.1.0, mpi4py 2.0.0, mympingpong 0.8.0, NEST 2.12.0, NiBabel 2.1.0, nanonet 2.0.0, ncdf4 1.16, ncview 2.1.7, netCDF 4.4.1.1, netCDF 4.4.1.1, numpy 1.13.1, OpenCV 3.3.0, OpenCV 3.3.0, OpenEXR 2.2.0, OpenFOAM Extend, OpenImageIO 1.7.17, OpenMPI 2.1.2, OpenMPI 3.0.0, OpenMPI system, oxford_asl 3.9.6, Pango 1.40.12, ParMGridGen 1.0, Perl 5.26.0, PhyML 3.3.20170530, Pillow 4.2.1, Pillow 4.3.0, PyCUDA 2016.1.2, PyYAML 3.12, Python 2.7.14, Python 2.7.14, Python 3.6.2, Python 3.6.2, protobuf python, protobuf python, protobuf python, protobuf 3.3.0, protobuf 3.4.0, REMORA 1.8.2, REMORA 1.8.2, REMORA 1.8.2, SAS 9.4.eb, SCons 2.5.1, SUNDIALS 2.7.0, ScaLAPACK 2.0.2, scikit image, scikit learn, supermagic 20170824, Tensorflow 1.2.1, Tensorflow 1.3.0, Tensorflow 1.3.0, Valgrind 3.11.0, Valgrind 3.13.0, vsc mympirun, wxPython 3.0.2.0, XML Parser, x264 20170913, x265 2.5, zlib 1.2.11, zlib 1.2.11 + - Anaconda2/3 4.4.0, Blender 2.79, Boost 1.65.1, FFmpeg 3.3.4, GCC 5.5.0, h5py 2.7.1, Keras 2.0.8, matplotlib 2.1.0, + mympingpong 0.8.0, OpenCV 3.3.0, OpenFOAM-Extend 4.0, OpenMPI 2.1.2 + 3.0.0, Pillow 4.3.0, Python 2.7.14 + 3.6.3, + scikit-image 0.13.0, scikit-learn 0.19.0, Tensorflow 1.3.0, vsc-mympirun 4.0.2 - minor enhancements, including: - add xkeyboard-config component in X11 bundle (#5066) - clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock (#5131) - - also consider rdma-core-devel as alternative to libibverbs-devel OS dependency (#5132) - - consistently use empty toolchain version in icc easyconfigs to ensure that GCC(core) dep is loaded during installation (#5133) - - consistently use empty toolchain version in ifort easyconfigs to ensure that GCC(core) dep is loaded during installation (#5134) - also install run_rcorrector.pl with Rcorrector (#5135) - add sha256 checksum to PyCUDA easyconfig (#5154) - - add missing Perl extensions in Worker/1.6.7 (#5157 - fix/improve description in HDF5 easyconfigs (#5182) - include heatmap3 extension for R 3.4.0 (#5185) - add ComplexHeatmap to Bioconductor 3.5 bundle + dep pkgs in R 3.4.0 easyconfig (#5195) - - fix source_urls for Szip 2.1 & include SHA256 checksum (#5206) - - remove unneeded --with-fft-incs configure option for ABINIT (#5207) - various bug fixes, including: - fix building Bison 2.5 on systems with recent glibc (#5130) + - also consider rdma-core-devel as alternative to libibverbs-devel OS dependency (#5132) + - consistently use empty toolchain version in icc & ifort easyconfigs to ensure that GCC(core) dep is loaded during installation (#5133, #5134) - add patches for Boost 1.64.0 to fix known issues (#5148) - remove PyCUDA easyconfig for intel/2017a, doesn't work due to incompatibility between GCC 6.3.0 & CUDA 8 (#5156) - - add missing libpng dependency to g2lib-1.4.0 for intel-2017a (#5196) + - add missing Perl extensions in Worker/1.6.7 (#5157) + - add missing libpng dependency to g2lib-1.4.0 easyconfig using intel-2017a (#5196) + - fix source_urls for Szip 2.1 & include SHA256 checksum (#5206) + - remove unneeded --with-fft-incs configure option for ABINIT (#5207) + - disable optarch for libjpeg-turbo 1.5.1 built with intel/2017a (#5214) + - update $R_LIBS in plotly easyconfig (#5215) + - include NLopt as a dependency in R easyconfigs that include nloptr as extension (#5217) v3.4.0 (September 10th 2017) -- GitLab From 76a5819c0172964d22ca6630f840c819ab9f2716 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 20:39:23 +0200 Subject: [PATCH 730/845] bump version to 3.4.1 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index df6b66c143..1db837c34f 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.5.0.dev0' +VERSION = '3.4.1' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 58d1f82af30b86c350534fddf25fb52c8e54a803 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 20:41:42 +0200 Subject: [PATCH 731/845] move 'configopts' line down below deps --- easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb index ba6faff50a..24fa6e4144 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.4-GCCcore-6.4.0.eb @@ -16,8 +16,6 @@ source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] checksums = ['b5d86f12ae0072db520fdbdad67405f799eb728b610ed66043c20a92b4906ca1'] -configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' - builddependencies = [ ('binutils', '2.28'), ] @@ -33,6 +31,8 @@ osdependencies = [ ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), ] +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + sanity_check_paths = { 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], 'dirs': [], -- GitLab From 44bedc2ec2ac41389f03cc90f4e6f0d9b25a12cf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Oct 2017 21:43:30 +0200 Subject: [PATCH 732/845] enable use of -fPIC for NLopt --- easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb | 1 + easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb | 1 + 11 files changed, 11 insertions(+) diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb index 598f5659d6..c0349ece4c 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015a.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb index 996f27d1e5..ebc84beb03 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2015b.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb index 3cc7f423af..fbc9306529 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016a.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb index 2cb7f317fc..7d36e76b5d 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-foss-2016b.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb index d87c00b9e4..d5d348b06d 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb index 6fdb555161..059db90ed1 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.7.20.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb index 9d64cacae4..f6aac82bc5 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015a.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb index f64f92ebf1..9cf7906efc 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2015b.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb index 3e0d09d2e4..18b11651d0 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016a.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb index 9e371a7cfb..7498c98f6a 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2016b.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'intel', 'version': '2016b'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb index c592fc53a3..93bcf8525b 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb @@ -14,6 +14,7 @@ description = """ NLopt is a free/open-source library for nonlinear optimization available online as well as original implementations of various other algorithms. """ toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} source_urls = ['http://ab-initio.mit.edu/nlopt/'] sources = [SOURCELOWER_TAR_GZ] -- GitLab From cf86ad921a2967a48b88d6b613c83bada7203527 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 09:29:48 +0200 Subject: [PATCH 733/845] adding easyconfigs: Rust-1.21.0-foss-2017b.eb --- .../r/Rust/Rust-1.21.0-foss-2017b.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/r/Rust/Rust-1.21.0-foss-2017b.eb diff --git a/easybuild/easyconfigs/r/Rust/Rust-1.21.0-foss-2017b.eb b/easybuild/easyconfigs/r/Rust/Rust-1.21.0-foss-2017b.eb new file mode 100644 index 0000000000..7125821aa9 --- /dev/null +++ b/easybuild/easyconfigs/r/Rust/Rust-1.21.0-foss-2017b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Rust' +version = '1.21.0' + +homepage = 'https://www.rust-lang.org' +description = """Rust is a systems programming language that runs blazingly fast, prevents segfaults, + and guarantees thread safety.""" + +toolchain = {'name': 'foss', 'version': '2017b'} + +source_urls = ['https://static.rust-lang.org/dist/'] +sources = ['rustc-%(version)s-src.tar.gz'] +checksums = ['1707c142244b5bd909993559c6116c81987c1de21d6207c05d3ecbe5bba548fa'] + +builddependencies = [ + ('Python', '2.7.14'), + ('CMake', '3.9.4'), +] + +sanity_check_paths = { + 'files': ['bin/rustc', 'bin/rustdoc'], + 'dirs': ['share/doc', 'share/man', 'lib/rustlib'], +} + +moduleclass = 'lang' -- GitLab From 57256ee2700ae904cc205e6906dfb7fcac85d1f0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 09:37:16 +0200 Subject: [PATCH 734/845] adding easyconfigs: Meson-0.43.0-intel-2017b-Python-3.6.3.eb, Ninja-1.8.2-intel-2017b.eb --- .../Meson-0.43.0-intel-2017b-Python-3.6.3.eb | 27 +++++++++++++++++++ .../n/Ninja/Ninja-1.8.2-intel-2017b.eb | 25 +++++++++++++++++ 2 files changed, 52 insertions(+) create mode 100644 easybuild/easyconfigs/m/Meson/Meson-0.43.0-intel-2017b-Python-3.6.3.eb create mode 100644 easybuild/easyconfigs/n/Ninja/Ninja-1.8.2-intel-2017b.eb diff --git a/easybuild/easyconfigs/m/Meson/Meson-0.43.0-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/m/Meson/Meson-0.43.0-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..5cc66e4637 --- /dev/null +++ b/easybuild/easyconfigs/m/Meson/Meson-0.43.0-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'Meson' +version = '0.43.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://mesonbuild.com' +description = "Meson is a cross-platform build system designed to be both as fast and as user friendly as possible." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '3.6.3'), + ('Ninja', '1.8.2'), +] + +options = {'modulename': 'mesonbuild'} + +sanity_check_paths = { + 'files': ['bin/meson'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/Ninja/Ninja-1.8.2-intel-2017b.eb b/easybuild/easyconfigs/n/Ninja/Ninja-1.8.2-intel-2017b.eb new file mode 100644 index 0000000000..3475dab343 --- /dev/null +++ b/easybuild/easyconfigs/n/Ninja/Ninja-1.8.2-intel-2017b.eb @@ -0,0 +1,25 @@ +easyblock = 'CmdCp' + +name = 'Ninja' +version = '1.8.2' + +homepage = 'https://ninja-build.org/' +description = "Ninja is a small build system with a focus on speed." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/ninja-build/ninja/archive/'] +sources = ['v%(version)s.tar.gz'] + +builddependencies = [('Python', '2.7.14')] + +cmds_map = [('.*', "./configure.py --bootstrap")] + +files_to_copy = [(['ninja'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/ninja'], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 2a6f33e8d019179c05b6fbf9bab97ec97782aec6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 10:35:36 +0200 Subject: [PATCH 735/845] last update to release notes for EasyBuild v3.4.1 --- RELEASE_NOTES | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index e14af396a8..d5efc0cb31 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,7 +3,7 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,739 easyconfig files, for 1,304 different software packages, +The latest version of easybuild-easyconfig provides 7,745 easyconfig files, for 1,305 different software packages, 26 different (compiler) toolchains, 13 software bundles and 1 meta-package. v3.4.1 (October 16th 2017) @@ -13,26 +13,28 @@ bugfix/update release - added easyconfigs for new toolchain giolf/2017b (#5140) - added example easyconfig files for 11 new software packages: - ASAP3 (#5200), Albacore (#5153), DLCpar (#5209), FSLeyes (#5192), IQ-TREE (#3695), NEST (#5515), - nanonet (#5149), oxford_asl (#5193), REMORA (#5159), SAS (#5208), supermagic (#5187) + nanonet (#5149), oxford_asl (#5193), QEMU (#5220), REMORA (#5159), SAS (#5208), supermagic (#5187) - added additional easyconfigs for various supported software packages, including: - - Anaconda2/3 4.4.0, Blender 2.79, Boost 1.65.1, FFmpeg 3.3.4, GCC 5.5.0, h5py 2.7.1, Keras 2.0.8, matplotlib 2.1.0, - mympingpong 0.8.0, OpenCV 3.3.0, OpenFOAM-Extend 4.0, OpenMPI 2.1.2 + 3.0.0, Pillow 4.3.0, Python 2.7.14 + 3.6.3, - scikit-image 0.13.0, scikit-learn 0.19.0, Tensorflow 1.3.0, vsc-mympirun 4.0.2 + - Anaconda2/3 4.4.0, Blender 2.79, Boost 1.65.1, CMake 3.9.4, FFmpeg 3.3.4, GCC 5.5.0, h5py 2.7.1, Keras 2.0.8, + matplotlib 2.1.0, mympingpong 0.8.0, OpenCV 3.3.0, OpenFOAM-Extend 4.0, OpenMPI 2.1.2 + 3.0.0, Pillow 4.3.0, + Python 2.7.14 + 3.6.2, SAMtools 1.6, scikit-image 0.13.0, scikit-learn 0.19.0, Tensorflow 1.3.0, vsc-mympirun 4.0.2 - minor enhancements, including: - add xkeyboard-config component in X11 bundle (#5066) - clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock (#5131) - also install run_rcorrector.pl with Rcorrector (#5135) - - add sha256 checksum to PyCUDA easyconfig (#5154) + - add SHA256 checksum to PyCUDA easyconfig (#5154) - fix/improve description in HDF5 easyconfigs (#5182) - include heatmap3 extension for R 3.4.0 (#5185) - add ComplexHeatmap to Bioconductor 3.5 bundle + dep pkgs in R 3.4.0 easyconfig (#5195) - various bug fixes, including: + - fix source URLs for AUGUSTUS 3.2.3 (#5119) - fix building Bison 2.5 on systems with recent glibc (#5130) - also consider rdma-core-devel as alternative to libibverbs-devel OS dependency (#5132) - consistently use empty toolchain version in icc & ifort easyconfigs to ensure that GCC(core) dep is loaded during installation (#5133, #5134) - add patches for Boost 1.64.0 to fix known issues (#5148) - remove PyCUDA easyconfig for intel/2017a, doesn't work due to incompatibility between GCC 6.3.0 & CUDA 8 (#5156) - - add missing Perl extensions in Worker/1.6.7 (#5157) + - add missing Perl extensions in easyconfig for Worker 1.6.7 (#5157) + - fix checksums for packages that download from ``github.com/x/y/archive`` (#5162) - add missing libpng dependency to g2lib-1.4.0 easyconfig using intel-2017a (#5196) - fix source_urls for Szip 2.1 & include SHA256 checksum (#5206) - remove unneeded --with-fft-incs configure option for ABINIT (#5207) -- GitLab From ff6a334eb7fcde601f54689f8b2da05772aee81b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 11:15:22 +0200 Subject: [PATCH 736/845] also include #5211 in release notes --- RELEASE_NOTES | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index d5efc0cb31..4b9efdb086 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,7 +3,7 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,745 easyconfig files, for 1,305 different software packages, +The latest version of easybuild-easyconfig provides 7,746 easyconfig files, for 1,306 different software packages, 26 different (compiler) toolchains, 13 software bundles and 1 meta-package. v3.4.1 (October 16th 2017) @@ -11,9 +11,9 @@ v3.4.1 (October 16th 2017) bugfix/update release - added easyconfigs for new toolchain giolf/2017b (#5140) -- added example easyconfig files for 11 new software packages: +- added example easyconfig files for 13 new software packages: - ASAP3 (#5200), Albacore (#5153), DLCpar (#5209), FSLeyes (#5192), IQ-TREE (#3695), NEST (#5515), - nanonet (#5149), oxford_asl (#5193), QEMU (#5220), REMORA (#5159), SAS (#5208), supermagic (#5187) + nanonet (#5149), OMA (#5211), oxford_asl (#5193), QEMU (#5220), REMORA (#5159), SAS (#5208), supermagic (#5187) - added additional easyconfigs for various supported software packages, including: - Anaconda2/3 4.4.0, Blender 2.79, Boost 1.65.1, CMake 3.9.4, FFmpeg 3.3.4, GCC 5.5.0, h5py 2.7.1, Keras 2.0.8, matplotlib 2.1.0, mympingpong 0.8.0, OpenCV 3.3.0, OpenFOAM-Extend 4.0, OpenMPI 2.1.2 + 3.0.0, Pillow 4.3.0, -- GitLab From 2a553f36a4a4264918de099d9215be41ad66d98d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 11:36:59 +0200 Subject: [PATCH 737/845] add -lssp to $LDFLAGS to work around 'undefined symbol: __stack_chk_guard' problem if glibc-sttic is not installed --- easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb index 2cfc321a0c..d7a533d319 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.6.3-intel-2017b.eb @@ -29,6 +29,10 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] +# workaround for "undefined symbol: __stack_chk_guard" +# see also https://software.intel.com/en-us/forums/intel-c-compiler/topic/610514 +buildopts = 'LDFLAGS="$LDFLAGS -lssp"' + # order is important! # package versions updated October 16th 2017 exts_list = [ -- GitLab From 491545501f3210e99e2da00060bd5d58bf3c2ed3 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Tue, 17 Oct 2017 11:44:24 +0200 Subject: [PATCH 738/845] add description to the patch --- easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch index a3dc0cb655..081bae91de 100644 --- a/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch +++ b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0_intel-fixes.patch @@ -1,3 +1,5 @@ +fix Intel compiler error due to wrong cast to void*, should be int* +author: Kenneth Hoste (HPC-UGent) --- hisat2-2.1.0/processor_support.h.orig 2017-10-05 16:50:19.290831227 +0200 +++ hisat2-2.1.0/processor_support.h 2017-10-05 16:50:38.938818748 +0200 @@ -47,8 +47,8 @@ -- GitLab From 28291791ab49dffa8994e8ecaf23e10a8e921d87 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 12:21:47 +0200 Subject: [PATCH 739/845] also include #5225 in release notes --- RELEASE_NOTES | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 4b9efdb086..ee01e6fae4 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,7 +3,7 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,746 easyconfig files, for 1,306 different software packages, +The latest version of easybuild-easyconfig provides 7,750 easyconfig files, for 1,307 different software packages, 26 different (compiler) toolchains, 13 software bundles and 1 meta-package. v3.4.1 (October 16th 2017) @@ -12,7 +12,7 @@ v3.4.1 (October 16th 2017) bugfix/update release - added easyconfigs for new toolchain giolf/2017b (#5140) - added example easyconfig files for 13 new software packages: - - ASAP3 (#5200), Albacore (#5153), DLCpar (#5209), FSLeyes (#5192), IQ-TREE (#3695), NEST (#5515), + - ASAP3 (#5200), Albacore (#5153), CatMAP (#5225), DLCpar (#5209), FSLeyes (#5192), IQ-TREE (#3695), NEST (#5515), nanonet (#5149), OMA (#5211), oxford_asl (#5193), QEMU (#5220), REMORA (#5159), SAS (#5208), supermagic (#5187) - added additional easyconfigs for various supported software packages, including: - Anaconda2/3 4.4.0, Blender 2.79, Boost 1.65.1, CMake 3.9.4, FFmpeg 3.3.4, GCC 5.5.0, h5py 2.7.1, Keras 2.0.8, -- GitLab From 707a4d71a558e98443f211d31f47934adeb963b8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 12:51:27 +0200 Subject: [PATCH 740/845] adding easyconfigs: MultiQC-1.2-intel-2017b-Python-2.7.14.eb, PyYAML-3.12-intel-2017b-Python-2.7.14.eb --- .../MultiQC-1.2-intel-2017b-Python-2.7.14.eb | 58 +++++++++++++++++++ .../PyYAML-3.12-intel-2017b-Python-2.7.14.eb | 27 +++++++++ 2 files changed, 85 insertions(+) create mode 100644 easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..1f503735d7 --- /dev/null +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,58 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Adam Huffman +# The Francis Crick Institute +# Elements derived from work by Pablo Escobar +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'Bundle' + +name = 'MultiQC' +version = '1.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://multiqc.info' +description = """Aggregate results from bioinformatics analyses across many samples into a single + report. + + MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general + use tool, perfect for summarising the output from numerous bioinformatics tools.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +dependencies = [ + ('Python', '2.7.14'), + ('matplotlib', '2.1.0', versionsuffix), + ('PyYAML', '3.12', versionsuffix), +] + +exts_defaultclass = 'PythonPackage' + +exts_list = [ + ('MarkupSafe', '1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/markupsafe'], + }), + ('click', '6.7', { + 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], + }), + ('simplejson', '3.11.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/simplejson/'], + }), + ('Jinja2', '2.9.6', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + }), + ('multiqc', version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/multiqc/'], + }), +] + +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/multiqc'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..06d4d1d972 --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'PyYAML' +version = '3.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = "https://pypi.python.org/pypi/PyYAML/" +description = """PyYAML is a YAML parser and emitter for the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.14'), + ('libyaml', '0.1.7', '', True), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' -- GitLab From 221d1d1b733f08a11465993ba73091efbc7b91f6 Mon Sep 17 00:00:00 2001 From: Samuel Moors Date: Tue, 17 Oct 2017 13:41:33 +0200 Subject: [PATCH 741/845] fix checksum --- easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb index 733703ab54..c978849428 100644 --- a/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HISAT2/HISAT2-2.1.0-intel-2017a.eb @@ -14,7 +14,7 @@ sources = ['%(namelower)s-%(version)s-source.zip'] patches = ['HISAT2-%(version)s_intel-fixes.patch'] checksums = [ '89a276eed1fc07414b1601947bc9466bdeb50e8f148ad42074186fe39a1ee781', # hisat2-2.1.0-source.zip - 'd74a8ee4cc706b7ec1d9f48ca393fa2233f9d9f7988bd925be004532754a6174', # HISAT2-2.1.0_intel-fixes.patch + '7986dbcdb56b4bf5494dd70b215e90e321ca887dbdafc48de7a13e6b5abd038b', # HISAT2-2.1.0_intel-fixes.patch ] dependencies = [ -- GitLab From aa66a1cf65fff93be33a4abf0e71aeb76d1e9135 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 14:52:46 +0200 Subject: [PATCH 742/845] fix release date for EasyBuild v3.4.1 --- RELEASE_NOTES | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index ee01e6fae4..c5a71e76e0 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,7 +6,7 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 7,750 easyconfig files, for 1,307 different software packages, 26 different (compiler) toolchains, 13 software bundles and 1 meta-package. -v3.4.1 (October 16th 2017) +v3.4.1 (October 17th 2017) -------------------------- bugfix/update release -- GitLab From 9b366461ca1107b560c0b15333d550b828f0172f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 15:17:10 +0200 Subject: [PATCH 743/845] add SHA256 checksums for MultiQC & PyYAML --- .../MultiQC-1.2-intel-2017b-Python-2.7.14.eb | 15 +++++++++++++++ .../PyYAML-3.12-intel-2017b-Python-2.7.14.eb | 1 + 2 files changed, 16 insertions(+) diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb index 1f503735d7..44cd5036d2 100644 --- a/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb @@ -31,18 +31,33 @@ exts_defaultclass = 'PythonPackage' exts_list = [ ('MarkupSafe', '1.0', { 'source_urls': ['https://pypi.python.org/packages/source/m/markupsafe'], + 'checksums': [ + 'a6be69091dac236ea9c6bc7d012beab42010fa914c459791d627dad4910eb665', # MarkupSafe-1.0.tar.gz + ], }), ('click', '6.7', { 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], + 'checksums': [ + 'f15516df478d5a56180fbf80e68f206010e6d160fc39fa508b65e035fd75130b', # click-6.7.tar.gz + ], }), ('simplejson', '3.11.1', { 'source_urls': ['https://pypi.python.org/packages/source/s/simplejson/'], + 'checksums': [ + '01a22d49ddd9a168b136f26cac87d9a335660ce07aa5c630b8e3607d6f4325e7', # simplejson-3.11.1.tar.gz + ], }), ('Jinja2', '2.9.6', { 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + 'checksums': [ + 'ddaa01a212cd6d641401cb01b605f4a4d9f37bfc93043d7f760ec70fb99ff9ff', # Jinja2-2.9.6.tar.gz + ], }), ('multiqc', version, { 'source_urls': ['https://pypi.python.org/packages/source/m/multiqc/'], + 'checksums': [ + '63544cc06c235a4a8ec5eb17425bf660c497cefe9d81cb8f6e621e53fddb5a0c', # multiqc-1.2.tar.gz + ], }), ] diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb index 06d4d1d972..bb6d31425d 100644 --- a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-2.7.14.eb @@ -11,6 +11,7 @@ toolchain = {'name': 'intel', 'version': '2017b'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] +checksums = ['592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab'] dependencies = [ ('Python', '2.7.14'), -- GitLab From b2d59fd6ff16a2d15281b61057cae3b9b0d89b13 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 16:36:29 +0200 Subject: [PATCH 744/845] adding easyconfigs: EasyBuild-3.4.1.eb --- .../e/EasyBuild/EasyBuild-3.4.1.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.1.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.1.eb new file mode 100644 index 0000000000..b668956c7f --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.4.1.eb @@ -0,0 +1,45 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '3.4.1' + +homepage = 'https://easybuilders.github.io/easybuild' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + # vsc-install + 'https://pypi.python.org/packages/82/ec/19d85d2bb91b562195d00db9ac82d7529904e7eabc0597720966bf74714f/', + # vsc-base + 'https://pypi.python.org/packages/f7/66/1ff7ecc4a93ba37e063f5bfbe395e95a547b1dec73b017c2724f4475a958/', + # easybuild-framework + 'https://pypi.python.org/packages/f0/23/4edb6a97f8d7712687e851ee0c3fc0b471b6829a0c9b15bb2dd5533c9d05/', + # easybuild-easyblocks + 'https://pypi.python.org/packages/f7/b0/61f52e6f99c71a289352d3e5071300d340306f4a96f0301bc64ee4f5d433/', + # easybuild-easyconfigs + 'https://pypi.python.org/packages/7f/f7/bbfd15f8c2eab776538c5baa98ad616d519709d6b6b0f47002848069aa33/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-install-0.10.26.tar.gz', + 'vsc-base-2.5.8.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] +checksums = [ + 'f97b5ca8b171964c12347e5b814ae5266698f5ea134056f04ff752a1eb562f30', # vsc-install-0.10.26.tar.gz + '7fcd300f842edf4baade7d0b7a3b462ca7dfb2a411a7532694a90127c6646ee2', # vsc-base-2.5.8.tar.gz + '440fab0cb41bc4a92590f571f24f72cbd8a6df2686dd55c1380cf1333d9f498a', # easybuild-framework-3.4.1.tar.gz + '7994f5c2e2b76c386dcd9e0015de31bad6e9a8e58ea393ae46f77ec35348f041', # easybuild-easyblocks-3.4.1.tar.gz + '9d6626c33284a9c864f07c682ff4fb843041501dd55ee688b3c704dbfd6c7996', # easybuild-easyconfigs-3.4.1.tar.gz +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 9aa213f683c8007699d408a35f4766f806b55d5c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 16:53:57 +0200 Subject: [PATCH 745/845] bump version to v3.5.0.dev0 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 1db837c34f..df6b66c143 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.4.1' +VERSION = '3.5.0.dev0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From d3b9ea05c4d560ff93ceb0b406688fdd93dec54a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 21:02:14 +0200 Subject: [PATCH 746/845] adding easyconfigs: OpenFOAM-5.0-intel-2017a.eb, ParaView-5.4.1-intel-2017a-mpi.eb, CGAL-4.11-intel-2017a-Python-2.7.13.eb --- .../CGAL-4.11-intel-2017a-Python-2.7.13.eb | 37 +++++++++++++ .../o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb | 37 +++++++++++++ .../ParaView-5.4.1-intel-2017a-mpi.eb | 53 +++++++++++++++++++ 3 files changed, 127 insertions(+) create mode 100644 easybuild/easyconfigs/c/CGAL/CGAL-4.11-intel-2017a-Python-2.7.13.eb create mode 100644 easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb create mode 100644 easybuild/easyconfigs/p/ParaView/ParaView-5.4.1-intel-2017a-mpi.eb diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.11-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.11-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000..4c9db1623b --- /dev/null +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.11-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,37 @@ +name = 'CGAL' +version = '4.11' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.cgal.org/' +description = """The goal of the CGAL Open Source Project is to provide easy access to efficient + and reliable geometric algorithms in the form of a C++ library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'strict': True} + +source_urls = ['https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s'] +sources = [SOURCE_TAR_XZ] +checksums = ['27a7762e5430f5392a1fe12a3a4abdfe667605c40224de1c6599f49d66cfbdd2'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Python', '2.7.13'), + ('Boost', '1.65.0', versionsuffix), + ('MPFR', '3.1.5'), + ('GMP', '6.1.2'), + ('libGLU', '9.0.0'), + ('Qt', '4.8.7'), +] + +builddependencies = [ + ('CMake', '3.9.1'), + ('Eigen', '3.3.4', '', True), +] + +configopts = "-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include\;$EBROOTLIBGLU/include " +configopts += "-DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s " % SHLIB_EXT +configopts += "-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s " % SHLIB_EXT +configopts += "-DWITH_ZLIB=ON -DWITH_MPFR=ON -DWITH_OpenGL=ON -DWITH_Eigen3=ON " +configopts += "-DWITH_GMPXX=ON -DWITH_LAPACK=ON -DWITH_BLAS=ON " + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb new file mode 100644 index 0000000000..bbe4a4282f --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb @@ -0,0 +1,37 @@ +name = 'OpenFOAM' +version = '5.0' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'cstd': 'c++11'} + +source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive'] +sources = ['version-%(version)s.tar.gz'] +patches = ['OpenFOAM-%(version)s-cleanup.patch'] +checksums = [ + '4bfd76f1a09748a5065c69b8a16928479206d6ac686b31e63b019643582c16b8', # version-5.0.tar.gz + '8ed6bfb8983d3a3777399ff4e9bc30f99b017fec2d93d3a738e91129c58731a9', # OpenFOAM-5.0-cleanup.patch +] + +dependencies = [ + ('libreadline', '7.0'), + ('ncurses', '6.0'), + # OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes) + ('METIS', '5.1.0'), + ('SCOTCH', '6.0.4'), + ('CGAL', '4.11', '-Python-2.7.13'), + ('ParaView', '5.4.1', '-mpi'), +] + +builddependencies = [ + ('Bison', '3.0.4'), + ('CMake', '3.9.1'), + ('flex', '2.6.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-5.4.1-intel-2017a-mpi.eb b/easybuild/easyconfigs/p/ParaView/ParaView-5.4.1-intel-2017a-mpi.eb new file mode 100644 index 0000000000..89854f5df8 --- /dev/null +++ b/easybuild/easyconfigs/p/ParaView/ParaView-5.4.1-intel-2017a-mpi.eb @@ -0,0 +1,53 @@ +easyblock = 'CMakeMake' + +name = 'ParaView' +version = '5.4.1' +versionsuffix = '-mpi' + +homepage = "http://www.paraview.org" +description = "ParaView is a scientific parallel visualizer." + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' +source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] +sources = ["ParaView-v%(version)s.tar.gz"] +checksums = ['390d0f5dc66bf432e202a39b1f34193af4bf8aad2355338fa5e2778ea07a80e4'] + +dependencies = [ + ('X11', '20170314'), + ('Mesa', '17.0.2'), + ('libGLU', '9.0.0'), + ('Qt', '4.8.7'), + ('zlib', '1.2.11'), + ('HDF5', '1.10.1'), + ('Python', '2.7.13'), +] + +builddependencies = [('CMake', '3.9.1')] + +separate_build_dir = True + +configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON -DPARAVIEW_USE_MPI=ON ' +configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s ' % SHLIB_EXT +configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.%s ' % SHLIB_EXT +configopts += '-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s ' % SHLIB_EXT +configopts += '-DVTK_USE_SYSTEM_HDF5=ON -DPARAVIEW_ENABLE_PYTHON=ON -DBUILD_SHARED_LIBS=ON ' +# if you want to build server only Paraview, uncomment the following line: +# configopts += '-DVTK_USE_X=OFF ' + +# Without internet connection turn off testing (uncomment the following line) +configopts += '-DBUILD_TESTING=OFF ' +# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md +# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly +# Without internet connection, comment the following two lines (configopts and prebuildopts) +configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' + +configopts += ' -DPARAVIEW_QT_VERSION=4 -DQT_QMAKE_EXECUTABLE=$EBROOTQT/bin/qmake ' +# The ParaView server can be cranky, test downloads are quite often failing, especially in the case +# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the +# first serial attempt would fail. +prebuildopts = 'make VTKData ;' + +moduleclass = 'vis' -- GitLab From a4e40799d541e231af619bd2807708da6377b280 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Oct 2017 22:21:58 +0200 Subject: [PATCH 747/845] add missing patch file for OpenFOAM 5.0 --- .../o/OpenFOAM/OpenFOAM-5.0-cleanup.patch | 296 ++++++++++++++++++ 1 file changed, 296 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-cleanup.patch diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-cleanup.patch b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-cleanup.patch new file mode 100644 index 0000000000..90153665dc --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-cleanup.patch @@ -0,0 +1,296 @@ +# This patch removes all need for the ThirdParty files of OpenFOAM: +# we use EB dependencies for everything. It adjusts the paths, variables, etc +# We also let the install dir, compiler, etc be set by EB. +# Lastly, we also fix a small compile issue in 'ptscotchDecomp.C' +# by Kenneth Hoste (HPC-UGent), based on patch for OpenFOAM 4.1 by Ward Poelmans +diff -ru OpenFOAM-5.x-version-5.0.orig/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-5.x-version-5.0/applications/utilities/mesh/manipulation/setSet/Allwmake +--- OpenFOAM-5.x-version-5.0.orig/applications/utilities/mesh/manipulation/setSet/Allwmake 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/applications/utilities/mesh/manipulation/setSet/Allwmake 2017-09-05 13:24:24.551265000 +0200 +@@ -9,11 +9,11 @@ + # + # use readline if available + # +-if [ -f /usr/include/readline/readline.h ] ++if [ -f $EBROOTLIBREADLINE/include/readline/readline.h ] + then + echo " found -- enabling readline support." + export COMP_FLAGS="-DHAS_READLINE" +- export LINK_FLAGS="-lreadline" ++ export LINK_FLAGS="-L$EBROOTLIBREADLINE/lib -lreadline -L$EBROOTNCURSES -lncurses" + fi + + wmake $targetType +diff -ru OpenFOAM-5.x-version-5.0.orig/applications/utilities/postProcessing/graphics/PVReaders/Allwmake OpenFOAM-5.x-version-5.0/applications/utilities/postProcessing/graphics/PVReaders/Allwmake +--- OpenFOAM-5.x-version-5.0.orig/applications/utilities/postProcessing/graphics/PVReaders/Allwmake 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/applications/utilities/postProcessing/graphics/PVReaders/Allwmake 2017-09-05 13:25:02.676363000 +0200 +@@ -14,8 +14,8 @@ + } + + # ensure CMake gets the correct C/C++ compilers +- [ -n "$WM_CC" ] && export CC="$WM_CC" +- [ -n "$WM_CXX" ] && export CXX="$WM_CXX" ++# [ -n "$WM_CC" ] && export CC="$WM_CC" ++# [ -n "$WM_CXX" ] && export CXX="$WM_CXX" + + wmake $targetType vtkPVblockMesh + wmake $targetType vtkPVFoam +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/bashrc OpenFOAM-5.x-version-5.0/etc/bashrc +--- OpenFOAM-5.x-version-5.0.orig/etc/bashrc 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/bashrc 2017-09-05 13:25:43.726219000 +0200 +@@ -43,8 +43,9 @@ + # Please set to the appropriate path if the default is not correct. + # + [ ${BASH_SOURCE:-$0} ] && \ +-export FOAM_INST_DIR=$(cd $(dirname ${BASH_SOURCE:-$0})/../.. && pwd -P) || \ +-export FOAM_INST_DIR=$HOME/$WM_PROJECT ++#export FOAM_INST_DIR=$(cd $(dirname ${BASH_SOURCE:-$0})/../.. && pwd -P) || \ ++#export FOAM_INST_DIR=$HOME/$WM_PROJECT ++# For Easybuild: set by the module + # export FOAM_INST_DIR=~$WM_PROJECT + # export FOAM_INST_DIR=/opt/$WM_PROJECT + # export FOAM_INST_DIR=/usr/local/$WM_PROJECT +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/CGAL OpenFOAM-5.x-version-5.0/etc/config.sh/CGAL +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/CGAL 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/CGAL 2017-09-05 13:27:51.807286000 +0200 +@@ -35,33 +35,8 @@ + # + #------------------------------------------------------------------------------ + +-boost_version=boost-system +-cgal_version=cgal-system +-#cgal_version=CGAL-4.8.1 +- +-thirdPartyPath=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER +- +-if [ "$boost_version" != "boost-system" ] +-then +- export BOOST_ARCH_PATH=$thirdPartyPath/$boost_version +- if [ -d "$BOOST_ARCH_PATH" ] +- then +- _foamAddLib $BOOST_ARCH_PATH/lib +- fi +-else +- unset BOOST_ARCH_PATH +-fi +- +-if [ "$cgal_version" != "cgal-system" ] +-then +- export CGAL_ARCH_PATH=$thirdPartyPath/$cgal_version +- if [ -d "$CGAL_ARCH_PATH" ] +- then +- _foamAddLib $CGAL_ARCH_PATH/lib +- fi +-else +- unset CGAL_ARCH_PATH +-fi ++export CGAL_ARCH_PATH=$EBROOTCGAL ++export BOOST_ARCH_PATH=$EBROOTBOOST + + if [ "$FOAM_VERBOSE" -a "$PS1" ] + then +@@ -70,6 +45,4 @@ + echo " $cgal_version at $CGAL_ARCH_PATH" 1>&2 + fi + +-unset thirdPartyPath +- + #------------------------------------------------------------------------------ +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/gperftools OpenFOAM-5.x-version-5.0/etc/config.sh/gperftools +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/gperftools 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/gperftools 2017-09-05 13:02:34.810678000 +0200 +@@ -29,13 +29,7 @@ + # + #------------------------------------------------------------------------------ + +-version=svn +-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER +- +-GPERFTOOLS_VERSION=gperftools-$version +-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION +- +-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH +-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH ++GPERFTOOLS_VERSION=gperftools-$EBVERSIONGPERFTOOLS ++GPERFTOOLS_ARCH_PATH=$EBROOTGPERFTOOLS + + #------------------------------------------------------------------------------ +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/metis OpenFOAM-5.x-version-5.0/etc/config.sh/metis +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/metis 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/metis 2017-09-05 13:02:34.811995000 +0200 +@@ -34,7 +34,7 @@ + # + #------------------------------------------------------------------------------ + +-export METIS_VERSION=metis-5.1.0 +-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION ++export METIS_VERSION=metis-$EBVERSIONMETIS ++export METIS_ARCH_PATH=$EBROOTMETIS + + #------------------------------------------------------------------------------ +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/mpi OpenFOAM-5.x-version-5.0/etc/config.sh/mpi +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/mpi 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/mpi 2017-09-05 13:02:34.813715000 +0200 +@@ -249,6 +249,9 @@ + _foamAddPath $MPI_ARCH_PATH/bin64 + _foamAddLib $MPI_ARCH_PATH/lib64 + ;; ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; + *) + export FOAM_MPI=dummy + ;; +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/paraview OpenFOAM-5.x-version-5.0/etc/config.sh/paraview +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/paraview 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/paraview 2017-09-05 13:28:25.957902000 +0200 +@@ -41,21 +41,6 @@ + ) \ + && PATH="$cleaned" + +-# Determine the cmake to be used +-unset CMAKE_HOME +-for cmake in cmake-3.2.1 cmake-2.8.12.1 cmake-2.8.8 cmake-2.8.4 cmake-2.8.3 \ +- cmake-2.8.1 +-do +- cmake=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cmake +- if [ -r $cmake ] +- then +- export CMAKE_HOME=$cmake +- export CMAKE_ROOT=$cmake +- export PATH=$CMAKE_HOME/bin:$PATH +- break +- fi +-done +- + + #- ParaView version, automatically determine major version + #export ParaView_VERSION=3.12.0 +@@ -65,7 +50,7 @@ + #export ParaView_VERSION=4.4.0 + #export ParaView_VERSION=5.0.0 + #export ParaView_VERSION=5.0.1 +-export ParaView_VERSION=5.4.0 ++export ParaView_VERSION=$EBVERSIONPARAVIEW + export ParaView_MAJOR=detect + + +@@ -106,21 +91,15 @@ + paraviewInstDir=$WM_THIRD_PARTY_DIR/ParaView-$ParaView_VERSION + paraviewArchName=ParaView-$ParaView_VERSION + +-export ParaView_DIR=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$paraviewArchName ++export ParaView_DIR=$EBROOTPARAVIEW + + # Set paths if binaries or source are present + if [ -r $ParaView_DIR -o -r $paraviewInstDir ] + then + export ParaView_INCLUDE_DIR=$ParaView_DIR/include/paraview-$ParaView_MAJOR +- if [ ! -d $ParaView_INCLUDE_DIR -a -d $ParaView_DIR/include/paraview-3.0 ] +- then +- export ParaView_INCLUDE_DIR=$ParaView_DIR/include/paraview-3.0 +- fi + + ParaView_LIB_DIR=$ParaView_DIR/lib/paraview-$ParaView_MAJOR + +- export PATH=$ParaView_DIR/bin:$PATH +- export LD_LIBRARY_PATH=$ParaView_LIB_DIR:$LD_LIBRARY_PATH + export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-$ParaView_MAJOR + + if [ "$FOAM_VERBOSE" -a "$PS1" ] +@@ -132,17 +111,6 @@ + echo " PV_PLUGIN_PATH : $PV_PLUGIN_PATH" + fi + +- # Add in python libraries if required +- paraviewPython=$ParaView_DIR/Utilities/VTKPythonWrapping +- if [ -r $paraviewPython ] +- then +- if [ "$PYTHONPATH" ] +- then +- export PYTHONPATH=$PYTHONPATH:$paraviewPython:$ParaView_LIB_DIR +- else +- export PYTHONPATH=$paraviewPython:$ParaView_LIB_DIR +- fi +- fi + else + unset PV_PLUGIN_PATH + fi +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/scotch OpenFOAM-5.x-version-5.0/etc/config.sh/scotch +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/scotch 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/scotch 2017-09-05 13:02:34.818516000 +0200 +@@ -37,7 +37,7 @@ + # + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_6.0.3 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION ++export SCOTCH_VERSION=scotch_$EBVERSIONSCOTCH ++export SCOTCH_ARCH_PATH=$EBROOTSCOTCH + + #------------------------------------------------------------------------------ +diff -ru OpenFOAM-5.x-version-5.0.orig/etc/config.sh/settings OpenFOAM-5.x-version-5.0/etc/config.sh/settings +--- OpenFOAM-5.x-version-5.0.orig/etc/config.sh/settings 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/etc/config.sh/settings 2017-09-05 13:02:34.819666000 +0200 +@@ -61,11 +61,11 @@ + 64) + WM_ARCH=linux64 + export WM_COMPILER_LIB_ARCH=64 +- export WM_CC='gcc' +- export WM_CXX='g++' +- export WM_CFLAGS='-m64 -fPIC' +- export WM_CXXFLAGS='-m64 -fPIC -std=c++0x' +- export WM_LDFLAGS='-m64' ++ export WM_CC=$CC ++ export WM_CXX=$CXX ++ export WM_CFLAGS=$CFLAGS ++ export WM_CXXFLAGS=$CXXFLAGS ++ export WM_LDFLAGS=$LDFLAGS + ;; + *) + echo "Unknown WM_ARCH_OPTION '$WM_ARCH_OPTION', should be 32 or 64"\ +diff -ru OpenFOAM-5.x-version-5.0.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-5.x-version-5.0/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-5.x-version-5.0.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/src/parallel/decompose/ptscotchDecomp/Make/options 2017-09-05 13:29:35.759841000 +0200 +@@ -4,14 +4,7 @@ + EXE_INC = \ + $(PFLAGS) $(PINC) \ + -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ +- -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ARCH_PATH)/lib \ +- -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) \ +- -lptscotch \ +- -lptscotcherrexit \ +- -lscotch \ +- -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt +diff -ru OpenFOAM-5.x-version-5.0.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-5.x-version-5.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-5.x-version-5.0.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2017-09-05 13:02:34.826491000 +0200 +@@ -30,10 +30,11 @@ + #include "globalIndex.H" + #include "SubField.H" + ++#include ++ + extern "C" + { + #include +- #include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-5.x-version-5.0.orig/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-5.x-version-5.0/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-5.x-version-5.0.orig/src/parallel/decompose/scotchDecomp/Make/options 2017-07-25 18:43:40.000000000 +0200 ++++ OpenFOAM-5.x-version-5.0/src/parallel/decompose/scotchDecomp/Make/options 2017-09-05 13:30:10.051665000 +0200 +@@ -8,7 +8,6 @@ + EXE_INC = \ + $(PFLAGS) $(PINC) \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ -- GitLab From 761402e29f2891df3bd7d70923fcfc342b7ace4e Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Wed, 18 Oct 2017 12:22:10 +0200 Subject: [PATCH 748/845] version push for Python in foss/2017b --- .../p/Python/Python-3.6.3-foss-2017b.eb | 214 ++++++++++++++++++ 1 file changed, 214 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.6.3-foss-2017b.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.3-foss-2017b.eb b/easybuild/easyconfigs/p/Python/Python-3.6.3-foss-2017b.eb new file mode 100644 index 0000000000..d2a54f3c7d --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.6.3-foss-2017b.eb @@ -0,0 +1,214 @@ +name = 'Python' +version = '3.6.3' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['ab6193af1921b30f587b302fe385268510e80187ca83ca82d2bfe7ab544c6f91'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + ('GMP', '6.1.2'), + ('XZ', '5.2.3'), + ('libffi', '3.2.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated October 16th 2017 +exts_list = [ + ('setuptools', '36.6.0', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + 'checksums': [ + '62074589522a798da243f47348f38020d55b6c945652e2f2c09d3a96299812b7', # setuptools-36.6.0.zip + ], + }), + ('pip', '9.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + 'checksums': [ + '09f243e1a7b461f654c26a725fa373211bb7ff17a9300058b205c61658ca940d', # pip-9.0.1.tar.gz + ], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + 'checksums': [ + 'f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98', # nose-1.3.7.tar.gz + ], + }), + ('numpy', '1.13.3', { + 'patches': ['numpy-1.12.0-mkl.patch'], + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], + 'checksums': [ + '36ee86d5adbabc4fa2643a073f93d5504bdfed37a149a3a49f4dde259f35a750', # numpy-1.13.3.zip + 'f212296ed289eb1b4e3f703997499dee8a2cdd0af78b55e017477487b6377ca4', # numpy-1.12.0-mkl.patch + ], + }), + ('scipy', '0.19.1', { + 'source_tmpl': '%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], + 'checksums': [ + 'a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6', # scipy-0.19.1.tar.gz + ], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + 'checksums': [ + '3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3', # blist-1.3.6.tar.gz + ], + }), + ('mpi4py', '2.0.0', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + 'checksums': [ + '6543a05851a7aa1e6d165e673d422ba24e45c41e4221f0993fe1e5924a00cb81', # mpi4py-2.0.0.tar.gz + ], + }), + ('paycheck', '1.0.2', { + 'patches': ['paycheck-1.0.2_setup-open-README-utf8.patch'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'checksums': [ + '6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34', # paycheck-1.0.2.tar.gz + # paycheck-1.0.2_setup-open-README-utf8.patch + 'ceb7f08aebf016cdcd94ae41c1c76c8c120907f85cbfce240d3a112afb264d79', + ], + }), + ('pbr', '3.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + 'checksums': [ + '05f61c71aaefc02d8e37c0a3eeb9815ff526ea28b3b76324769e6158d7f95be1', # pbr-3.1.1.tar.gz + ], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + 'checksums': [ + '6aed02de03cba24efabcd600b30540140634fc06cfa603822d508d5361e9f799', # lockfile-0.12.2.tar.gz + ], + }), + ('Cython', '0.27.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], + 'checksums': [ + 'e6840a2ba2704f4ffb40e454c36f73aeb440a4005453ee8d7ff6a00d812ba176', # Cython-0.27.1.tar.gz + ], + }), + ('six', '1.11.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'checksums': [ + '70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9', # six-1.11.0.tar.gz + ], + }), + ('dateutil', '2.6.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'checksums': [ + '891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca', # python-dateutil-2.6.1.tar.gz + ], + }), + ('deap', '1.0.2', { + 'patches': ['deap-1.0.2_setup-open-README-utf8.patch'], + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'checksums': [ + 'c52bd32b8f0143db3a0b90f2b976c920b588638d6999ca0d038d8b1c07f7950b', # deap-1.0.2.post2.tar.gz + # deap-1.0.2_setup-open-README-utf8.patch + '39a3a08359321189a1b27a382eb309dfd4470cba9101997a6d527a2fd3a0ce93', + ], + }), + ('decorator', '4.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + 'checksums': [ + '7cb64d38cb8002971710c8899fbdfb859a23a364b7c99dab19d1f719c2ba16b5', # decorator-4.1.2.tar.gz + ], + }), + ('arff', '2.1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + 'checksums': [ + 'b8ef2c64ae5318f6884dc0e20b8491b0b1c96151a40077a479e0f57257cab817', # liac-arff-2.1.1.tar.gz + ], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['https://pypi.python.org/packages/source/p/pycrypto/'], + 'checksums': [ + 'f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c', # pycrypto-2.6.1.tar.gz + ], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + 'checksums': [ + '64cf1ee26d1cde3c73c6d7d107f835fed7c6a2904aef9eac223d57ad800c43fa', # ecdsa-0.13.tar.gz + ], + }), + ('cryptography', '2.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], + 'checksums': [ + '2699ed21e1f73dd1bdb7b0b22a517295de07809d535b23e200dd22166037fe6f', # cryptography-2.1.1.tar.gz + ], + }), + ('paramiko', '2.3.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + 'checksums': [ + 'fa6b4f5c9d88f27c60fd9578146ff24e99d4b9f63391ff1343305bfd766c4660', # paramiko-2.3.1.tar.gz + ], + }), + ('pyparsing', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'checksums': [ + '0832bcf47acd283788593e7a0f542407bd9550a55a8a8435214a1960e04bcb04', # pyparsing-2.2.0.tar.gz + ], + }), + ('netifaces', '0.10.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + 'checksums': [ + '0c4da523f36d36f1ef92ee183f2512f3ceb9a9d2a45f7d19cda5a42c6689ebe0', # netifaces-0.10.6.tar.gz + ], + }), + ('netaddr', '0.7.19', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + 'checksums': [ + '38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd', # netaddr-0.7.19.tar.gz + ], + }), + ('pandas', '0.20.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + 'checksums': [ + 'a777e07633d83d546c55706420179551c8e01075b53c497dcf8ae4036766bc66', # pandas-0.20.3.tar.gz + ], + }), + ('virtualenv', '15.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], + 'checksums': [ + '02f8102c2436bb03b3ee6dede1919d1dac8a427541652e5ec95171ec8adbc93a', # virtualenv-15.1.0.tar.gz + ], + }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + 'checksums': [ + '49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491', # docopt-0.6.2.tar.gz + ], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + 'checksums': [ + '7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085', # joblib-0.11.tar.gz + ], + }), +] + +moduleclass = 'lang' -- GitLab From c170b556be9b038c52164fdb7f2c035b6b1045fc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 12:38:34 +0200 Subject: [PATCH 749/845] adding easyconfigs: yaff-1.4.2-intel-2017b-Python-2.7.14.eb, molmod-1.4.3-intel-2017b-Python-2.7.14.eb, future-0.16.0-intel-2017b-Python-2.7.14.eb, h5py-2.7.1-intel-2017b-Python-2.7.14.eb --- ...future-0.16.0-intel-2017b-Python-2.7.14.eb | 23 +++++++++++++ .../h5py-2.7.1-intel-2017b-Python-2.7.14.eb | 33 +++++++++++++++++++ .../molmod-1.4.3-intel-2017b-Python-2.7.14.eb | 30 +++++++++++++++++ .../yaff-1.4.2-intel-2017b-Python-2.7.14.eb | 31 +++++++++++++++++ 4 files changed, 117 insertions(+) create mode 100644 easybuild/easyconfigs/f/future/future-0.16.0-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/y/yaff/yaff-1.4.2-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/f/future/future-0.16.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/f/future/future-0.16.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..2289eb549e --- /dev/null +++ b/easybuild/easyconfigs/f/future/future-0.16.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'future' +version = '0.16.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://python-future.org/' +description = "python-future is the missing compatibility layer between Python 2 and Python 3." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['e39ced1ab767b5936646cedba8bcce582398233d6a627067d4c6a454c90cfedb'] + +dependencies = [('Python', '2.7.14')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..6c9cc7e5b0 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'h5py' +version = '2.7.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['180a688311e826ff6ae6d3bda9b5c292b90b28787525ddfcb10a29d5ddcae2cc'] + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '2.7.14'), + ('HDF5', '1.10.1'), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..bc470c2981 --- /dev/null +++ b/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'molmod' +version = '1.4.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/molmod/' +description = "MolMod is a Python library with many compoments that are useful to write molecular modeling programs." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/molmod/molmod/releases/download/%(version)s'] +sources = [SOURCE_TAR_GZ] +#patches = ['molmod-1.1_ignore-errors-np-det.patch'] + +dependencies = [ + ('Python', '2.7.14'), + ('future', '0.16.0', versionsuffix), + ('matplotlib', '2.1.0', versionsuffix), +] + +runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc;" +runtest += "python setup.py build_ext -i; nosetests -v" + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/y/yaff/yaff-1.4.2-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/y/yaff/yaff-1.4.2-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..707ddbc6a4 --- /dev/null +++ b/easybuild/easyconfigs/y/yaff/yaff-1.4.2-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'yaff' +version = '1.4.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/yaff/' +description = """Yaff stands for 'Yet another force field'. It is a pythonic force-field code.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/molmod/yaff/releases/download/%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['f61a85dcbf375acb21d7540ad7a80850996315d5eca608cfe2d57867f6120710'] + +dependencies = [ + ('Python', '2.7.14'), + ('h5py', '2.7.1', versionsuffix), + ('molmod', '1.4.3', versionsuffix), +] + +options = {'modulename': name} +runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc; " +runtest += "python setup.py build_ext -i; nosetests -v" + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'chem' -- GitLab From 486325c03dc4a39bb231b58c87200a8a70a5c6ca Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 12:44:09 +0200 Subject: [PATCH 750/845] adding easyconfigs: QuickFF-2.2.0-intel-2017b-Python-2.7.14.eb --- ...QuickFF-2.2.0-intel-2017b-Python-2.7.14.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/q/QuickFF/QuickFF-2.2.0-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/q/QuickFF/QuickFF-2.2.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/q/QuickFF/QuickFF-2.2.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..ed9cfe055d --- /dev/null +++ b/easybuild/easyconfigs/q/QuickFF/QuickFF-2.2.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'QuickFF' +version = '2.2.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/QuickFF/' +description = """QuickFF is a Python package developed at the Center for +Molecular Modeling (CMM) to quickly derive accurate force fields from ab initio +calculations.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/molmod/QuickFF/archive/'] +sources = [SOURCE_TAR_GZ] +checksums = ['47444286fabcee52b97f2edf189a5fddf2a1061b44bd64b3e427e07b0408b227'] + +dependencies = [ + ('Python', '2.7.14'), + ('matplotlib', '2.1.0', versionsuffix), + ('molmod', '1.4.3', versionsuffix), + ('yaff', '1.4.2', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'], +} + +moduleclass = 'chem' -- GitLab From eda18d3d465fa7e0f09cf31158d925af083cbb12 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 12:45:35 +0200 Subject: [PATCH 751/845] add missing easyconfig for pkgconfig dep --- ...gconfig-1.2.2-intel-2017b-Python-2.7.14.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..7ba733a57b --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.2.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['3685ba02a9b72654a764b728b559f327e1dbd7dc6ebc310a1bd429666ee202aa'] + +dependencies = [ + ('Python', '2.7.14'), + ('pkg-config', '0.29.2'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' -- GitLab From 46a44e828df3e3c3cb3113932ad5b311e272f06b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 12:48:12 +0200 Subject: [PATCH 752/845] adding easyconfigs: Tensorflow-1.3.0-intel-2017b-Python-3.6.3.eb, protobuf-3.4.0-intel-2017b.eb, protobuf-python-3.4.0-intel-2017b-Python-3.6.3.eb --- ...f-python-3.4.0-intel-2017b-Python-3.6.3.eb | 30 ++++++++++++ .../p/protobuf/protobuf-3.4.0-intel-2017b.eb | 24 +++++++++ ...nsorflow-1.3.0-intel-2017b-Python-3.6.3.eb | 49 +++++++++++++++++++ 3 files changed, 103 insertions(+) create mode 100644 easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017b-Python-3.6.3.eb create mode 100644 easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017b.eb create mode 100755 easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..3a379fe4f7 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf-python/protobuf-python-3.4.0-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'protobuf-python' +version = '3.4.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/google/protobuf/' +description = """Python Protocol Buffers runtime library.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['f6600abeee3babfa18591961a0ff21e7db6a6d9ef82418a261ec4fee44ee6d44'] + +dependencies = [ + ('Python', '3.6.3'), + ('protobuf', version) +] + +start_dir = 'python' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +options = {'modulename': 'google.protobuf'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017b.eb b/easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017b.eb new file mode 100644 index 0000000000..705701b2b3 --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf/protobuf-3.4.0-intel-2017b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'protobuf' +version = '3.4.0' + +homepage = 'https://github.com/google/protobuf/' +description = """Google Protocol Buffers""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/'] +sources = [SOURCE_TAR_GZ] +checksums = ['f6600abeee3babfa18591961a0ff21e7db6a6d9ef82418a261ec4fee44ee6d44'] + +builddependencies = [('Autotools', '20170619')] + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': ['bin/protoc', 'lib/libprotobuf.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017b-Python-3.6.3.eb new file mode 100755 index 0000000000..c5ddfeb817 --- /dev/null +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.3.0-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,49 @@ +easyblock = 'Bundle' + +name = 'Tensorflow' +version = '1.3.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.tensorflow.org/' +description = "An open-source software library for Machine Intelligence" + +toolchain = {'name': 'intel', 'version': '2017b'} + +pymaj = '3' +pymin = '6' +pymajmin = pymaj + pymin + +dependencies = [ + ('Python', '%s.%s.3' % (pymaj, pymin)), + ('protobuf-python', '3.4.0', versionsuffix), +] + +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('backports.weakref', '1.0.post1', { + 'modulename': 'backports.weakref', + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.weakref'], + 'checksums': ['bc4170a29915f8b22c9e7c4939701859650f2eb84184aee80da329ac0b9825c2'], + }), + ('Tensorflow', '1.3.0', { + 'source_tmpl': 'tensorflow-%%(version)s-cp%(py)s-cp%(py)sm-manylinux1_x86_64.whl' % {'py': pymajmin}, + 'source_urls': ['https://pypi.python.org/packages/source/t/Tensorflow'], + 'unpack_sources': False, + 'use_pip': True, + 'checksums': ['a535a4a32aaaf5c59dc582ed472f321a86bf1786d17931c017c0ec7c8f1a1c02'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/tensorboard'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'lib' -- GitLab From 89b14636e3feded771fb36e6a85689ef613d766c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 12:49:20 +0200 Subject: [PATCH 753/845] adding easyconfigs: Horovod-0.9.10-intel-2017b-Python-3.6.3.eb --- ...Horovod-0.9.10-intel-2017b-Python-3.6.3.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/h/Horovod/Horovod-0.9.10-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/h/Horovod/Horovod-0.9.10-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/h/Horovod/Horovod-0.9.10-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..71814f5926 --- /dev/null +++ b/easybuild/easyconfigs/h/Horovod/Horovod-0.9.10-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'Horovod' +version = '0.9.10' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/uber/horovod' +description = "Horovod is a distributed training framework for TensorFlow." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['37c1e5efdb84fb33c770ca97eca883bd984ed91a84799653005a19ba366759b5'] + +dependencies = [ + ('Python', '3.6.3'), + ('Tensorflow', '1.3.0', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' -- GitLab From e2f36b6d0669e8e6736e085cb3f90e0735d57726 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 14:21:04 +0200 Subject: [PATCH 754/845] remove commented out patches line + add checksum for molmod 1.4.3 --- .../m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb index bc470c2981..a07b9b5a6c 100644 --- a/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/m/molmod/molmod-1.4.3-intel-2017b-Python-2.7.14.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2017b'} source_urls = ['https://github.com/molmod/molmod/releases/download/%(version)s'] sources = [SOURCE_TAR_GZ] -#patches = ['molmod-1.1_ignore-errors-np-det.patch'] +checksums = ['1f2c45cdae743fb073f2a353f8ccbf3b116b2f79fd66e85a892a14765ecb9f15'] dependencies = [ ('Python', '2.7.14'), -- GitLab From 41b6b2fe59f7e9b09f0069377c979ffc29b1caeb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 15:04:20 +0200 Subject: [PATCH 755/845] add missing extensions required by MultiQC, use networkx 1.11 since colormath requires by spectra doesn't support networkx 2.x yet --- .../MultiQC-1.2-intel-2017b-Python-2.7.14.eb | 63 +++++++++++++++++++ 1 file changed, 63 insertions(+) diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb index 44cd5036d2..2dc58cd97c 100644 --- a/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.2-intel-2017b-Python-2.7.14.eb @@ -53,6 +53,68 @@ exts_list = [ 'ddaa01a212cd6d641401cb01b605f4a4d9f37bfc93043d7f760ec70fb99ff9ff', # Jinja2-2.9.6.tar.gz ], }), + # networkx 1.x is required, spectra does not support networkx 2.x yet + # see also https://github.com/ewels/MultiQC/issues/592 + ('networkx', '1.11', { + 'source_urls': ['https://pypi.python.org/packages/source/n/networkx/'], + 'checksums': [ + '0d0e70e10dfb47601cbb3425a00e03e2a2e97477be6f80638fef91d54dd1e4b8', # networkx-1.11.tar.gz + ], + }), + ('colormath', '2.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/colormath/'], + 'checksums': [ + '003a2b2d9c1f43aa7d90addf1863fb2d822463c839b1166ae3092950792f9707', # colormath-2.1.1.tar.gz + ], + }), + ('spectra', '0.0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/s/spectra/'], + 'checksums': [ + '851b88c9c0bba84e0be1fce5b9c02a7b4ef139a2b3e590b0d082d679e19f0759', # spectra-0.0.8.tar.gz + ], + }), + ('certifi', '2017.7.27.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], + 'checksums': [ + '40523d2efb60523e113b44602298f0960e900388cf3bb6043f645cf57ea9e3f5', # certifi-2017.7.27.1.tar.gz + ], + }), + ('urllib3', '1.22', { + 'source_urls': ['https://pypi.python.org/packages/source/u/urllib3/'], + 'checksums': [ + 'cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f', # urllib3-1.22.tar.gz + ], + }), + ('chardet', '3.0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/c/chardet/'], + 'checksums': [ + '84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae', # chardet-3.0.4.tar.gz + ], + }), + ('requests', '2.18.4', { + 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], + 'checksums': [ + '9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e', # requests-2.18.4.tar.gz + ], + }), + ('Markdown', '2.6.9', { + 'source_urls': ['https://pypi.python.org/packages/source/M/Markdown/'], + 'checksums': [ + '73af797238b95768b3a9b6fe6270e250e5c09d988b8e5b223fd5efa4e06faf81', # Markdown-2.6.9.tar.gz + ], + }), + ('future', '0.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/f/future/'], + 'checksums': [ + 'e39ced1ab767b5936646cedba8bcce582398233d6a627067d4c6a454c90cfedb', # future-0.16.0.tar.gz + ], + }), + ('lzstring', '1.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lzstring/'], + 'checksums': [ + 'd54dd5a5f86837ccfc1343cc9f1cb0674d2d6ebd4b49f6408c35104f0a996cb4', # lzstring-1.0.3.tar.gz + ], + }), ('multiqc', version, { 'source_urls': ['https://pypi.python.org/packages/source/m/multiqc/'], 'checksums': [ @@ -67,6 +129,7 @@ sanity_check_paths = { 'files': ['bin/multiqc'], 'dirs': ['lib/python%(pyshortver)s/site-packages'], } +sanity_check_commands = ["multiqc --help"] modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} -- GitLab From a690ff4bd11f7a743e9c8dc2b36c5fa8aa2604ac Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Oct 2017 15:26:11 +0200 Subject: [PATCH 756/845] fix checksum for OpenFOAM 5.0 source tarball --- easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb index bbe4a4282f..0d7205d19c 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-5.0-intel-2017a.eb @@ -14,7 +14,7 @@ source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s.x/archive sources = ['version-%(version)s.tar.gz'] patches = ['OpenFOAM-%(version)s-cleanup.patch'] checksums = [ - '4bfd76f1a09748a5065c69b8a16928479206d6ac686b31e63b019643582c16b8', # version-5.0.tar.gz + '9057d6a8bb9fa18802881feba215215699065e0b3c5cdd0c0e84cb29c9916c89', # version-5.0.tar.gz '8ed6bfb8983d3a3777399ff4e9bc30f99b017fec2d93d3a738e91129c58731a9', # OpenFOAM-5.0-cleanup.patch ] -- GitLab From 31bd67dd15b11af1fd0f9fd80a041c6cb3523989 Mon Sep 17 00:00:00 2001 From: reedts Date: Thu, 19 Oct 2017 15:51:59 +0200 Subject: [PATCH 757/845] Updated ifort patch to fit new version --- .../i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb | 4 ++-- .../i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch | 11 +++++++++++ .../i/imkl/imkl-2018.0.128-iimpi-2017.09.eb | 2 -- 3 files changed, 13 insertions(+), 4 deletions(-) create mode 100644 easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch diff --git a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb index 61e6f081cb..04204a3b7b 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -12,11 +12,11 @@ sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tg checksums = [ '597718bf752a52e043675102c6c03971be5dd3400a2e849bc295094395beef89', # parallel_studio_xe_2018_composer_edition_for_fortran.tgz - '7241e492a5f7ba4e62e8106c97f585c2fd931e32886d886f7bf0a9020e421325', # ifort_2017_no_mpi_mic_dependency.patch + '64793f16491eb35b1c008eaacc348bff283a53f78ba766e5ece7878a38ae6064' # ifort_2017_no_mpi_mic_dependency.patch ] # remove dependency on intel-mpi-rt-mic -patches = ['ifort_2017_no_mpi_mic_dependency.patch'] +patches = ['ifort_2017.09_no_mpi_mic_dependency.patch'] gccver = '6.4.0' binutilsver = '2.28' diff --git a/easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch b/easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch new file mode 100644 index 0000000000..8e9b3c41bf --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch @@ -0,0 +1,11 @@ +--- pset/mediaconfig.xml.orig 2017-10-19 13:44:49.383480127 +0200 ++++ pset/mediaconfig.xml 2017-10-19 13:48:09.237258398 +0200 +@@ -888,7 +888,7 @@ + + ${COMPLIB_ROOT} + 1503574163037 +- ++ + Intel Fortran Compiler for Intel(R) 64 + Intel Fortran Compiler 18.0 + Intel Fortran Compiler for Intel(R) 64 diff --git a/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb b/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb index b131c80889..47aaeb732f 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb @@ -27,8 +27,6 @@ postinstallcmds = [ 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', - 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', - 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/' ] modextravars = { -- GitLab From 1c81961f99d8a8ec76cd9870e1c402aa74929679 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 10:43:40 +0200 Subject: [PATCH 758/845] {vis}[intel/2017a] ImageMagick v7.0.7-8 w/ JasPer 1.900.1 --- ...gick-7.0.7-8-intel-2017a-JasPer-1.900.1.eb | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.7-8-intel-2017a-JasPer-1.900.1.eb diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.7-8-intel-2017a-JasPer-1.900.1.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.7-8-intel-2017a-JasPer-1.900.1.eb new file mode 100644 index 0000000000..2f9a0cfa48 --- /dev/null +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.7-8-intel-2017a-JasPer-1.900.1.eb @@ -0,0 +1,44 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Ravi Tripathi +# Email: ravi89@uab.edu + +easyblock = 'ConfigureMake' + +name = 'ImageMagick' +version = '7.0.7-8' +jasper_ver = '1.900.1' +versionsuffix = '-JasPer-%s' % jasper_ver + +homepage = 'http://www.imagemagick.org/' +description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://www.imagemagick.org/download/releases/'] +checksums = ['8dbd544640bc074541f441c911e2b3b9045695083d2ccdc694ec9a62181e5823'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('X11', '20170314'), + ('Ghostscript', '9.21'), + ('JasPer', jasper_ver), + ('libjpeg-turbo', '1.5.1'), + ('LibTIFF', '4.0.7'), + ('LittleCMS', '2.8'), +] + +builddependencies = [ + ('pkg-config', '0.29.1'), +] + +configopts = "--with-gslib --with-x" + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'etc/%(name)s-%(version_major)s', 'include/%(name)s-%(version_major)s', 'lib', 'share'], +} + +modextravars = {'MAGICK_HOME': '%(installdir)s'} + +moduleclass = 'vis' -- GitLab From ddc2f7b7cbe70d66d3dcc747e4e77d826c271536 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 10:52:15 +0200 Subject: [PATCH 759/845] adding easyconfigs: Java-1.8.0_152.eb --- .../easyconfigs/j/Java/Java-1.8.0_152.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb new file mode 100644 index 0000000000..c5d5b54c5d --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb @@ -0,0 +1,20 @@ +name = 'Java' +version = '1.8.0_152' + +homepage = 'http://java.com/' + +description = """ + Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from +# http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] +checksums = ['218b3b340c3f6d05d940b817d0270dfe0cfd657a636bad074dcabe0c111961bf'] + +moduleclass = 'lang' -- GitLab From cd1a13f60e67ec18dc02da6d743ac5b3b2443fb5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 11:20:27 +0200 Subject: [PATCH 760/845] drop empty line, fix formatting for 'description' --- easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb index c5d5b54c5d..738ebc7500 100644 --- a/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_152.eb @@ -2,11 +2,8 @@ name = 'Java' version = '1.8.0_152' homepage = 'http://java.com/' - -description = """ - Java Platform, Standard Edition (Java SE) lets you develop and deploy - Java applications on desktops and servers. -""" +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -- GitLab From 056832cdfa376a6e4539d431ab8425af0100a4c7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 14:07:41 +0200 Subject: [PATCH 761/845] adding easyconfigs: BCFtools-1.6-intel-2017b.eb, HTSlib-1.6-intel-2017b.eb, cURL-7.56.0-GCCcore-6.4.0.eb --- .../b/BCFtools/BCFtools-1.6-intel-2017b.eb | 31 ++++++++++++ .../c/cURL/cURL-7.56.0-GCCcore-6.4.0.eb | 49 +++++++++++++++++++ .../h/HTSlib/HTSlib-1.6-intel-2017b.eb | 37 ++++++++++++++ 3 files changed, 117 insertions(+) create mode 100644 easybuild/easyconfigs/b/BCFtools/BCFtools-1.6-intel-2017b.eb create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.56.0-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/h/HTSlib/HTSlib-1.6-intel-2017b.eb diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.6-intel-2017b.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.6-intel-2017b.eb new file mode 100644 index 0000000000..cbdf8dce46 --- /dev/null +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.6-intel-2017b.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'BCFtools' +version = '1.6' + +homepage = 'http://www.htslib.org/' +description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. + BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence + variants""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982'] + +dependencies = [ + ('zlib', '1.2.11'), + ('HTSlib', '1.6'), + ('GSL', '2.4'), +] + +configopts = "--with-htslib=$EBROOTHTSLIB --enable-libgsl" + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], + 'dirs': ['libexec/bcftools'] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.56.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.56.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..ec4b3a0fbc --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.56.0-GCCcore-6.4.0.eb @@ -0,0 +1,49 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.56.0' + +homepage = 'http://curl.haxx.se' + +description = """ + libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, + LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. + libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP + form based upload, proxies, cookies, user+password authentication (Basic, + Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling + and more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://curl.haxx.se/download/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['f1bc17a7e5662dbd8d4029750a6dbdb72a55cf95826a270ab388b05075526104'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0f') +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +configopts = '--with-zlib' +# configopts += '--with-ssl=$EBROOTOPENSSL' + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.6-intel-2017b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.6-intel-2017b.eb new file mode 100644 index 0000000000..f86670f70c --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.6-intel-2017b.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# 1.4 modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.6' + +homepage = "http://www.htslib.org/" +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['9588be8be0c2390a87b7952d644e7a88bead2991b3468371347965f2e0504ccb'] + +# cURL added for S3 support +dependencies = [ + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.3'), + ('cURL', '7.56.0'), +] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 9359ef66056e7471d297f0f4fd01c8ec76b07a15 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 14:23:17 +0200 Subject: [PATCH 762/845] adding easyconfigs: InterProScan-5.26-65.0-intel-2017b.eb --- .../InterProScan-5.26-65.0-intel-2017b.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/i/InterProScan/InterProScan-5.26-65.0-intel-2017b.eb diff --git a/easybuild/easyconfigs/i/InterProScan/InterProScan-5.26-65.0-intel-2017b.eb b/easybuild/easyconfigs/i/InterProScan/InterProScan-5.26-65.0-intel-2017b.eb new file mode 100644 index 0000000000..76b2b69e13 --- /dev/null +++ b/easybuild/easyconfigs/i/InterProScan/InterProScan-5.26-65.0-intel-2017b.eb @@ -0,0 +1,45 @@ +easyblock = 'Tarball' + +name = 'InterProScan' +version = '5.26-65.0' + +homepage = 'http://www.ebi.ac.uk/interpro/' +description = """InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines + different protein signature recognition methods into one resource.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [ + 'http://ftp.ebi.ac.uk/pub/software/unix/iprscan/%(version_major)s/%(version)s/', + 'http://ftp.ebi.ac.uk/pub/software/unix/iprscan/%(version_major)s/data', +] +sources = [ + '%(namelower)s-%(version)s-64-bit.tar.gz', + # note: unpacked this is ~30GB, mostly 5 *.hmm files + # this data can also be provided in another location, which can be specified in interproscan.properties + # see https://github.com/ebi-pf-team/interproscan/wiki/HowToDownload#2-installing-panther-models + 'panther-data-12.0.tar.gz', +] +checksums = [ + '31b08c069d76a6a784ab6f7594935a9e5eae7ce01c5b0bbdf9b9beaa50c92ba4', # interproscan-5.26-65.0-64-bit.tar.gz + 'bb8dcaeb68876b5abe7842ae1d65eecf15c43a0baea6be9514339b487167be79', # panther-data-12.0.tar.gz +] + +dependencies = [ + ('Java', '1.8.0_152', '', True), + ('Perl', '5.26.0'), + ('libgd', '2.2.5'), + ('Python', '2.7.14'), +] + +postinstallcmds = ["cp -a %(builddir)s/panther %(installdir)s/data"] + +sanity_check_paths = { + 'files': ['interproscan-%(version_major)s.jar', 'interproscan.sh', 'interproscan.properties'], + 'dirs': ['bin', 'lib', 'data/panther/12.0'], +} + +# also include top install directory in $PATH, to make interproscan.sh available +modextrapaths = {'PATH': ''} + +moduleclass = 'bio' -- GitLab From 42b69ad33881fe94a8c0b12510c7dd56982f87a9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 14:26:24 +0200 Subject: [PATCH 763/845] adding easyconfigs: FFTW-3.3.6-intel-2017b.eb --- .../f/FFTW/FFTW-3.3.6-intel-2017b.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-intel-2017b.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-intel-2017b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-intel-2017b.eb new file mode 100644 index 0000000000..d2ce6c9a34 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.6-intel-2017b.eb @@ -0,0 +1,25 @@ +name = 'FFTW' +version = '3.3.6' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = ['fftw-%(version)s-pl2.tar.gz'] +checksums = ['927e481edbb32575397eb3d62535a856'] + +# no quad precision, requires GCC v4.6 or higher +# see also +# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html +with_quad_prec = False + +# compilation fails when configuring with --enable-avx-128-fma, Intel compilers do not support FMA4 instructions +use_fma4 = False + +runtest = 'check' + +moduleclass = 'numlib' -- GitLab From d47ae99fb826f8692466ee72c9b640367f6af6f5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 20 Oct 2017 15:00:55 +0200 Subject: [PATCH 764/845] add missing libgd easyconfig --- .../l/libgd/libgd-2.2.5-intel-2017b.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/l/libgd/libgd-2.2.5-intel-2017b.eb diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.5-intel-2017b.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.5-intel-2017b.eb new file mode 100644 index 0000000000..22b859dfe4 --- /dev/null +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.5-intel-2017b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libgd' +version = '2.2.5' + +homepage = 'https://libgd.github.io/' +description = "GD is an open source code library for the dynamic creation of images by programmers." + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/libgd/libgd/releases/download/gd-%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['a66111c9b4a04e818e9e2a37d7ae8d4aae0939a100a36b0ffb52c706a09074b5'] + +dependencies = [ + ('fontconfig', '2.12.4'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.32'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ["lib/libgd.a", "lib/libgd.%s" % SHLIB_EXT], + 'dirs': ["bin", "include"], +} + +moduleclass = 'lib' -- GitLab From 215aed3a10028a288500954fc31259eaae14b792 Mon Sep 17 00:00:00 2001 From: Davide Vanzo Date: Fri, 20 Oct 2017 10:08:43 -0500 Subject: [PATCH 765/845] Starting from v2.12.2, fontconfig needs gperf as buid dependency --- .../easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb index 74e751cff6..67fc5acb47 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.4-GCCcore-6.4.0.eb @@ -19,6 +19,7 @@ checksums = ['fd5a6a663f4c4a00e196523902626654dd0c4a78686cbc6e472f338e50fdf806'] builddependencies = [ ('binutils', '2.28'), + ('gperf', '3.1'), ] dependencies = [ -- GitLab From eb7a4197bc0f7396e6a8cfb36f5b335cc3bb76c5 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Mon, 23 Oct 2017 09:11:15 +0800 Subject: [PATCH 766/845] adding easyconfigs: netCDF-4.4.1.1-intel-2017b.eb, netCDF-Fortran-4.4.4-intel-2017b.eb --- .../netCDF-Fortran-4.4.4-intel-2017b.eb | 18 +++++++++++ .../n/netCDF/netCDF-4.4.1.1-intel-2017b.eb | 32 +++++++++++++++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017b.eb create mode 100644 easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017b.eb diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017b.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017b.eb new file mode 100644 index 0000000000..5cfb9a871d --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017b.eb @@ -0,0 +1,18 @@ +name = 'netCDF-Fortran' +version = '4.4.4' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/Unidata/netcdf-fortran/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['44b1986c427989604df9925dcdbf6c1a977e4ecbde6dd459114bca20bf5e9e67'] + +dependencies = [('netCDF', '4.4.1.1')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017b.eb new file mode 100644 index 0000000000..a832bbfc40 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017b.eb @@ -0,0 +1,32 @@ +name = 'netCDF' +version = '4.4.1.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['7f040a0542ed3f6d27f3002b074e509614e18d6c515b2005d1537fec01b24909'] + +dependencies = [ + ('HDF5', '1.10.1'), + ('cURL', '7.56.0'), +] + +builddependencies = [ + ('CMake', '3.9.4'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' -- GitLab From 2c62dbd9d31d8caa6149f5f3f82f2b88be5a58d7 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Mon, 23 Oct 2017 10:13:14 +0800 Subject: [PATCH 767/845] adding easyconfigs: libxc-3.0.0-intel-2017b.eb --- .../l/libxc/libxc-3.0.0-intel-2017b.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb new file mode 100644 index 0000000000..7adea41511 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '3.0.0' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +# Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +toolchainopts = {'lowopt': True, 'optarch': False} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' -- GitLab From 826b05076bdd34153d4398a1fb8536ad909530de Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Oct 2017 11:37:16 +0200 Subject: [PATCH 768/845] adding easyconfigs: Bowtie2-2.3.3.1-intel-2017b.eb, tbb-2018_U1-GCCcore-6.4.0.eb --- .../b/Bowtie2/Bowtie2-2.3.3.1-intel-2017b.eb | 36 +++++++++++++++++++ .../t/tbb/tbb-2018_U1-GCCcore-6.4.0.eb | 18 ++++++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.3.1-intel-2017b.eb create mode 100644 easybuild/easyconfigs/t/tbb/tbb-2018_U1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.3.1-intel-2017b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.3.1-intel-2017b.eb new file mode 100644 index 0000000000..ae41075a36 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.3.1-intel-2017b.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute +# Modified by: Kurt Lust, UAntwerp + +name = 'Bowtie2' +version = '2.3.3.1' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True, 'cstd': 'c++11'} + +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] +sources = ['%(namelower)s-%(version)s-source.zip'] +checksums = ['a60ade7fa5200ae1389f22e5cad3eca017027d3bc6af02c94f2dff85e88a6838'] + +dependencies = [('tbb', '2018_U1')] + +# disable warning on incompatible exception specification that is treated as an error +buildopts = "EXTRA_FLAGS='-wd809'" + +# to add script folder to path just uncomment this line +# modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2018_U1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/tbb/tbb-2018_U1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f468954da8 --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2018_U1-GCCcore-6.4.0.eb @@ -0,0 +1,18 @@ +name = 'tbb' +version = '2018_U1' + +homepage = 'https://01.org/tbb/' +description = """Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that + take full advantage of multicore performance, that are portable, composable and have future-proof scalability.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/01org/tbb/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['c6462217d4ecef2b44fce63cfdf31f9db4f6ff493869899d497a5aef68b05fc5'] + +builddependencies = [ + ('binutils', '2.28') +] + +moduleclass = 'lib' -- GitLab From c18dc4bdf2dd0f721bcd17dbbc07c9da39432107 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Oct 2017 11:43:07 +0200 Subject: [PATCH 769/845] adding easyconfigs: Bismark-0.19.0-intel-2017b.eb --- .../b/Bismark/Bismark-0.19.0-intel-2017b.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bismark/Bismark-0.19.0-intel-2017b.eb diff --git a/easybuild/easyconfigs/b/Bismark/Bismark-0.19.0-intel-2017b.eb b/easybuild/easyconfigs/b/Bismark/Bismark-0.19.0-intel-2017b.eb new file mode 100644 index 0000000000..00de403e24 --- /dev/null +++ b/easybuild/easyconfigs/b/Bismark/Bismark-0.19.0-intel-2017b.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2013-2014 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'Tarball' + +name = 'Bismark' +version = '0.19.0' + +homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/bismark/' +description = "A tool to map bisulfite converted sequence reads and determine cytosine methylation states" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/bismark/'] +sources = ['%(namelower)s_v%(version)s.tar.gz'] +checksums = ['8256af138d8f65324f98aab23e552076333bf4671ff010078b9d83c9369d560d'] + +dependencies = [ + ('Perl', '5.26.0'), + ('Bowtie2', '2.3.3.1'), + ('SAMtools', '1.6'), +] + +sanity_check_paths = { + 'files': ['bismark', 'bismark2bedGraph', 'bismark2report', 'bismark_genome_preparation', + 'bismark_methylation_extractor', 'coverage2cytosine', 'deduplicate_bismark'], + 'dirs': [], +} + +modextrapaths = {'PATH': ''} + +moduleclass = 'bio' -- GitLab From 6ca91dc9eed0777df573e2bff7ab7fa7553853af Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Oct 2017 13:39:02 +0200 Subject: [PATCH 770/845] adding easyconfigs: netCDF-Fortran-4.4.4-foss-2017b.eb, netCDF-4.4.1.1-foss-2017b.eb --- .../netCDF-Fortran-4.4.4-foss-2017b.eb | 18 +++++++++++ .../n/netCDF/netCDF-4.4.1.1-foss-2017b.eb | 32 +++++++++++++++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-foss-2017b.eb create mode 100644 easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017b.eb diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-foss-2017b.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-foss-2017b.eb new file mode 100644 index 0000000000..f936b4f0ec --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-foss-2017b.eb @@ -0,0 +1,18 @@ +name = 'netCDF-Fortran' +version = '4.4.4' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/Unidata/netcdf-fortran/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['44b1986c427989604df9925dcdbf6c1a977e4ecbde6dd459114bca20bf5e9e67'] + +dependencies = [('netCDF', '4.4.1.1')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017b.eb new file mode 100644 index 0000000000..251f9a5589 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-foss-2017b.eb @@ -0,0 +1,32 @@ +name = 'netCDF' +version = '4.4.1.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['7f040a0542ed3f6d27f3002b074e509614e18d6c515b2005d1537fec01b24909'] + +dependencies = [ + ('HDF5', '1.10.1'), + ('cURL', '7.56.0'), +] + +builddependencies = [ + ('CMake', '3.9.4'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' -- GitLab From ac9186fc8735879ee220b3e0da61cb60fecbbd2f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Oct 2017 13:40:39 +0200 Subject: [PATCH 771/845] adding easyconfigs: grib_api-1.24.0-foss-2017b.eb, JasPer-1.900.1-GCCcore-6.4.0.eb --- .../g/grib_api/grib_api-1.24.0-foss-2017b.eb | 25 +++++++++++++++++++ .../j/JasPer/JasPer-1.900.1-GCCcore-6.4.0.eb | 23 +++++++++++++++++ 2 files changed, 48 insertions(+) create mode 100644 easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-foss-2017b.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-foss-2017b.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-foss-2017b.eb new file mode 100644 index 0000000000..6652f95260 --- /dev/null +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.24.0-foss-2017b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'grib_api' +version = '1.24.0' + +homepage = 'https://software.ecmwf.int/wiki/display/GRIB/Home' +description = """The ECMWF GRIB API is an application program interface accessible from C, FORTRAN and Python + programs developed for encoding and decoding WMO FM-92 GRIB edition 1 and edition 2 messages. A useful set of + command line tools is also provided to give quick access to GRIB messages.""" + +toolchain = {'name': 'foss', 'version': '2017b'} + +source_urls = ['https://software.ecmwf.int/wiki/download/attachments/3473437/'] +sources = ['grib_api-%(version)s-Source.tar.gz'] +checksums = ['6b0d443cb0802c5de652e5816c5b88734cb3ead454eb932c5ec12ef8d4f77bcd'] + +dependencies = [ + ('JasPer', '1.900.1'), # 2.x doesn't work +] + +configopts = '--with-jasper=$EBROOTJASPER' + +parallel = 1 + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..44a847457e --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-GCCcore-6.4.0.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +builddependencies = [('binutils', '2.28')] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' -- GitLab From e82ae7f3996809eb5a762b5f6e099fb84f51aabc Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 10:32:27 +0800 Subject: [PATCH 772/845] disable optarch and enable tests in all libxc-3.0.0 easyconfigs --- .../easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb | 9 ++------- .../libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 9 ++------- easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb | 9 ++------- easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb | 9 ++------- 4 files changed, 8 insertions(+), 28 deletions(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb index c3570aaed3..af35de65ce 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb @@ -9,19 +9,14 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True} +toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 5dad1c142c..127bed289f 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -9,19 +9,14 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True} +toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb index e96102336e..7bafa0c9f6 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb @@ -9,19 +9,14 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016a'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True} +toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb index df3c9b9484..76ff5d4fa5 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb @@ -9,19 +9,14 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016b'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True} +toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], -- GitLab From 428616a88f89ec1835c2d3482bb4d17b2393070b Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 10:50:25 +0800 Subject: [PATCH 773/845] no need to disable optarch with GCC --- easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb index af35de65ce..ddcdffe81d 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb @@ -9,7 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True, 'optarch': False} +toolchainopts = {'lowopt': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] -- GitLab From 4e1e2f9e10a112512a4f7a625d7753728bb1219c Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 11:28:57 +0800 Subject: [PATCH 774/845] disable optarch when using intel compilers and enable tests in all libxc-2.2.3 easyconfigs --- easybuild/easyconfigs/l/libxc/libxc-2.2.3-foss-2016b.eb | 7 +------ easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb | 9 ++------- easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb | 9 ++------- 3 files changed, 5 insertions(+), 20 deletions(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-foss-2016b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-foss-2016b.eb index 37456a8225..15d810d4e3 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-foss-2016b.eb @@ -16,12 +16,7 @@ source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb index 56fa742d7d..45a427ee67 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb @@ -9,19 +9,14 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016a'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True} +toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb index 0fb5faa09c..d6bb48cef5 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb @@ -9,19 +9,14 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016b'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. -toolchainopts = {'lowopt': True} +toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -# runtest = 'check' +runtest = 'check' sanity_check_paths = { 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], -- GitLab From 603fa0f584aab309f0a860cf1680281f3469367e Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 15:28:06 +0800 Subject: [PATCH 775/845] add comment on tests failing on Haswell with Intel Compilers when optarch is enabled --- easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb | 1 + easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb | 1 + 2 files changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb index 45a427ee67..8581c73845 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016a.eb @@ -9,6 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016a'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb index d6bb48cef5..0e0039008f 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2016b.eb @@ -9,6 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016b'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] -- GitLab From 5c5a1b9227a735c7dc2dce3ed122771f5a858217 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 15:29:29 +0800 Subject: [PATCH 776/845] add comment on tests failing on Haswell with Intel Compilers when optarch is enabled --- .../l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 1 + easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb | 1 + easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb | 1 + 3 files changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 127bed289f..af095f96e2 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -9,6 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb index 7bafa0c9f6..76f52361eb 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016a.eb @@ -9,6 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016a'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb index 76ff5d4fa5..a1af06b6f0 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2016b.eb @@ -9,6 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2016b'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] -- GitLab From 8d4a4f044f72086f327f38282a45ef7f03730170 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 15:30:53 +0800 Subject: [PATCH 777/845] add comment on tests failing on Haswell with Intel Compilers when optarch is enabled --- easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb index 7adea41511..87c23807f7 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb @@ -9,6 +9,7 @@ description = """Libxc is a library of exchange-correlation functionals for dens toolchain = {'name': 'intel', 'version': '2017b'} # Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] -- GitLab From 007008724afdeb063cf05b6932f9584ab40e8580 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 18:00:11 +0800 Subject: [PATCH 778/845] add easyconfig for libxc 2.2.3 --- .../l/libxc/libxc-2.2.3-intel-2017b.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb new file mode 100644 index 0000000000..75822500bb --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.3' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +# Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. +toolchainopts = {'lowopt': True, 'optarch': False} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="$F77 -E" --enable-shared' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' -- GitLab From 25b0147b1d829d72670775245d23601a30509284 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 18:18:40 +0800 Subject: [PATCH 779/845] fix easyconfig for libxc 2.2.3 --- easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb index 75822500bb..07d0c3bb14 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb @@ -15,12 +15,12 @@ toolchainopts = {'lowopt': True, 'optarch': False} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="$F77 -E" --enable-shared' +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], + 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], 'dirs': ['include'], } -- GitLab From e8a7099533fc337ae98e83949b58d1b0c97e3858 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 24 Oct 2017 18:42:22 +0800 Subject: [PATCH 780/845] add checksums --- easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb | 3 ++- easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb index 07d0c3bb14..e3637cdbef 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.3-intel-2017b.eb @@ -12,8 +12,9 @@ toolchain = {'name': 'intel', 'version': '2017b'} # Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} -sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] +sources = [SOURCE_TAR_GZ] +checksums = ['2f2b00b77a75c7fe8fe3f3ae70700cf28a09ff8d0ce791e47980ff7f9cde68e7'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb index 87c23807f7..57f024c00e 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-intel-2017b.eb @@ -12,8 +12,9 @@ toolchain = {'name': 'intel', 'version': '2017b'} # Tests also fail with Intel Compilers on Haswell when optarch is enabled. toolchainopts = {'lowopt': True, 'optarch': False} -sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] +sources = [SOURCE_TAR_GZ] +checksums = ['5542b99042c09b2925f2e3700d769cda4fb411b476d446c833ea28c6bfa8792a'] configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' -- GitLab From cc1e9764bbdba4d37ffe399dec6204c2dfa23c3c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Oct 2017 13:38:41 +0200 Subject: [PATCH 781/845] adding easyconfigs: libxc-4.0.1-intel-2017b.eb --- .../l/libxc/libxc-4.0.1-intel-2017b.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxc/libxc-4.0.1-intel-2017b.eb diff --git a/easybuild/easyconfigs/l/libxc/libxc-4.0.1-intel-2017b.eb b/easybuild/easyconfigs/l/libxc/libxc-4.0.1-intel-2017b.eb new file mode 100644 index 0000000000..ec366e6d84 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-4.0.1-intel-2017b.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '4.0.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +# Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +# Tests also fail with Intel Compilers on Haswell when optarch is enabled. +toolchainopts = {'lowopt': True, 'optarch': False} + +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['836cb2f529bb9d1979a347d4d5460bf9a18c64f39b8127e88f3004471a72ab30'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' -- GitLab From 888562ddda3147a193b9343d5fea0b97671b7fab Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Oct 2017 16:50:08 +0200 Subject: [PATCH 782/845] adding easyconfigs: Pysam-0.12.0.1-intel-2017b-Python-3.6.3.eb --- ...Pysam-0.12.0.1-intel-2017b-Python-3.6.3.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..6821372878 --- /dev/null +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 0.9.1.4: +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'PythonPackage' + +name = 'Pysam' +version = '0.12.0.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pysam-developers/pysam' +description = """Pysam is a python module for reading and manipulating Samfiles. + It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/pysam-developers/pysam/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['0abea22a0f97f8d355570062d4e5ab99784701ed01acf4bf6f617974b453256e'] + +dependencies = [ + ('Python', '3.6.3'), + ('ncurses', '6.0'), + ('cURL', '7.56.0'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' -- GitLab From 109ad51993b2ca367192af49ee734f8e366c105d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Oct 2017 16:54:05 +0200 Subject: [PATCH 783/845] adding easyconfigs: h5py-2.7.1-intel-2017b-Python-3.6.3.eb, pkgconfig-1.2.2-intel-2017b-Python-3.6.3.eb --- .../h5py-2.7.1-intel-2017b-Python-3.6.3.eb | 33 +++++++++++++++++++ ...kgconfig-1.2.2-intel-2017b-Python-3.6.3.eb | 27 +++++++++++++++ 2 files changed, 60 insertions(+) create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-3.6.3.eb create mode 100644 easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..beaf940257 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.1-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'h5py' +version = '2.7.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['180a688311e826ff6ae6d3bda9b5c292b90b28787525ddfcb10a29d5ddcae2cc'] + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '3.6.3'), + ('HDF5', '1.10.1'), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..8cb6b8d03b --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.2.2-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.2.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['3685ba02a9b72654a764b728b559f327e1dbd7dc6ebc310a1bd429666ee202aa'] + +dependencies = [ + ('Python', '3.6.3'), + ('pkg-config', '0.29.2'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' -- GitLab From 43cbbb9c792b90bc4679b2c554a5fc7326c4bc7b Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Wed, 25 Oct 2017 11:29:27 +0800 Subject: [PATCH 784/845] adding easyconfigs: DFTB+-17.1-intel-2017b-Python-2.7.14.eb, arpack-ng-3.5.0-intel-2017b.eb --- .../arpack-ng/arpack-ng-3.5.0-intel-2017b.eb | 25 ++++++++++ .../DFTB+-17.1-intel-2017b-Python-2.7.14.eb | 48 +++++++++++++++++++ 2 files changed, 73 insertions(+) create mode 100644 easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb create mode 100644 easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb new file mode 100644 index 0000000000..4f35c685be --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.5.0' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('Autotools', '20170619')] + +preconfigopts = "sh bootstrap && " +configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..9a97b449c6 --- /dev/null +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'DFTB+' +version = '17.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.dftb-plus.info' +description = """DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the + Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been + developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with + ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of + magnitude in speed.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +# some tests, e.g. spinorbit, fail with more aggressive optimization +toolchainopts = {'lowopt': True, 'optarch': False} + +source_urls = ['https://github.com/dftbplus/dftbplus/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['1c3d90418299f3c05e0adadf7c683b41f08600bea0ecde5edbd2206198d92a00'] + +dependencies = [ + ('Python', '2.7.14'), + ('arpack-ng', '3.5.0'), +] + +skipsteps = ['configure'] + +prebuildopts = "./utils/get_opt_externals dftd3 && ./utils/get_opt_externals slakos && " +prebuildopts += "cp sys/make.x86_64-linux-intel make.arch && " +prebuildopts += "sed -i 's|LNOPT = -static|LNOPT = -static-intel|' make.arch && " +prebuildopts += 'sed -i "s|-O2|$OPTFLAGS|g" make.arch && ' +prebuildopts += "sed -i 's|$(ROOT)/_install|%(installdir)s|' make.config && " + +# still fails but only because one test is not yet implemented +# runtest = 'test' + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': ['bin/' + prog for prog in ['dftb+', 'dp_bands', 'dp_dos', 'gen2cif', + 'gen2xyz', 'modes', 'waveplot', 'xyz2gen']], + 'dirs': ['lib/python%(pyshortver)s/site-packages/dptools'] +} + +sanity_check_commands = [('python', '-c "import dptools"')] + +moduleclass = 'phys' -- GitLab From 825be2bff5126f6996fabadfa945b08823c53c74 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Wed, 25 Oct 2017 18:59:51 +0800 Subject: [PATCH 785/845] enable tests, add checksum --- .../easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb | 1 + .../d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb | 7 ++++--- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb index 4f35c685be..23c72a7cf1 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017b.eb @@ -11,6 +11,7 @@ toolchainopts = {'pic': True, 'usempi': True} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] +checksums = ['50f7a3e3aec2e08e732a487919262238f8504c3ef927246ec3495617dde81239'] builddependencies = [('Autotools', '20170619')] diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb index 9a97b449c6..3f694d6a4b 100644 --- a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb @@ -28,19 +28,20 @@ skipsteps = ['configure'] prebuildopts = "./utils/get_opt_externals dftd3 && ./utils/get_opt_externals slakos && " prebuildopts += "cp sys/make.x86_64-linux-intel make.arch && " -prebuildopts += "sed -i 's|LNOPT = -static|LNOPT = -static-intel|' make.arch && " prebuildopts += 'sed -i "s|-O2|$OPTFLAGS|g" make.arch && ' prebuildopts += "sed -i 's|$(ROOT)/_install|%(installdir)s|' make.config && " +buildopts = "LNOPT='-static-intel'" + # still fails but only because one test is not yet implemented -# runtest = 'test' +runtest = 'test' modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} sanity_check_paths = { 'files': ['bin/' + prog for prog in ['dftb+', 'dp_bands', 'dp_dos', 'gen2cif', 'gen2xyz', 'modes', 'waveplot', 'xyz2gen']], - 'dirs': ['lib/python%(pyshortver)s/site-packages/dptools'] + 'dirs': ['lib/python%(pyshortver)s/site-packages'] } sanity_check_commands = [('python', '-c "import dptools"')] -- GitLab From 68897875db1cc51730bacd672c68b0d3664626da Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Oct 2017 15:36:59 +0200 Subject: [PATCH 786/845] adding easyconfigs: libxml2-2.9.6-GCCcore-6.4.0.eb --- .../l/libxml2/libxml2-2.9.6-GCCcore-6.4.0.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.6-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..c08596623c --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.6-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +name = 'libxml2' +version = '2.9.6' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['8b9038cca7240e881d462ea391882092dfdc6d4f483f72683e817be08df5ebbc'] + +builddependencies = [('binutils', '2.28')] + +dependencies = [ + ('zlib', '1.2.11'), + ('XZ', '5.2.3'), +] + +moduleclass = 'lib' -- GitLab From 43e8e4395c9d19c42178e41b9e2cd8188bcf4312 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Oct 2017 19:16:01 +0200 Subject: [PATCH 787/845] adding easyconfigs: pymatgen-2017.10.16-intel-2017b-Python-2.7.14.eb, spglib-python-1.10.0.2-intel-2017b-Python-2.7.14.eb --- ...en-2017.10.16-intel-2017b-Python-2.7.14.eb | 115 ++++++++++++++++++ ...thon-1.10.0.2-intel-2017b-Python-2.7.14.eb | 27 ++++ 2 files changed, 142 insertions(+) create mode 100644 easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..d1709244e2 --- /dev/null +++ b/easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,115 @@ +easyblock = 'Bundle' + +name = 'pymatgen' +version = '2017.10.16' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/pymatgen' +description = """Python Materials Genomics is a robust materials analysis code that defines core object + representations for structures and molecules with support for many electronic structure codes.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +dependencies = [ + ('Python', '2.7.14'), + ('PyYAML', '3.12', versionsuffix), + ('matplotlib', '2.1.0', versionsuffix), + ('spglib-python', '1.10.0.2', versionsuffix), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +exts_list = [ + ('click', '6.7', { + 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], + 'checksums': ['f15516df478d5a56180fbf80e68f206010e6d160fc39fa508b65e035fd75130b'], + }), + ('itsdangerous', '0.24', { + 'source_urls': ['https://pypi.python.org/packages/source/i/itsdangerous/'], + 'checksums': ['cbb3fcf8d3e33df861709ecaf89d9e6629cff0a217bc2848f1b41cd30d360519'], + }), + ('MarkupSafe', '1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/M/MarkupSafe/'], + 'checksums': ['a6be69091dac236ea9c6bc7d012beab42010fa914c459791d627dad4910eb665'], + }), + ('Jinja2', '2.9.6', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + 'checksums': ['ddaa01a212cd6d641401cb01b605f4a4d9f37bfc93043d7f760ec70fb99ff9ff'], + }), + ('Werkzeug', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/W/Werkzeug/'], + 'checksums': ['903a7b87b74635244548b30d30db4c8947fe64c5198f58899ddcd3a13c23bb26'], + }), + ('Flask', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/F/Flask/'], + 'checksums': ['49f44461237b69ecd901cc7ce66feea0319b9158743dd27a2899962ab214dac1'], + }), + ('monty', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/monty/'], + 'checksums': ['86d9686ff92f0e97fffc74bc9d91c68d2b904915fe7976ff8673bee6fa961b17'], + }), + ('mpmath', '1.0.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mpmath/'], + 'checksums': ['04d14803b6875fe6d69e6dccea87d5ae5599802e4b1df7997bddd2024001050c'], + }), + ('sympy', '1.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/sympy/'], + 'checksums': ['ac5b57691bc43919dcc21167660a57cc51797c28a4301a6144eff07b751216a4'], + }), + ('palettable', '3.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/palettable/'], + 'checksums': ['4c6f6531b93d97eb0bf4d707160626261de11470c47e2d017ac6bb569b5308aa'], + }), + ('tabulate', '0.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/t/tabulate/'], + 'checksums': ['b9b4d2fc712c1e3b8f2970edf6d83fd8a329d0148de78bbe2755a79a96c190fa'], + }), + ('PyDispatcher', '2.0.5', { + 'modulename': 'pydispatch', + 'source_urls': ['https://pypi.python.org/packages/source/P/PyDispatcher/'], + 'checksums': ['5570069e1b1769af1fe481de6dd1d3a388492acddd2cdad7a3bde145615d5caf'], + }), + ('ruamel.yaml', '0.15.34', { + 'source_urls': ['https://pypi.python.org/packages/source/r/ruamel.yaml/'], + 'use_pip': True, + 'checksums': ['f1e29054c6e477963e302b007b6cd1d6c7a58c38d78fabe64fde9ce170d2d1fd'], + }), + ('certifi', '2017.7.27.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], + 'checksums': ['40523d2efb60523e113b44602298f0960e900388cf3bb6043f645cf57ea9e3f5'], + }), + ('urllib3', '1.22', { + 'source_urls': ['https://pypi.python.org/packages/source/u/urllib3/'], + 'checksums': ['cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f'], + }), + ('chardet', '3.0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/c/chardet/'], + 'checksums': ['84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae'], + }), + ('requests', '2.18.4', { + 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], + 'checksums': ['9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e'], + }), + ('ruamel.ordereddict', '0.4.13', { + 'source_urls': ['https://pypi.python.org/packages/source/r/ruamel.ordereddict/'], + 'use_pip': True, + 'checksums': ['bf0a198c8ce5d973c24e5dba12d3abc254996788ca6ad8448eabc6aa710db149'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/p/pymatgen/'], + 'checksums': ['f05ce838c7fe9cc37aae85083f45bf9503eda1292aa1d778bfcd4b5b3018cb1b'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +sanity_check_paths = { + 'files': ['bin/pmg'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..8016c3d59e --- /dev/null +++ b/easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'spglib-python' +version = '1.10.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/spglib' +description = """Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://pypi.python.org/packages/source/%(nameletter)s/spglib'] +sources = ['spglib-%(version)s.tar.gz'] +checksums = ['225f3d36005c9a5c260c9fda20eaad887fbe58416d5f61fb1565ba6a935d4e98'] + +dependencies = [ + ('Python', '2.7.14'), +] + +options = {'modulename': 'spglib'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'chem' -- GitLab From e9ea8a03dbe608d1dff01717346339b21e7fc21b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Oct 2017 19:26:51 +0200 Subject: [PATCH 788/845] avoid downloads when installing matplotlib 2.1.0 w/ Python 2.7.14 --- ...matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb index ac4bb190d3..63ff6946ff 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-2.7.14.eb @@ -25,15 +25,19 @@ exts_list = [ 'modulename': 'cycler', 'source_tmpl': 'cycler-%(version)s.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], - 'checksums': [ - 'cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8', # cycler-0.10.0.tar.gz - ], + 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], + }), + ('subprocess32', '3.2.7', { + 'source_urls': ['https://pypi.python.org/packages/source/s/subprocess32'], + 'checksums': ['1e450a4a4c53bf197ad6402c564b9f7a53539385918ef8f12bdf430a61036590'], + }), + ('backports.functools_lru_cache', '1.4', { + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.functools_lru_cache'], + 'checksums': ['31f235852f88edc1558d428d890663c49eb4514ffec9f3650e7f3c9e4a12e36f'], }), (name, version, { 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], - 'checksums': [ - '4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387', # matplotlib-2.1.0.tar.gz - ], + 'checksums': ['4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387'], }), ] -- GitLab From 3b7bb9d1d91af40cc1f8b9132d1b072acdfcd9a2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Oct 2017 21:53:06 +0200 Subject: [PATCH 789/845] adding easyconfigs: pymatgen-2017.10.16-intel-2017b-Python-3.6.3.eb, spglib-python-1.10.0.2-intel-2017b-Python-3.6.3.eb, PyYAML-3.12-intel-2017b-Python-3.6.3.eb, matplotlib-2.1.0-intel-2017b-Python-3.6.3.eb --- ...tplotlib-2.1.0-intel-2017b-Python-3.6.3.eb | 46 ++++++++ .../PyYAML-3.12-intel-2017b-Python-3.6.3.eb | 28 +++++ ...gen-2017.10.16-intel-2017b-Python-3.6.3.eb | 110 ++++++++++++++++++ ...ython-1.10.0.2-intel-2017b-Python-3.6.3.eb | 27 +++++ 4 files changed, 211 insertions(+) create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-3.6.3.eb create mode 100644 easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-3.6.3.eb create mode 100644 easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-3.6.3.eb create mode 100644 easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..8003dd2e7e --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.1.0-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,46 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '3.6.3'), + ('libpng', '1.6.32'), + ('freetype', '2.8.1'), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_tmpl': 'cycler-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + 'checksums': ['4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..ea0e7706fd --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'PyYAML' +version = '3.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = "https://pypi.python.org/pypi/PyYAML/" +description = """PyYAML is a YAML parser and emitter for the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab'] + +dependencies = [ + ('Python', '3.6.3'), + ('libyaml', '0.1.7'), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..a6ee593987 --- /dev/null +++ b/easybuild/easyconfigs/p/pymatgen/pymatgen-2017.10.16-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,110 @@ +easyblock = 'Bundle' + +name = 'pymatgen' +version = '2017.10.16' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/pymatgen' +description = """Python Materials Genomics is a robust materials analysis code that defines core object + representations for structures and molecules with support for many electronic structure codes.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +dependencies = [ + ('Python', '3.6.3'), + ('PyYAML', '3.12', versionsuffix), + ('matplotlib', '2.1.0', versionsuffix), + ('spglib-python', '1.10.0.2', versionsuffix), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +exts_list = [ + ('click', '6.7', { + 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], + 'checksums': ['f15516df478d5a56180fbf80e68f206010e6d160fc39fa508b65e035fd75130b'], + }), + ('itsdangerous', '0.24', { + 'source_urls': ['https://pypi.python.org/packages/source/i/itsdangerous/'], + 'checksums': ['cbb3fcf8d3e33df861709ecaf89d9e6629cff0a217bc2848f1b41cd30d360519'], + }), + ('MarkupSafe', '1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/M/MarkupSafe/'], + 'checksums': ['a6be69091dac236ea9c6bc7d012beab42010fa914c459791d627dad4910eb665'], + }), + ('Jinja2', '2.9.6', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + 'checksums': ['ddaa01a212cd6d641401cb01b605f4a4d9f37bfc93043d7f760ec70fb99ff9ff'], + }), + ('Werkzeug', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/W/Werkzeug/'], + 'checksums': ['903a7b87b74635244548b30d30db4c8947fe64c5198f58899ddcd3a13c23bb26'], + }), + ('Flask', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/F/Flask/'], + 'checksums': ['49f44461237b69ecd901cc7ce66feea0319b9158743dd27a2899962ab214dac1'], + }), + ('monty', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/monty/'], + 'checksums': ['86d9686ff92f0e97fffc74bc9d91c68d2b904915fe7976ff8673bee6fa961b17'], + }), + ('mpmath', '1.0.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mpmath/'], + 'checksums': ['04d14803b6875fe6d69e6dccea87d5ae5599802e4b1df7997bddd2024001050c'], + }), + ('sympy', '1.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/sympy/'], + 'checksums': ['ac5b57691bc43919dcc21167660a57cc51797c28a4301a6144eff07b751216a4'], + }), + ('palettable', '3.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/palettable/'], + 'checksums': ['4c6f6531b93d97eb0bf4d707160626261de11470c47e2d017ac6bb569b5308aa'], + }), + ('tabulate', '0.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/t/tabulate/'], + 'checksums': ['b9b4d2fc712c1e3b8f2970edf6d83fd8a329d0148de78bbe2755a79a96c190fa'], + }), + ('PyDispatcher', '2.0.5', { + 'modulename': 'pydispatch', + 'source_urls': ['https://pypi.python.org/packages/source/P/PyDispatcher/'], + 'checksums': ['5570069e1b1769af1fe481de6dd1d3a388492acddd2cdad7a3bde145615d5caf'], + }), + ('ruamel.yaml', '0.15.34', { + 'source_urls': ['https://pypi.python.org/packages/source/r/ruamel.yaml/'], + 'use_pip': True, + 'checksums': ['f1e29054c6e477963e302b007b6cd1d6c7a58c38d78fabe64fde9ce170d2d1fd'], + }), + ('certifi', '2017.7.27.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], + 'checksums': ['40523d2efb60523e113b44602298f0960e900388cf3bb6043f645cf57ea9e3f5'], + }), + ('urllib3', '1.22', { + 'source_urls': ['https://pypi.python.org/packages/source/u/urllib3/'], + 'checksums': ['cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f'], + }), + ('chardet', '3.0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/c/chardet/'], + 'checksums': ['84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae'], + }), + ('requests', '2.18.4', { + 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], + 'checksums': ['9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/p/pymatgen/'], + 'checksums': ['f05ce838c7fe9cc37aae85083f45bf9503eda1292aa1d778bfcd4b5b3018cb1b'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +sanity_check_paths = { + 'files': ['bin/pmg'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..ad4e6b067f --- /dev/null +++ b/easybuild/easyconfigs/s/spglib-python/spglib-python-1.10.0.2-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'spglib-python' +version = '1.10.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/spglib' +description = """Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://pypi.python.org/packages/source/%(nameletter)s/spglib'] +sources = ['spglib-%(version)s.tar.gz'] +checksums = ['225f3d36005c9a5c260c9fda20eaad887fbe58416d5f61fb1565ba6a935d4e98'] + +dependencies = [ + ('Python', '3.6.3'), +] + +options = {'modulename': 'spglib'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'chem' -- GitLab From 4253cde13ca472937164569e609bdb7148041a55 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 10:45:24 +0200 Subject: [PATCH 790/845] adding easyconfigs: STAR-2.5.3a-intel-2017b.eb --- .../s/STAR/STAR-2.5.3a-intel-2017b.eb | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017b.eb diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017b.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017b.eb new file mode 100644 index 0000000000..1094079f36 --- /dev/null +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017b.eb @@ -0,0 +1,44 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# Modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'MakeCp' + +name = 'STAR' +version = '2.5.3a' + +homepage = 'https://github.com/alexdobin/STAR' +description = "STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays." + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/alexdobin/STAR/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['2a258e77cda103aa293e528f8597f25dc760cba188d0a7bc7c9452f4698e7c04'] + +dependencies = [ + ('zlib', '1.2.11'), +] + +start_dir = 'source' + +buildopts = ' STAR && make STARlong' + +parallel = 1 + +files_to_copy = [ + (['source/STAR', 'source/STARlong'], 'bin'), + 'CHANGES.md', 'doc', 'extras', 'LICENSE', 'README.md', 'RELEASEnotes.md', +] + +sanity_check_paths = { + 'files': ['bin/STAR', 'bin/STARlong'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 60312fd057389e42dde00cb4c40e9a53a33af2cd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 11:17:35 +0200 Subject: [PATCH 791/845] adding easyconfigs: Pysam-0.12.0.1-intel-2017b-Python-2.7.14.eb --- ...ysam-0.12.0.1-intel-2017b-Python-2.7.14.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..cad440271c --- /dev/null +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.12.0.1-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 0.9.1.4: +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'PythonPackage' + +name = 'Pysam' +version = '0.12.0.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pysam-developers/pysam' +description = """Pysam is a python module for reading and manipulating Samfiles. + It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/pysam-developers/pysam/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['0abea22a0f97f8d355570062d4e5ab99784701ed01acf4bf6f617974b453256e'] + +dependencies = [ + ('Python', '2.7.14'), + ('ncurses', '6.0'), + ('cURL', '7.56.0'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' -- GitLab From 3c1149bcd3b4c6cd984b0988dac220ba7dda8670 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 11:22:36 +0200 Subject: [PATCH 792/845] adding easyconfigs: ClustalW2-2.1-intel-2017b.eb --- .../c/ClustalW2/ClustalW2-2.1-intel-2017b.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb new file mode 100644 index 0000000000..f33ce922e1 --- /dev/null +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'ClustalW2' +version = '2.1' + +homepage = 'http://www.ebi.ac.uk/Tools/msa/clustalw2/' +description = """ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%s/%s' % (name.lower(), version)] +sources = ['%s-%%(version)s.tar.gz' % name[:-1].lower()] +checksums = ['e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486'] + +sanity_check_paths = { + 'files': ['bin/clustalw2'], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 667e1504849b4054677b6c6bca651e1bd949db80 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 11:09:27 +0200 Subject: [PATCH 793/845] fix $CPATH in recent libffi easyconfigs + enhance sanity check & add checksum --- easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.3-2.25.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-GCC-5.4.0-2.26.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.3.0.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb | 7 ++++--- .../easyconfigs/l/libffi/libffi-3.2.1-GNU-4.9.3-2.25.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015a.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015b.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-foss-2016.04.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016a.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016b.eb | 5 ++++- .../easyconfigs/l/libffi/libffi-3.2.1-gimkl-2.11.5.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015a.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015b.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb | 5 ++++- easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016b.eb | 5 ++++- 17 files changed, 68 insertions(+), 19 deletions(-) diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb index b980f40d3e..f5bf130cb1 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.3-2.25.eb index 7a3944e39b..8b5b44a14d 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.3-2.25.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-5.4.0-2.26.eb index 54836f2681..61ad36b41c 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-5.4.0-2.26.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb index c9f216298d..e7ef7172bd 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb @@ -14,12 +14,15 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] builddependencies = [('binutils', '2.26', '', True)] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.3.0.eb index ab5a66564f..5667085e95 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.3.0.eb @@ -14,6 +14,7 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] builddependencies = [ ('binutils', '2.27'), @@ -21,7 +22,9 @@ builddependencies = [ sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb index 35fa02052a..272b53cea5 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb @@ -26,9 +26,10 @@ builddependencies = [ ] sanity_check_paths = { - 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), - ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': ['lib', 'lib64'], + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GNU-4.9.3-2.25.eb index 81ba655d82..a7f7da72b1 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GNU-4.9.3-2.25.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015a.eb index 17a9f263e8..3a0a5abbc4 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015a.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015b.eb index d516d79d6d..5a6f644ab6 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2015b.eb @@ -14,10 +14,13 @@ source_urls = [ 'ftp://sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016.04.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016.04.eb index 37b990fbd3..167987ccc5 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016.04.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016.04.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016a.eb index c7c638b6fa..485bef7c44 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016a.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016b.eb index 14329b3867..df5037bc54 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-foss-2016b.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-gimkl-2.11.5.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-gimkl-2.11.5.eb index 7436f22a76..f8b23691f7 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-gimkl-2.11.5.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015a.eb index 385b07e0ea..17c245aeab 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015a.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015b.eb index ad6242ff95..d83e6976cf 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2015b.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb index 2096059a85..930e33d6be 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016b.eb index fc2b624589..3b03e94ec5 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016b.eb @@ -14,10 +14,13 @@ source_urls = [ 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', ] sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] sanity_check_paths = { 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], - 'dirs': [], + 'dirs': ['lib/libffi-%(version)s/include', 'share'], } +modextrapaths = {'CPATH': ['lib/libffi-%(version)s/include']} + moduleclass = 'lib' -- GitLab From f10631b70fa95c4bff02f9ac114d8c4257ccf6ec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 11:30:24 +0200 Subject: [PATCH 794/845] adding easyconfigs: BioPerl-1.7.2-intel-2017b-Perl-5.26.0.eb --- .../BioPerl-1.7.2-intel-2017b-Perl-5.26.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/b/BioPerl/BioPerl-1.7.2-intel-2017b-Perl-5.26.0.eb diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.7.2-intel-2017b-Perl-5.26.0.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.7.2-intel-2017b-Perl-5.26.0.eb new file mode 100644 index 0000000000..e5eae3e861 --- /dev/null +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.7.2-intel-2017b-Perl-5.26.0.eb @@ -0,0 +1,29 @@ +# easybuild easyconfig +# +# John Dey jfdey@fredhutch.org +# +# Fred Hutchinson Cancer Research Center + +easyblock = 'PerlModule' + +name = 'BioPerl' +version = '1.7.2' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://www.bioperl.org/' +description = """Bioperl is the product of a community effort to produce Perl code which is useful in biology. + Examples include Sequence objects, Alignment objects and database searching objects.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/bioperl/bioperl-live/archive/'] +sources = ['release-%s.zip' % version.replace('.', '-')] +checksums = ['cbed57a76751c724dce0706df144a3bbed8fa1b1c2d079783067ce58809952aa'] + +dependencies = [ + ('Perl', '5.26.0'), +] + +options = {'modulename': 'Bio::Perl'} + +moduleclass = 'bio' -- GitLab From 4f7e7474e5080dd4069f8cd3e576ab609859414e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 11:30:58 +0200 Subject: [PATCH 795/845] adding easyconfigs: Primer3-2.3.7-intel-2017b.eb --- .../p/Primer3/Primer3-2.3.7-intel-2017b.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/p/Primer3/Primer3-2.3.7-intel-2017b.eb diff --git a/easybuild/easyconfigs/p/Primer3/Primer3-2.3.7-intel-2017b.eb b/easybuild/easyconfigs/p/Primer3/Primer3-2.3.7-intel-2017b.eb new file mode 100644 index 0000000000..700041ce73 --- /dev/null +++ b/easybuild/easyconfigs/p/Primer3/Primer3-2.3.7-intel-2017b.eb @@ -0,0 +1,17 @@ +name = 'Primer3' +version = '2.3.7' + +homepage = 'http://primer3.sourceforge.net' +description = """Primer3 is a widely used program for designing PCR primers (PCR = 'Polymerase Chain Reaction'). + PCR is an essential and ubiquitous tool in genetics and molecular biology. + Primer3 can also design hybridization probes and sequencing primers.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['http://prdownloads.sourceforge.net/primer3'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['9e37a301d2ca9e5034c9a9d4afcb3e90041f6cc44c658b63598d0ccfcb176e5e'] + +runtest = 'test' + +moduleclass = 'bio' -- GitLab From 1e06b20b315f7a49cfd1b5af365a450fa5fdfd70 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 12:13:50 +0200 Subject: [PATCH 796/845] adding easyconfigs: BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb, Boost-1.63.0-intel-2017b-Python-2.7.14.eb --- .../BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb | 58 +++++++++++++++++++ .../Boost-1.63.0-intel-2017b-Python-2.7.14.eb | 28 +++++++++ 2 files changed, 86 insertions(+) create mode 100644 easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.63.0-intel-2017b-Python-2.7.14.eb diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..0ff5c91ddc --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,58 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = '2.6.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'cstd': 'c++14'} + +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +patches = [ + 'BLAST+-2.2.30_ictce-fixes.patch', + 'BLAST+-2.6.0_fix-make-install.patch', +] +checksums = [ + '0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996', # ncbi-blast-2.6.0+-src.tar.gz + '8892e8bc0b1020a2e8616594da364c63009839d0d2dc6faf4bae9c44122a78be', # BLAST+-2.2.30_ictce-fixes.patch +] + +dependencies = [ + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('PCRE', '8.41'), + ('Python', '2.7.14'), + ('Boost', '1.63.0', versionsuffix), # more recent Boost version doesn't work? + ('GMP', '6.1.2'), + ('libpng', '1.6.32'), + ('libjpeg-turbo', '1.5.2'), +] + +configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 --with-pcre=$EBROOTPCRE " +configopts += "--with-python=$EBROOTPYTHON --with-boost=$EBROOTBOOST --with-gmp=$EBROOTGMP --with-png=$EBROOTLIBPNG " +configopts += "--with-jpeg=$EBROOTLIBJPEGMINTURBO " + +sanity_check_paths = { + 'files': ['bin/blastn', 'bin/blastp', 'bin/blastx'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.63.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/b/Boost/Boost-1.63.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..8a7bb0510e --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.63.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,28 @@ +name = 'Boost' +version = '1.63.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = "Boost provides free peer-reviewed portable C++ source libraries." + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['https://sourceforge.net/projects/%(namelower)s/files/%(namelower)s/%(version)s'] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +patches = ['Boost-1.61_fix-make_array-icpc.patch'] +checksums = [ + 'fe34a4e119798e10b8cc9e565b3b0284e9fd3977ec8a1b19586ad1dec397088b', # boost_1_63_0.tar.gz + 'a02e9291eeb0bb35c1b2da94e96a4a6cb8b9055db37ab71a259179e680f11db0', # Boost-1.61_fix-make_array-icpc.patch +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('Python', '2.7.14'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From aee9b4a3bed712d44cf81a118075d418d286a264 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 14:13:44 +0200 Subject: [PATCH 797/845] use %(namelower)s & %(version)s templates in source_urls --- easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb index f33ce922e1..f9d70aeaf0 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-intel-2017b.eb @@ -21,7 +21,7 @@ description = """ClustalW2 is a general purpose multiple sequence alignment prog toolchain = {'name': 'intel', 'version': '2017b'} toolchainopts = {'pic': True} -source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%s/%s' % (name.lower(), version)] +source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%(namelower)s/%(version)s'] sources = ['%s-%%(version)s.tar.gz' % name[:-1].lower()] checksums = ['e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486'] -- GitLab From 6a1cfe36c6d3fa6f5baae0c5a1c57181f31df3fa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 15:30:57 +0200 Subject: [PATCH 798/845] add missing checksum --- .../b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb index 0ff5c91ddc..b0876ad9f6 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017b-Python-2.7.14.eb @@ -33,6 +33,7 @@ patches = [ checksums = [ '0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996', # ncbi-blast-2.6.0+-src.tar.gz '8892e8bc0b1020a2e8616594da364c63009839d0d2dc6faf4bae9c44122a78be', # BLAST+-2.2.30_ictce-fixes.patch + 'b3d53e8417406b866e470f1810bdc29649f2d58d7d9d39a466bc33c8c4ff37d1', # BLAST+-2.6.0_fix-make-install.patch ] dependencies = [ -- GitLab From 3c0208f6c63f4b4c2938466d0a994ec8fb842748 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Oct 2017 20:46:17 +0200 Subject: [PATCH 799/845] fix long line --- .../easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb index 04204a3b7b..55eab69a4f 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -11,8 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tgz'] checksums = [ - '597718bf752a52e043675102c6c03971be5dd3400a2e849bc295094395beef89', # parallel_studio_xe_2018_composer_edition_for_fortran.tgz - '64793f16491eb35b1c008eaacc348bff283a53f78ba766e5ece7878a38ae6064' # ifort_2017_no_mpi_mic_dependency.patch + # parallel_studio_xe_2018_composer_edition_for_fortran.tgz + '597718bf752a52e043675102c6c03971be5dd3400a2e849bc295094395beef89', + '64793f16491eb35b1c008eaacc348bff283a53f78ba766e5ece7878a38ae6064', # ifort_2017_no_mpi_mic_dependency.patch ] # remove dependency on intel-mpi-rt-mic -- GitLab From c51977718689e7ef0f5b4e6eaa85856895732a90 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Fri, 27 Oct 2017 15:13:55 +0800 Subject: [PATCH 800/845] patch failing dptools test, too strict --- .../d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb | 8 ++++++-- .../d/DFTB+/DFTB+-17.1_test_dptools.patch | 12 ++++++++++++ 2 files changed, 18 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb index 3f694d6a4b..922e3e83f7 100644 --- a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb @@ -17,7 +17,12 @@ toolchainopts = {'lowopt': True, 'optarch': False} source_urls = ['https://github.com/dftbplus/dftbplus/archive/'] sources = ['%(version)s.tar.gz'] -checksums = ['1c3d90418299f3c05e0adadf7c683b41f08600bea0ecde5edbd2206198d92a00'] +checksums = [ + '1c3d90418299f3c05e0adadf7c683b41f08600bea0ecde5edbd2206198d92a00', # 17.1.tar.gz + 'f55da6e66a7054c8ddc300a032dfd01158da66a9fbc22430a05f89f003626095', # DFTB+-17.1_test_dptools.patch +] + +patches = ['DFTB+-17.1_test_dptools.patch'] dependencies = [ ('Python', '2.7.14'), @@ -33,7 +38,6 @@ prebuildopts += "sed -i 's|$(ROOT)/_install|%(installdir)s|' make.config && " buildopts = "LNOPT='-static-intel'" -# still fails but only because one test is not yet implemented runtest = 'test' modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch new file mode 100644 index 0000000000..34f38faf1d --- /dev/null +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch @@ -0,0 +1,12 @@ +--- test/tools/dptools/test_grids.py.orig 2017-10-27 14:16:30.679276000 +0800 ++++ test/tools/dptools/test_grids.py 2017-10-27 14:17:28.896727649 +0800 +@@ -39,7 +39,8 @@ + ) + gridcoords = grid.cartesian_to_gridcoord([1.9, -0.5, 1.5]) + true_gridcoords = np.array([-1, 2, 9]) +- self.assertTrue(np.all(gridcoords == true_gridcoords)) ++ diff = np.max(np.abs(gridcoords - true_gridcoords)) ++ self.assertLess(diff, FLOAT_TOLERANCE) + + + def test_get_corners_gridcoord(self): -- GitLab From 31ffb03ef082c3d9ca3d1b22c174c40030877f02 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Fri, 27 Oct 2017 15:27:13 +0800 Subject: [PATCH 801/845] add description and author to patch --- .../easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb | 2 +- easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb index 922e3e83f7..f5fb5e3b15 100644 --- a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb @@ -19,7 +19,7 @@ source_urls = ['https://github.com/dftbplus/dftbplus/archive/'] sources = ['%(version)s.tar.gz'] checksums = [ '1c3d90418299f3c05e0adadf7c683b41f08600bea0ecde5edbd2206198d92a00', # 17.1.tar.gz - 'f55da6e66a7054c8ddc300a032dfd01158da66a9fbc22430a05f89f003626095', # DFTB+-17.1_test_dptools.patch + 'ffbd4721a8a01326be11ef780cb392265d05631fac144a9ae6e76aceae935e2b', # DFTB+-17.1_test_dptools.patch ] patches = ['DFTB+-17.1_test_dptools.patch'] diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch index 34f38faf1d..2c529c63ce 100644 --- a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1_test_dptools.patch @@ -1,3 +1,5 @@ +* relax test for exact match, compare difference with predefined tolerance instead +author: Miguel Dias Costa (National University of Singapore) --- test/tools/dptools/test_grids.py.orig 2017-10-27 14:16:30.679276000 +0800 +++ test/tools/dptools/test_grids.py 2017-10-27 14:17:28.896727649 +0800 @@ -39,7 +39,8 @@ -- GitLab From 71142356eb1676a897d32f384adabe3d6f514108 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Fri, 27 Oct 2017 17:57:27 +0800 Subject: [PATCH 802/845] style fix --- .../d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb index f5fb5e3b15..dfdfcfb4bd 100644 --- a/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb +++ b/easybuild/easyconfigs/d/DFTB+/DFTB+-17.1-intel-2017b-Python-2.7.14.eb @@ -17,13 +17,12 @@ toolchainopts = {'lowopt': True, 'optarch': False} source_urls = ['https://github.com/dftbplus/dftbplus/archive/'] sources = ['%(version)s.tar.gz'] +patches = ['DFTB+-%(version)s_test_dptools.patch'] checksums = [ '1c3d90418299f3c05e0adadf7c683b41f08600bea0ecde5edbd2206198d92a00', # 17.1.tar.gz 'ffbd4721a8a01326be11ef780cb392265d05631fac144a9ae6e76aceae935e2b', # DFTB+-17.1_test_dptools.patch ] -patches = ['DFTB+-17.1_test_dptools.patch'] - dependencies = [ ('Python', '2.7.14'), ('arpack-ng', '3.5.0'), -- GitLab From 18c75ae761327d8835822eeaf6eae5284a5902c2 Mon Sep 17 00:00:00 2001 From: reedts Date: Thu, 2 Nov 2017 12:38:48 +0100 Subject: [PATCH 803/845] adding easyconfigs: Python-2.7.14-GCCcore-6.4.0-bare.eb --- .../Python-2.7.14-GCCcore-6.4.0-bare.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.14-GCCcore-6.4.0-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.14-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.14-GCCcore-6.4.0-bare.eb new file mode 100644 index 0000000000..6e6d61b7ac --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.14-GCCcore-6.4.0-bare.eb @@ -0,0 +1,37 @@ +name = 'Python' +version = '2.7.14' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['304c9b202ea6fbd0a4a8e0ad3733715fbd4749f2204a9173a58ec53c32ea73e8'] + +# python needs bzip2 to build the bz2 package + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.20.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2l'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +exts_list = [] + +moduleclass = 'lang' -- GitLab From f03cf203a65eccaec6e91445cd0b6df74e42e0dc Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Fri, 3 Nov 2017 07:25:37 +0000 Subject: [PATCH 804/845] Use Github source and run autogen.sh --- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb index 7ce46ec76c..694b2bcc02 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb @@ -15,9 +15,11 @@ description = """ toolchain = {'name': 'GCCcore', 'version': '6.4.0'} toolchainopts = {'pic': True} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] -checksums = ['450c091235f891ee874a8651b179c30f57a1391ca5c4673354740ba65e527861'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] + +preconfigopts = [' ./autogen.sh && '] builddependencies = [ ('binutils', '2.28'), -- GitLab From d0f0352676bf183898034350d2d41164786ff7c4 Mon Sep 17 00:00:00 2001 From: reedts Date: Fri, 3 Nov 2017 11:20:06 +0100 Subject: [PATCH 805/845] adding easyconfigs: XML-Parser-2.44_01-GCCcore-6.4.0-Perl-5.26.0.eb --- ...arser-2.44_01-GCCcore-6.4.0-Perl-5.26.0.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.4.0-Perl-5.26.0.eb diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.4.0-Perl-5.26.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.4.0-Perl-5.26.0.eb new file mode 100644 index 0000000000..8ba7056762 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.44_01-GCCcore-6.4.0-Perl-5.26.0.eb @@ -0,0 +1,32 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.44_01' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] +checksums = ['5310ea5c8c707f387589bba8934ab9112463a452f828adf2755792d968b9ac7e'] + +builddependencies = [ + ('binutils', '2.28') +] + +dependencies = [ + ('Perl', '5.26.0'), + ('expat', '2.2.4') +] + +options = {'modulename': 'XML::Parser'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'], +} + +moduleclass = 'data' -- GitLab From 2b2b62a817111e45f80d68e5a7ca25e8ba7faa1e Mon Sep 17 00:00:00 2001 From: reedts Date: Fri, 3 Nov 2017 12:17:33 +0100 Subject: [PATCH 806/845] adding easyconfigs: GLib-2.53.5-GCCcore-6.4.0.eb --- .../g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..f9a77baa09 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.53.5' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = ['991421f41a4ed4cc1637e5f9db0d03fd236d2cbd19f3c5b097a343bec5126602'] + +builddependencies = [ + ('binutils', '2.28'), + ('Python', '2.7.14', '-bare'), +] +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.8.1'), + ('libxml2', '2.9.4'), + ('PCRE', '8.41'), + ('util-linux', '2.30'), +] + +# avoid using hardcoded path to Python binary in build step +preconfigopts = "export PYTHON=python && " + +configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --disable-systemtap " +configopts += "--enable-static --enable-shared" + +postinstallcmds = ["sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] + +sanity_check_paths = { + 'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'vis' -- GitLab From 884f2b53d312bb8c9e642de12af98e1b48bda398 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 3 Nov 2017 17:03:16 +0100 Subject: [PATCH 807/845] consistently fix source_urls for numactl v2.0.11 --- .../n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb | 7 ++++--- .../easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb | 9 +++++---- .../easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb | 9 +++++---- .../n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb | 9 +++++---- .../n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb | 9 +++++---- .../n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb | 9 +++++---- .../n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb | 9 +++++---- .../n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb | 6 ++---- .../easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb | 7 ++++--- .../n/numactl/numactl-2.0.11-gcccuda-2016.10.eb | 7 ++++--- .../numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb | 9 +++++---- .../numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 9 +++++---- .../easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb | 7 ++++--- .../easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb | 7 ++++--- 20 files changed, 86 insertions(+), 69 deletions(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb index cee677dd4c..9a1f8124eb 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb index a7dc26e7fe..e27ad1d0c2 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.11' -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCC', 'version': '4.9.3'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] + +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb index 2c6aa67bd4..95b9207ca4 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb @@ -10,10 +10,11 @@ The libnuma library provides convenient ways for you to add NUMA memory policies toolchain = {'name': 'GCC', 'version': '5.2.0'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb index d7d6d78efa..a901987769 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCC', 'version': '5.3.0-2.26'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb index 0c9f60c6e0..4f983fe20b 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb index b862023bd6..300c9a6a9b 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb @@ -10,10 +10,11 @@ The libnuma library provides convenient ways for you to add NUMA memory policies toolchain = {'name': 'GCC', 'version': '6.1.0-2.27'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb index 01a8bfdf0f..35242b4ec1 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb @@ -10,10 +10,11 @@ The libnuma library provides convenient ways for you to add NUMA memory policies toolchain = {'name': 'GCC', 'version': '6.2.0-2.27'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb index 7fe4d082b3..7a6239cc9c 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb @@ -10,10 +10,11 @@ The libnuma library provides convenient ways for you to add NUMA memory policies toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb index 49ba8f9bf3..b1ae21765e 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb @@ -10,13 +10,14 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCCcore', 'version': '4.9.2'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] builddependencies = [('binutils', '2.25')] +preconfigopts = "./autogen.sh && " + sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb index 91b7fa73b1..1ef423d5c3 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb @@ -10,13 +10,14 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCCcore', 'version': '4.9.3'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] builddependencies = [('binutils', '2.25')] +preconfigopts = "./autogen.sh && " + sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb index a7cf283740..8d58f739dc 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb @@ -10,13 +10,14 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCCcore', 'version': '5.3.0'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] builddependencies = [('binutils', '2.26')] +preconfigopts = "./autogen.sh && " + sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb index 61ae200dde..8a0edc8e18 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb @@ -10,13 +10,14 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCCcore', 'version': '5.4.0'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] builddependencies = [('binutils', '2.26')] +preconfigopts = "./autogen.sh && " + sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb index c6e873dfe1..68cc9650a9 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb @@ -10,13 +10,14 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCCcore', 'version': '6.3.0'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] builddependencies = [('binutils', '2.27')] +preconfigopts = "./autogen.sh && " + sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb index 694b2bcc02..21c805da15 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb @@ -19,11 +19,9 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -preconfigopts = [' ./autogen.sh && '] +builddependencies = [('binutils', '2.28')] -builddependencies = [ - ('binutils', '2.28'), -] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb index 8e5c5971f0..d059a1a756 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'foss', 'version': '2016a'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb index b6d4718450..172853f2cc 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'gcccuda', 'version': '2016.10'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index 61b226e7c4..1f00f8fcf6 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.11' -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-4.9.3-2.25'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] + +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index fb308c3df3..6135b14a65 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.11' -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] + +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb index 6379096747..4c10e7c606 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'intel', 'version': '2016a'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb index 0c6c854f4a..a7f32cbe3b 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb @@ -10,10 +10,11 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'intel', 'version': '2016b'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] +preconfigopts = "./autogen.sh && " sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], -- GitLab From bf6ebe6b1ee44801df0bb2dd6980c63a889ab03a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 3 Nov 2017 17:06:44 +0100 Subject: [PATCH 808/845] consistently fix source_urls for older numactl versions --- .../easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb | 7 +++---- .../easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 7 +++---- .../n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb | 7 +++---- .../n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb | 7 +++---- .../numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb | 7 +++---- .../easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb | 7 ++++--- .../easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb | 8 ++++---- .../easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb | 7 ++++--- 8 files changed, 27 insertions(+), 30 deletions(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb index dcc13adeaf..ee2e3f5180 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb @@ -10,10 +10,9 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCC', 'version': '4.8.4'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['682c38305b2596967881f3d77bc3fc9c'] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c52df9043bbf6edd4d31b1f9f2b2ca6a71cec7932bf4dc181fb7d6fda45b86f8'] builddependencies = [ ('Automake', '1.15'), diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index 31b7335ae5..9125fa6a9d 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.10' -checksums = ['682c38305b2596967881f3d77bc3fc9c'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,9 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GCC', 'version': '4.9.2'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c52df9043bbf6edd4d31b1f9f2b2ca6a71cec7932bf4dc181fb7d6fda45b86f8'] builddependencies = [ ('Automake', '1.15'), diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb index 727e24951e..79398f3153 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.10' -checksums = ['682c38305b2596967881f3d77bc3fc9c'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,9 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c52df9043bbf6edd4d31b1f9f2b2ca6a71cec7932bf4dc181fb7d6fda45b86f8'] builddependencies = [('Autotools', '20150215')] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb index eb1b29e032..a237801896 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.10' -checksums = ['682c38305b2596967881f3d77bc3fc9c'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,9 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c52df9043bbf6edd4d31b1f9f2b2ca6a71cec7932bf4dc181fb7d6fda45b86f8'] builddependencies = [('Autotools', '20150215')] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 1d4c3067fd..60c7650bda 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.10' -checksums = ['682c38305b2596967881f3d77bc3fc9c'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -12,8 +10,9 @@ description = """The numactl program allows you to run your application program toolchain = {'name': 'iccifort', 'version': '2015.3.187-GNU-4.9.3-2.25'} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c52df9043bbf6edd4d31b1f9f2b2ca6a71cec7932bf4dc181fb7d6fda45b86f8'] builddependencies = [('Autotools', '20150215', '', ('GNU', '4.9.3-2.25'))] diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb index fdf229d038..0b2580a80f 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb @@ -8,11 +8,12 @@ description = """The numactl program allows you to run your application program It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" -sources = [SOURCE_TAR_GZ] -source_urls = ["ftp://oss.sgi.com/www/projects/libnuma/download/"] - toolchain = {'name': 'goolf', 'version': '1.4.10'} +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c5ef2229ecf6162d6496cc174683b003d8b5014b4026c7a7cf139a80101a12a1'] + skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb index 53c7670b08..2188c58f07 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb @@ -8,12 +8,12 @@ description = """The numactl program allows you to run your application program It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" -sources = [SOURCE_TAR_GZ] -source_urls = ["ftp://oss.sgi.com/www/projects/libnuma/download/"] - - toolchain = {'name': 'ictce', 'version': '5.3.0'} +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['c5ef2229ecf6162d6496cc174683b003d8b5014b4026c7a7cf139a80101a12a1'] + skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb index d58d803fc7..d9de8075c2 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb @@ -8,11 +8,12 @@ description = """The numactl program allows you to run your application program It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" -sources = [SOURCE_TAR_GZ] -source_urls = ["ftp://oss.sgi.com/www/projects/libnuma/download/"] - toolchain = {'name': 'GCC', 'version': '4.8.3'} +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['3e893f41e601eac3100eefd659dbead8c75a89b9b73bc01c8387966181d9320c'] + skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" -- GitLab From 3e62e23dd91ede395879fa1e92db94045cafd6ee Mon Sep 17 00:00:00 2001 From: Davide Vanzo Date: Sat, 4 Nov 2017 11:25:50 -0500 Subject: [PATCH 809/845] adding easyconfigs: HPCG-3.0-foss-2016b.eb --- .../easyconfigs/h/HPCG/HPCG-3.0-foss-2016b.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPCG/HPCG-3.0-foss-2016b.eb diff --git a/easybuild/easyconfigs/h/HPCG/HPCG-3.0-foss-2016b.eb b/easybuild/easyconfigs/h/HPCG/HPCG-3.0-foss-2016b.eb new file mode 100644 index 0000000000..0d7425a83c --- /dev/null +++ b/easybuild/easyconfigs/h/HPCG/HPCG-3.0-foss-2016b.eb @@ -0,0 +1,17 @@ +name = 'HPCG' +version = '3.0' + +homepage = 'https://software.sandia.gov/hpcg' +description = """The HPCG Benchmark project is an effort to create a more relevant metric for ranking HPC systems than + the High Performance LINPACK (HPL) benchmark, that is currently used by the TOP500 benchmark.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True, 'openmp': True} + +source_urls = ['http://www.hpcg-benchmark.org/downloads'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e2b9bb6e0e83c3a707c27e92a6b087082e6d7033f94c000a40aebf2c05881519'] + +runtest = True + +moduleclass = 'math' -- GitLab From 04ea7f0eade827ea064829db4c4598fa3e417924 Mon Sep 17 00:00:00 2001 From: Davide Vanzo Date: Mon, 6 Nov 2017 07:53:26 -0600 Subject: [PATCH 810/845] numactl-2.0.11 - Add missing Automake and libtool deps --- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb index 8a0edc8e18..dcf9aed75a 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb @@ -14,7 +14,11 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -builddependencies = [('binutils', '2.26')] +builddependencies = [ + ('binutils', '2.26'), + ('Automake', '1.15'), + ('libtool', '2.4.6'), +] preconfigopts = "./autogen.sh && " -- GitLab From 530d438687d237adc2f9f102e015849c4eae3239 Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Mon, 6 Nov 2017 09:40:45 -0500 Subject: [PATCH 811/845] Update IntelClusterChecker-2017.1.016.eb update to sha256 checksum and remove new line between sources and checksum --- .../i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb index 037ff3b325..ad2da7d8fc 100644 --- a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb +++ b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb @@ -12,8 +12,7 @@ description = """Verifies cluster components work together ― for toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['l_clck_p_%(version)s.tgz'] - -checksums = ['84e7c00bf1f9b87e248dd62e4df7e3b7'] +checksums = ['7a89553dd0bce18d6c17b14f94d669ffeef8621e01b0a135292fb7ce71fc6e25'] dontcreateinstalldir = 'True' -- GitLab From 684b87eb6a63d0c5ab687d41dda18c316ca329b2 Mon Sep 17 00:00:00 2001 From: Shahzeb Siddiqui Date: Mon, 6 Nov 2017 10:03:06 -0500 Subject: [PATCH 812/845] update sha256 --- .../i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb index ad2da7d8fc..9e5fb6558f 100644 --- a/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb +++ b/easybuild/easyconfigs/i/IntelClusterChecker/IntelClusterChecker-2017.1.016.eb @@ -12,7 +12,7 @@ description = """Verifies cluster components work together ― for toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['l_clck_p_%(version)s.tgz'] -checksums = ['7a89553dd0bce18d6c17b14f94d669ffeef8621e01b0a135292fb7ce71fc6e25'] +checksums = ['72fcf16e220dfc1ee1e16a633381f7957e15b0b6f322f9954d1de2a1ec3851f1'] dontcreateinstalldir = 'True' -- GitLab From 4880eca85a186e59b537715b1e90f086e4667455 Mon Sep 17 00:00:00 2001 From: Davide Vanzo Date: Mon, 6 Nov 2017 09:03:37 -0600 Subject: [PATCH 813/845] Replaced Automake and libtool with Autotools --- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb index dcf9aed75a..9943c0237c 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.4.0.eb @@ -16,8 +16,7 @@ checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] builddependencies = [ ('binutils', '2.26'), - ('Automake', '1.15'), - ('libtool', '2.4.6'), + ('Autotools', '20150215'), ] preconfigopts = "./autogen.sh && " -- GitLab From d6e9398d917c4d4bd30d095c2527800d1441cd93 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 6 Nov 2017 19:23:35 +0100 Subject: [PATCH 814/845] {devel}[GCC/4.9.3,GCC/5.2.0,GCCcore/4.9.2,GCCcore/5.3.0,GCCcore/6.1.0,GCCcore/6.2.0] Autotools v20150215 --- .../a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb | 26 ++++++++++++++ .../a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb | 26 ++++++++++++++ .../a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb | 29 +++++++++++++++ .../a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb | 29 +++++++++++++++ .../a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb | 29 +++++++++++++++ .../a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb | 29 +++++++++++++++ .../a/Automake/Automake-1.15-GCC-4.9.3.eb | 33 +++++++++++++++++ .../a/Automake/Automake-1.15-GCC-5.2.0.eb | 33 +++++++++++++++++ .../a/Automake/Automake-1.15-GCCcore-4.9.2.eb | 36 +++++++++++++++++++ .../a/Automake/Automake-1.15-GCCcore-5.3.0.eb | 36 +++++++++++++++++++ .../a/Automake/Automake-1.15-GCCcore-6.1.0.eb | 36 +++++++++++++++++++ .../a/Automake/Automake-1.15-GCCcore-6.2.0.eb | 36 +++++++++++++++++++ .../Autotools/Autotools-20150215-GCC-4.9.3.eb | 18 ++++++++++ .../Autotools/Autotools-20150215-GCC-5.2.0.eb | 18 ++++++++++ .../Autotools-20150215-GCCcore-4.9.2.eb | 18 ++++++++++ .../Autotools-20150215-GCCcore-5.3.0.eb | 18 ++++++++++ .../Autotools-20150215-GCCcore-6.1.0.eb | 18 ++++++++++ .../Autotools-20150215-GCCcore-6.2.0.eb | 18 ++++++++++ .../l/libtool/libtool-2.4.6-GCC-4.9.3.eb | 17 +++++++++ .../l/libtool/libtool-2.4.6-GCC-5.2.0.eb | 17 +++++++++ .../l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb | 20 +++++++++++ .../l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb | 20 +++++++++++ .../l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb | 20 +++++++++++ .../l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb | 20 +++++++++++ .../easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb | 25 +++++++++++++ .../m/M4/M4-1.4.18-GCCcore-5.3.0.eb | 28 +++++++++++++++ 26 files changed, 653 insertions(+) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-5.2.0.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-4.9.2.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-5.3.0.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.1.0.eb create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.2.0.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb new file mode 100644 index 0000000000..fb917c94f3 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb new file mode 100644 index 0000000000..86ac70bf74 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '5.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb new file mode 100644 index 0000000000..cdc9454d5b --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCCcore', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.25', '', True)] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb new file mode 100644 index 0000000000..b4f6ec6daa --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCCcore', 'version': '5.3.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.18')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb new file mode 100644 index 0000000000..71be98623e --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCCcore', 'version': '6.1.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb new file mode 100644 index 0000000000..fd9a4854aa --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCCcore', 'version': '6.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb new file mode 100644 index 0000000000..8f360a86c3 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.9.3'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb new file mode 100644 index 0000000000..3ea3006386 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '5.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb new file mode 100644 index 0000000000..9bf5aa5fab --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.25', '', True)] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb new file mode 100644 index 0000000000..20921696bc --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '5.3.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb new file mode 100644 index 0000000000..ef1357da53 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '6.1.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb new file mode 100644 index 0000000000..913bdf78c4 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '6.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3.eb new file mode 100644 index 0000000000..5773bb94ce --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '4.9.3'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] +# Pure bundle -- no need to specify 'binutils' used when building GCCcore toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-5.2.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-5.2.0.eb new file mode 100644 index 0000000000..587dd10154 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-5.2.0.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '5.2.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] +# Pure bundle -- no need to specify 'binutils' used when building GCCcore toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-4.9.2.eb new file mode 100644 index 0000000000..311a4ee0f0 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-4.9.2.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCCcore', 'version': '4.9.2'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] +# Pure bundle -- no need to specify 'binutils' used when building GCCcore toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-5.3.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-5.3.0.eb new file mode 100644 index 0000000000..938921a173 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-5.3.0.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCCcore', 'version': '5.3.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] +# Pure bundle -- no need to specify 'binutils' used when building GCCcore toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.1.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.1.0.eb new file mode 100644 index 0000000000..528c29accf --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.1.0.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCCcore', 'version': '6.1.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] +# Pure bundle -- no need to specify 'binutils' used when building GCCcore toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.2.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.2.0.eb new file mode 100644 index 0000000000..dd53e00fee --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCCcore-6.2.0.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCCcore', 'version': '6.2.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] +# Pure bundle -- no need to specify 'binutils' used when building GCCcore toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb new file mode 100644 index 0000000000..f634eea5cd --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb new file mode 100644 index 0000000000..411e9a989b --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '5.2.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb new file mode 100644 index 0000000000..10764b43ff --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCCcore', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.25', '', True)] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb new file mode 100644 index 0000000000..fd2abf7889 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCCcore', 'version': '5.3.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.18')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.26', '', True)] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb new file mode 100644 index 0000000000..408a3c4ade --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCCcore', 'version': '6.1.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb new file mode 100644 index 0000000000..aa3742132a --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCCcore', 'version': '6.2.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.27', '', True)] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb new file mode 100644 index 0000000000..577ac72b0e --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCC', 'version': '5.2.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb new file mode 100644 index 0000000000..e1d4792492 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': '5.3.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.26', '', True)] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 3dfed0b544d87e8daade1a161922f5adc79af112 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 6 Nov 2017 19:26:44 +0100 Subject: [PATCH 815/845] consistently add Autotools as build dep for numactl 2.0.11 --- .../easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb | 5 ++++- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb | 5 ++++- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb | 5 ++++- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb | 5 ++++- .../easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb | 5 ++++- easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb | 2 ++ .../numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb | 2 ++ .../numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb | 2 ++ 19 files changed, 48 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb index 9a1f8124eb..246bc9fc30 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb index e27ad1d0c2..020ffc6e28 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb index 95b9207ca4..c7e7dbefce 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.2.0.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb index a901987769..fee19a7745 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.3.0-2.26.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb index 4f983fe20b..67c1728e6b 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-5.4.0-2.26.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb index 300c9a6a9b..7b9245687b 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.1.0-2.27.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb index 35242b4ec1..2429379140 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.2.0-2.27.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb index 7a6239cc9c..56b4cb1796 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb index b1ae21765e..c090b7a2c3 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.2.eb @@ -14,7 +14,10 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -builddependencies = [('binutils', '2.25')] +builddependencies = [ + ('binutils', '2.25'), + ('Autotools', '20150215'), +] preconfigopts = "./autogen.sh && " diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb index 1ef423d5c3..032b3964a4 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-4.9.3.eb @@ -14,7 +14,10 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -builddependencies = [('binutils', '2.25')] +builddependencies = [ + ('binutils', '2.25'), + ('Autotools', '20150215'), +] preconfigopts = "./autogen.sh && " diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb index 8d58f739dc..7244f5d0ea 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-5.3.0.eb @@ -14,7 +14,10 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -builddependencies = [('binutils', '2.26')] +builddependencies = [ + ('binutils', '2.26'), + ('Autotools', '20150215'), +] preconfigopts = "./autogen.sh && " diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb index 68cc9650a9..0ef676f5f1 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb @@ -14,7 +14,10 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -builddependencies = [('binutils', '2.27')] +builddependencies = [ + ('binutils', '2.27'), + ('Autotools', '20150215'), +] preconfigopts = "./autogen.sh && " diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb index 21c805da15..b97de8b83d 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb @@ -19,7 +19,10 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] -builddependencies = [('binutils', '2.28')] +builddependencies = [ + ('binutils', '2.28'), + ('Autotools', '20170619'), +] preconfigopts = "./autogen.sh && " diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb index d059a1a756..0475cfe87e 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-foss-2016a.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb index 172853f2cc..6cac91666f 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-gcccuda-2016.10.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index 1f00f8fcf6..ff3767c8d4 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 6135b14a65..720bebabf6 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb index 4c10e7c606..913162986c 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016a.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb index a7f32cbe3b..e30778b467 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-intel-2016b.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/numactl/numactl/archive/'] sources = ['v%(version)s.tar.gz'] checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] +builddependencies = [('Autotools', '20150215')] + preconfigopts = "./autogen.sh && " sanity_check_paths = { -- GitLab From ec89e222e7736bbbbe2ec8cc7b9f53aea3367714 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 6 Nov 2017 19:34:25 +0100 Subject: [PATCH 816/845] toolchain}[intel/2017.09] HPL v2.2 --- .../h/HPL/HPL-2.2-intel-2017.09.eb | 18 ++++++++++ .../i/icc/icc-2017.5.239-GCC-6.4.0-2.28.eb | 33 +++++++++++++++++ .../iccifort-2017.5.239-GCC-6.4.0-2.28.eb | 18 ++++++++++ .../ifort/ifort-2017.5.239-GCC-6.4.0-2.28.eb | 36 +++++++++++++++++++ .../easyconfigs/i/iimpi/iimpi-2017.09.eb | 20 +++++++++++ .../i/imkl/imkl-2017.4.239-iimpi-2017.09.eb | 34 ++++++++++++++++++ ....239-iccifort-2017.5.239-GCC-6.4.0-2.28.eb | 31 ++++++++++++++++ .../easyconfigs/i/intel/intel-2017.09.eb | 24 +++++++++++++ 8 files changed, 214 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb create mode 100644 easybuild/easyconfigs/i/icc/icc-2017.5.239-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2017.5.239-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2017.5.239-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-2017.4.239-iimpi-2017.09.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-2017.4.239-iccifort-2017.5.239-GCC-6.4.0-2.28.eb create mode 100644 easybuild/easyconfigs/i/intel/intel-2017.09.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb new file mode 100644 index 0000000000..2c1f012bb2 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.2' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) + arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available + implementation of the High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2017.09'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.5.239-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/icc/icc-2017.5.239-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..83e7ddb2e2 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2017.5.239-GCC-6.4.0-2.28.eb @@ -0,0 +1,33 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'icc' +version = '2017.5.239' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Intel C and C++ compilers" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] + +checksums = ['96c60896e4cac1c5c65ee3a1f9fafd2eee43b3944465ea8591468e708a86d184'] + +gccver = '6.4.0' +binutilsver = '2.28' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-ccomp', 'intel-icc', 'intel-openmp', 'intel-ipsc?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.5.239-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.5.239-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..f361d08058 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.5.239-GCC-6.4.0-2.28.eb @@ -0,0 +1,18 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild +easyblock = 'Toolchain' + +name = 'iccifort' +version = '2017.5.239' +versionsuffix = '-GCC-6.4.0-2.28' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = "Intel C, C++ & Fortran compilers" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.5.239-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.5.239-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..7673687015 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.5.239-GCC-6.4.0-2.28.eb @@ -0,0 +1,36 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'ifort' +version = '2017.5.239' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Intel Fortran compiler" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] + +checksums = ['671e08f50443272ab3885510766c38fc1da9aa109d37e435b2e663e5e46acf90'] + +# remove dependency on intel-mpi-rt-mic +patches = ['ifort_2017_no_mpi_mic_dependency.patch'] + +gccver = '6.4.0' +binutilsver = '2.28' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-fcomp', 'intel-ifort', 'intel-openmp', 'intel-ipsf?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb new file mode 100644 index 0000000000..908d5ed6b8 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb @@ -0,0 +1,20 @@ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ +easyblock = 'Toolchain' + +name = 'iimpi' +version = '2017.09' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2017.5.239' +compsuff = '-GCC-6.4.0-2.28' +dependencies = [ + ('icc', compver, compsuff), + ('ifort', compver, compsuff), + ('impi', '2017.4.239', '', ('iccifort', '%s%s' % (compver, compsuff))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.4.239-iimpi-2017.09.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.4.239-iimpi-2017.09.eb new file mode 100644 index 0000000000..17d55948d6 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.4.239-iimpi-2017.09.eb @@ -0,0 +1,34 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'imkl' +version = '2017.4.239' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library (MKL), a library of highly optimized, + extensively threaded math functions, including BLAS, (Sca)LAPACK, Fast Fourier Transforms (FFT), etc.""" + +toolchain = {'name': 'iimpi', 'version': '2017.09'} + +sources = ['l_mkl_%(version)s.tgz'] +checksums = ['dcac591ed1e95bd72357fd778edba215a7eab9c6993236373231cc16c200c92a'] + +dontcreateinstalldir = 'True' + +interfaces = True + +postinstallcmds = [ + # extract the examples + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', +] + +modextravars = { + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.4.239-iccifort-2017.5.239-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/impi/impi-2017.4.239-iccifort-2017.5.239-GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000..10b947e07d --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-2017.4.239-iccifort-2017.5.239-GCC-6.4.0-2.28.eb @@ -0,0 +1,31 @@ +# This is an easyconfig file for EasyBuild, see http://easybuilders.github.io/easybuild + +name = 'impi' +version = '2017.4.239' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = "Intel MPI Library, compatible with MPICH ABI" + +toolchain = {'name': 'iccifort', 'version': '2017.5.239-GCC-6.4.0-2.28'} + +sources = ['l_mpi_%(version)s.tgz'] + +checksums = ['5a1048d284dce8bc75b45789471c83c94b3c59f8f159cab43d783fc44302510b'] + +dontcreateinstalldir = 'True' + +components = ['intel-mpi', 'intel-psxe', 'intel-imb'] + +# set up all the mpi commands to default to intel compilers +# set_mpi_wrappers_all = 'True' + +postinstallcmds = [ + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpich.so', + 'ln -s %(installdir)s/lib64/libmpigc4.so %(installdir)s/lib64/libmpichcxx.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libfmpich.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libmpichf90.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpl.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libopa.so' +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2017.09.eb b/easybuild/easyconfigs/i/intel/intel-2017.09.eb new file mode 100644 index 0000000000..ca59f81413 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2017.09.eb @@ -0,0 +1,24 @@ +easyblock = 'Toolchain' + +name = 'intel' +version = '2017.09' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)." + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2017.5.239' +gccver = '6.4.0' +binutilsver = '2.28' +gccsuff = '-GCC-%s-%s' % (gccver, binutilsver) +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '-GCCcore-%s' % gccver), + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '2017.4.239', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '2017.4.239', '', ('iimpi', version)), +] + +moduleclass = 'toolchain' -- GitLab From a380d27f1782f694d56181eaffec5e1036e8e396 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 6 Nov 2017 20:22:53 +0100 Subject: [PATCH 817/845] add checksum to HPL 2.2 easyconfig using intel/2017.09 --- easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb index 2c1f012bb2..c5ef96c4ab 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb @@ -11,6 +11,7 @@ toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] +checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'] # fix Make dependencies, so parallel build also works patches = ['HPL_parallel-make.patch'] -- GitLab From 8a9304a168902fa4e93cc0980d8a556331289f46 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 6 Nov 2017 22:07:52 +0100 Subject: [PATCH 818/845] change version of intel toolchain that includes Intel compilers + impi/imkl 2018 (initial release) to 2018.00 --- .../HPL/{HPL-2.2-intel-2017.09.eb => HPL-2.2-intel-2018.00.eb} | 2 +- .../easyconfigs/i/iimpi/{iimpi-2017.09.eb => iimpi-2018.00.eb} | 2 +- ....0.128-iimpi-2017.09.eb => imkl-2018.0.128-iimpi-2018.00.eb} | 2 +- .../easyconfigs/i/intel/{intel-2017.09.eb => intel-2018.00.eb} | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/h/HPL/{HPL-2.2-intel-2017.09.eb => HPL-2.2-intel-2018.00.eb} (93%) rename easybuild/easyconfigs/i/iimpi/{iimpi-2017.09.eb => iimpi-2018.00.eb} (96%) rename easybuild/easyconfigs/i/imkl/{imkl-2018.0.128-iimpi-2017.09.eb => imkl-2018.0.128-iimpi-2018.00.eb} (96%) rename easybuild/easyconfigs/i/intel/{intel-2017.09.eb => intel-2018.00.eb} (97%) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2018.00.eb similarity index 93% rename from easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2018.00.eb index c5ef96c4ab..aaa4429877 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2017.09.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.2-intel-2018.00.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'intel', 'version': '2017.09'} +toolchain = {'name': 'intel', 'version': '2018.00'} toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2018.00.eb similarity index 96% rename from easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb rename to easybuild/easyconfigs/i/iimpi/iimpi-2018.00.eb index da9bb166af..9bbf335eba 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.09.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2018.00.eb @@ -2,7 +2,7 @@ easyblock = "Toolchain" name = 'iimpi' -version = '2017.09' +version = '2018.00' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" diff --git a/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb b/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2018.00.eb similarity index 96% rename from easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb rename to easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2018.00.eb index 47aaeb732f..938f4a92b3 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2017.09.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2018.0.128-iimpi-2018.00.eb @@ -9,7 +9,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'iimpi', 'version': '2017.09'} +toolchain = {'name': 'iimpi', 'version': '2018.00'} sources = ['l_mkl_%(version)s.tgz'] checksums = ['c368baa40ca88057292512534d7fad59fa24aef06da038ea0248e7cd1e280cec'] diff --git a/easybuild/easyconfigs/i/intel/intel-2017.09.eb b/easybuild/easyconfigs/i/intel/intel-2018.00.eb similarity index 97% rename from easybuild/easyconfigs/i/intel/intel-2017.09.eb rename to easybuild/easyconfigs/i/intel/intel-2018.00.eb index 7dd45a6875..81659fc519 100644 --- a/easybuild/easyconfigs/i/intel/intel-2017.09.eb +++ b/easybuild/easyconfigs/i/intel/intel-2018.00.eb @@ -1,7 +1,7 @@ easyblock = 'Toolchain' name = 'intel' -version = '2017.09' +version = '2018.00' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)." -- GitLab From 152969cf8e8e02e463501bcd7f7990253c63ebf8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 08:49:07 +0100 Subject: [PATCH 819/845] rename patch for ifort 2018.0.128 to avoid confusion --- .../easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb | 2 +- ..._dependency.patch => ifort_2018_no_mpi_mic_dependency.patch} | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/i/ifort/{ifort_2017.09_no_mpi_mic_dependency.patch => ifort_2018_no_mpi_mic_dependency.patch} (84%) diff --git a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb index 55eab69a4f..ac973c8b65 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -17,7 +17,7 @@ checksums = [ ] # remove dependency on intel-mpi-rt-mic -patches = ['ifort_2017.09_no_mpi_mic_dependency.patch'] +patches = ['ifort_2018_no_mpi_mic_dependency.patch'] gccver = '6.4.0' binutilsver = '2.28' diff --git a/easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch b/easybuild/easyconfigs/i/ifort/ifort_2018_no_mpi_mic_dependency.patch similarity index 84% rename from easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch rename to easybuild/easyconfigs/i/ifort/ifort_2018_no_mpi_mic_dependency.patch index 8e9b3c41bf..b2b41eab48 100644 --- a/easybuild/easyconfigs/i/ifort/ifort_2017.09_no_mpi_mic_dependency.patch +++ b/easybuild/easyconfigs/i/ifort/ifort_2018_no_mpi_mic_dependency.patch @@ -1,3 +1,5 @@ +Eliminate dependency on intel-mpi-rt-mic which in turn brings in intel-mpi-rt. +based on original patch by Bart Oldeman (McGill HPC) --- pset/mediaconfig.xml.orig 2017-10-19 13:44:49.383480127 +0200 +++ pset/mediaconfig.xml 2017-10-19 13:48:09.237258398 +0200 @@ -888,7 +888,7 @@ -- GitLab From 1ee630b4e6c88fb9c88dc30bcf8e9f62642942df Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 08:53:18 +0100 Subject: [PATCH 820/845] add SHA256 checksums in Automake easyconfigs --- .../easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb | 1 + .../easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb | 1 + .../easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb | 1 + .../easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb | 1 + .../easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb | 1 + .../easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb | 1 + .../a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb | 1 + .../a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb | 1 + easybuild/easyconfigs/a/Automake/Automake-1.15.eb | 1 + 41 files changed, 42 insertions(+) diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index d45cd6848d..857777923b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -20,6 +20,7 @@ description = "Automake: GNU Standards-compliant Makefile generator" source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['4c93abc0bff54b296f41f92dd3aa1e73e554265a6f719df465574983ef6f878c'] toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index 31955d8aed..01e8f72d2b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -20,6 +20,7 @@ description = "Automake: GNU Standards-compliant Makefile generator" source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['4c93abc0bff54b296f41f92dd3aa1e73e554265a6f719df465574983ef6f878c'] toolchain = {'name': 'ictce', 'version': '5.3.0'} diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb index 30d9cf6f3a..506b09d2da 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb @@ -16,6 +16,8 @@ description = "Automake: GNU Standards-compliant Makefile generator" source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['4c93abc0bff54b296f41f92dd3aa1e73e554265a6f719df465574983ef6f878c'] + toolchain = {'name': 'ictce', 'version': '5.5.0'} dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index 07a0d34525..b870e0e49a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7847424d4204d1627c129e9c15b81e145836afa2a1bf9003ffe10aa26ea75755'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 28155619ee..3ba6c9e28b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://ftp.gnu.org/gnu/automake'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7847424d4204d1627c129e9c15b81e145836afa2a1bf9003ffe10aa26ea75755'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index eb44e9f250..ab1112f57f 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['http://ftp.gnu.org/gnu/automake'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7847424d4204d1627c129e9c15b81e145836afa2a1bf9003ffe10aa26ea75755'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb index f6806921ee..05931fbba7 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7847424d4204d1627c129e9c15b81e145836afa2a1bf9003ffe10aa26ea75755'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index 8374474780..39f45940ec 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['814c2333f350ce00034a1fe718e0e4239998ceea7b0aff67e9fd273ed6dfc23b'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb index 9beb6f5545..d0bdf5ce33 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.7.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb index 661344dafe..f0fe1e048a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.4'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb index 5839e4ae64..7c92b98f67 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb index e5248806a5..f9456e2780 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb index 8f360a86c3..93877b0da8 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.3'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb index 3ea3006386..21217b92b3 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.2.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '5.2.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb index de29b041a3..1850bd252a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb index 9bf5aa5fab..38adcdbcb6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.2.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '4.9.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb index b5a5bec1bd..3b56561e8d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '4.9.3'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] builddependencies = [('binutils', '2.25')] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb index 20921696bc..3835b3463d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.3.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '5.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb index 1e6da1f343..ff70a116e5 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '5.4.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb index ef1357da53..945983f162 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.1.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.1.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb index 913bdf78c4..89b1911986 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.2.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.2.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb index e7a39e24d8..ef15fb7272 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb index 766349c4fd..e58e17b276 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb index d97b8a59c7..be935f8752 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb index 7cce783015..5fa0b4cce0 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb index 0c1ee484bc..71f728a244 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb index d06c3b5cb6..8105a92a8d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'foss', 'version': '2015b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb index 21d3b4aab0..4461580905 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016.04'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb index 65fc481bf4..ac34f15c49 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb index c72d3ad8d7..1d42fcae7c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb index 49bcde6b70..693d3ee2b7 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'gimkl', 'version': '2.11.5'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb index 3b84dabf7b..17832f07cd 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb index a8793fcf5f..79380a1031 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb index a3cddb527c..a5d90a232c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['http://ftp.gnu.org/gnu/automake'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb index 67f074a5f9..52bb62ffcc 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'intel', 'version': '2015b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb index c7071ba16e..8f5f433315 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb index 6ece7398d5..477fa282f9 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb index d3009f88e2..d561b8ba8c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb index 88bed3e485..290f8e7c44 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'iomkl', 'version': '2016.07'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb index 97cf835b9b..30cc36477f 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb index 49b03cdda9..4d0af0a11b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb @@ -22,6 +22,7 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['7946e945a96e28152ba5a6beb0625ca715c6e32ac55f2e353ef54def0c8ed924'] dependencies = [('Autoconf', '2.69')] -- GitLab From 4b95ec680bef340e21a721f846b233eb610f6d91 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 08:54:35 +0100 Subject: [PATCH 821/845] add SHA256 checksums in Autoconf easyconfigs --- easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.4.0-2.26.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.3.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.4.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.3.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.3-2.25.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-5.1.0-2.25.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015b.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016.04.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016b.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gimkl-2.11.5.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb | 1 + .../a/Autoconf/Autoconf-2.69-intel-2016.02-GCC-4.9.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016b.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.07.eb | 1 + .../a/Autoconf/Autoconf-2.69-iomkl-2016.09-GCC-4.9.3-2.25.eb | 1 + easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb | 1 + 35 files changed, 35 insertions(+) diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb index 552c3eb907..5787393eb8 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'GCC', 'version': '4.7.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb index 3a282506ef..bb29b475ec 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb index 2dc3403799..618c22f30f 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.4'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb index 51f5dfe227..a1b67dfbc2 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb index 1ea18e5a7c..83ec396231 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb index fb917c94f3..dd76e6fccd 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.3'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb index 86ac70bf74..bc76f5987e 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.2.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '5.2.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.4.0-2.26.eb index a3fab7ed38..6f8becb8f8 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-5.4.0-2.26.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb index cdc9454d5b..d2c6124a0a 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.2.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '4.9.2'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.3.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.3.eb index 8b7fb4793d..c695ecf637 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-4.9.3.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '4.9.3'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] builddependencies = [ ('binutils', '2.25') diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb index b4f6ec6daa..7d84000783 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.3.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '5.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.18')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.4.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.4.0.eb index 765fe6f2fd..b0b5d3dc35 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-5.4.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '5.4.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.18')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb index 71be98623e..47f11e88e4 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.1.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.1.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb index fd9a4854aa..0d4d4fbba3 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.2.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.2.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.3.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.3.0.eb index 84aebc0f8f..56c44c440e 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.3.0.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GCCcore', 'version': '6.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.18')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb index b57c1dcc83..8ffb16b0e0 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.3-2.25.eb index 90bf6609a6..6bb50603ac 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.3-2.25.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-5.1.0-2.25.eb index af0a90aedb..5bc17e8300 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-5.1.0-2.25.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb index 1001ba837c..56f5ed55a5 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015b.eb index 408f488eca..2a4df61070 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015b.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015b.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'foss', 'version': '2015b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016.04.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016.04.eb index 94bbfc01ec..610bad8fe2 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016.04.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016.04.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'foss', 'version': '2016.04'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb index 34de43acd4..d69292a1fe 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016b.eb index 4ddc61da69..24acba93f1 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016b.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016b.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gimkl-2.11.5.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gimkl-2.11.5.eb index 2a267fa96b..61ac85ee13 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gimkl-2.11.5.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'gimkl', 'version': '2.11.5'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb index 612bf18994..d7fbad6ae5 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb index 83e9b83ada..9bcd4d8021 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb index cf222c4c5e..c08fc8d2bf 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb index a3c280daab..c2d84c2ed3 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb index 801b643ac0..8467666de9 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'intel', 'version': '2015b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016.02-GCC-4.9.eb index e627b672b4..694c76a3dd 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016.02-GCC-4.9.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb index 9014da6c86..a088b7aa59 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'intel', 'version': '2016a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016b.eb index 439e6e5e51..240b4fc800 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016b.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016b.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.07.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.07.eb index 463a75eb42..d96d4b4f33 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.07.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'iomkl', 'version': '2016.07'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.09-GCC-4.9.3-2.25.eb index f88254bccf..65ceebaf8a 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb index 88f6a855ea..4f5b87c86e 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb @@ -14,6 +14,7 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] dependencies = [('M4', '1.4.17')] -- GitLab From 1e3a4a7195be8e5d5c8a4f6aa927f142bff8c2e8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 08:56:37 +0100 Subject: [PATCH 822/845] add SHA256 checksums in libtool easyconfigs --- easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.2.eb | 3 ++- .../easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb | 3 ++- .../easyconfigs/l/libtool/libtool-2.4.6-GCC-5.4.0-2.26.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.3.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.4.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.3.0.eb | 3 ++- .../easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb | 3 ++- .../easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb | 3 ++- .../easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015b.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016.04.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016b.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-gimkl-2.11.5.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.3.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015a.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb | 3 ++- .../l/libtool/libtool-2.4.6-intel-2016.02-GCC-4.9.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016b.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.07.eb | 3 ++- .../l/libtool/libtool-2.4.6-iomkl-2016.09-GCC-4.9.3-2.25.eb | 3 ++- easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb | 3 ++- 43 files changed, 86 insertions(+), 43 deletions(-) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb index aaf3b343c5..d773808ad9 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb @@ -8,7 +8,8 @@ description = """GNU libtool is a generic library support script. Libtool hides behind a consistent, portable interface.""" toolchain = {'name': 'GCC', 'version': '4.8.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb index a0d2e1edbd..e90403badc 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb @@ -9,7 +9,8 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb index d75220ff03..d6a0ea1fab 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb @@ -8,7 +8,8 @@ description = """GNU libtool is a generic library support script. Libtool hides behind a consistent, portable interface.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb index e54f9a35f1..4803ca5fcd 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb @@ -10,7 +10,8 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'ictce', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb index d66bc90859..bf6097a97b 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb @@ -9,7 +9,8 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'ictce', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb index 3ba9d4738d..97df934391 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb @@ -9,7 +9,8 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2014b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb index eddb4ada02..9ee482a3eb 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb @@ -9,7 +9,8 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b38de44862a987293cd3d8dfae1c409d514b6c4e794ebc93648febf9afc38918'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb index f1e3238f19..2ad8fdcecf 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb @@ -11,7 +11,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.4'} builddependencies = [('M4', '1.4.17')] -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['509cb49c7de14ce7eaf88993cf09fd4071882699dfd874c2e95b31ab107d6987'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb index 51c79ac40a..327df72604 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['509cb49c7de14ce7eaf88993cf09fd4071882699dfd874c2e95b31ab107d6987'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb index dd9022e00e..be43a3a172 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['509cb49c7de14ce7eaf88993cf09fd4071882699dfd874c2e95b31ab107d6987'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb index 81c5e4cf65..411e9ae71e 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.7.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb index e93fcc4049..a86c6cfba6 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.8.4'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.2.eb index 1846fcda7b..5cd8f4819f 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.2.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb index d4e8dd2add..8aa1590f5d 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb index f634eea5cd..aad38e568e 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.9.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb index 411e9a989b..460632d94d 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.2.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '5.2.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.4.0-2.26.eb index ba5556d8b5..c7bab72e73 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-5.4.0-2.26.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb index 10764b43ff..fdb971d5a6 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.2.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '4.9.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.3.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.3.eb index ae9366cdfd..d78d8e8648 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-4.9.3.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '4.9.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] builddependencies = [ ('binutils', '2.25') diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb index fd2abf7889..42794e4902 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.3.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.18')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.4.0.eb index 677b163091..e7ade18cd5 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-5.4.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '5.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.18')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb index 408a3c4ade..09f8321dfd 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.1.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '6.1.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb index aa3742132a..f8debfbbba 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.2.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '6.2.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.3.0.eb index 9e72961b6b..f22547e644 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.3.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCCcore', 'version': '6.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.18')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb index 6daa86f14e..a43779415a 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb index 7143101605..9bf276aa5e 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb index 290aa77f30..2099b16d9a 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb index d420dbd013..de820d7c5c 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'foss', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015b.eb index 83d12ef5f8..2bca609c01 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015b.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'foss', 'version': '2015b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016.04.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016.04.eb index bc63db0c69..7edd4990cb 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016.04.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016.04.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'foss', 'version': '2016.04'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb index d14a6fa24f..0037aacc7f 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'foss', 'version': '2016a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016b.eb index ea26f7eae7..b57ddb918f 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016b.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'foss', 'version': '2016b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-gimkl-2.11.5.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-gimkl-2.11.5.eb index 03bf53f395..c542d19f94 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-gimkl-2.11.5.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'gimkl', 'version': '2.11.5'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.3.0.eb index 1b3599b1ed..497c475c14 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.3.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'ictce', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb index cbd60cd24a..7f3367f2f3 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'ictce', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015a.eb index 32d19e0439..d84b7512b9 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015a.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb index f1364b279c..2488658b14 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2015b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016.02-GCC-4.9.eb index 857c0faabb..91a0b5cf1e 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016.02-GCC-4.9.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb index f2ac301f56..bd30a21a3a 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2016a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016b.eb index c877e8af5c..74e3de7c95 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016b.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'intel', 'version': '2016b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.07.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.07.eb index 436ada208a..ce9d216585 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.07.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'iomkl', 'version': '2016.07'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.09-GCC-4.9.3-2.25.eb index 8730994eeb..60ec25862a 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb index 3533b0aa04..27ff7d8fd5 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb @@ -9,8 +9,9 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'dummy', 'version': ''} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] dependencies = [('M4', '1.4.17')] -- GitLab From 9f08fd3827969a44c7443e05464210e266caa354 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 09:04:43 +0100 Subject: [PATCH 823/845] fix checksum for ifort 2018 patch --- .../easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb index ac973c8b65..6c675f6f17 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2018.0.128-GCC-6.4.0-2.28.eb @@ -13,7 +13,7 @@ sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tg checksums = [ # parallel_studio_xe_2018_composer_edition_for_fortran.tgz '597718bf752a52e043675102c6c03971be5dd3400a2e849bc295094395beef89', - '64793f16491eb35b1c008eaacc348bff283a53f78ba766e5ece7878a38ae6064', # ifort_2017_no_mpi_mic_dependency.patch + '8e5e7312c3cc8063b3ee24119f8a6d8fc8453d8f0fd0dc6b4638ded964d15ea5', # ifort_2018_no_mpi_mic_dependency.patch ] # remove dependency on intel-mpi-rt-mic -- GitLab From 2c1cf2cccc14601518a08c43cb8bb94157941de1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 09:05:14 +0100 Subject: [PATCH 824/845] add SHA256 checksums in M4 easyconfigs --- easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.4.0.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-6.1.5.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.16.eb | 7 +++++-- easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb | 3 ++- .../easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb | 3 ++- .../easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb | 3 ++- .../easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb | 3 ++- .../easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.07.eb | 3 ++- .../m/M4/M4-1.4.17-iomkl-2016.09-GCC-4.9.3-2.25.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb | 3 ++- easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb | 3 ++- 59 files changed, 157 insertions(+), 72 deletions(-) diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb index 9f33e2cf1a..dbd11c3b70 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'GCC', 'version': '4.6.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb index ac895a813e..a18ade6e1c 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'GCC', 'version': '4.7.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb index a3035c0940..1440cf34b9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'GCC', 'version': '4.7.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb index a4abda33a9..3dbe490514 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'GCC', 'version': '4.8.1'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb index 608f719296..def8ae20be 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb @@ -11,10 +11,13 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.8.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb index f3e91d0941..909d274463 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb index 0cb44a3cfb..1090e62519 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'goolf', 'version': '1.5.14'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb index c647012bf6..8cc0a1cdbb 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb @@ -11,10 +11,13 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.4.0.eb index ec0f3803df..fecbd5fc67 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.4.0.eb @@ -11,10 +11,13 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '5.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb index 9b71429dfd..4c6b9a85ba 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb @@ -10,10 +10,13 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-6.1.5.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-6.1.5.eb index 062e490de1..734b056533 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-6.1.5.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-6.1.5.eb @@ -11,10 +11,13 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '6.1.5'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb index 729b469bf9..b0e55f156e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb @@ -10,10 +10,13 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2014b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16.eb index 749164bc5e..807f402dd2 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16.eb @@ -12,10 +12,13 @@ GNU M4 also has built-in functions for including files, running shell commands, toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] - +sources = [SOURCELOWER_TAR_GZ] patches = ['M4-%(version)s-no-gets.patch'] +checksums = [ + 'e9176a35bb13a1b08482359aa554ee8072794f58f00e4827bf0e06b570c827da', # m4-1.4.16.tar.gz + '7c223ab254e9ba2d8ad5dc427889b5ad37304917c178ed541b8b95e24d9ee8d5', # M4-1.4.16-no-gets.patch +] configopts = "--enable-cxx" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb index 4811e3333a..603e869f55 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'CrayGNU', 'version': '2015.06'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb index 08c0165d80..e255af821e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'CrayGNU', 'version': '2015.11'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb index dfbd2123ff..626f978173 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.7.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb index 0c6c8895af..aa5a718301 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.8.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb index 4f5b6c32ba..b574e385bc 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.8.4'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb index 09ed58a2b9..caf242662a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.9.2-binutils-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.25', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb index 91e9fc5026..64c7ab2d72 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb index 18abbd3731..8e75c69dcc 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb index 675ca2e5f8..003f8d2107 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.9.3-binutils-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.25', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb index 49ea4854d5..e0a8a2ca3a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '4.9.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb index b86be0771d..09bc2edaf2 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '5.1.0-binutils-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.25', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb index 577ac72b0e..d528fe0daa 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.2.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '5.2.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb index cf9325ba99..110012202e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb index 7c607c059e..acca0180bb 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '4.9.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.25', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb index 25039d6e39..1873b7cdf0 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '4.9.3'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.25', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb index 697ed59231..5cc769e21d 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '4.9.4'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.25', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb index 9fd2f629f9..5e0e69cb9d 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.26', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb index 3ea2d5a8a5..310eaf5b8f 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '5.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.26', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb index dfbcc45466..3bff0fbd08 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '6.1.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCCcore builddependencies = [('binutils', '2.27', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb index a888ba53c1..e9a2e37848 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '6.2.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.27', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb index e74ca76bb2..baa776ff84 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb index 89d12d3ecc..9be34ccaf8 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb index b8a22e8dd1..d3e14dbc05 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb index 9f81198d34..b153419e6f 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2014b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb index abf727c78d..70dedd08c6 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2015.05'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb index 8a2f6a69b7..a3bf6260c1 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb index c94c57b0c9..fdc9d09776 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2015b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb index ac1d3f2336..44bdef0b8b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2016.04'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb index d6580cb3e9..81276c6d5b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2016a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb index 7121f7d172..3d0f08e8a5 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'foss', 'version': '2016b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb index 75de298f7a..48ecf0f7f0 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'gimkl', 'version': '2.11.5'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb index 0157f04741..934a5f132e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '5.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb index 740881ec34..b84fceed68 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '5.5.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb index e141025d05..a2decc18b6 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '7.1.2'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb index 39930debab..cb37df1bbc 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2014b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb index 0f8a70041c..f1747b70ba 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb index 0f22f64f82..6a95aece69 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2015b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb index aba40b2a53..08c3a2b826 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb index 308aa5a579..4c42135192 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2016a'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb index 4da8a15bac..092d7bc4db 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'intel', 'version': '2016b'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.07.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.07.eb index b6bbaa91c0..ab31b72b6b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.07.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'iomkl', 'version': '2016.07'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.09-GCC-4.9.3-2.25.eb index 2da711ec97..a05781f23c 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb index e1d4792492..65c8ebad07 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.3.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '5.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.26', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb index 34356fc1a7..cf8321cd1c 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '5.4.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.26', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb index ae199e4d28..d2c34787b3 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '6.3.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.27', '', True)] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb index 0c20559e8b..24bc157e06 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb @@ -10,8 +10,9 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'GCCcore', 'version': '7.1.0'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # use same binutils version that was used when building GCC toolchain builddependencies = [('binutils', '2.28', '', True)] -- GitLab From a3412d2278b736d44008f474e98adf9a01fd9d40 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 10:42:34 +0100 Subject: [PATCH 825/845] adding easyconfigs: piSvM-1.3-intel-2017b.eb --- .../p/piSvM/piSvM-1.3-intel-2017b.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/p/piSvM/piSvM-1.3-intel-2017b.eb diff --git a/easybuild/easyconfigs/p/piSvM/piSvM-1.3-intel-2017b.eb b/easybuild/easyconfigs/p/piSvM/piSvM-1.3-intel-2017b.eb new file mode 100644 index 0000000000..0b9a3fa434 --- /dev/null +++ b/easybuild/easyconfigs/p/piSvM/piSvM-1.3-intel-2017b.eb @@ -0,0 +1,26 @@ +easyblock = 'MakeCp' + +name = 'piSvM' +version = '1.3' + +homepage = 'http://pisvm.sourceforge.net/' +description = """piSvM is a parallel implementation of the Support Vector Machine (SVM) algorithm that allows + efficient training and testing on a multiprocessor system.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TGZ] +checksums = ['6fae03a804ea545eb76942fc386a4b3292b0312f23537965e1f9ee15ec0abdfa'] + +buildopts = 'CC="$CC" CXXC="$CXX" CFLAGS="$CFLAGS"' + +files_to_copy = [(['pisvm-predict', 'pisvm-train'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/pisvm-predict', 'bin/pisvm-train'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 3b9623ff9ee547ec387029ef78436453b0b98973 Mon Sep 17 00:00:00 2001 From: reedts Date: Tue, 7 Nov 2017 12:18:02 +0100 Subject: [PATCH 826/845] Bumped util-linux to version 2.31 --- .../g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb | 2 +- .../util-linux-2.31-GCCcore-6.4.0.eb | 43 +++++++++++++++++++ 2 files changed, 44 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.31-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb index f9a77baa09..28863a2474 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.53.5-GCCcore-6.4.0.eb @@ -22,7 +22,7 @@ dependencies = [ ('gettext', '0.19.8.1'), ('libxml2', '2.9.4'), ('PCRE', '8.41'), - ('util-linux', '2.30'), + ('util-linux', '2.31'), ] # avoid using hardcoded path to Python binary in build step diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.31-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.31-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..d634979d1e --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.31-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.31' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' + +description = "Set of Linux utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d5950e4b2839d00aa3781f439bfada8091bc6ed8180d8262c53b4e4304e2d299'] + +# disable account related utilities (they need OS dependent pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From 17922ae78fb1300cfeedb5a0e69b134a4f505f7d Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Tue, 7 Nov 2017 13:24:52 +0100 Subject: [PATCH 827/845] easyconfigs for anaconda 5.0.1 --- .../a/Anaconda2/Anaconda2-5.0.1.eb | 21 +++++++++++++++++++ .../a/Anaconda3/Anaconda3-5.0.1.eb | 20 ++++++++++++++++++ 2 files changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb create mode 100644 easybuild/easyconfigs/a/Anaconda3/Anaconda3-5.0.1.eb diff --git a/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb new file mode 100644 index 0000000000..7ce3151e5a --- /dev/null +++ b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb @@ -0,0 +1,21 @@ +# author: Jillian Rowe +# config upgrade to v5.0.1 by Joachim Hein +easyblock = 'EB_Anaconda' + +name = 'Anaconda2' +version = '5.0.1' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/archive/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] +checksums = ['23c676510bc87c95184ecaeb327c0b2c88007278e0d698622e2dd8fb14d9faa4'] + +moduleclass = 'lang' + diff --git a/easybuild/easyconfigs/a/Anaconda3/Anaconda3-5.0.1.eb b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-5.0.1.eb new file mode 100644 index 0000000000..8e17076703 --- /dev/null +++ b/easybuild/easyconfigs/a/Anaconda3/Anaconda3-5.0.1.eb @@ -0,0 +1,20 @@ +# author: Jillian Rowe +# config upgrade to v5.0.1 by Joachim Hein +easyblock = 'EB_Anaconda' + +name = 'Anaconda3' +version = '5.0.1' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/archive/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] +checksums = ['55e4db1919f49c92d5abbf27a4be5986ae157f074bf9f8238963cd4582a4068a'] + +moduleclass = 'lang' -- GitLab From 60f208698f1121fb8b9b1fc9950e35e36e863e02 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Tue, 7 Nov 2017 13:41:53 +0100 Subject: [PATCH 828/845] blank line removed in end of file --- easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb index 7ce3151e5a..b911e87119 100644 --- a/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb +++ b/easybuild/easyconfigs/a/Anaconda2/Anaconda2-5.0.1.eb @@ -18,4 +18,3 @@ sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] checksums = ['23c676510bc87c95184ecaeb327c0b2c88007278e0d698622e2dd8fb14d9faa4'] moduleclass = 'lang' - -- GitLab From 03f75cc91d6d73f706fbe3a14fa68a35772cf968 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 14:48:36 +0100 Subject: [PATCH 829/845] adding easyconfigs: Bazel-0.7.0-GCCcore-6.4.0.eb --- .../b/Bazel/Bazel-0.7.0-GCCcore-6.4.0.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bazel/Bazel-0.7.0-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/b/Bazel/Bazel-0.7.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Bazel/Bazel-0.7.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..386939c618 --- /dev/null +++ b/easybuild/easyconfigs/b/Bazel/Bazel-0.7.0-GCCcore-6.4.0.eb @@ -0,0 +1,17 @@ +name = 'Bazel' +version = '0.7.0' + +homepage = 'http://bazel.io/' +description = """Bazel is a build tool that builds code quickly and reliably. +It is used to build the majority of Google's software.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] +sources = ['%(namelower)s-%(version)s-dist.zip'] +checksums = ['a084a9c5d843e2343bf3f319154a48abe3d35d52feb0ad45dec427a1c4ffc416'] + +builddependencies = [('binutils', '2.28')] +dependencies = [('Java', '1.8.0_152', '', True)] + +moduleclass = 'devel' -- GitLab From e9bcec820a3092648bbdb5228b8cedb256c61c56 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 15:06:35 +0100 Subject: [PATCH 830/845] {tools}[intel/2017b] wheel v0.30.0 w/ Python 2.7.14& Python 3.6.3 --- .../wheel-0.30.0-intel-2017b-Python-2.7.14.eb | 23 +++++++++++++++++++ .../wheel-0.30.0-intel-2017b-Python-3.6.3.eb | 23 +++++++++++++++++++ 2 files changed, 46 insertions(+) create mode 100644 easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..a1d870aaab --- /dev/null +++ b/easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'wheel' +version = '0.30.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/wheel' +description = """A built-package format for Python.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['9515fe0a94e823fd90b08d22de45d7bde57c90edce705b22f5e1ecf7e1b653c8'] + +dependencies = [('Python', '2.7.14')] + +sanity_check_paths = { + 'files': ['bin/wheel'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..4b74873102 --- /dev/null +++ b/easybuild/easyconfigs/w/wheel/wheel-0.30.0-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'wheel' +version = '0.30.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/wheel' +description = """A built-package format for Python.""" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['9515fe0a94e823fd90b08d22de45d7bde57c90edce705b22f5e1ecf7e1b653c8'] + +dependencies = [('Python', '3.6.3')] + +sanity_check_paths = { + 'files': ['bin/wheel'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' -- GitLab From d513f07ada2209060c835c0e09806bf9c1f9efa2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Nov 2017 15:21:59 +0100 Subject: [PATCH 831/845] {devel}[intel/2017b] SWIG v3.0.12 w/ Python 2.7.14 & 3.6.3 --- .../SWIG-3.0.12-intel-2017b-Python-2.7.14.eb | 21 +++++++++++++++++++ .../SWIG-3.0.12-intel-2017b-Python-3.6.3.eb | 21 +++++++++++++++++++ 2 files changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-2.7.14.eb create mode 100644 easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-3.6.3.eb diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-2.7.14.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-2.7.14.eb new file mode 100644 index 0000000000..b61ada17a4 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-2.7.14.eb @@ -0,0 +1,21 @@ +name = 'SWIG' +version = '3.0.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['7cf9f447ae7ed1c51722efc45e7f14418d15d7a1e143ac9f09a668999f4fc94d'] + +dependencies = [ + ('Python', '2.7.14'), + ('PCRE', '8.41'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-3.6.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-3.6.3.eb new file mode 100644 index 0000000000..17db778b3f --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017b-Python-3.6.3.eb @@ -0,0 +1,21 @@ +name = 'SWIG' +version = '3.0.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['7cf9f447ae7ed1c51722efc45e7f14418d15d7a1e143ac9f09a668999f4fc94d'] + +dependencies = [ + ('Python', '3.6.3'), + ('PCRE', '8.41'), +] + +moduleclass = 'devel' -- GitLab From 4b7544f974949e19cda14239acfc9b651a53ec97 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 8 Nov 2017 18:43:44 +0000 Subject: [PATCH 832/845] adding easyconfigs: BWA-0.7.17-foss-2017b.eb --- .../b/BWA/BWA-0.7.17-foss-2017b.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100755 easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb new file mode 100755 index 0000000000..b45bb99bc2 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.17' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'foss', 'version': '2017b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/lh3/bwa/releases/download/v%version)s/'] +sources = ['%(namelower)s-%(version)s.tar.bz2'] +checksums = ['de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd'] + +moduleclass = 'bio' -- GitLab From efa580bf435e9508a953a667a734b48dc4a62e36 Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 8 Nov 2017 18:47:50 +0000 Subject: [PATCH 833/845] Update author affiliation --- easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb index b45bb99bc2..0ac7298efb 100755 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb @@ -11,7 +11,7 @@ # # Version >= 0.7.15 # Author: Adam Huffman -# The Francis Crick Institute +# Big Data Institute, University of Oxford # # Note that upstream development is mainly at: https://github.com/lh3/bwa ## -- GitLab From 05bf91bc4b5a49b75f061c3819c500debe5e14aa Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 8 Nov 2017 19:00:05 +0000 Subject: [PATCH 834/845] Fix download URL typo --- easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb index 0ac7298efb..ab86f8b0f1 100755 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.17-foss-2017b.eb @@ -26,7 +26,7 @@ description = """Burrows-Wheeler Aligner (BWA) is an efficient program that alig toolchain = {'name': 'foss', 'version': '2017b'} toolchainopts = {'pic': True} -source_urls = ['https://github.com/lh3/bwa/releases/download/v%version)s/'] +source_urls = ['https://github.com/lh3/bwa/releases/download/v%(version)s/'] sources = ['%(namelower)s-%(version)s.tar.bz2'] checksums = ['de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd'] -- GitLab From 844f024501695b6d641ac5e55af52725ecfa0649 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Nov 2017 10:05:50 +0100 Subject: [PATCH 835/845] adding easyconfigs: piSvM-JSC-1.2-20150622-intel-2017b.eb --- .../piSvM-JSC-1.2-20150622-intel-2017b.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/p/piSvM-JSC/piSvM-JSC-1.2-20150622-intel-2017b.eb diff --git a/easybuild/easyconfigs/p/piSvM-JSC/piSvM-JSC-1.2-20150622-intel-2017b.eb b/easybuild/easyconfigs/p/piSvM-JSC/piSvM-JSC-1.2-20150622-intel-2017b.eb new file mode 100644 index 0000000000..ccbb2c375b --- /dev/null +++ b/easybuild/easyconfigs/p/piSvM-JSC/piSvM-JSC-1.2-20150622-intel-2017b.eb @@ -0,0 +1,27 @@ +easyblock = 'MakeCp' + +name = 'piSvM-JSC' +version = '1.2-20150622' + +homepage = 'https://github.com/mricherzhagen/pisvm' +description = """piSvM is a parallel implementation of the Support Vector Machine (SVM) algorithm that allows + efficient training and testing on a multiprocessor system. +This version is a fork of the original PiSvM to increase scalability.""" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/mricherzhagen/pisvm/archive/'] +sources = [{'download_filename': 'b471fcd.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}] +checksums = ['1ef265888bcf1a64b52c09ead023fd6ed9f01cab32d31ebc84e39b622b15e498'] + +buildopts = 'CC="$CC" CXXC="$CXX" CFLAGS="$CFLAGS"' + +files_to_copy = [(['pisvm-predict', 'pisvm-train'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/pisvm-predict', 'bin/pisvm-train'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 382a685052a7cf3a5aa4503daa517bb55967c4c2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Nov 2017 15:30:59 +0100 Subject: [PATCH 836/845] adding easyconfigs: CMake-3.9.5-GCCcore-6.4.0.eb, mkl-dnn-0.11-intel-2017b.eb --- .../c/CMake/CMake-3.9.5-GCCcore-6.4.0.eb | 41 +++++++++++++++++++ .../m/mkl-dnn/mkl-dnn-0.11-intel-2017b.eb | 26 ++++++++++++ 2 files changed, 67 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.9.5-GCCcore-6.4.0.eb create mode 100644 easybuild/easyconfigs/m/mkl-dnn/mkl-dnn-0.11-intel-2017b.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..424c924ba9 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.5-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.5' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['6220c1683b4e6bb8f38688fa3ffb17a7cf39f36317c2ddfdc3f12f09d086c166'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0g'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/mkl-dnn/mkl-dnn-0.11-intel-2017b.eb b/easybuild/easyconfigs/m/mkl-dnn/mkl-dnn-0.11-intel-2017b.eb new file mode 100644 index 0000000000..b0c4085837 --- /dev/null +++ b/easybuild/easyconfigs/m/mkl-dnn/mkl-dnn-0.11-intel-2017b.eb @@ -0,0 +1,26 @@ +easyblock = 'CMakeMake' + +name = 'mkl-dnn' +version = '0.11' + +homepage = 'https://01.org/mkl-dnn' +description = "Intel(R) Math Kernel Library for Deep Neural Networks (Intel(R) MKL-DNN)" + +toolchain = {'name': 'intel', 'version': '2017b'} + +source_urls = ['https://github.com/01org/mkl-dnn/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['4cb4a85b05fe42aa527fd70a048caddcba9361f6d3d7bea9f33d74524e206d7d'] + +builddependencies = [('CMake', '3.9.5')] + +separate_build_dir = True + +configopts = "-DFAIL_WITHOUT_MKL=1" + +sanity_check_paths = { + 'files': ['include/mkldnn.h', 'include/mkldnn.hpp', 'include/mkldnn_types.h', 'lib/libmkldnn.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From ad90efa485da5c6cd35147081d52536b7f84729a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Nov 2017 22:11:15 +0100 Subject: [PATCH 837/845] adding easyconfigs: Valgrind-3.13.0-intel-2017b.eb --- .../v/Valgrind/Valgrind-3.13.0-intel-2017b.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017b.eb diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017b.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017b.eb new file mode 100644 index 0000000000..1a72df4981 --- /dev/null +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.13.0-intel-2017b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'Valgrind' +version = '3.13.0' + +homepage = 'http://valgrind.org' +description = "Valgrind: Debugging and profiling tools" + +toolchain = {'name': 'intel', 'version': '2017b'} +toolchainopts = {'optarch': False} + +source_urls = [ + 'ftp://sourceware.org/pub/valgrind/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/valgrind/', +] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['d76680ef03f00cd5e970bbdcd4e57fb1f6df7d2e2c071635ef2be74790190c3b'] + +configopts = ' --with-mpicc="$MPICC"' + +binaries = [ + 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', + 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'debugger' -- GitLab From 9753bde46fc62f83783517592c43ccc3cb4c4d5a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 10 Nov 2017 16:42:00 +0100 Subject: [PATCH 838/845] avoid hardcoding extension versions in worker easyconfig, include 'perl' as OS dep --- .../w/worker/worker-1.6.7-intel-2016b.eb | 42 +++++++------------ 1 file changed, 15 insertions(+), 27 deletions(-) diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb index c2b7efd3e7..4f9c50259f 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb @@ -14,6 +14,8 @@ source_urls = ['https://github.com/gjbex/worker/archive/'] sources = ['%(version)s.tar.gz'] checksums = ['350ffa36c792c5733ae202e76cc266648fca1311a835e9d73c98ed4f13a6835f'] +osdependencies = ['perl'] + tcname = 'intel' tcver = '2016b' builddependencies = [(tcname, tcver)] @@ -23,53 +25,39 @@ exts_defaultclass = 'PerlModule' exts_list = [ ('Config::General', '2.61', { - 'source_tmpl': 'Config-General-2.61.tar.gz', + 'source_tmpl': 'Config-General-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], - 'checksums': [ - '379a160ddac33c02045d2b7e20b37ca9b155722ce20374f9f245e519f7d7a6ca', # Config-General-2.61.tar.gz - ], + 'checksums': ['379a160ddac33c02045d2b7e20b37ca9b155722ce20374f9f245e519f7d7a6ca'], }), ('IO::Stringy', '2.111', { - 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], - 'checksums': [ - '8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d', # IO-stringy-2.111.tar.gz - ], + 'checksums': ['8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d'], }), ('Text::CSV', '1.33', { - 'source_tmpl': 'Text-CSV-1.33.tar.gz', + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], - 'checksums': [ - '9c5b8fb9baffd58f02ed2b3f0b6d9a6454198f18a80e7f3a049680ddbdb24115', # Text-CSV-1.33.tar.gz - ], + 'checksums': ['9c5b8fb9baffd58f02ed2b3f0b6d9a6454198f18a80e7f3a049680ddbdb24115'], }), ('DBI', '1.636', { - 'source_tmpl': 'DBI-1.636.tar.gz', + 'source_tmpl': 'DBI-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], - 'checksums': [ - '8f7ddce97c04b4b7a000e65e5d05f679c964d62c8b02c94c1a7d815bb2dd676c', # DBI-1.636.tar.gz - ], + 'checksums': ['8f7ddce97c04b4b7a000e65e5d05f679c964d62c8b02c94c1a7d815bb2dd676c'], }), ('DBD::SQLite', '1.50', { - 'source_tmpl': 'DBD-SQLite-1.50.tar.gz', + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], - 'checksums': [ - '3ac513ab73944fd7d4b672e1fe885dc522b6369d38f46a68e67e0045bf159ce1', # DBD-SQLite-1.50.tar.gz - ], + 'checksums': ['3ac513ab73944fd7d4b672e1fe885dc522b6369d38f46a68e67e0045bf159ce1'], }), ('Date::Language', '2.30', { - 'source_tmpl': 'TimeDate-2.30.tar.gz', + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], - 'checksums': [ - '75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86', # TimeDate-2.30.tar.gz - ], + 'checksums': ['75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86'], }), ('Template', '2.27', { 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], - 'checksums': [ - '1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc', # Template-Toolkit-2.27.tar.gz - ], + 'checksums': ['1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc'], }), ] -- GitLab From 426bbbe01979d9eab7cc5380d9f3de908130f2d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 10 Nov 2017 16:43:05 +0100 Subject: [PATCH 839/845] adding easyconfigs: worker-1.6.7-intel-2017a.eb, worker-1.6.7-intel-2017b.eb --- .../w/worker/worker-1.6.7-intel-2017a.eb | 98 +++++++++++++++++++ .../w/worker/worker-1.6.7-intel-2017b.eb | 98 +++++++++++++++++++ 2 files changed, 196 insertions(+) create mode 100644 easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb create mode 100644 easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb new file mode 100644 index 0000000000..03d305482f --- /dev/null +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb @@ -0,0 +1,98 @@ +easyblock = 'ConfigureMake' + +name = 'worker' +version = '1.6.7' + +homepage = 'https://github.com/gjbex/worker' +description = """The Worker framework has been developed to help deal with parameter exploration experiments + that would otherwise result in many jobs, forcing the user resort to scripting to retain her sanity; + see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/gjbex/worker/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['350ffa36c792c5733ae202e76cc266648fca1311a835e9d73c98ed4f13a6835f'] + +osdependencies = ['perl'] + +tcname = 'intel' +tcver = '2017a' +builddependencies = [(tcname, tcver)] +versionsuffix = '-%s-%s' % (tcname, tcver) + +exts_defaultclass = 'PerlModule' + +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': ['8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d'], + }), + ('Text::CSV', '1.95', { + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['7e0a11d9c1129a55b68a26aa4b37c894279df255aa63ec8341d514ab848dbf61'], + }), + ('DBI', '1.637', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': ['2557712593e80142c3b50877e00369b6ce78fa26d44edc42156d81a5cdd26bc6'], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': ['75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86'], + }), + ('Template', '2.27', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc'], + }), +] + +modextrapaths = { + 'PERL5LIB': ['share/perl5', 'lib64/perl5'], +} + +# adjust worker configuration file +# note: tweak this to your local setup +postinstallcmds = [ + 'sed -i "s/ cores_per_node = .*/ cores_per_node = 16/g" %(installdir)s/conf/worker.conf', + 'sed -i "s@ qsub = .*@ qsub = `which qsub`@g" %(installdir)s/conf/worker.conf', + 'sed -i "s/ email = .*/ email = hpc-support@example.com/g" %(installdir)s/conf/worker.conf', + 'sed -i "s/ unload_modules = .*/ unload_modules = intel/g" %(installdir)s/conf/worker.conf', + 'sed -i "s@ mpi_module = .*@ mpi_module = %s/%s@g" %%(installdir)s/conf/worker.conf' % (tcname, tcver), + 'sed -i "s@ module_path = .*@ module_path = %(installdir)s/../../../modules/all@g" %(installdir)s/conf/worker.conf', +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in [ + 'dbilogstrip', + 'dbiprof', + 'dbiproxy', + 'tpage', + 'ttree', + 'wcat', + 'wconvert', + 'wload', + 'worker', + 'wreduce', + 'wresume', + 'wsub', + 'wsummarize', + ]], + 'dirs': ['lib/perl', 'lib/tt', 'lib64/perl5'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb new file mode 100644 index 0000000000..0a00ed3045 --- /dev/null +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb @@ -0,0 +1,98 @@ +easyblock = 'ConfigureMake' + +name = 'worker' +version = '1.6.7' + +homepage = 'https://github.com/gjbex/worker' +description = """The Worker framework has been developed to help deal with parameter exploration experiments + that would otherwise result in many jobs, forcing the user resort to scripting to retain her sanity; + see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/gjbex/worker/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['350ffa36c792c5733ae202e76cc266648fca1311a835e9d73c98ed4f13a6835f'] + +osdependencies = ['perl'] + +tcname = 'intel' +tcver = '2017b' +builddependencies = [(tcname, tcver)] +versionsuffix = '-%s-%s' % (tcname, tcver) + +exts_defaultclass = 'PerlModule' + +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': ['8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d'], + }), + ('Text::CSV', '1.95', { + 'source_tmpl': 'Text-CSV-%(version)s.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['7e0a11d9c1129a55b68a26aa4b37c894279df255aa63ec8341d514ab848dbf61'], + }), + ('DBI', '1.637', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': ['2557712593e80142c3b50877e00369b6ce78fa26d44edc42156d81a5cdd26bc6'], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': ['75bd254871cb5853a6aa0403ac0be270cdd75c9d1b6639f18ecba63c15298e86'], + }), + ('Template', '2.27', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['1311a403264d0134c585af0309ff2a9d5074b8ece23ece5660d31ec96bf2c6dc'], + }), +] + +modextrapaths = { + 'PERL5LIB': ['share/perl5', 'lib64/perl5'], +} + +# adjust worker configuration file +# note: tweak this to your local setup +postinstallcmds = [ + 'sed -i "s/ cores_per_node = .*/ cores_per_node = 16/g" %(installdir)s/conf/worker.conf', + 'sed -i "s@ qsub = .*@ qsub = `which qsub`@g" %(installdir)s/conf/worker.conf', + 'sed -i "s/ email = .*/ email = hpc-support@example.com/g" %(installdir)s/conf/worker.conf', + 'sed -i "s/ unload_modules = .*/ unload_modules = intel/g" %(installdir)s/conf/worker.conf', + 'sed -i "s@ mpi_module = .*@ mpi_module = %s/%s@g" %%(installdir)s/conf/worker.conf' % (tcname, tcver), + 'sed -i "s@ module_path = .*@ module_path = %(installdir)s/../../../modules/all@g" %(installdir)s/conf/worker.conf', +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in [ + 'dbilogstrip', + 'dbiprof', + 'dbiproxy', + 'tpage', + 'ttree', + 'wcat', + 'wconvert', + 'wload', + 'worker', + 'wreduce', + 'wresume', + 'wsub', + 'wsummarize', + ]], + 'dirs': ['lib/perl', 'lib/tt', 'lib64/perl5'], +} + +moduleclass = 'tools' -- GitLab From 8893205133abb26416b9f3e3f8f370bcf9b7bb93 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 10 Nov 2017 16:59:23 +0100 Subject: [PATCH 840/845] clean up sanity check in worker easyconfig --- .../w/worker/worker-1.6.7-intel-2016b.eb | 17 ++--------------- 1 file changed, 2 insertions(+), 15 deletions(-) diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb index 4f9c50259f..043cc16faa 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2016b.eb @@ -77,21 +77,8 @@ postinstallcmds = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in [ - 'dbilogstrip', - 'dbiprof', - 'dbiproxy', - 'tpage', - 'ttree', - 'wcat', - 'wconvert', - 'wload', - 'worker', - 'wreduce', - 'wresume', - 'wsub', - 'wsummarize', - ]], + 'files': ['bin/%s' % x for x in ['dbilogstrip', 'dbiprof', 'dbiproxy', 'tpage', 'ttree', 'wcat', 'wconvert', + 'wload', 'worker', 'wreduce', 'wresume', 'wsub', 'wsummarize']], 'dirs': ['lib/perl', 'lib/tt', 'lib64/perl5'], } -- GitLab From a96fbc6f63aff2ebad4468a07f76e7f071363708 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 10 Nov 2017 17:02:28 +0100 Subject: [PATCH 841/845] clean up sanity check in worker easyconfigs --- .../w/worker/worker-1.6.7-intel-2017a.eb | 17 ++--------------- .../w/worker/worker-1.6.7-intel-2017b.eb | 17 ++--------------- 2 files changed, 4 insertions(+), 30 deletions(-) diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb index 03d305482f..0d86380895 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017a.eb @@ -77,21 +77,8 @@ postinstallcmds = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in [ - 'dbilogstrip', - 'dbiprof', - 'dbiproxy', - 'tpage', - 'ttree', - 'wcat', - 'wconvert', - 'wload', - 'worker', - 'wreduce', - 'wresume', - 'wsub', - 'wsummarize', - ]], + 'files': ['bin/%s' % x for x in ['dbilogstrip', 'dbiprof', 'dbiproxy', 'tpage', 'ttree', 'wcat', 'wconvert', + 'wload', 'worker', 'wreduce', 'wresume', 'wsub', 'wsummarize']], 'dirs': ['lib/perl', 'lib/tt', 'lib64/perl5'], } diff --git a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb index 0a00ed3045..59a378bf10 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.6.7-intel-2017b.eb @@ -77,21 +77,8 @@ postinstallcmds = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in [ - 'dbilogstrip', - 'dbiprof', - 'dbiproxy', - 'tpage', - 'ttree', - 'wcat', - 'wconvert', - 'wload', - 'worker', - 'wreduce', - 'wresume', - 'wsub', - 'wsummarize', - ]], + 'files': ['bin/%s' % x for x in ['dbilogstrip', 'dbiprof', 'dbiproxy', 'tpage', 'ttree', 'wcat', 'wconvert', + 'wload', 'worker', 'wreduce', 'wresume', 'wsub', 'wsummarize']], 'dirs': ['lib/perl', 'lib/tt', 'lib64/perl5'], } -- GitLab From 58057bd0db3db80e8056fb6a5e66a9decfbde321 Mon Sep 17 00:00:00 2001 From: Joachim Hein Date: Fri, 10 Nov 2017 17:45:13 +0100 Subject: [PATCH 842/845] easy-config to build mkl in gompi 2017b --- .../i/imkl/imkl-2017.3.196-gompi-2017b.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/i/imkl/imkl-2017.3.196-gompi-2017b.eb diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-gompi-2017b.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-gompi-2017b.eb new file mode 100644 index 0000000000..2591539c25 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.3.196-gompi-2017b.eb @@ -0,0 +1,38 @@ +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ + +name = 'imkl' +version = '2017.3.196' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'gompi', 'version': '2017b'} + +sources = ['l_mkl_%(version)s.tgz'] +checksums = ['fd7295870fa164d6138c9818304f25f2bb263c814a6c6539c9fe4e104055f1ca'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +interfaces = True + +postinstallcmds = [ + # extract the examples + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/' +] + +modextravars = { + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', +} + +moduleclass = 'numlib' -- GitLab From fad55f7d8b3ca48d888f0eb3751cbdb0d361d787 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 11 Nov 2017 14:08:05 +0100 Subject: [PATCH 843/845] adding easyconfigs: Ruby-2.4.2-foss-2017b.eb --- .../r/Ruby/Ruby-2.4.2-foss-2017b.eb | 67 +++++++++++++++++++ 1 file changed, 67 insertions(+) create mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb new file mode 100644 index 0000000000..7af1eaecd7 --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb @@ -0,0 +1,67 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- + +name = 'Ruby' +version = '2.4.2' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'foss', 'version': '2017b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +ext_options = { + 'source_urls': ['http://rubygems.org/downloads/'], + 'source_tmpl': '%(name)s-%(version)s.gem', +} + +exts_list = [ + ('ffi', '1.9.18', ext_options), + ('childprocess', '0.8.0', ext_options), + ('json', '2.1.0', ext_options), + ('cabin', '0.9.0', ext_options), + ('backports', '3.10.3', ext_options), + ('arr-pm', '0.0.10', ext_options), + ('clamp', '1.1.2', ext_options), + ('multipart-post', '2.0.0', ext_options), + ('faraday', '0.13.1', ext_options), + ('faraday_middleware', '0.12.2', ext_options), + ('highline', '1.7.8', ext_options), + ('net-http-pipeline', '1.0.1', ext_options), + ('connection_pool', '2.2.1', ext_options), + ('net-http-persistent', '2.9.4', ext_options), + ('multi_json', '1.12.2', ext_options), + ('public_suffix', '3.0.1', ext_options), + ('addressable', '2.4.0', ext_options), + ('gh', '0.15.1', ext_options), + ('launchy', '2.4.3', ext_options), + ('ethon', '0.11.0', ext_options), + ('typhoeus', '1.3.0', ext_options), + ('websocket', '1.2.4', ext_options), + ('pusher-client', '0.6.2', ext_options), + ('diff-lcs', '1.3', ext_options), + ('rspec-support', '3.7.0', ext_options), + ('rspec-mocks', '3.7.0', ext_options), + ('rspec-expectations', '3.7.0', ext_options), + ('rspec-core', '3.7.0', ext_options), + ('rspec', '3.7.0', ext_options), + ('rack', '2.0.3', ext_options), + ('rack-protection', '2.0.0', ext_options), + ('tilt', '2.0.8', ext_options), + ('mustermann', '1.0.1', ext_options), + ('sinatra', '2.0.0', ext_options), + ('rack-test', '0.7.0', ext_options), + ('bundler', '1.16.0', ext_options), +] + +moduleclass = 'lang' -- GitLab From f60a569444e489c186317e25dd7835e3c9d6cccb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 11 Nov 2017 15:04:07 +0100 Subject: [PATCH 844/845] {vis}[GCCcore/6.4.0] X11 v20171023 --- ...tltool-0.51.0-GCCcore-6.4.0-Perl-5.26.0.eb | 34 +++++ .../intltool-0.51.0_fix-Perl-compat.patch | 45 ++++++ .../x/X11/X11-20171023-GCCcore-6.4.0.eb | 136 ++++++++++++++++++ 3 files changed, 215 insertions(+) create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.4.0-Perl-5.26.0.eb create mode 100644 easybuild/easyconfigs/i/intltool/intltool-0.51.0_fix-Perl-compat.patch create mode 100644 easybuild/easyconfigs/x/X11/X11-20171023-GCCcore-6.4.0.eb diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.4.0-Perl-5.26.0.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.4.0-Perl-5.26.0.eb new file mode 100644 index 0000000000..33a09c3787 --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-GCCcore-6.4.0-Perl-5.26.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'intltool' +version = '0.51.0' +versionsuffix = '-Perl-5.26.0' + +homepage = 'http://freedesktop.org/wiki/Software/intltool/' +description = """intltool is a set of tools to centralize translation of + many different file formats using GNU gettext-compatible PO files.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +sources = [SOURCE_TAR_GZ] +patches = ['intltool-%(version)s_fix-Perl-compat.patch'] +checksums = [ + '67c74d94196b153b774ab9f89b2fa6c6ba79352407037c8c14d5aeb334e959cd', # intltool-0.51.0.tar.gz + 'e839f7228b2b92301831bca88ed0bc7bce5dbf862568f1644642988204903db6', # intltool-0.51.0_fix-Perl-compat.patch +] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('XML-Parser', '2.44_01', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/intltool%s' % x for x in ['-extract', '-merge', '-prepare', '-update', 'ize']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0_fix-Perl-compat.patch b/easybuild/easyconfigs/i/intltool/intltool-0.51.0_fix-Perl-compat.patch new file mode 100644 index 0000000000..cbb0f37a47 --- /dev/null +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0_fix-Perl-compat.patch @@ -0,0 +1,45 @@ +fix for "Unescaped left brace in regex is illegal here in regex" +see https://github.com/Alexpux/MSYS2-packages/blob/master/intltool/perl-5.22-compatibility.patch +--- intltool-0.51.0.orig/intltool-update.in 2015-03-09 02:39:54.000000000 +0100 ++++ intltool-0.51.0.orig/intltool-update.in 2015-06-19 01:52:07.171228154 +0200 +@@ -1062,7 +1062,7 @@ + } + } + +- if ($str =~ /^(.*)\${?([A-Z_]+)}?(.*)$/) ++ if ($str =~ /^(.*)\$\{?([A-Z_]+)}?(.*)$/) + { + my $rest = $3; + my $untouched = $1; +@@ -1190,10 +1190,10 @@ + $name =~ s/\(+$//g; + $version =~ s/\(+$//g; + +- $varhash{"PACKAGE_NAME"} = $name if (not $name =~ /\${?AC_PACKAGE_NAME}?/); +- $varhash{"PACKAGE"} = $name if (not $name =~ /\${?PACKAGE}?/); +- $varhash{"PACKAGE_VERSION"} = $version if (not $name =~ /\${?AC_PACKAGE_VERSION}?/); +- $varhash{"VERSION"} = $version if (not $name =~ /\${?VERSION}?/); ++ $varhash{"PACKAGE_NAME"} = $name if (not $name =~ /\$\{?AC_PACKAGE_NAME}?/); ++ $varhash{"PACKAGE"} = $name if (not $name =~ /\$\{?PACKAGE}?/); ++ $varhash{"PACKAGE_VERSION"} = $version if (not $name =~ /\$\{?AC_PACKAGE_VERSION}?/); ++ $varhash{"VERSION"} = $version if (not $name =~ /\$\{?VERSION}?/); + } + + if ($conf_source =~ /^AC_INIT\(([^,\)]+),([^,\)]+)[,]?([^,\)]+)?/m) +@@ -1219,11 +1219,11 @@ + $version =~ s/\(+$//g; + $bugurl =~ s/\(+$//g if (defined $bugurl); + +- $varhash{"PACKAGE_NAME"} = $name if (not $name =~ /\${?AC_PACKAGE_NAME}?/); +- $varhash{"PACKAGE"} = $name if (not $name =~ /\${?PACKAGE}?/); +- $varhash{"PACKAGE_VERSION"} = $version if (not $name =~ /\${?AC_PACKAGE_VERSION}?/); +- $varhash{"VERSION"} = $version if (not $name =~ /\${?VERSION}?/); +- $varhash{"PACKAGE_BUGREPORT"} = $bugurl if (defined $bugurl and not $bugurl =~ /\${?\w+}?/); ++ $varhash{"PACKAGE_NAME"} = $name if (not $name =~ /\$\{?AC_PACKAGE_NAME}?/); ++ $varhash{"PACKAGE"} = $name if (not $name =~ /\$\{?PACKAGE}?/); ++ $varhash{"PACKAGE_VERSION"} = $version if (not $name =~ /\$\{?AC_PACKAGE_VERSION}?/); ++ $varhash{"VERSION"} = $version if (not $name =~ /\$\{?VERSION}?/); ++ $varhash{"PACKAGE_BUGREPORT"} = $bugurl if (defined $bugurl and not $bugurl =~ /\$\{?\w+}?/); + } + + # \s makes this not work, why? diff --git a/easybuild/easyconfigs/x/X11/X11-20171023-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/X11/X11-20171023-GCCcore-6.4.0.eb new file mode 100644 index 0000000000..71b76bbf6a --- /dev/null +++ b/easybuild/easyconfigs/x/X11/X11-20171023-GCCcore-6.4.0.eb @@ -0,0 +1,136 @@ +easyblock = 'Bundle' + +name = 'X11' +version = '20171023' + +homepage = 'https://www.x.org' +description = "The X Window System (X11) is a windowing system for bitmap displays" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [ + XORG_LIB_SOURCE, + XORG_PROTO_SOURCE, + 'http://xcb.freedesktop.org/dist/', + 'http://xkbcommon.org/download/', + 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', + XORG_DATA_SOURCE + '/xkeyboard-config', +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('fontconfig', '2.12.4'), + ('freetype', '2.8'), + ('zlib', '1.2.11'), +] +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.28'), + ('Autotools', '20170619'), + ('Bison', '3.0.4'), + ('gettext', '0.19.8.1'), + ('pkg-config', '0.29.2'), + ('intltool', '0.51.0', '-Perl-5.26.0') +] + +default_easyblock = 'ConfigureMake' + +common_specs = { + 'sources': [SOURCE_TAR_GZ], + 'start_dir': '%(name)s-%(version)s', +} +components = [ + ('xorg-macros', '1.19.1', { # 2017-01-29 + 'sources': ['util-macros-%(version)s.tar.gz'], + 'start_dir': 'util-macros-%(version)s', + }), + ('libpthread-stubs', '0.4', common_specs), # 2017-03-14 + ('bigreqsproto', '1.1.2', common_specs), # 2012-03-23 + ('compositeproto', '0.4.2', common_specs), # 2010-10-30 + ('damageproto', '1.2.1', common_specs), # 2010-10-30 + ('dmxproto', '2.3.1', common_specs), # 2011-01-06 + ('dri2proto', '2.8', common_specs), # 2012-07-11 + ('dri3proto', '1.0', common_specs), # 2013-11-01 + ('fixesproto', '5.0', common_specs), # 2011-03-08 + ('fontsproto', '2.1.3', common_specs), # 2014-04-14 + ('glproto', '1.4.17', common_specs), # 2013-12-10 + ('inputproto', '2.3.2', common_specs), # 2016-04-04 + ('kbproto', '1.0.7', common_specs), # 2015-05-01 + ('presentproto', '1.1', common_specs), # 2017-01-26 + ('randrproto', '1.5.0', common_specs), # 2015-05-17 + ('recordproto', '1.14.2', common_specs), # 2012-03-23 + ('renderproto', '0.11.1', common_specs), # 2010-08-10 + ('resourceproto', '1.2.0', common_specs), # 2011-05-28 + ('scrnsaverproto', '1.2.2', common_specs), # 2012-03-23 + ('videoproto', '2.3.3', common_specs), # 2016-03-11 + ('xcmiscproto', '1.2.2', common_specs), # 2012-03-23 + ('xextproto', '7.3.0', common_specs), # 2013-12-27 + ('xf86bigfontproto', '1.2.0', common_specs), # 2009-08-27 + ('xf86dgaproto', '2.1', common_specs), # 2009-10-01 + ('xf86driproto', '2.1.1', common_specs), # 2011-01-06 + ('xf86vidmodeproto', '2.3.1', common_specs), # 2011-01-06 + ('xineramaproto', '1.2.1', common_specs), # 2011-01-06 + + ('xproto', '7.0.31', common_specs), # 2016-09-23 + ('libXau', '1.0.8', common_specs), # 2013-05-24 + ('libXdmcp', '1.1.2', common_specs), # 2015-03-21 + ('xcb-proto', '1.12', common_specs), # 2016-05-18 + ('libxcb', '1.12', common_specs), # 2016-05-18 + ('xtrans', '1.3.5', common_specs), # 2014-09-22 + ('libxkbcommon', '0.7.2', { # 2017-08-04 + 'sources': ['libxkbcommon-%(version)s.tar.xz'], + 'start_dir': 'libxkbcommon-%(version)s', + }), + ('libX11', '1.6.5', common_specs), # 2017-02-26 + ('libXext', '1.3.3', common_specs), # 2014-07-24 + ('libFS', '1.0.7', common_specs), # 2015-05-01 + ('libICE', '1.0.9', common_specs), # 2014-06-07 + ('libSM', '1.2.2', common_specs), # 2013-09-08 + ('libXScrnSaver', '1.2.2', common_specs), # 2012-03-08 + ('libXt', '1.1.5', common_specs), # 2015-05-01 + ('libXmu', '1.1.2', common_specs), # 2013-09-08 + ('libXpm', '3.5.12', common_specs), # 2016-12-15 + ('libXaw', '1.0.13', common_specs), # 2015-05-01 + ('libXfixes', '5.0.3', common_specs), # 2016-10-04 + ('libXcomposite', '0.4.4', common_specs), # 2013-01-03 + ('libXrender', '0.9.10', common_specs), # 2016-10-04 + ('libXcursor', '1.1.14', common_specs), # 2013-05-30 + ('libXdamage', '1.1.4', common_specs), # 2013-01-03 + ('libfontenc', '1.1.3', common_specs), # 2015-05-01 + ('libXfont', '1.5.3', common_specs), # 2017-10-19 + ('libXfont2', '2.0.2', common_specs), # 2017-10-11 + ('libXft', '2.3.2', common_specs), # 2014-06-06 + ('libXi', '1.7.9', common_specs), # 2017-01-23 + ('libXinerama', '1.1.3', common_specs), # 2013-05-31 + ('libXrandr', '1.5.1', common_specs), # 2016-10-04 + ('libXres', '1.2.0', common_specs), # 2017-10-11 + ('libXtst', '1.2.3', common_specs), # 2016-10-04 + ('libXv', '1.0.11', common_specs), # 2016-10-04 + ('libXvMC', '1.0.10', common_specs), # 2016-10-04 + ('libXxf86dga', '1.1.4', common_specs), # 2013-05-31 + ('libXxf86vm', '1.1.4', common_specs), # 2015-02-24 + ('libdmx', '1.1.3', common_specs), # 2013-05-28 + ('libpciaccess', '0.14', common_specs), # 2017-10-23 + ('libxkbfile', '1.0.9', common_specs), # 2015-05-01 + ('libxshmfence', '1.2', common_specs), # 2015-01-02 + ('xcb-util', '0.4.0', common_specs), # 2014-10-15 + ('xcb-util-image', '0.4.0', common_specs), # 2014-10-15 + ('xcb-util-keysyms', '0.4.0', common_specs), # 2014-10-01 + ('xcb-util-renderutil', '0.3.9', common_specs), # 2014-06-13 + ('xcb-util-wm', '0.4.1', common_specs), # 2014-02-19 + ('xcb-util-cursor', '0.1.3', common_specs), # 2016-05-12 + ('xkeyboard-config', '2.22', common_specs), # 2017-10-04 +] + +preconfigopts = "if [ ! -f configure ]; then ./autogen.sh; fi && " + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], + 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib/pkgconfig', + 'share/pkgconfig', 'share/X11/xkb'], +} + +moduleclass = 'vis' -- GitLab From 2d7c827dabfa991cfea5771e8d2acb380a57d2a5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 12 Nov 2017 10:15:54 +0100 Subject: [PATCH 845/845] add SHA256 checksum in Ruby easyconfig --- easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb index 7af1eaecd7..893a646568 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.4.2-foss-2017b.eb @@ -19,6 +19,7 @@ toolchain = {'name': 'foss', 'version': '2017b'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] +checksums = ['93b9e75e00b262bc4def6b26b7ae8717efc252c47154abb7392e54357e6c8c9c'] ext_options = { 'source_urls': ['http://rubygems.org/downloads/'], -- GitLab