diff --git a/.travis.yml b/.travis.yml index 07cebed7383024955eb896106fc2913f24c05718..cab5b8a8be847e7ecd4d99c0f2895279bef1c305 100644 --- a/.travis.yml +++ b/.travis.yml @@ -24,7 +24,7 @@ install: # pydot (dep for python-graph-dot) 1.2.0 and more recent doesn't work with Python 2.6 - if [ "x$TRAVIS_PYTHON_VERSION" == 'x2.6' ]; then pip install pydot==1.1.0; else pip install pydot; fi # required for test_dep_graph - - pip install python-graph-core python-graph-dot + - pip install pep8 python-graph-core python-graph-dot # install easybuild-framework/easybuild-easyblocks (and dependencies) # use 'develop' branch of framework/easyblocks, except when testing 'master' - if [ "x$TRAVIS_BRANCH" = 'xmaster' ]; then BRANCH=master; else BRANCH=develop; fi @@ -39,6 +39,13 @@ install: - if [ ! -z $ENV_MOD_VERSION ]; then source $(which install_eb_dep.sh) modules-${ENV_MOD_VERSION} $HOME; fi - if [ ! -z $LMOD_VERSION ]; then source $(which install_eb_dep.sh) lua-5.1.4.8 $HOME; fi - if [ ! -z $LMOD_VERSION ]; then source $(which install_eb_dep.sh) Lmod-${LMOD_VERSION} $HOME; fi +before_script: + - cd $TRAVIS_BUILD_DIR + # pull in develop so we can diff against it + - git fetch -v origin ${TRAVIS_BRANCH}:${TRAVIS_BRANCH} + # get list of filenames for modified/added files, use '...' to compare with merge base of develop and branch + - git diff --name-only --diff-filter=AM ${TRAVIS_BRANCH}...HEAD script: + - cd $HOME - export PYTHONPATH=$TRAVIS_BUILD_DIR - python -O -m test.easyconfigs.suite diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index fe82903a6c3daf63c74d6884ecd069a4ff1b10bf..920072b756b06f1e8028c108b22011f1efab52fa 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -5,7 +5,7 @@ We'd love you to contribute back to EasyBuild, and here's how you can do it: the ### Fork easybuild-easyconfigs -First, you'll need to fork [easybuild-easyconfigs on GitHub](http://github.com/hpcugent/easybuild-easyconfigs). +First, you'll need to fork [easybuild-easyconfigs on GitHub](https://github.com/easybuilders/easybuild-easyconfigs). If you do not have a (free) GitHub account yet, you'll need to get one. @@ -25,10 +25,10 @@ Pull the _develop_ branch from the main easybuild-easyconfigs repository: ```bash cd easybuild -git remote add github_hpcugent git@github.com:hpcugent/easybuild-easyconfigs.git +git remote add github_easybuilders git@github.com:easybuilders/easybuild-easyconfigs.git git branch develop git checkout develop -git pull github_hpcugent develop +git pull github_easybuilders develop ``` ### Keep develop up-to-date @@ -39,7 +39,7 @@ Make sure you update it every time you create a feature branch (see below): ```bash git checkout develop -git pull github_hpcugent develop +git pull github_easybuilders develop ``` @@ -49,7 +49,7 @@ git pull github_hpcugent develop ### Pick a branch name Please try and follow these guidelines when picking a branch name: - * use the number of the issue as a prefix for your branch name, e.g. `86_` for issue [#86](https://github.com/hpcugent/easybuild-framework/issues/86) + * use the number of the issue as a prefix for your branch name, e.g. `86_` for issue [#86](https://github.com/easybuilders/easybuild-framework/issues/86) * append a short but descriptive branch name, in which words are joined by underscores, e.g. `86_encoding_scheme` ### Create branch @@ -113,7 +113,7 @@ If you're contributing code to an existing issue you can also convert the issue GITHUBUSER=your_username && PASSWD=your_password && BRANCH=branch_name && ISSUE=issue_number && \ curl --user "$GITHUBUSER:$PASSWD" --request POST \ --data "{\"issue\": \"$ISSUE\", \"head\": \"$GITHUBUSER:$BRANCH\", \"base\": \"develop\"}" \ -https://api.github.com/repos/hpcugent/easybuild-easyconfigs/pulls +https://api.github.com/repos/easybuilders/easybuild-easyconfigs/pulls ``` This is currently only supported by github from the command line and not via the web interface. You might also want to look into [hub](https://github.com/defunkt/hub) for more command line features. diff --git a/README.rst b/README.rst index b6fcf302e98c2dbb4b3f29e119d21cb445f7a37d..be42964380b8f67d9aad03161a9c93b3f7d2b36c 100644 --- a/README.rst +++ b/README.rst @@ -1,7 +1,7 @@ -.. image:: http://hpcugent.github.io/easybuild/images/easybuild_logo_small.png +.. image:: https://easybuilders.github.io/easybuild/images/easybuild_logo_small.png :align: center -`EasyBuild `_ is a software build +`EasyBuild `_ is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way. @@ -15,7 +15,7 @@ The EasyBuild documentation is available at http://easybuild.readthedocs.org/. The easybuild-easyconfigs package is hosted on GitHub, along with an issue tracker for bug reports and feature requests, see -http://github.com/hpcugent/easybuild-easyconfigs. +https://github.com/easybuilders/easybuild-easyconfigs. Related Python packages: @@ -23,23 +23,23 @@ Related Python packages: * the EasyBuild framework, which includes the ``easybuild.framework`` and ``easybuild.tools`` Python packages that provide general support for building and installing software - * GitHub repository: http://github.com/hpcugent/easybuild-framework + * GitHub repository: https://github.com/easybuilders/easybuild-framework * PyPi: https://pypi.python.org/pypi/easybuild-framework * **easybuild-easyblocks** * a collection of easyblocks that implement support for building and installing (groups of) software packages - * GitHub repository: http://github.com/hpcugent/easybuild-easyblocks + * GitHub repository: https://github.com/easybuilders/easybuild-easyblocks * package on PyPi: https://pypi.python.org/pypi/easybuild-easyblocks *Build status overview:* * **master** branch: - .. image:: https://travis-ci.org/hpcugent/easybuild-easyconfigs.svg?branch=master - :target: https://travis-ci.org/hpcugent/easybuild-easyconfigs/branches + .. image:: https://travis-ci.org/easybuilders/easybuild-easyconfigs.svg?branch=master + :target: https://travis-ci.org/easybuilders/easybuild-easyconfigs/branches * **develop** branch: - .. image:: https://travis-ci.org/hpcugent/easybuild-easyconfigs.svg?branch=develop - :target: https://travis-ci.org/hpcugent/easybuild-easyconfigs/branches + .. image:: https://travis-ci.org/easybuilders/easybuild-easyconfigs.svg?branch=develop + :target: https://travis-ci.org/easybuilders/easybuild-easyconfigs/branches diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 4b1afa611795ea3902af153120b822226a4b2926..e766c8da3c0c35716274775f4a62810804e7cc4d 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,9 +3,70 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 7,036 easyconfig files, for 1,228 different software packages, +The latest version of easybuild-easyconfig provides 7,313 easyconfig files, for 1,262 different software packages, 25 different (compiler) toolchains, 13 software bundles and 1 meta-package. +v3.3.1 (July 12th 2017) +----------------------- + +bugfix/update release +- added example easyconfig files for 6 new software packages: + - FastME (#4811), geopy (#4821), Miniconda2 (#4841), ngmlr (#4818), OpenCoarrays (#4799), Seurat (#4832) +- added additional easyconfigs for various supported software packages, including: + - ABAQUS 2017, GCC(core) 6.4.0, Keras 2.0.5, NCBI-Toolkit 18.0.0, numpy 1.13.0, Tensorflow 1.2.0 +- minor enhancements, including: + - add SVG and Statistics::Basic to recent Perl versions (#4796) + - remove buildopts from HDF5 easyconfigs, taken care of by updated HDF5 easyblock now (#4779) + - include joblib as extension in recent Python easyconfigs (#4805) + - changed moduleclass in mpi4py to better reflect what it is and to not confuse HMNS (#4807) + - get rid of references to 'hpcugent' organisation after move to github.com/easybuilders (#4815, #4837) + - add Rtsne as extension to R 3.4.0 (#4831) +- various bug fixes, including: + - use PYPI_SOURCE as source URL in Tensorflow easyconfigs (#4786) + - fix homepage for skewer (#4791) + - sync/fix source_urls & homepage in HDF5 easyconfig (#4800) + - fix ubsan error blocking build of GCCcore 6.1.0, 6.2.0, 6.3.0 with system GCC 7.1 (#4813) + + +v3.3.0 (June 26th 2017) +----------------------- + +feature release +- enable automatic style checks in easyconfig tests (#2506) +- added example easyconfig files for 28 new software packages: + - ada (#4594), Aspera-CLI (#4635), AUGUSTUS (#4624), ada (#4594), Bio-SamTools (#4637), Bpipe (#4590), BUSCO (#4624), + CNVnator (#4649), davix (#4755), EricScript (#4594), FUNWAVE-TVD (#4743), gmpy2 (#4609), gSOAP (#4755), + libsndfile (#4628), lpsolve (#4264), LUMPY (#4682), MaSuRCA (#4706), modred (#4729), MXNet (#4765), + NRGLjubljana (#4651), OrfM (#4703), Perl4-CoreLibs (#4670), prodigal (#4468), pydlpoly (#4756), SeqAn (#4603), + sharutils (#4745), Spyder (#4627), Tkinter (#4620), VariantMetaCaller (#4632) +- added new easyconfigs for existing toolchains: + - gimkl/2017a (#4646) +- added additional easyconfigs for various supported software packages, including: + - ABINIT 8.2.2, BLAST+ 2.6.0, Bowtie2 2.3.2, FFmpeg 3.3.1, NCL 6.4.0, Rust 1.18.0, SAMtools 1.5, VTK 7.1.1 +- minor enhancements, including: + - use 'git diff --name-only' and $TRAVIS_COMMIT_RANGE in Travis config to get list of changed files (#4606, #4619) + - add tuneR, seewave, soundecology, vcfR extensions for R 3.4.0 (+ libsndfile as dep) (#4628, #4680, #4747) + - also copy README for GapFiller (#4631) + - enable inclusion of version symbol by using --enable-ld-version-script configure option for LibTIFF (#4639) + - add SHA256 checksums for libpciaccess to discriminate from old tarballs that required running autogen.sh (#4688) + - fix NE_GLOBAL_DIR path for ne by also specifying PREFIX in buildopts (#4698) + - more (trivial) style fixes (#4761) + - avoid use of import in ANSYS & MATLAB easyconfigs (#4762) + - set $OMP_NUM_THREADS during CP2K test step via dedicated easyconfig parameter (#4763) + - avoid use of 'import' in BFAST easyconfigs, just strip of 'a' from version (#4764) + - add the docopt module to all Python 2017a easyconfigs (#4770) + - stop using deprecated 2-element tuple format in sources, use equivalent dict format instead (#4774) +- various bug fixes, including: + - fix typo in statsmodels source url (/sources/ -> /source/) (#4612) + - add location to DotLib.pm to $PERL5LIB for SSPACE_Basic (#4638) + - add missing /gnu/ ins ftpmirror.gnu.org source_urls, or use GNU_SOURCE where possible (#4653) + - consistently use --with-harfbuzz=no configure option in freetype easyconfigs (#4668) + - use --with-x=yes in R easyconfigs that include X11 as a dependency (#4701) + - remove '4.0' in tbb description (#4707) + - add lib sanity check paths for Debian compatibility in nettle (#4722) + - fix source URLs for HDF5 (#4749) + + v3.2.1 (May 12th 2017) ---------------------- @@ -710,7 +771,7 @@ feature + bugfix release Xmipp (#1489) - added easyconfigs for new (Cray-specific) toolchains (#1538): CrayGNU, CrayIntel, CrayCCE - initially supported software (using CrayGNU toolchains): CP2K, GROMACS, HPL, Python + numpy/scipy, WRF (#1558) - - see also https://github.com/hpcugent/easybuild/wiki/EasyBuild-on-Cray + - see also http://easybuild.readthedocs.io/en/latest/Cray-support.html - added new easyconfigs for existing toolchains: goolf/1.5.16, intel/2014.06 - added additional easyconfigs for various supported software packages: version updates, different toolchains, ... including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3 and v3.2.0, PETSc/SLEPc v3.5.3, WIEN2k v14.1 @@ -750,7 +811,7 @@ feature + bugfix release - various other enhancements, including: - don't define $LDSHARED in zlib easyconfigs (#1350) - this fixes the long-standing "no version information available" issue with zlib - - see also https://github.com/hpcugent/easybuild-framework/issues/108 + - see also https://github.com/easybuilders/easybuild-framework/issues/108 - add unit test to check that all extra_options keys are defined in EasyConfig instance (#1378) - add source MD5 checksums in all GCC easyconfigs (#1391) - speeding up the unit tests by avoiding rereading of same easyconfig file (#1432) @@ -761,7 +822,7 @@ feature + bugfix release - revert version of Libint dependency to 1.1.4 in CP2K v2.5.1 easyconfig (#1144) - added Java dependencies to EMBOSS easyconfigs (#1167) - don't list 'lto' as a language in GCC easyconfigs (#1286) - - related to the fixes in the GCC easyblock, see hpcugent/easybuild-easyblocks#535 + - related to the fixes in the GCC easyblock, see easybuilders/easybuild-easyblocks#535 - rename libint2 easyconfigs as Libint v2 easyconfigs (#1287) - fix mpi4py source_urls in Python easyconfigs (#1306) - consistently use CLooG 0.18.0 for GCC 4.8 series (#1392) diff --git a/easybuild/easyconfigs/TEMPLATE.eb b/easybuild/easyconfigs/TEMPLATE.eb index 69759ec8dacede3c37f1dfa04571dd71217ea158..06218cade8f8851893fd122f7986992178b6d128 100644 --- a/easybuild/easyconfigs/TEMPLATE.eb +++ b/easybuild/easyconfigs/TEMPLATE.eb @@ -1,5 +1,5 @@ # Note: -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # It was auto-generated based on a template easyconfig, so it should be used with care. easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index c096f680faf70cc1261b933e8208c38ce593c80b..630226b1ef4a79c2983e51f5675035c3439ea763 100644 --- a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index 935dda43400a08845722f43bfcfd642c61565f3a..0b631d51e00c7717962a6c70a52c175972560194 100644 --- a/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 42399e15399fa518994b360f1040c9371e1a8506..9a991355c4ff78259ad5e357c9e9077f91a9ede3 100644 --- a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index 02a64a2c6f8ced2a97460cdb38237e946ec2dd1e..3e655ad07ef721ec72422ed1153e9b3ae4be2302 100644 --- a/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index df3ffc4bcb2d69df5280fa3a23516c0ca9d0279f..07865181a73701b157a09d531f23f6b300fd484b 100644 --- a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index 732b0392516a8f01f9eabf34e9850a4d817e4243..947d1eff620bdc071e9995006318abdabccd5ef9 100644 --- a/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/__archive__/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index 916fcd7e489fe5b0f1ca868922f66c92f0eca2c2..ed2242bd756d715a6237a39ab6162c34284064d1 100644 --- a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index 74f9dffca6ad13347f80125b7c61acc369eb7231..1b91de72206435189853b3d08e22c271af98889b 100644 --- a/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index 118bf6fc3bbe22ff7a175e36d01eb96d6ede446d..93ba30e57eb8a37fa197fdfb8e7bced58d483c84 100644 --- a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index b6ba853506480a96264b65f9cee56e873072a4c6..56e2941ef63394f697c16261b0aba0c538d85d42 100644 --- a/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb b/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb index ea0ea197541b5f703bf5e7b3d51f928658637188..e76944242bb27b5261a8321c49cc984ba90334e3 100644 --- a/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/__archive__/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index a3b2575da68b89445c14c6a4e091a02782773d75..1c4e2656e2d7720683b8adb1fc7c6bc676000450 100644 --- a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index 06a9cd2e7e285f68e5c8a3e42999bcaef27c99dd..ec20c6b63db37ce68e8ab60b953780ec4b0723e5 100644 --- a/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb index 3d76340994583f9b78c44d794b5f1d780a35a901..3e1f898b70d5d807dba8b87f2dda726dd837c4d3 100644 --- a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb index 5d3bf8464428aa448b88fdb7b886ee05598ef69e..04156efea5a12b30cfff7412d25bf2824202f801 100644 --- a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb index 9a1f3c026948fd633558c646d9126c741eae66f6..fe0372bd55a91b28ee30910875b4ab889595ad71 100644 --- a/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb index 5bb04589642be93ccf0590414dcb7178bf4d58d6..9e6c729189786039e76fa4c80e39a4a4ef7402b8 100644 --- a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb index 9ff15e2434caaf21c5196f5662a37d19fc39e3cc..e6c61cba4a5cfd2ad428ffbe838040a5b478f104 100644 --- a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.6.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb index 000b5950bd50b7397dfeebe2987366de7e78d6fb..500bfbfd84ba0ffa468b82885c781d7bb1077a4c 100644 --- a/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/b/BWA/BWA-0.7.4-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb index 7d0f3c7ae36b3536411b1dc2a58b61e9edbc2611..cea77237c3e206091935f07bf85b8609f9aa6fa9 100644 --- a/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/BamTools/BamTools-2.2.3-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb index 57dbb97a1af7ad0a50b87d22e58407d6b7a4a499..104c33d2334adcc72ef03f222b2c939167cf6a52 100644 --- a/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index 8bcb1abedd6c92e30eb2cf82721a097e6db4d6d8..cd15f91b8ab4081d851b85502d62e4653e642c42 100644 --- a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index f4e01e36bd64f7234278432296e24c8d75b63311..df3e2919cb5392c78a0af695661035a0772096b2 100644 --- a/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index 99061a9473501539884d8728301524267c581d04..c7d6d3862510a676a590c90296e0a6237c16bb45 100644 --- a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index 15a2db61d2f30b9951ec62a56b6f73868b5eb438..30756c2e9edcd22c19b94e32ff2a59de7e063055 100644 --- a/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index e14fa5b01a995808fb06ca06aa909ad5031b968f..6cca8c54a5982deffc07c8db0c3ee8c7657001fd 100644 --- a/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index eae65e841feebf52f18713680922db8fda1b02fe..48b977fff3552bd9e1ebbac89743177644176c1b 100644 --- a/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index af12b0472e56e4b6b22fc9073144dc3d7a14d4c2..9c5bb1d47d6f7b3a7de7025014f1e9924f3c0f9d 100644 --- a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 8035182b62245ac3c4b8a514b4f17b0492dd2949..1b73cc3ce3ad8fab61dbd4f804949f85eabf7adb 100644 --- a/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index 8def4493c5c6b79b0e19962d0bce950efbeeecff..a151dccdced13fa42a4b5fd24f1c5448ca9d1f2c 100644 --- a/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index 0649ad44a0cf79a918cdd74a09fa833478165b28..802e525ec83c85866ddcfed00a67130d06b9fedb 100644 --- a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index cad6e2ddab6934b271d90ea7ae8a9bc7fa073c86..740b066bb41755c87fc45f9caed26d86b13ac9e1 100644 --- a/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index a41c761aaf8787cfb11113db3d37ed0aa21daf24..743a5cbdf20a539a734edb608be57c9e0db683f3 100644 --- a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index ebeb826b66cf8c176842c1649b6045a624edd871..0d9f914641084f24a1f8f633c27d4147737cb7ed 100644 --- a/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb index 94eaf15f8dd907b211f15c47454a24c5c574e60d..619d4f0b690c0ea8585c08f4a685e142027b0c82 100644 --- a/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb index df627c9d7bd888190ba61276aa0d7232d2b44119..dbfd632ffa9bd47541823742507afc1b0169f1a6 100644 --- a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb index ced2f5b555ece120f4a91023aeb89d47b233e7b5..6998de413887782bad550f82e19c77266c6b4140 100644 --- a/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index 2ef873d2da07e979d4a67c4bcf473d137ee0be67..c6c9980db547cd2dfb774c4d6559571934a74424 100644 --- a/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index bbabdb92a5bb91fc7c06ccb75100dcfcc9e3996b..501b2e5aee3fbc0c92d6de3a80ec7ac0c182a279 100644 --- a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 3011b90d1708fada7ac55372d4525da768a8ad60..801de9dbad4090a02ab83fb0f88433233233fae1 100644 --- a/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 98800f3677094c16f98f18e446dc53b907ea38c1..ae2a54ac333ef8da948422ee43ead7ea62fa71d6 100644 --- a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb index a3e495b0c6915ce9bf977b67961c4f5cd57438fc..b26666270b6fc8e2f249444a58ee367cc639c39d 100644 --- a/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 2112acc09695b87bd93eb95920a91ec27d73929b..10dd43c52c90bd8d1fc757f27548f953d34c4448 100644 --- a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 3cff32f247c9e6c47a91f4ab4fd3131907bcbd1a..e8c4aaf7514b923b2c39b700aa11e55bd8b09182 100644 --- a/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index 6e775a095b524731a063a8ccc9a2ccae19348940..8bc52abe18a4da67dc7efa9b7cc8819e8ad72213 100644 --- a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index 413650f9a5791b1b4312fce68976ff3048c9b3ff..c712b873ca5aace77b5e6020a14aefdfaec87bad 100644 --- a/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index 5ef397df32b73dc60df22828aca5eba887ff4a7f..e5a7971a87ea1c073efa9dd228a1bc5aedfbaae1 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index dc0eba6edb4fd2c4f9745164aa5b985516929959..b7c119348c28a587f48fea19ebe5b4f7f8d9b514 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index 5b960cc12d0d5416739c7ecab4a9bfc9ff0c2d7e..89786fb93c60a74fa8ce9ac2303eef2b8df54b3b 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index 21dd493eb1e4dbc95515625e0f740f55d9ea89ff..6b6b2358f8a830448982213c01e007335606203c 100644 --- a/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/__archive__/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb index 3cc61b864372d3299c7b17d084cc0401bd104679..37f1ee9f61361726bac9ed1a64d91b78f71df13c 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb index ad92c7352d47a758d5f873e1e657fa8050ade12e..77d246ec693c5fd2189336910997326b2b5d99e2 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb index 0db2cb2232438d36ef168245fa871a56e412a881..61116f3e1bfb37f045918095107c04576fe435b7 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb index 8868b07c8240c5d73b6cc0e131809415f26ac592..81a4069801775aeed07ff15ab842f101868c3866 100644 --- a/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb index b3d4b5ae5a81c57a982ddc2392369fdaf16d2bd3..1a891e9ce72190a1df8856e056b229e972b60b92 100644 --- a/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/e/Extrae/Extrae-2.4.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index 4bda1588f1b51881cd4f32756c460216c09e9b30..f2354a3ca7c93e16fdba8321996323cd9c0de826 100644 --- a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index b9a9acd1bf62f3e677559576d2067fb1876ad009..cb71a068e5f2b8e682332174c1ae92460341c77d 100644 --- a/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index 2278befdce0e5fbdd977372616faa3d8f1983508..e8870f1aa579b37a43b483f5d060cd74f9ae9c22 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index 7e35ed60fd80b1d607aa763938ecb5df96a1a611..a54cdbf4ed7eccf9179876d28fd571a0998a1046 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index 5c2723f3cc6e7408e6319fa6056746cfd55ec7ca..ef6bba63f9eb22446bcf79f8f4f7a422b3b80ab6 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index a55ddb37800b97cc1fe5961d212f43453bbda4fd..4b7bc2353aef2861fc2ca095ddb952a084d819bb 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index 5cb326d9c8ae384fe6e727e6d62b6e7f4e3b14b3..b4a874e64679abd6e53682ff5faf1a6dbd3f0fbc 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index 9a83935f73fe2ca8efce73b84d32fcbfcb70a1a9..6732b1f5164d6163b5bcfa4833dfd42965f9989a 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index e69629310c3990da3318282b19a57ed10df92b73..5e909d69c1068393d61445a739d4697f2593af88 100644 --- a/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index 10de39383d11326303389717b409a7c9048e2be9..c93754ab31138f98ab04aa43c11184c4591ae23a 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index 7d4a515bd7e91ac34fdf4f5aa594e0b3c865bb23..01e29400b7fea0f57d8462b131285ccc947773b7 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index c6a01d5cb91c69878611e7c21850c15b0c07a135..b62bee2ccc1a46abf3a1b23d242c7ffbeca391ce 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index f47fc727b16cf33980f826d3828b83f4ef306731..9ad41b86cd242266c9b45d9252915224df14a274 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index c1dc7fabd0d578cf999271591761eb80c16b6a26..6cff17d466be924dc7c80d9aa1c194e2b9fe55d2 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index aa2709aff926ae984216b4e024af1784e8831902..8a0d1877e123359a4ae33d34559f99006b3054af 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index 6a5829cb2188954f132d528c1a812aced1f84c57..8ea94fe3e34d01a47156bce1d7d74315ce1dd549 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index 897f8573da033b09c7af0233f9be6c5005489fbc..5d65ed4da5fe2188a978bb24daddeb013009de33 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index 1de33cf464ae3f06f69304e251155f9744e653bd..88e2d9aa1267a180fbd61945d07c4a95b73f1836 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 367a63d0a3105d2c8679d8f6093d32a7c8a474eb..b7e5aa7effe5d1c1632546a7b02a4220f149cb3f 100644 --- a/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/__archive__/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb index 3d384db2d68111b215a92d8166ab627f7834f4b7..926c752629c56152103bab6da45643dda45825ac 100644 --- a/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index 6e6602e1acd983955214b1bee562518a1b9e1b50..e5256d2d34e61aed8ef7d38c26c19d3f8ad51feb 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb index 08b113a1e93f2f673bcdc4b10ab3b88c2f127347..2fbf7d9d745205549e4c3bb8aea0fca4698f5506 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.7.12-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb index 6a6c3a3ab69669d35fabb016565620f01535831e..ccc2af2068b6773f51222a60fc102a71c575db77 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index 031cdf8a765ccf3a5e6cd8cdc5686b3d31b03d7c..5b33fd1e3d49f834133ed55d959804a4762e3303 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb index 04007162250989b6de0dd25217f84dfe8e1af1a5..9a65ddf609c5ec4ffe480b0d4ce62de102da1eff 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb index f5e0842b35f854f8f88231a5b44f031e71348bae..dd164a4f2a109198ed6346f2e3b3d7c4b41ae2c5 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb index 544929857c8e4f187f19f0e57dedd97c5034b5c3..e54476f0a499b8ea721834178078a3a582bd2d5f 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index 89c596b6175d7bb74d61ce907637bc128598d5b3..38680f091d53d5a9cc5995c676f9ce29f9cce5ab 100644 --- a/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index bd0bbb0ca0db768196110c0ee569439c878d7730..b91d8d2d53f13abccbc74f7579a5a7031171f632 100644 --- a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index 23b0d23f05c8f65830a7cb89f7aacfbc235cbb80..aeae930afdb5ec4c977c293574309217a230d4f6 100644 --- a/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb index 96eb4d4a94eacfadd401be6914af310f3421296d..d31a14029538ab90791dfd3e157811c5b446ff4d 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb index 627ddf488dec23f6ecdbcd4f5d674519e8843628..0748c110a0c9c3c4a7ede4afca17afa39d6cc534 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-gmpolf-1.4.8.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb index 282fc7aa9f07327a3b0145405a62383bbaa9d35a..7e61a60bf2b191eeeb4e688a77276cc7ef6515f6 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb index 2072304457c43c13088d55f82b7ac262a55c23ca..65b9cc7f01772ab3e639538418fcd79b417af8da 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb index 34e650a01462a5cc21c5e923cc97d4b3545bef70..6e06ea391d8f3effc6cc9e094956d53af9c56327 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.5-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb index e4663d467a4777adc3ad7a838bf85314f36b7060..34796e201dc787aa373c783007babae90850c2b5 100644 --- a/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index 9bc25a507114b8c75309d4389e804822118361cb..ee1aee5e7792c6e35dcd5965c1700a51f8713457 100644 --- a/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index c14d1e9c4c6ed6212428eef69bd0ef5f25018677..e4f9f9f4052f1bc47d8c0c492d250dc5b51b0e24 100644 --- a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index 882be30c22a76f5291b1462e5a2a464112ac6859..d640899214e7d6ab02f1d35778ea94ef6f57e5d0 100644 --- a/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index e86ac026834360890cdd38ebb3a53b1d0880a132..8976d6c40bb875da83303c996f8a1d271e190071 100644 --- a/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb index 67c9b4b47cec0ba52ff53ab2e00adb3ae1a53102..a1dacdc98c366718c78e1ceaafd29a9489063b71 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb index aa9857ce934feeaf53e99205d63f6adbd33b3c8c..7031201322e22d260b34fbe26e90b794ba7ea61a 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index 807ce3ee014df080a94e553bfaf42693b716fe69..6165515b54e555ac3900cf360853daf68551cf27 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index 3fb03037b9e60388f189914d9a25de3ec6c6c21d..2c5ec1ce14b6aaaa6a8cf7cedd7ff85bdbf2afd1 100644 --- a/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 974a5d000e3e345cdd6519e45c80a39f54d5a898..66d6e154387c1955ae9066157d68c8ceb73b747f 100644 --- a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index c6a180825f846625321f0cb27ca3c5b4161347d5..6c38105a14cf2a87808361c884ad31f8d7529dff 100644 --- a/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb index dec9b30b4f030fc4755d40ce5a6f1edf0f8d5ec6..07e343af8a25a23b4f3c79c7bcf7e4e328bcd462 100644 --- a/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/LWM2/LWM2-1.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 94a0908fdcc1054a4d760a06914c9033c6ec0573..7ebc542f5eb1d2197c0a524db55a35e31647d07b 100644 --- a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb index 3dc6b8939e99b2dab5168fd4013122d4324bdeaf..5080a2c53ccdde4a813ccb5932e17242ea55f7fb 100644 --- a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb index 91bc730999e90b356f9e90766951d30c17c4f105..4460cae67c8a3b1c35d7bf7e3dee653b2c2a4a25 100644 --- a/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/__archive__/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index 3fa3aba61edab5ad444c0b488967bfbd76980f6b..f332d73c30b896d53eb65b0791cff07d380e3fd8 100644 --- a/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index cca49e12bf84748b0d7f6a65a4a6d1f87af2a177..9f675f07bf75762ae4ee5359a5c37e4a92d9e9c3 100644 --- a/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 6aabc3ac11770d3a0ca4607479324fbe929f6e66..f9f4cbfcd6bed8a2c953f4863018544dda467a32 100644 --- a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index ded865424087c822cb3419ebee3dd85fea33535f..4f58924c6239b2833688ba873171b01b5002dfc0 100644 --- a/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb index 26e45a4b96e3bfe5a0d9a132651b07c56af0a934..f2db5e1bd1c86a2f62d7ed0432f3fe73c228d9ad 100644 --- a/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/l/libharu/libharu-2.2.0-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb index cdac53c708aadffc4870fd14cb0c232f6406663e..bba047b19e01a64eaba2fed736f20a43b0b961c2 100644 --- a/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/libunwind/libunwind-1.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index 3a532844038a11bfe30420664d603ea2b78ff34d..efb2f812e3ecc4a3720edd19fdae5d89d485abbf 100644 --- a/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb b/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb index cda9d848b716bd766ef479b3582168ac7ceef36a..63fd93faa8db80bbb9d1a83917238c4d42ae54fe 100644 --- a/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/__archive__/m/M4/M4-1.4.17-intel-para-2014.12.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index e322ccb0af241ec05739c25e9f076ad72b111852..d5b537170ad834c4b933ec6137e6fb3267bdf23a 100644 --- a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb index 232ec42670f95dfab7498b4e02dc3523d62caea9..3f99722ada7cfa6ecff0e810f1ce4ecf1f2e0678 100644 --- a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb index 3edc17b8e9ded09045ccad28077efa74d3e81ad3..5c54eded488f7e76f9bd28929c538de5baaf721d 100644 --- a/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index 4a37b2243da67504c86aa7d2c338b4aa8c9ba376..822a714f439b9d3612b20b64899b174ce3326e06 100644 --- a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index 2079802769802ca95ca3c600a2aea982381aed59..0ee39c9be95d8fcd720926fcc1147a44588beddf 100644 --- a/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb index df55442b24147a83a37f828ecb1ac80615e7adfc..e52c13195536ed64d944272126e8981edbc476d9 100644 --- a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb index b12e9042ad312b0f8bfffe67da785d5ad5d809ae..e1bfaff6af61ff1cd9d1689cc23f7b239f9e33a1 100644 --- a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb index 578f64de526f4b8a241114159d8d5f60eff6d9f7..6402f3b4f03cadf32b5ee88972c388cce2bd6629 100644 --- a/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/__archive__/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb index cd0624726e820f2c189a61c5b5573a4d397de395..355411d6258d5edafd98f040c8700d45cc07a672 100644 --- a/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb index a43b075cea723b5580bccf5f3a82a037ec17dfab..2f8eece7c4a348253616704d6bdc9bbd87ff57a4 100644 --- a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb index aa9f2cf5ecf7737088e6855e5f11aac437cc480a..d2bcadda2ecf8c709e55f579741d8bcb0c2f98b9 100644 --- a/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index a05d90692447fbb4fe82b088cb23adf5dac72871..730be02be38f5377416912655bc18de1440f0f32 100644 --- a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb index 9830f3790462fe93b701a833b28a4b8a2ec24c1e..3fd39ef56e2f3b47cc651a12e8f85f95b65f0097 100644 --- a/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index b4ca6871ed0a1640d0f001d4f7cff2d5b2ef21cd..e5f4cf24043195a8794243ed710fde5e83b77b25 100644 --- a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index f14049a15f0565412ac712b03d72dc5a9daf4835..0f7c4a1cb52d355e35a74752856ffe140f921b0a 100644 --- a/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index ce0c799863b583dfa85efea9a83d2fc4016999c2..8c8c8d6b642b79caea763fa8a64eb9707361cad1 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb index 261d1e65aa9bad056693c684c7f8f22b3e207bbf..05b4d75cdbf9c449aab740d79252960ac75d2bf5 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb index ec4bc1b519c771f48b1705e0ab7cc44228112bc0..f62ff8c098a0f9ce321666cf391c676c3ed31841 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb index 8210b35b6688f5241ecd7cb9b6f92b662f9aa6e9..d98adb2215ea9a569d04b13d122ff1596ebe6df8 100644 --- a/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/__archive__/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index c4688cb405a6c9879ab9e44fbd5eb73666be1759..aaef538e3a65c5289586f0627b4e6e9f33f3540c 100644 --- a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index 7d8e37d42dacb7b6effc2e39172dee842585cc8d..81777b494772cad66c5af649c7337b51f9b6f6a8 100644 --- a/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index 07e2cab7c08dee79d0c3c6504fb5aa2c0b3ad4a0..ea62784fb776fb5471a98ce1905331b39cce133e 100644 --- a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb index 2a997d6bdf1a0cf67ba55a21dfb6a5ca83c97e83..6edb4f983c52411a01134da94a81671ba8e68877 100644 --- a/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb index 0361dfc86a352e3e26b71612ff5f55d667347247..6ba1cb4abdf6829566ca30ed909661ab6b16c314 100644 --- a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb index 45442d42791d35b569f9bfa459a4bb84d115cb3a..14ec77b8ce07cba3e290b39e90c40868f7911f2d 100644 --- a/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb index e12b8e7289e0a1905346ed5eb5d1ea29d9d1f32f..e14fc7614e201c82c6e51a3fb5ccd9bd09a5bb24 100644 --- a/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb index 88c6562214eff64630b5133dc28957acee55f984..ec87a9a0a1f6a2e400914ec3661ec2699f8e3f9c 100644 --- a/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/o/OTF2/OTF2-1.2.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index 4cd82eaeb6c609eea5e0c56e4a2298f7fa30139d..e509bee0685f229f3674ef4bc1b2172e90b066bc 100644 --- a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index 7a5c98d762a2fbbb45cb5349f3602ec022da6dc7..767ac0cf8a5eb143d89ec0b5a6911db04d844d1c 100644 --- a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index c8c6b3d56944b914fbfabae888251d8956d374fd..34593b5431da9479ca603d2e1aac8a10e465d6d8 100644 --- a/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb index eef9a27cd74d3ec567c4ae0d2d72a3d9a96e147f..9c604d4a85d7d0d5c48871e44170e7869129932d 100644 --- a/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb index 71cade10ffdae658b308f3c51c6cf056d8fbf53c..852c7755e0633ea0c6d1650f261b47b7a5e33178 100644 --- a/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli , diff --git a/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb index 909fa6783b37ef85093457ae3a34603a493e588f..63102afdbad7153c3cc6090d24b3f0eccad7008f 100644 --- a/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index 3804c6ccaa2a0056108ec6aeea6b432f1ea2082a..55ce03a71156cfd607f217325302fe905541bbc2 100644 --- a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb index 94c10ffcedc7be6d56883de184e5756b61663a38..fb701cf2e0b85a3514f24f8d0efa3856b9de5f7a 100644 --- a/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index 5f373bcc46a71384f21ce6e739442aa4baf20beb..d87f890d0f66c19907712fb9405cedab54839480 100644 --- a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index 71400b6f392a6695e0cfe75373a043e9401e6d2a..27678245baed577fc605e17a17be5368f375e465 100644 --- a/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index 495ee12fa8300aff7656baa054e4b39c44c54c8b..2d7908e75a154419f2980a4b8d73d65b03e4be98 100644 --- a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index b9570c368a8f5e5640d8f51153a4936a817fdc98..3a8baa07376155b0a05977a6f06dfc5beca638b9 100644 --- a/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb index 8da8e28b172502449fc4812c52d887fa13b982c8..336f9b970cb40fa9beed796b416e7e21fc4ba775 100644 --- a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb index 3fda9e525f55226c70753bbd66a11ce320bf1dac..9210bc4b2ad5f4f3208bfd81357174acb11e55bf 100644 --- a/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb index 26b61def41ea708e3bc67eaa99ee54c56c18f737..b264014712a26b897d6dd479e4007821d579f340 100644 --- a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb index b4c09a0c490a87ad6a1fed26d6589b74b9b01523..a6bb75721df925cec259957c4c2d7ddd20026c23 100644 --- a/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb index 4c327fa96cecbdd1f4758a8a7fd7addccd06eebb..dbfcd3190c677fcd8f53a48261adc8135263ee44 100644 --- a/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Score-P/Score-P-1.2.1-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index 0d2c3773f892039150121b4e10824318b0da8ef2..7d558ac71a1a9926dea4d1c0fc2aad0f1c963d88 100644 --- a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index e7734dc52655a9639d12aa71be2814770bb9be7b..4b640a501ff44c08cb2083751bbd44fd7a96b9bf 100644 --- a/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb index b8a2739b01a61c6668f79f30c4d2eab884b07c0b..ccfd573f79b3e77f15fb0c80ff6441b17347a09f 100644 --- a/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/TAU/TAU-2.22.2-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb index 9c40f2197ef0a4c1e301bcc121586ef78fd6a29c..70a6e42479d92253e74285316a0add51b325f7c0 100644 --- a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb index 79b6f833d1343a3441e452bd09ea62223f76dd22..76bcf790553664f60399bc64104838d2e0f74ae6 100644 --- a/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/t/Tar/Tar-1.26-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index 2ba3b07819c3ac2d6477bec8bf02934cfcca2d3d..9eecf232370331501eabf7632085d9e7c3708560 100644 --- a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index 76567e2542e7e4ef140e5681a00f7db4dac1b48f..dcf1959131750399d22051c052b07e903bd95bb2 100644 --- a/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb index 66720a2d3718ab65a0ebbb0735456c85e89481b3..81bacb467eeea4bb8d868cbd3cd2f35b37234f3b 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb index e8fe446e8b55e9877d3db5b9295236aac6bfffbd..dae024dd0952708234d9f9ec140863023de80880 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb index 42dc94a346cd13aab3baae868d3a05eaec260fdd..b878f2b439f034e5aa5a6549a1442b1aa3f472b2 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb index 37494982ed454f6f8cb4755b4a1e5f578f4feb4d..a65b416429d6c7abf8c8c4c775953a0c712a8c0e 100644 --- a/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/__archive__/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb index a52aa694fc5d3a94b21c5de21669e9c3b9e44deb..bfa34ecda123acc06631980018c419d58fa80e70 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb index b9d1c0a57407f0f92ab422ebbe4873e570e09e26..5c9413974d47707b793076b92ec60081d67f5587 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb index 7a9b90a956361de34076f73ba3e6682799024a42..a61ec089a4676c3c13429390be4064a7dd2afeeb 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb index f166af224856a7a0fc7d74d96cd95cc7dd7ff09f..09c2b01c0338023d92182a3a9f9c2d5d91fb8487 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb index 193e10df496f413f72ab55aae80f4a629554b09e..b2201ef04e47475c0e448af2548406b2f00dd000 100644 --- a/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/__archive__/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index d0373056bbef607f32a7750eb66314cf03559756..34a7df2c71fc66a1c3db1ff3e36c3c66ee316027 100644 --- a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index 2a354f444a06175078d44db5c0c8b9a580611df8..64d04fb6e5d4e117d8601a92ae5565844874a5e7 100644 --- a/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb index fb24b1b64c1ab6a19d291438e3c86d9a8bf3ba37..02603d970ff7650eb91151a859e4ab1d9e1b7593 100644 --- a/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index 831d9459886c15fa08109087d28c60a471fb2908..f5fe5e11edd5d9760a1585f40beba1d0e286968c 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index 4ef81eed3625f28143ecceb5a2d68bb66c3e1fa9..1f1889615e12beb16b73fa4ea393cf063365be66 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index 07d51ab2d9a777782bcf78f857b66f8b0a312bb3..cc1196047f3d979c668103e2af3d4bd07ffb9b01 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index b01834e9d77a1cecc7b6590daf7b0610d9d68cda..a9f03862282f5e7a7460f2a9949898d6ace50ce1 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index 9b14309ef161b368657e0fd8da74409cdecd529f..1243dcfcb808ba1db123b8c56984d783430f6113 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index 6b6c92bf80f68b8c203ec614ef2590d02923a801..32ef6ee8bd12138ee4c5bc4c05a6ee75a2f59065 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 87fdb08561b8fee26164cee3f57b404de9b85ee5..fd8cedb7a9b9d83b302abd83a364a216986b3aa7 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb index 3a3d16b550a0946e13adbc39197d3a714a6ff91b..4f5a351349290cfbcd038522f97f5fa3a3be4475 100644 --- a/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Ghent University # Authors:: Fotis Georgatos , Ward Poelmans diff --git a/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb index 02bc1f21cc036e2509ecf2f602c48678ebe2955b..4f6d2fd3dbb29cba2a3169860893039d4a7dc43a 100644 --- a/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/VampirTrace/VampirTrace-5.14.4-gompi-1.4.12-no-OFED.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb index 898d4cda785e6fa78b88a20b75df6b7b307008b0..9c6279fddfbb5ebd7e52172c97d2ab78bf6d3294 100644 --- a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb index 96163b744cff0d10e33009269e410e6da9b8b057..3179b976584bd5beee2f8fd602e615ad191083f3 100644 --- a/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 795671412f1fd48108303b79b2526bfb540bca05..e2b533028e9182c619de8296fde6322b8382c4ae 100644 --- a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index b7723d7af326ac6b6c0450344589c94b2f1fe8d1..c767b5e210a875fcaf71996063abbfaa382f009d 100644 --- a/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 66555db5aacfb9d5cf3fec23ac30341691df44cf..19e0844ca8c6e9cde4240a46268732644b7057c6 100644 --- a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -22,7 +22,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 031d7e98f103d8f12acf6ca25af97e2d48b13a2f..0800e6ccb7dbdbbb20d0c76dd7c34d2614359245 100644 --- a/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -22,7 +22,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index e43780a277b7fb931bb5e4ee1bf1ec45f3ff94fa..daf144962d310e55dfb45332a1fb94e0863d6a11 100644 --- a/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/__archive__/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb index 5efafeb0f0b7058b25a3a189e61f88fcd24a9bea..405a8b5fde166d5b55984853845ee7bf81e1c6ae 100644 --- a/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/__archive__/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index e2bfa1c5fb273575a4c291e337500a3e6f12c742..56100a1cb57db4ea7b15c63b11eb06628813bd46 100644 --- a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index 5b66cf87a7385755250cf7a76bd86a4242eff1b9..70d7963092aa349a34fe6a37156730f275edf3d4 100644 --- a/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index b70a682d96ccb217efb75557d3537095d84b994f..c293d54a8c4b55fb4b406a9f90a50e60314bb6aa 100644 --- a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 9a77005cb584bd2b9f755e8899bb953f91b55920..0719af199a2a2b757b948a51c1a32b8193823b5c 100644 --- a/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/__archive__/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-2017-hotfix-1721.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-2017-hotfix-1721.eb new file mode 100644 index 0000000000000000000000000000000000000000..c0357522cc10853174bfec667609c41914c0060f --- /dev/null +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-2017-hotfix-1721.eb @@ -0,0 +1,24 @@ +name = 'ABAQUS' +version = '2017' +hotfix = '1721' +versionsuffix = '-hotfix-%s' % hotfix + +homepage = 'http://www.simulia.com/products/abaqus_fea.html' +description = """Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit + dynamics FEA.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = [ + '%(version)s.AM_SIM_Abaqus_Extend.AllOS.1-6.tar', + '%(version)s.AM_SIM_Abaqus_Extend.AllOS.2-6.tar', + '%(version)s.AM_SIM_Abaqus_Extend.AllOS.3-6.tar', + '%(version)s.AM_SIM_Abaqus_Extend.AllOS.4-6.tar', + '%(version)s.AM_SIM_Abaqus_Extend.AllOS.5-6.tar', + '%(version)s.AM_SIM_Abaqus_Extend.AllOS.6-6.tar', + # hotfixes + '%%(version)s.FP.CFA.%s.Part_3DEXP_SimulationServices.Linux64.tar' % hotfix, + '%%(version)s.FP.CFA.%s.Part_SIMULIA_Abaqus_CAE.Linux64.tar' % hotfix, +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index 9ff4e547c06ce0e0846fd561ef1d6fad0c3fff74..4802aa3c15b449f069663f46cadf0183d0f0a950 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -22,9 +22,11 @@ description = """Abinit is a plane wave pseudopotential code for doing toolchain = {'name': 'dummy', 'version': 'dummy'} -# eg. http://ftp.abinit.org/abinit-7.0.3_x86_64_linux_gnu4.5.bz2 -sources = [('abinit-%s_%s.bz2' % (version, versionsuffix[1:]), 'tar xfj %s')] source_urls = ['http://ftp.abinit.org/'] +sources = [{ + 'filename': 'abinit-%%(version)s_%s.bz2' % versionsuffix[1:], + 'extract_cmd': "tar xfj %s", +}] sanity_check_paths = { 'files': ["bin/abinit"], diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index b5b040ce63bcea694f619032ce0e1b79d181de19..bb745faa335f7d2d4b550c39c14ade6d6c8c27b5 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -24,9 +24,11 @@ description = """Abinit is a plane wave pseudopotential code for doing toolchain = {'name': 'dummy', 'version': 'dummy'} -# eg. http://ftp.abinit.org/abinit-7.0.5_x86_64_linux_gnu4.5.bz2 -sources = [('abinit-%s_%s.bz2' % (version, versionsuffix[1:]), 'tar xfj %s')] source_urls = ['http://ftp.abinit.org/'] +sources = [{ + 'filename': 'abinit-%%(version)s_%s.bz2' % versionsuffix[1:], + 'extract_cmd': "tar xfj %s", +}] sanity_check_paths = { 'files': ["bin/abinit"], diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index 051d0927bf1ecbf0e44158a55db2266257116879..1d942af521ced3d76b780565abb8ecb69f46a093 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -25,9 +25,11 @@ description = """Abinit is a plane wave pseudopotential code for doing toolchain = {'name': 'dummy', 'version': 'dummy'} -# eg. http://ftp.abinit.org/abinit-7.0.5_x86_64_linux_gnu4.5.bz2 -sources = [('abinit-%s_%s.bz2' % (version, versionsuffix[1:]), 'tar xfj %s')] source_urls = ['http://ftp.abinit.org/'] +sources = [{ + 'filename': 'abinit-%%(version)s_%s.bz2' % versionsuffix[1:], + 'extract_cmd': "tar xfj %s", +}] sanity_check_paths = { 'files': ["bin/abinit"], diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb index f598583eb777fa56b745387e13c0a5ffe36b3310..30945704b7a186bc6d912da6538482474a179d8f 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-8.0.8b-foss-2016b.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-8.0.8b-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..461d6b226edfe6336646669f0a53211e29520071 --- /dev/null +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-8.0.8b-foss-2016b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ABINIT' +version = '8.0.8b' + +homepage = 'http://www.abinit.org/' +description = """ABINIT is a package whose main program allows one to find the total energy, charge density and + electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional + Theory (DFT), using pseudopotentials and a planewave or wavelet basis.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://ftp.abinit.org/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['abc9e303bfa7f9f43f95598f87d84d5d'] + +configopts = "--with-mpi-prefix=$EBROOTIMPI/intel64 --with-trio-flavor='etsf_io+netcdf' --with-dft=flavor='libxc' " +configopts += '--with-netcdf-incs="-I$EBROOTNETCDF/include -I$EBROOTNETCDFMINFORTRAN/include" ' +configopts += '--with-netcdf-libs="-L$EBROOTNETCDF/lib -lnetcdf -L$EBROOTNETCDFMINFORTRAN/lib -lnetcdff" ' +configopts += '--with-libxc-incs="-I$EBROOTLIBXC/include" --with-libxc-libs="-L$EBROOTLIBXC/lib -lxc" ' +configopts += 'FCFLAGS="-ffree-line-length-none" ' + +dependencies = [ + ('libxc', '3.0.0'), + ('netCDF', '4.4.1'), + ('netCDF-Fortran', '4.4.4'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['abinit', 'aim', 'cut3d', 'conducti', 'mrgddb', 'mrgscr', 'optic']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-8.2.2-foss-2016b.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-8.2.2-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0042cb41f3db88c0d35663c8a55ae5c6ce225f83 --- /dev/null +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-8.2.2-foss-2016b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ABINIT' +version = '8.2.2' + +homepage = 'http://www.abinit.org/' +description = """ABINIT is a package whose main program allows one to find the total energy, charge density and + electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional + Theory (DFT), using pseudopotentials and a planewave or wavelet basis.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://ftp.abinit.org/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['5f25250e06fdc0815c224ffd29858860'] + +configopts = "--with-mpi-prefix=$EBROOTOPENMPI/intel64 --with-trio-flavor='etsf_io+netcdf' --with-dft=flavor='libxc' " +configopts += '--with-netcdf-incs="-I$EBROOTNETCDF/include -I$EBROOTNETCDFMINFORTRAN/include" ' +configopts += '--with-netcdf-libs="-L$EBROOTNETCDF/lib -lnetcdf -L$EBROOTNETCDFMINFORTRAN/lib -lnetcdff" ' +configopts += '--with-libxc-incs="-I$EBROOTLIBXC/include" --with-libxc-libs="-L$EBROOTLIBXC/lib -lxc" ' +configopts += 'FCFLAGS="-ffree-line-length-none" ' + +dependencies = [ + ('libxc', '3.0.0'), + ('netCDF', '4.4.1'), + ('netCDF-Fortran', '4.4.4'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['abinit', 'aim', 'cut3d', 'conducti', 'mrgddb', 'mrgscr', 'optic']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-8.2.2-intel-2016b.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-8.2.2-intel-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ea50a6af7563d0ada00c44142ac0959f9b50898 --- /dev/null +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-8.2.2-intel-2016b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'ABINIT' +version = '8.2.2' + +homepage = 'http://www.abinit.org/' +description = """ABINIT is a package whose main program allows one to find the total energy, charge density and + electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional + Theory (DFT), using pseudopotentials and a planewave or wavelet basis.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +source_urls = ['http://ftp.abinit.org/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['5f25250e06fdc0815c224ffd29858860'] + +configopts = "--with-mpi-prefix=$EBROOTIMPI/intel64 --with-trio-flavor='etsf_io+netcdf' --with-dft=flavor='libxc' " +configopts += '--with-netcdf-incs="-I$EBROOTNETCDF/include -I$EBROOTNETCDFMINFORTRAN/include" ' +configopts += '--with-netcdf-libs="-L$EBROOTNETCDF/lib -lnetcdf -L$EBROOTNETCDFMINFORTRAN/lib -lnetcdff" ' +configopts += '--with-libxc-incs="-I$EBROOTLIBXC/include" --with-libxc-libs="-L$EBROOTLIBXC/lib -lxc" ' + +dependencies = [ + ('libxc', '3.0.0'), + ('netCDF', '4.4.1'), + ('netCDF-Fortran', '4.4.4'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['abinit', 'aim', 'cut3d', 'conducti', 'mrgddb', 'mrgscr', 'optic']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index 6d7dc91575a9cbdfa0e8bf4ceb0af6c397669036..e205e2d8ac2c3914f2684d1937ff65111d259584 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index f7709440c32f09da9fddd408ac08b19a347bfb5e..5a1d132b7c455b67ad9dfe0e596d6cc5b664e7d0 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 93b76ef8beaa1b479c12592a4e15f2cab0d38089..4ebae49b2a9594fd63b45b23ec9bcf6c655e14b8 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb index 6b5c1c6d525616ee6854448663e4077c8042721d..a55aa9d2cf66115c9031359d917792b9a78ae769 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.7-intel-2015a-Python-2.7.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb index c055778c8e3e05e3a5576bff202b90062d934395..5995eab527216a3c89e6e3f26453725bc1ecae83 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.5.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Maxime Schmitt , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb index aa09a6e789d150412b669eeede3fcf142adbe66d..5bd2d17aaf8ba15ce11de721bc7b40e35190ece9 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.9.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Maxime Schmitt , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb index c680dc7f268aafb7fea8dd891731387ed32ef438..d880a919fb5c450ecebb2a8d45faf1582facbc7a 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'PackedBinary' diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb index f082a4fbeb7e3288ce68e7cccf677fd518b976b8..686bb454342efd723a1d6bdf7388e6d10b2c62d6 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'PackedBinary' diff --git a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb index 6fb42921f6b33fdea0a5dd694689d564e5aee6ef..33c6b93585a0627640067eedc87637e02db876ef 100644 --- a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb index 0227efebd7e0c85b6fcea15f72a1f01e73184588..27afe82b2dfc02f2ae54561c55615e4afd52d095 100755 --- a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb +++ b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-52488-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index e1a0148b757a055bbf655b4299eaf7a4bb487adf..440bc7a909e2338730bb8f08f1fb60229092e321 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index 7fce76229ecac59e6ac658af9f10f023594fcc9c..d767191d1bef0d6a5dd4d04c323c786eaede2643 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb b/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb index 673a19b69da9037dd3537da93761782f1bfaa22e..944ad05e35bb9beea06262f36ddeaf2aa35bb882 100644 --- a/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb +++ b/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb @@ -10,10 +10,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} # create a zip file from the 3 install iso files. # make sure all files of the iso's are in the same directory. -sources = ['ANSYS-15.0.zip'] - -import os -license_server = os.getenv('EB_ANSYS_LICENSE_SERVER', 'license.example.com') -license_server_port = os.getenv('EB_ANSYS_LICENSE_SERVER_PORT', '2325:1055') +sources = ['ANSYS-%(version)s.zip'] moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..e00f225a1303aacc8db4c5e2cf01e09e904fe72e --- /dev/null +++ b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'ANTLR' +version = '2.7.7' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.antlr2.org/' +description = """ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) + is a language tool that provides a framework for constructing recognizers, + compilers, and translators from grammatical descriptions containing + Java, C#, C++, or Python actions.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.antlr2.org/download/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['%(name)s-%(version)s_includes.patch'] + +dependencies = [ + ('Java', '1.8.0_131', '', True), + ('Python', '2.7.13'), +] + +configopts = '--disable-examples --disable-csharp ' + +sanity_check_paths = { + 'files': ['bin/antlr', 'bin/antlr-config'], + 'dirs': ['include'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb b/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb index 730a5cb604661e816f5c4e11e508a857ad1af81f..53c476990033c25a3665a7f79ab2f786953d3746 100644 --- a/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb +++ b/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f15d1e1ba65f33da771fe6e3e6bb541830c04b27 --- /dev/null +++ b/easybuild/easyconfigs/a/ART/ART-2016.06.05-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ART' +version = '2016.06.05' + +homepage = 'http://www.niehs.nih.gov/research/resources/software/biostatistics/art/' + +description = """ + ART is a set of simulation tools to generate synthetic next-generation sequencing reads" +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.niehs.nih.gov/research/resources/assets/docs/'] +sources = ['artsrcmountrainier%slinuxtgz.tgz' % ''.join(version.split('.'))] +checksums = ['69aede60884eb848de043aae5294274b7ca6348b7384a8380f0ac5a4dfeff488'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GSL', '2.4'), +] + +sanity_check_paths = { + 'files': ['bin/aln2bed.pl', 'bin/art_454', 'bin/art_illumina', + 'bin/art_profiler_454', 'bin/art_profiler_illumina', + 'bin/art_SOLiD', 'bin/combinedAvg.pl', 'bin/empDist.pl', + 'bin/fastqReadAvg.pl', 'bin/map2bed.pl', 'bin/summation.pl'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.13.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/a/ASE/ASE-3.13.0-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..4228f89c2f47249ec6bcb4193daa20b78d2a36dd --- /dev/null +++ b/easybuild/easyconfigs/a/ASE/ASE-3.13.0-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'ASE' +version = '3.13.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://wiki.fysik.dtu.dk/ase' +description = """ASE is a python package providing an open source Atomic Simulation Environment + in the Python scripting language.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['e946a0addc5b61e5e2e75857e0f99b89'] + +dependencies = [ + ('Python', '2.7.12'), +] + +sanity_check_paths = { + 'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb b/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb index a251f6e6b49696865871a175264b70f8293420ef..86e01377a6645a207ebe72d44039942323855155 100644 --- a/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb +++ b/easybuild/easyconfigs/a/ASHS/ASHS-rev103_20140612.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..e754db2e6df4e5ffaca3565dd8850348df8536f3 --- /dev/null +++ b/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'AUGUSTUS' +version = '3.2.3' +versionsuffix = '-Python-2.7.13' + +homepage = 'http://bioinf.uni-greifswald.de/augustus/' +description = "AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://bioinf.uni-greifswald.de/augustus/binaries/'] +sources = [SOURCELOWER_TAR_GZ] +patches = ['AUGUSTUS-%(version)s_fix-hardcoding.patch'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Boost', '1.63.0', versionsuffix), + ('SQLite', '3.17.0'), + ('GSL', '2.3'), + ('SuiteSparse', '4.5.5', '-ParMETIS-4.0.3'), + ('lpsolve', '5.5.2.5'), + ('BamTools', '2.4.1'), +] + +skipsteps = ['configure'] + +prebuildopts = "unset LDFLAGS && unset LIBS && " +buildopts = 'COMPGENEPRED=true SQLITE=true ZIPINPUT=true CXX="$CXX" LINK.cc="$CXX"' +installopts = 'INSTALLDIR=%(installdir)s' + +sanity_check_paths = { + 'files': ['bin/aln2wig', 'bin/augustus', 'bin/bam2hints', 'bin/bam2wig', 'bin/espoca', 'bin/etraining', + 'bin/fastBlockSearch', 'bin/filterBam', 'bin/getSeq', 'bin/homGeneMapping', 'bin/joingenes', + 'bin/load2sqlitedb', 'bin/prepareAlign'], + 'dirs': ['config', 'scripts'], +} + +modextrapaths = {'PATH': 'scripts'} +modextravars = {'AUGUSTUS_CONFIG_PATH': '%(installdir)s/config'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3_fix-hardcoding.patch b/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3_fix-hardcoding.patch new file mode 100644 index 0000000000000000000000000000000000000000..85bff50668dbc530ad7048bb58a5fb755fd7ab2b --- /dev/null +++ b/easybuild/easyconfigs/a/AUGUSTUS/AUGUSTUS-3.2.3_fix-hardcoding.patch @@ -0,0 +1,57 @@ +fix hardcoded compiler names in Makefile + don't try to link binaries in /usr/local/bin +author: Kenneth Hoste (HPC-UGent) +--- augustus-3.2.3/auxprogs/compileSpliceCands/Makefile.orig 2017-05-02 20:40:04.471986962 +0200 ++++ augustus-3.2.3/auxprogs/compileSpliceCands/Makefile 2017-05-02 20:40:30.812468384 +0200 +@@ -1,8 +1,8 @@ + compileSpliceCands : compileSpliceCands.o list.h list.o +- gcc $(LDFLAGS) -o compileSpliceCands compileSpliceCands.o list.o; ++ $(CC) $(LDFLAGS) -o compileSpliceCands compileSpliceCands.o list.o; + # cp compileSpliceCands ../../bin + compileSpliceCands.o : compileSpliceCands.c +- gcc -Wall -pedantic -ansi $(CPPFLAGS) -c compileSpliceCands.c ++ $(CC) -Wall -pedantic -ansi $(CPPFLAGS) -c compileSpliceCands.c + + all : compileSpliceCands + +--- augustus-3.2.3/auxprogs/homGeneMapping/src/Makefile.orig 2017-05-04 10:12:47.633497259 +0200 ++++ augustus-3.2.3/auxprogs/homGeneMapping/src/Makefile 2017-05-04 10:12:56.313614398 +0200 +@@ -7,7 +7,7 @@ + # database access for retrieval of hints + # SQLITE = true + +-CC = g++ ++CC = $(CXX) + + # Notes: - "-Wno-sign-compare" eliminates a high number of warnings (see footnote below). Please adopt + # a strict signed-only usage strategy to avoid mistakes since we are not warned about this. +--- augustus-3.2.3/auxprogs/joingenes/Makefile.orig 2017-05-04 10:46:28.700811811 +0200 ++++ augustus-3.2.3/auxprogs/joingenes/Makefile 2017-05-04 10:46:35.380911653 +0200 +@@ -1,4 +1,4 @@ +-CC=g++ ++CC=$(CXX) + CFLAGS=-Wall -std=gnu++0x + + all: joingenes +--- augustus-3.2.3/Makefile.orig 2017-05-04 09:54:03.568352171 +0200 ++++ augustus-3.2.3/Makefile 2017-05-04 09:54:11.968330382 +0200 +@@ -17,13 +17,13 @@ + install: + install -d $(INSTALLDIR) + cp -a config bin scripts $(INSTALLDIR) +- ln -sf $(INSTALLDIR)/bin/augustus /usr/local/bin/augustus +- ln -sf $(INSTALLDIR)/bin/etraining /usr/local/bin/etraining +- ln -sf $(INSTALLDIR)/bin/prepareAlign /usr/local/bin/prepareAlign +- ln -sf $(INSTALLDIR)/bin/fastBlockSearch /usr/local/bin/fastBlockSearch +- ln -sf $(INSTALLDIR)/bin/load2db /usr/local/bin/load2db +- ln -sf $(INSTALLDIR)/bin/getSeq /usr/local/bin/getSeq +- ln -sf $(INSTALLDIR)/bin/espoca /usr/local/bin/espoca ++ #ln -sf $(INSTALLDIR)/bin/augustus /usr/local/bin/augustus ++ #ln -sf $(INSTALLDIR)/bin/etraining /usr/local/bin/etraining ++ #ln -sf $(INSTALLDIR)/bin/prepareAlign /usr/local/bin/prepareAlign ++ #ln -sf $(INSTALLDIR)/bin/fastBlockSearch /usr/local/bin/fastBlockSearch ++ #ln -sf $(INSTALLDIR)/bin/load2db /usr/local/bin/load2db ++ #ln -sf $(INSTALLDIR)/bin/getSeq /usr/local/bin/getSeq ++ #ln -sf $(INSTALLDIR)/bin/espoca /usr/local/bin/espoca + + # for internal purposes: + release: diff --git a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb index 738b03c0ca0c448c1742c90bdc3519d0580ff17b..50e7938a222f519f6a7641c9a22b6b31c6fbcf81 100644 --- a/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/a/AdapterRemoval/AdapterRemoval-2.2.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..ee8b4d3fb722a092af9a0ae3b147c729e55f8e5b --- /dev/null +++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-7.950.1-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,24 @@ +name = 'Armadillo' +version = '7.950.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://arma.sourceforge.net/' +description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards + a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, + as well as a subset of trigonometric and statistics functions.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = ['http://sourceforge.net/projects/arma/files'] +checksums = ['a32da32a0ea420b8397a53e4b40ed279c1a5fc791dd492a2ced81ffb14ad0d1b'] + +dependencies = [ + ('Boost', '1.63.0', versionsuffix), + ('arpack-ng', '3.4.0'), + ('Python', '2.7.12'), +] + +builddependencies = [('CMake', '3.7.2')] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb b/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f0e52ebffa1f8ff557908b0f3e4a564382f7711 --- /dev/null +++ b/easybuild/easyconfigs/a/Aspera-CLI/Aspera-CLI-3.7.2.354.010c3b8.eb @@ -0,0 +1,39 @@ +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild +# Author: Daniel D. Kinnamon +# Division of Human Genetics +# The Ohio State University Wexner Medical Center + +easyblock = 'Tarball' + +name = 'Aspera-CLI' +version = '3.7.2' +versionsuffix = '.354.010c3b8' + +homepage = 'http://asperasoft.com' +docurls = ['http://downloads.asperasoft.com/en/documentation/62'] +description = """IBM Aspera Command-Line Interface (the Aspera CLI) is +a collection of Aspera tools for performing high-speed, secure data +transfers from the command line. The Aspera CLI is for users and +organizations who want to automate their transfer workflows.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# Aspera CLI install script includes tarball inline and installs to a +# fixed location. Need to include custom extract command to pull +# tarball out of install script and pipe to tar. %s in the extraction +# command will be replaced by the source filename. +sources = [{ + 'filename': '%(namelower)s-%(version)s%(versionsuffix)s-linux-64-release.sh', + 'extract_cmd': "sed '1,/^__ARCHIVE_FOLLOWS__$/d' %s | tar -xzpo --strip-components 1 -f -", +}] +source_urls = ['http://download.asperasoft.com/download/sw/cli/%(version)s'] +checksums = ['02787ca46814fb9ae2de5c706461367e'] + +sanity_check_paths = { + 'files': ['product-info.mf'], + 'dirs': ['bin', 'certs', 'docs', 'etc', 'share/man'] +} + +sanity_check_commands = ['ascp -h', 'man ascp'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb b/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb index 98f8c2275a93be4996c2b82ff448b28398c5b38c..e4f561f62421d807cb36c5da29a55cd4ddd07b55 100644 --- a/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb +++ b/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..741c36b4309b7f803037b3be38075759382e2c3c --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCCcore-6.4.0.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' + +description = """ + Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can + adapt the packages to many kinds of UNIX-like systems without manual user + intervention. Autoconf creates a configuration script for a package from a + template file that lists the operating system features that the package can + use, in the form of M4 macro calls. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x + for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index 11720186ff5bc45f132bdf7eb14c8c9b217461d5..d45cd6848db66dc2444f88da6098dc40a30e6831 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index b9e7f683898f56df276bc8c4ce401cc54ae1bc42..31955d8aed3c0e62827f107ea3d0d23b971db9bb 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb index 5661ddb517be5d5b03b4d3038e05d4868f914da1..30d9cf6f3ac8de3695bba609adcb3039be51088e 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Alan O'Cais # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index bec66dfd3d4226a4c7c174b5bd641d38e934401a..07a0d345252dcd45f8f6b67a2617a43c69384918 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 2e5a33ea9b8ad2228644e31b0b62ceea20fc05d4..28155619ee68bd5976f1a9b80274eb839ad6bebe 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index 1ef76d9727b7604ec40e7cb01043b812f868c7f1..eb44e9f2506db7565596f5ada195f18e4cc713cc 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb index a1f5954bb7ade685fa9111fe9acfd58598880f2d..f6806921eecd5b3145a05e152d4df0864c3c2fcb 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index 3a06e84989090c88d86dc266614e28b384fff532..83744747800fbed440a6f64af0997fc3667adaa5 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb index 05705b029ec11a8040f5ca1f298513e0067e3019..9beb6f5545c040175783137417992e8339d7e3bd 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb index bf119a1eaf660a634baada27fbb32d78fc210dbf..661344dafef77aa6ad267a2397d9b593ac499726 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb index b24d010c0ab634bd0681f7dbf1895a70d7f29805..5839e4ae644f73bcd10a1f8284c9c04db1c20943 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb index a37c1d9e3b640f6bc43201517dfa0c06319276c8..e5248806a5fc4d8b1c0fa838ce64729991e1cc99 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb index e42ff285562e7c1784ff562473516c8f22c98a9f..de29b041a3bee3d832e91b504e3b0f49ecc96ac6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb index 5927ea856a1017088765c98659a0821800d75a1f..b5a5bec1bd55a171eafc5a8994b475b39ed1c672 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-4.9.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb index 0d4c530534c52d8d3bd1f8713f5b9778c770757e..1e6da1f3433f149e6dc2019c4d419ec1c6e21842 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb index 304170650f6431854ebbb0331e1940a519a5bfe4..e7a39e24d84f83c6d20332dd829e8420d5a896ee 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCCcore-6.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb index f0e456c431987fee85e7afd1b128535e805ce7ae..766349c4fd29b7848f8ca8096aa8d3576b83b17d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb index 1c089451d832b243a7aeb1334352d199c5b6385e..d97b8a59c7c9024f49627ce163801bdf12a736a6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb index 1d63ee839dff2a16ed598b167aadb9cc7255be4b..7cce783015b0a76b5c5b47115219d2335a59fb1e 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-5.1.0-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb index 7303c3d70e6fa0bbe9a953838f85fe693be895d5..0c1ee484bc82f5cb4ba422fce4a161d1edc080c6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb index 543e7a0ba7cabf0b31c17c77bb2b2591f630198a..d06c3b5cb6c032055fae4d50ed49b70ba5f825f6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb index 40213b047b74a203dfbb4fa6e04d5b8bdd7ddda8..21d3b4aab0c0dce8faab5f7c7aa246108381b81e 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016.04.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb index f73c4759eebf5ce980f4fcb6582337f65b9031e6..65fc481bf4370263456d3a2cabe3353ab950831c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb index 5c1e645dea90fd635698e8c30184a1fea25d9b64..c72d3ad8d71c14aaa1e090c241fff7fec0f380f2 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb index d521a6ebe2125dba2f34f4e77704c05963a1776b..49bcde6b70bdb12e6a04982655e2127cddf18c24 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb index cc76e86a614a0d17a50fa30e2acc6c5304ee3025..3b84dabf7b6cabaebef78639046b19b3c1875d75 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb index 25677b6f64982414f3f8b5321e0b741c4c28a7b1..a8793fcf5fa9907a407a89c6ea26065607711891 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb index 3a528809f4d33d58dc61ab7b9c3b3e193136d806..a3cddb527c058eb85b9f19f6f9e2ff78235265e9 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb index 8a059d28e6555eee00804ba73ab50eacb1d482e1..67f074a5f967600a1b4f6c6715b1c59c2bf5aa66 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb index 84750fffa92820d228e1f43b4f9dfbc5cb4fc9c4..c7071ba16e76d634af1a83da9259982114cb91fe 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016.02-GCC-4.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb index 06fbc9d74bd3c351d8e09f1b2af9f2cf0ac4709d..6ece7398d5ea1c79a5de1c408f786b92f66fcf3c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb index 2a6c1808780ceb2e145b34933aa86b398e4fef8f..d3009f88e2646c4f2b611067138a56776ae02999 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb index d787cbd50ba498a1436574c0409e5c5f9efb34c0..88bed3e4851ccc0d3bc8512e9a2df40f9270cc88 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.07.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb index c8260533e67f1dd51462723aabea5d7e165a8d51..97cf835b9b9a360ba0cc52b103a1b5c9f15a3bba 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8aa27a8cf419bf5fa5ce5a5318971340892dae12 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15.1" + +homepage = 'http://www.gnu.org/software/automake/automake.html' + +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['988e32527abe052307d21c8ca000aa238b914df363a617e38f4fb89f5abf6260'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('Autoconf', '2.69'), +] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb index 155ccd39aafb47386284df525a0c3ff13ce63b8c..49b03cdda9deb84c239a61adc72dc0f8ea96e7ca 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..34009edd830fc9df33cf1e4e782c23747fe1b5d9 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20170619-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20170619' # date of the most recent change + +homepage = 'http://autotools.io' + +description = """ + This bundle collect the standard GNU build tools: Autoconf, Automake + and libtool +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15.1'), # 20170619 + ('libtool', '2.4.6'), # 20150215 +] + +# Pure bundle -- no need to specify 'binutils' used when building GCCcore +# toolchain as build dependency + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index 97e5c8330bb93f9f763c58fa72f552580a4ca366..43ebff1094eedaa65603f0ec81ee54843bc5260c 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index efd5845e70b2ae97f41ef3d71024890ea99d77d6..7c34cc881b0282a275c1945be3849df5a0c9462b 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/ack/ack-2.14.eb b/easybuild/easyconfigs/a/ack/ack-2.14.eb index 7f10d7a34eb15116489524b161c1ad71a6218da6..2fd715d57253f18d3bc999673604c0e55d0a0767 100644 --- a/easybuild/easyconfigs/a/ack/ack-2.14.eb +++ b/easybuild/easyconfigs/a/ack/ack-2.14.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [homepage] # use 'cp' as 'unpack' command -sources = [('ack-%(version)s-single-file', "cp %s ack")] +sources = [{'filename': 'ack-%(version)s-single-file', 'extract_cmd': "cp %s ack"}] cmds_map = [('ack', "chmod a+rx ack")] diff --git a/easybuild/easyconfigs/a/ada/ada-2.0-5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/a/ada/ada-2.0-5-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b1735c68ac3a72abf41ec7c65b23da493f87eb7d --- /dev/null +++ b/easybuild/easyconfigs/a/ada/ada-2.0-5-intel-2017a-R-3.4.0.eb @@ -0,0 +1,22 @@ +easyblock = 'RPackage' + +name = 'ada' +version = '2.0-5' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://cran.r-project.org/web/packages/ada/index.html' +description = "Performs discrete, real, and gentle boost under both exponential and logistic loss on a given data set." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://cran.r-project.org/src/contrib/'] +sources = ['ada_%(version)s.tar.gz'] + +dependencies = [('R', '3.4.0', '-X11-20170314')] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb b/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb index e14e02289183e6aa2497c43b99987f83f91784e2..92edb6bb67dff3a10438ecbddae771df53896b23 100644 --- a/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb +++ b/easybuild/easyconfigs/a/annovar/annovar-2016Feb01-foss-2016a-Perl-5.22.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Modified by Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb index 251023a5bd2d1cc01a1399f9c75028685109107f..92c65de8d19b7313d9e1ddb39083a4976b74f3dc 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb index ec3422f1097e46cfb6167c5f2cdd4d5b7026007d..2eb391926ffbe5f63cf40937eaddb00400832f39 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb index 5b65e6e0a5640ebdda8afe96bc4da40144450b59..aa880de8ec7299808bae0f014ee1967e1924a663 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index 7d1302187b153ff24defb6204cf436805af2045f..b870897d26b46829202c80f5f2000fa591edffc7 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index f4d08974f2d550025d7bd5c2d3cb1513dfe36cf1..5cbd7bb040c3915ab550a5c9dbfbf3c53950b8d3 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017a.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c2f959831cf8ce02d95ec815a722040ad5e7ae33 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.5.0-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.5.0' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = "sh bootstrap && " +configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb index b307dca6af305cabe58479ec0a0208b8304c2cf7..b404abc90b2ccaa1788e1ee2ba93090dc8ea316c 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb index 885f9339b0f4bc2c89c9a54df246a9f353760206..e0f7223e0f1096a1e5ef134ad097443beb2847eb 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -26,7 +26,7 @@ buildopts = " USE_GPL=1 GSL_LIBS='-lgsl -lgslcblas'" runtest = 'test' -files_to_copy = [(["bcftools", "plot-vcfstats", "vcfutils.pl"], "bin"), +files_to_copy = [(["bcftools", "plot-vcfstats", "vcfutils.pl"], "bin"), "doc", "plugins", "test", "LICENSE", "README", "AUTHORS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb index 4ed43caefda734f67b79ac512707706e25394aeb..4efc6b0c7d90a4b8695e9690e076f0ed5a48a86e 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.1-GCC-4.8.4.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb index ffd5f8b8e630d465071f385dd7dacc1b5d84c3ad..dc4740370ebdba3f27bed75962d7403e19147a78 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez, Wiktor Jurkowski # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..8a52cdc7285629c878f4db9057328c44cc29dd58 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.26.eb @@ -0,0 +1,28 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'Tarball' + +name = 'BEDOPS' +version = '2.4.26' + +homepage = 'http://bedops.readthedocs.io/en/latest/index.html' +description = """BEDOPS is an open-source command-line toolkit that performs highly efficient + and scalable Boolean and other set operations, statistical calculations, archiving, conversion + and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome + for distributing whole-genome analyses across a computational cluster.""" + +toolchain = {'version': 'dummy', 'name': 'dummy'} + +sources = ['%(namelower)s_linux_x86_64-v%(version)s.tar.bz2'] +source_urls = ['https://github.com/%(namelower)s/%(namelower)s/releases/download/v%(version)s/'] + +checksums = ['eb39bf1dadd138dff2faa45171f8f78e'] + +sanity_check_paths = { + 'files': ['bam2bed', '%(namelower)s', 'convert2bed', 'unstarch'], + 'dirs': ['.'], +} + +modextrapaths = {'PATH': ''} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..13cda05cc9b3b2bb2f0b7617d8d0a347a9b17c92 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +# Author: Maxime Schmitt, University of Luxembourg +# Author: Adam Huffman, The Francis Crick Institute +# +# Based on the work of: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.26.0' + +homepage = "https://github.com/arq5x/bedtools2" + +description = """ + The BEDTools utilities allow one to address common genomics tasks such as + finding feature overlaps and computing coverage. The utilities are largely + based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/arq5x/bedtools2/releases/download/v%(version)s/'] +sources = ['bedtools-%(version)s.tar.gz'] +checksums = ['65f32f32cbf1b91ba42854b40c604aa6a16c7d3b3ec110d6acf438eb22df0a4a'] + +builddependencies = [ + ('binutils', '2.28'), +] + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'dirs': files_to_copy, + 'files': ['bin/%s' % x for x in + ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-intel-2017a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..48be152602f73fd3896ae68d0c70ed6ec700b269 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.26.0-intel-2017a.eb @@ -0,0 +1,33 @@ +# Author: Maxime Schmitt, University of Luxembourg +# Author: Adam Huffman, The Francis Crick Institute +# +# Based on the work of: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.26.0' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz +source_urls = ['https://github.com/arq5x/bedtools2/releases/download/v%(version)s/'] +sources = ['bedtools-%(version)s.tar.gz'] + +buildopts = 'CXX="$CXX"' + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb index 0f53e3f3c38b46bf775eb726a5e3faad7dc95d4b..ffdd4549c86ce16a983da378acd9c98c399e44d1 100644 --- a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..aecff4c2cf7c8fa6b8de271a205022cfbe26d974 --- /dev/null +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-foss-2016b.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## +# Modified for foss/2016b by Adam Huffman, Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'BFAST' +version = '0.7.0a' + +homepage = 'http://bfast.sourceforge.net/' +description = """BFAST facilitates the fast and accurate mapping of short reads to reference sequences. + Some advantages of BFAST include: + 1) Speed: enables billions of short reads to be mapped quickly. + 2) Accuracy: A priori probabilities for mapping reads with defined set of variants. + 3) An easy way to measurably tune accuracy at the expense of speed.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +verdir = ''.join(char for char in version if not char.isalpha()) +source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % verdir, 'download'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e'] + +dependencies = [('bzip2', '1.0.6')] + +patches = ['BFAST-%(version)s-inline.patch'] + +sanity_check_paths = { + 'files': ["bin/bfast"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index 372422bd73829d6fbc864d3f32659cd5c3dc463a..c18f95594e4bd9abd4da4d56e2dd6ddd38d13e06 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -24,11 +24,9 @@ description = """BFAST facilitates the fast and accurate mapping of short reads toolchain = {'name': 'goolf', 'version': '1.4.10'} -import string -swdir = version.rstrip(string.lowercase + string.uppercase) -# eg. http://sourceforge.net/projects/bfast/files/bfast/0.7.0/bfast-0.7.0a.tar.gz/download +verdir = ''.join(char for char in version if not char.isalpha()) +source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % verdir, 'download'] sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % swdir, 'download'] dependencies = [('bzip2', '1.0.6')] diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb index a5c3af2f9a7bd3ce2ede0ede475c0da9fe1246f0..f6de18a80582137e4e60643585c261042f21e374 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -24,11 +24,9 @@ description = """BFAST facilitates the fast and accurate mapping of short reads toolchain = {'name': 'goolf', 'version': '1.7.20'} -import string -swdir = version.rstrip(string.lowercase + string.uppercase) -# eg. http://sourceforge.net/projects/bfast/files/bfast/0.7.0/bfast-0.7.0a.tar.gz/download +verdir = ''.join(char for char in version if not char.isalpha()) +source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % verdir, 'download'] sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % swdir, 'download'] dependencies = [('bzip2', '1.0.6')] diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index b792e697b2ba44c1f6c9f4d0977a4538ab8262f2..14232999d6af9a8bf35ca6dba2f114bba48eec9a 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -24,11 +24,9 @@ description = """BFAST facilitates the fast and accurate mapping of short reads toolchain = {'name': 'ictce', 'version': '5.3.0'} -import string -swdir = version.rstrip(string.lowercase + string.uppercase) -# eg. http://sourceforge.net/projects/bfast/files/bfast/0.7.0/bfast-0.7.0a.tar.gz/download +verdir = ''.join(char for char in version if not char.isalpha()) +source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % verdir, 'download'] sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % swdir, 'download'] dependencies = [('bzip2', '1.0.6')] diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch new file mode 100755 index 0000000000000000000000000000000000000000..c936129c8c269b48ca3a0ee66f0b4059975a654d --- /dev/null +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-inline.patch @@ -0,0 +1,28 @@ +# mismatch in function declaration, taken from +# http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/install/bfast.htm +diff -ur bfast-0.7.0a/bfast/BLib.h bfast-0.7.0a.new/bfast/BLib.h +--- bfast-0.7.0a/bfast/BLib.h 2011-09-03 19:44:58.000000000 +0100 ++++ bfast-0.7.0a.new/bfast/BLib.h 2017-08-06 07:56:35.943546000 +0100 +@@ -16,7 +16,7 @@ + int ParseFastaHeaderLine(char*); + char ToLower(char); + void ToLowerRead(char*, int); +-inline char ToUpper(char); ++char ToUpper(char); + void ToUpperRead(char*, int); + void ReverseRead(char*, char*, int); + void ReverseReadFourBit(int8_t*, int8_t*, int); +diff -ur bfast-0.7.0a/bfast/ScoringMatrix.h bfast-0.7.0a.new/bfast/ScoringMatrix.h +--- bfast-0.7.0a/bfast/ScoringMatrix.h 2011-09-03 19:44:59.000000000 +0100 ++++ bfast-0.7.0a.new/bfast/ScoringMatrix.h 2017-08-06 07:56:49.351357000 +0100 +@@ -3,8 +3,8 @@ + + #include "BLibDefinitions.h" + +-inline int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*); +-inline int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*); ++int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*); ++int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*); + + int ScoringMatrixRead(char*, ScoringMatrix*, int); + void ScoringMatrixInitialize(ScoringMatrix*); diff --git a/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb b/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb index 16cdd37dda616f97ff392987766e98f595458ea2..c0f5cd84bc9f6bd2b0678a5457fb9687ae7d107f 100644 --- a/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb +++ b/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb index 1461dc4f22af0143df965c22b7620739e55fcfed..a65d17b81305702bff15bb31ecfe6f0edd955337 100644 --- a/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb b/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb index d31c4ec289a464ada095476ffba9f9e062edfe4e..eaea47958684e8b1f5ad783cd6c7ac0ef594dca7 100644 --- a/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BLASR/BLASR-2.2-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb index d441a3b6be2182b42bc4614298b588eb2f11202e..94be2abbf8fdc9f33dc00473fa49e38a83eaf2c1 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb index f3f69270a5d4264b99c95c725f0db32ba9dc881e..b6365defe305d7b8722c073dcbbf04ac46c1a545 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb index 0da49b06b6fc190d2330b2df278cd22bf82912e7..4d988cb0cd5a9a79ba1651c67fa6e2ad2d117aa6 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb index a4329e5cf5b979a32acbfd7a91e35959dcb6cef3..2fb0a6aeec9a93660492b7529bbe293901ffff7b 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb index a55a29ffe4443e030ad8344c403ef85c29545c59..c4c54549a49cef603ef20390cbf1eb7e700a7b93 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb index 8c97b6b7aa34984d31b4bb6a59d7eba05e5d3f4c..3c11c9414b2a68c07a5961eb3c271ef8bce17087 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 5daf7c4b33652f1117e651bd5450395954047855..60d5401e1ef8d5850f496757e9e6ed3688ede9a6 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb index 87e25ede69843b9eb3b0cdb1399a3c0ef2ad50d4..6c427e6894a18c7068caf2955e098a1d3fdc09c8 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb index a64fc6a528073ddaba00106a3b63deff86f0fbe4..a02e6a5b24c6454a53b1294274bc5fd2ddb96814 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-foss-2015b-Python-2.7.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb index e09b9fd29876e76b4e344581f4b17ff4e5b5b387..85d9b0cc0d0e60ac75195c420ba0e43f29966e86 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015a-Python-2.7.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb index a150b8d6d94ebf2d2d6e3e8bf13806e687c6e290..6dc430a12323ff79515374198d06fd9542ae7e99 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.31-intel-2015b-Python-2.7.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb index c7b71288fa90b01fdffe5c8f57bb147cfdbd9dcd..866b25a2026630646a01c781e782c85ec58d6669 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.3.0-foss-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..0942e32de1189aef60ec40134f2ddadde039a605 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,44 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = '2.6.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'cstd': 'c++14'} + +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +checksums = ['0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996'] + +patches = ['BLAST+-%(version)s_fix-make-install.patch'] + +dependencies = [ + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('PCRE', '8.39'), + ('Python', '2.7.12'), + ('Boost', '1.63.0', versionsuffix), + ('GMP', '6.1.1'), + ('libpng', '1.6.26'), + ('libjpeg-turbo', '1.5.0'), +] + +configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 --with-pcre=$EBROOTPCRE " +configopts += "--with-python=$EBROOTPYTHON --with-boost=$EBROOTBOOST --with-gmp=$EBROOTGMP " +configopts += "--with-png=$EBROOTLIBPNG --with-jpeg=$EBROOTLIBJPEGMINTURBO " + +sanity_check_paths = { + 'files': ['bin/blastn', 'bin/blastp', 'bin/blastx'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..654ef1d9199b23ee3949cff763867db89efec4fe --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,54 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = '2.6.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'cstd': 'c++14'} + +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] +patches = [ + 'BLAST+-2.2.30_ictce-fixes.patch', + 'BLAST+-%(version)s_fix-make-install.patch', +] + +dependencies = [ + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('PCRE', '8.40'), + ('Python', '2.7.13'), + ('Boost', '1.63.0', versionsuffix), + ('GMP', '6.1.2'), + ('libpng', '1.6.29'), + ('libjpeg-turbo', '1.5.1'), +] + +configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 --with-pcre=$EBROOTPCRE " +configopts += "--with-python=$EBROOTPYTHON --with-boost=$EBROOTBOOST --with-gmp=$EBROOTGMP --with-png=$EBROOTLIBPNG " +configopts += "--with-jpeg=$EBROOTLIBJPEGMINTURBO " + +sanity_check_paths = { + 'files': ['bin/blastn', 'bin/blastp', 'bin/blastx'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0_fix-make-install.patch b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0_fix-make-install.patch new file mode 100644 index 0000000000000000000000000000000000000000..61dc64608e22a6f4e9da30d8ed07e488585ba781 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.6.0_fix-make-install.patch @@ -0,0 +1,14 @@ +fix 'make install-toolkit' by copying header files in 'common' separately +patch created by Kenneth Hoste (HPC-UGent), based on patch by Kurt Lust (UAntwerpen) +--- ncbi-blast-2.6.0+-src/c++/src/build-system/Makefile.in.top.orig 2017-05-22 13:35:40.236430282 +0200 ++++ ncbi-blast-2.6.0+-src/c++/src/build-system/Makefile.in.top 2017-05-22 13:38:37.179080048 +0200 +@@ -51,7 +51,8 @@ + done + cd $(includedir0) && find * -name CVS -prune -o -print |\ + cpio -pd $(pincludedir) +- $(INSTALL) -m 644 $(incdir)/* $(pincludedir) ++ $(INSTALL) -m 644 $(incdir)/*.h $(pincludedir) ++ $(INSTALL) -m 644 $(incdir)/common/*.h $(pincludedir)/common + ## set up appropriate build and status directories somewhere under $(libdir)? + + install-gbench: diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb index 5befdd3e111e267098d9357072100d900de5a494..98748d456d2e311cd86bd4e47ce6d50603de24be 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb index eb88b061dde0914f10ed131170fa05bf723873fa..083100e3354cdff189ff015f160b6d31072c950d 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb index 0222da154644c5563efe5738eb78b4f5defbd065..df2e50f7ef1d5c6d94733f51e8ce018dbbdec091 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb index 955ee61e307871f150786bba41b4efd4539755bc..c62cc8c37cd63b01db561de828daafccbdc8062f 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb index 48a47daaa1124160db1915c3c331695f3efbecde..73121f1b93f0bea888f1e0e01f4e045117b91bd6 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou @@ -11,7 +11,8 @@ name = 'BLAT' version = '3.5' homepage = 'http://genome.ucsc.edu/FAQ/FAQblat.html' -description = "BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more." +description = """BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases + or more.""" toolchain = {'name': 'intel', 'version': '2016b'} diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb index 7e57ded0421cbd6eb4919f5c12e00295b9393cff..6ccbd52bf521a70bcf5a737419ac051224b19572 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/b/BUSCO/BUSCO-2.0.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/BUSCO/BUSCO-2.0.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..3c812eb0fb2bae7ff296cfb79fcc0c6bd3988992 --- /dev/null +++ b/easybuild/easyconfigs/b/BUSCO/BUSCO-2.0.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,31 @@ +easyblock = 'Tarball' + +name = 'BUSCO' +version = '2.0.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://busco.ezlab.org/' +description = "BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# download via https://gitlab.com/ezlab/busco/repository/archive.tar.gz?ref=2.0.1 +# rename to busco-2.0.1.tar.gz +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '2.7.13'), + ('BLAST+', '2.6.0', versionsuffix), + ('HMMER', '3.1b2'), + ('AUGUSTUS', '3.2.3', versionsuffix), + ('EMBOSS', '6.6.0'), +] + +sanity_check_paths = { + 'files': ['BUSCO.py', 'BUSCO_plot.py'], + 'dirs': ['sample_data'], +} + +modextrapaths = {'PATH': '.'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb index 88e63bb1aeff6c1ee609045b4a1e96e7153c7146..8ffe52e8b40e829db4943bc5c0494e50b4c59d71 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb index bd449ad58fcae97f93ade118956334d743a38330..347e942fa75c0828c899ddfb6450bec437d7de9c 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb index 2018ca59b4f298deced95a8d4977d0102fc039ef..bc277b674633c655220b49ec3f20819b94e11fe3 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb index 419aba7bab7fe6cfef40db2c9093e3efc6243b61..5701149cf0415e38e6e09643eee25a09c921ab76 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb index 2dbdeeb980092decdf7fa4ca064efc1f23dad61a..8727436b5f506cf09c4624fb0b700865e2f390a2 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb index f4774cbbbe1440cbc59188a6b06783e2e7ae4e0c..17ac0a8257a7758c54bb5aed8dc242599880aee8 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..726ee696646a70be39c4cc1122debd5607e20c9e --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-5.4.0.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'BWA' +version = '0.7.15' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/lh3/%(name)s/archive/'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..01ef5ad9dcdbd233424c569c07572a724e04dc39 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.15' + +homepage = 'http://bio-bwa.sourceforge.net/' + +description = """ + Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively + short nucleotide sequences against a long reference sequence such as the human + genome. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/lh3/%(name)s/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['126d247e6ab8a8c215bec248f9174a15c6d960c193330e659a2b686f2964cfbd'] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb index 88e524cd9dfc39177028a262b3c02da8cac42f2a..44614302d1e1c7a38170722b7aec4bca25dd34cf 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb index 62b042ace97e45a63ef7992c67fdeb42f806e444..e96ea32189d4b6bc723c6e348f9e295c01619599 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..587cba33071d562b302158c5fa5c8ce2aa4e2336 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.15-intel-2017a.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.15' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/lh3/%(name)s/archive/'] +sources = ['v%(version)s.tar.gz'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..e2a6be01fd46248ea167bbe8a22a4b3ec19658d4 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-foss-2016b.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.16a' +subver = version[:-1] + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/lh3/bwa/releases/download/v%s/' % subver] +sources = ['%(namelower)s-%(version)s.tar.bz2'] +checksums = ['8fecdb5f88871351bbe050c18d6078121456c36ad75c5c78f33a926560ffc170'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb new file mode 100755 index 0000000000000000000000000000000000000000..742b3bab041b1da23726fc5eb66b22b3c2130c18 --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.16a-intel-2017a.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.15 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.16a' +subver = version[:-1] + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/lh3/bwa/releases/download/v%s/' % subver] +sources = ['%(namelower)s-%(version)s.tar.bz2'] +checksums = ['8fecdb5f88871351bbe050c18d6078121456c36ad75c5c78f33a926560ffc170'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb index 6c6c1aff71d851adf0eea52b6a77d4518144fd43..440154e3c45fe5c3326d26c36da060771b6de832 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb index 66de8f1a8625d684ca5f4552ac7e5abd38625359..d9ece5f8bc72b799039d32af8474a6f8467c12dc 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb index 860efca9e4c429c6852ee3f25f9a68e063856b3c..de76a6f00391df6f02d99a3f15a2c5e9156406e4 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb b/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb index c0802f9dddb138b7168814c3ab3a0c8c7b06bd89..1584cea2970dc23b046ff27b4a4bbfadae8dce9b 100644 --- a/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb +++ b/easybuild/easyconfigs/b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb index 3c60714d7f2053dd198cb855f2c6930910ac391b..b2223051af79b7d9c9992702a284c682a26644a3 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb index 7fbeba0c2d45e4d447798924ebfc58695007e221..8ff8d44b31e4858661c12fb25730f7f45f1f98d7 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.2.3-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb index 9e9c2961a5d7adfaf53fe8f3df774c7fdda630a9..4cba6a6b0ed2f20b239a5f1031edf9fdf06eee8f 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb index b1a2aa0cf6716a1ac261201c8f1ce087928acd37..9f0e3941f00df6d584a3712026684c8141e35203 100644 --- a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb index bbca7a748e4392eb67844612d09fe67a1f29a1e7..f601bc63da51126e6eae3991b136c78176216263 100644 --- a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb +++ b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb index ceadf51bc5831ef2d2e440501616b1bebe05fd78..65f9d502aa4a1f385fb6fd2b8d98f2a2e3a6f186 100644 --- a/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb +++ b/easybuild/easyconfigs/b/BamUtil/BamUtil-1.0.13-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb index 7cf887ea82d676aa750b8a5935761cf90ad52d34..528d89262c15b0b7f0b732ffe074b1d0f328a18d 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb index b45858d56f58286d74e1a8f3ead4a34362decae7..84323048382d020c656761780b2453573d14c934 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb index 3d11d3fad48d25103469214b3876c5759bbe9e7e..c6c7915da3d90fdecf482d06438d7c2b45b39c68 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild ## # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb index 65f14b74d86062815839d359385220793ead7603..25bcd12143501255b3daa2777e611947b32f0741 100644 --- a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb index 25707a1810d10bf021087a30bf63a21a2e233e2a..e2b2f40c7ee240b53424e974280faddce978d39b 100644 --- a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb index a0b996743d34d071eb98bba4c775b8be0bb0bbab..336a764164cc4f37bc3c66d7e19859fed550d67a 100644 --- a/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb index ebd814c54e20de1a61f89ac4c020a312b8a76114..f1ea19dfa0d3986740afff9b96b4890d1d863681 100644 --- a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb +++ b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb index 2902acfde69bc63eae271ae901248356711fa982..3a8d229257b58b7c54eff7d611e0529e542fc615 100644 --- a/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb index 8d561cd81b9141b1690e67afb350c62768770f20..d034b7c154baf76ea0ea9961e1126dd526834d5d 100644 --- a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb index 29cb55f2519ef5648562bc4475989931f17dc654..a7199d6201cffecf0eedbe5391f8869604a28a6d 100644 --- a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb b/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb index 283940594d7ebb1d8ec9c80f888e229344ca1242..c94bcc0b40db60ded94546bd8b7ff973cca3ed9f 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-1.8.4.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb index f28387fbee35d9206b62e42bdee6455bf7d64b3d..512e98ad2ae8ea370d29dd9e3d958aa7f70c3596 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb b/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb index 484da63909cf76bf4f8ad53154161fe0b0f837e8..1e44caf2ee6cb8bb45d7f85fad8be5a7eb7ce849 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-2.4.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bio-SamTools/Bio-SamTools-1.43-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/b/Bio-SamTools/Bio-SamTools-1.43-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..870337a366cc9ac8185a614aed6d30f37f9801c4 --- /dev/null +++ b/easybuild/easyconfigs/b/Bio-SamTools/Bio-SamTools-1.43-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,31 @@ +easyblock = 'PerlModule' + +name = 'Bio-SamTools' +version = '1.43' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/~lds/Bio-SamTools/' +description = """This is a Perl interface to the SAMtools sequence alignment interface.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://search.cpan.org/CPAN/authors/id/L/LD/LDS'] +sources = [SOURCE_TAR_GZ] + +patches = ['%(name)s-%(version)s.patch'] + +dependencies = [ + ('Perl', '5.24.1'), + ('BioPerl', '1.7.1', versionsuffix), + ('SAMtools', '0.1.17'), +] + +options = {'modulename': 'Bio::DB::Sam'} + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bam2bedgraph', 'bamToGBrowse.pl', 'chrom_sizes.pl', 'genomeCoverageBed.pl']], + 'dirs': ['lib/perl5/site_perl/%%(perlver)s/x86_64-linux-thread-multi/%s' % x for x in ['auto', 'Bio']], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bio-SamTools/Bio-SamTools-1.43.patch b/easybuild/easyconfigs/b/Bio-SamTools/Bio-SamTools-1.43.patch new file mode 100644 index 0000000000000000000000000000000000000000..22981ce8a4d541712542a49ec59ae5d34eedda31 --- /dev/null +++ b/easybuild/easyconfigs/b/Bio-SamTools/Bio-SamTools-1.43.patch @@ -0,0 +1,56 @@ +# Take EB provided SAMtools, and use the correct include path. Pick EB provided CC and CFLAGS as well. +# May 29th 2017 by B. Hajgato (Free University Brussles - VUB) +--- Bio-SamTools-1.43/Build.PL.orig 2016-02-12 20:31:32.000000000 +0100 ++++ Bio-SamTools-1.43/Build.PL 2017-05-26 13:22:23.318323680 +0200 +@@ -75,7 +75,7 @@ + $sam_include = $samtools + if -e "$samtools/$HeaderFile"; + $sam_include = "$samtools/include" +- if -e "$samtools/include/$HeaderFile"; ++ if -e "$samtools/include/bam/$HeaderFile"; + $sam_lib = $samtools + if -e "$samtools/$LibFile"; + $sam_lib = "$samtools/lib" +@@ -164,7 +164,7 @@ + } + + sub _samtools { +- $ENV{SAMTOOLS} || ++ $ENV{EBROOTSAMTOOLS} || + ( can_load(modules => {'Alien::SamTools' => undef, 'File::ShareDir' => undef}) && + File::ShareDir::dist_dir('Alien-SamTools')); + } +--- Bio-SamTools-1.43/c_bin/makefile.orig 2016-02-12 20:31:32.000000000 +0100 ++++ Bio-SamTools-1.43/c_bin/makefile 2017-05-26 13:44:43.770545813 +0200 +@@ -1,5 +1,5 @@ +-CC= gcc +-CFLAGS= -g -Wall -O2 -fPIC ++CC?= gcc ++CFLAGS?= -g -Wall -O2 -fPIC + DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 + INCLUDES= + LIBPATH= +--- Bio-SamTools-1.43/c_bin/bam2bedgraph.c.orig 2016-02-12 20:31:32.000000000 +0100 ++++ Bio-SamTools-1.43/c_bin/bam2bedgraph.c 2017-05-26 13:29:28.041584111 +0200 +@@ -1,5 +1,5 @@ + #include +-#include "sam.h" ++#include "bam/sam.h" + + typedef struct { + uint32_t ltid; +--- Bio-SamTools-1.43/lib/Bio/DB/Sam.xs.orig 2016-02-12 20:31:32.000000000 +0100 ++++ Bio-SamTools-1.43/lib/Bio/DB/Sam.xs 2017-05-29 11:56:51.145855185 +0200 +@@ -25,9 +25,9 @@ + + #include + #include +-#include "bam.h" +-#include "khash.h" +-#include "faidx.h" ++#include "bam/bam.h" ++#include "bam/khash.h" ++#include "bam/faidx.h" + + /* stolen from bam_aux.c */ + #define MAX_REGION 1<<29 diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb index 26ff0e4f6ad3a87b0e5b46cd7267b7b431cade23..5462b9b74f12b3cffa03c84f6b2d73f50d26625e 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb index 462ab92f171c42d90505b512de5e76f6bdfa94c1..bb428926a02471228e1dbde7cac77bec14033eea 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb index c5aa94f58c2551f02c755e76edfea8a9db16af49..cc4c98123e2defd8aff4193878dc67ef66ac35e1 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb index f5a410bf2342e019150a266f247baa53b7842186..74455b1860aa425d3b4ee2daed88ae3495bc58a3 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc0119ae93e7c7936bdce29302f70d5a0badd6f3 --- /dev/null +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , Thekla Loizou , +# George Tsouloupas +# License:: MIT/GPL +# +## +easyblock = 'PythonPackage' + +name = 'Biopython' +version = '1.68' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.biopython.org' +description = """Biopython is a set of freely available tools for biological computation written +in Python by an international team of developers. It is a distributed collaborative effort to +develop Python libraries and applications which address the needs of current and future work in +bioinformatics. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://biopython.org/DIST'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '3.5.2') +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] +} + +options = {'modulename': 'Bio'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb index 762f84f5589d192de63fd4364811e2b71c2a5dfe..7f7a69446216d27756bd7293ca4aeaca2b16da72 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb index 36d03b946c336e6aa35fa89deff47ddac95625e2..cb2c07fb7f540c776d7aa7b3b102f663920e21a4 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..e9f9d1c3f3a68c0b935199270f016817e0131845 --- /dev/null +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.70-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , Thekla Loizou , +# George Tsouloupas +# License:: MIT/GPL +# +## +easyblock = 'PythonPackage' + +name = 'Biopython' +version = '1.70' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.biopython.org' +description = """Biopython is a set of freely available tools for biological computation written +in Python by an international team of developers. It is a distributed collaborative effort to +develop Python libraries and applications which address the needs of current and future work in +bioinformatics. """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://biopython.org/DIST'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b'] + +dependencies = [ + ('Python', '3.6.1') +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] +} + +options = {'modulename': 'Bio'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb index ee96cc0a43c6030bc536708e453d08065a74d3aa..d6a0d16ca9cd369bf43fb676c41f8c8b592ec9c2 100644 --- a/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..00833a66e31252763010c861596f7c677c36ae2c --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' + +description = """ + Bison is a general-purpose parser generator that converts an annotated + context-free grammar into a deterministic LR or generalized LR (GLR) parser + employing LALR(1) parser tables. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] + +builddependencies = [ + ('M4', '1.4.18'), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.28', '', True), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b2a1818c26458b44b99f7ca4f28e42699bccfa0 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCCcore-7.2.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] + +builddependencies = [ + ('M4', '1.4.18'), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.29', '', True), +] + + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-gimkl-2017a.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d8b1c076f492d13697be672ec2c32bf58c996eac --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-gimkl-2017a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb index 7828372bd5e8e43a10b89961feea512d48c486df..fc43bdc45f35d9d84a9786d270ec219c283c3729 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4.eb @@ -4,18 +4,25 @@ name = 'Bison' version = '3.0.4' homepage = 'http://www.gnu.org/software/bison' -description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar -into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +description = """ + Bison is a general-purpose parser generator that converts an annotated + context-free grammar into a deterministic LR or generalized LR (GLR) parser + employing LALR(1) parser tables. +""" toolchain = {'name': 'dummy', 'version': ''} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b67fd2daae7a64b5ba862c66c07c1addb9e6b1b05c5f2049392cfd8a2172952e'] -builddependencies = [('M4', '1.4.17')] +builddependencies = [ + ('M4', '1.4.17'), +] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'files': ['bin/%s' % x for x in ['bison', 'yacc']] + ['lib/liby.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb index 5a270ebc00c4566c5666eb2464dc127706ae9165..49a48ad18fdbe357de8eae6ab18c2b10b0888136 100644 --- a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..7789563ca5e9eafba76ad008c4899b6762c66ad2 --- /dev/null +++ b/easybuild/easyconfigs/b/Blitz++/Blitz++-0.10-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'Blitz++' +version = '0.10' + +homepage = 'http://blitz.sourceforge.net/' + +description = """ + Blitz++ is a (LGPLv3+) licensed meta-template library for array manipulation + in C++ with a speed comparable to Fortran implementations, while preserving an + object-oriented interface +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [('https://sourceforge.net/projects/blitz/files/blitz/%(name)s %(version)s', 'download')] +sources = ['blitz-%(version)s.tar.gz'] +checksums = ['804ef0e6911d43642a2ea1894e47c6007e4c185c866a7d68bad1e4c8ac4e6f94'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = '--enable-shared' + +sanity_check_paths = { + 'files': ['lib/libblitz.a'], + 'dirs': ['include/blitz/array', 'include/blitz/gnu', 'include/blitz/meta', + 'include/random', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ca8add747dd9111619e5655e18b22132710feebf --- /dev/null +++ b/easybuild/easyconfigs/b/Blosc/Blosc-1.12.1-GCCcore-6.4.0.eb @@ -0,0 +1,27 @@ +easyblock = 'CMakeMake' + +name = 'Blosc' +version = '1.12.1' + +homepage = 'http://www.blosc.org/' + +description = "Blosc, an extremely fast, multi-threaded, meta-compressor library" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/Blosc/c-blosc/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['e04535e816bb942bedc9a0ba209944d1eb34e26e2d9cca37f114e8ee292cb3c8'] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +sanity_check_paths = { + 'files': ['include/blosc-export.h', 'include/blosc.h', 'lib/libblosc.a', + 'lib/libblosc.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index fd432782eb508d5decd0f0d83c6fdc9130aaef0a..63fcc6604650e993a856926e9aeeabd701196a3b 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index c663871a9cbcb73d716966885b489c5b46475535..cce4aa524ab3fd65af016315119127ccd154647f 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb index f63a76fa69259c7e8077d4eebb005e0a4c496fa1..b9cf7274864e0247c5605cc52c80c93db9665a36 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.97-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..f2dba0b8a438a91976c13a1ddf00e5583bb901de --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'Boost' +version = '1.54.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = "Boost provides free peer-reviewed portable C++ source libraries." + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True, 'pic': True, 'cstd': 'c++0x'} + +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +source_urls = ['https://sourceforge.net/projects/%(namelower)s/files/%(namelower)s/%(version)s'] + +patches = [ + '%(name)s-%(version)s_fix-allocator.patch', + '%(name)s-%(version)s_fix-int64_t-support.patch', + '%(name)s-%(version)s_fix-make_tuple-namespace.patch', +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', '2.7.12'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch new file mode 100644 index 0000000000000000000000000000000000000000..d8417cd358ab7cd10571fa35a99ee619f28f96d9 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-allocator.patch @@ -0,0 +1,13 @@ +* fix build error: No best alternative for libs/coroutine/build/allocator_sources +author: Paul Jähne +--- libs/coroutine/build/Jamfile.v2 ++++ libs/coroutine/build/Jamfile.v2 +@@ -40,7 +40,7 @@ + : detail/standard_stack_allocator_posix.cpp + ; + +-explicit yield_sources ; ++explicit allocator_sources ; + + lib boost_coroutine + : allocator_sources diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch new file mode 100644 index 0000000000000000000000000000000000000000..3f717263bf044045022af0c6de0dc701880864de --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-int64_t-support.patch @@ -0,0 +1,16 @@ +* fix build error: int64_t support +author: Paul Jähne +--- boost/cstdint.hpp ++++ boost/cstdint.hpp +@@ -41,7 +41,10 @@ + // so we disable use of stdint.h when GLIBC does not define __GLIBC_HAVE_LONG_LONG. + // See https://svn.boost.org/trac/boost/ticket/3548 and http://sources.redhat.com/bugzilla/show_bug.cgi?id=10990 + // +-#if defined(BOOST_HAS_STDINT_H) && (!defined(__GLIBC__) || defined(__GLIBC_HAVE_LONG_LONG)) ++#if defined(BOOST_HAS_STDINT_H) \ ++ && (!defined(__GLIBC__) \ ++ || defined(__GLIBC_HAVE_LONG_LONG) \ ++ || (defined(__GLIBC__) && ((__GLIBC__ > 2) || ((__GLIBC__ == 2) && (__GLIBC_MINOR__ >= 17))))) + + // The following #include is an implementation artifact; not part of interface. + # ifdef __hpux diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch new file mode 100644 index 0000000000000000000000000000000000000000..42226a818373aa848c9dc5c652f2ee1dc47838b7 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.54.0_fix-make_tuple-namespace.patch @@ -0,0 +1,22 @@ +* fix build error: could not convert 'std::make_tuple(_Elements&& ...) +author: Paul Jähne +--- libs/mpi/src/python/py_nonblocking.cpp ++++ libs/mpi/src/python/py_nonblocking.cpp +@@ -118,7 +118,7 @@ + pair result = + wait_any(requests.begin(), requests.end()); + +- return make_tuple( ++ return boost::python::make_tuple( + result.second->get_value_or_none(), + result.first, + distance(requests.begin(), result.second)); +@@ -134,7 +134,7 @@ + test_any(requests.begin(), requests.end()); + + if (result) +- return make_tuple( ++ return boost::python::make_tuple( + result->second->get_value_or_none(), + result->first, + distance(requests.begin(), result->second)); diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..13f1c926c3707ca6476575185f9fe3803444184b --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2017a.eb @@ -0,0 +1,23 @@ +name = 'Boost' +version = '1.58.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a-Python-2.7.13.eb index 49051608e18eb81b1a51686b0e94464f26b78da8..5fac3580dbcc10da4d2d016dbbecc742cd3f8d3a 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a-Python-2.7.13.eb @@ -21,4 +21,3 @@ dependencies = [ boost_mpi = True moduleclass = 'devel' - diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a.eb index ea4624e01dda77a88c9595fe698acd66bc03add0..09208d29d989ca1a66554d547dffb17a733ff359 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.63.0-foss-2017a.eb @@ -21,4 +21,3 @@ configopts = '--without-libraries=python' boost_mpi = True moduleclass = 'devel' - diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f12c5655a07f93ab4cb99caf246b7703d98d9bf2 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-5.4.0.eb @@ -0,0 +1,18 @@ +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +name = 'Bowtie' +version = '1.1.2' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. +It aligns short DNA sequences (reads) to the human genome. +""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffaca077d2d65e40a2d930dd9379af65a0fc8042 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-GCCcore-6.3.0.eb @@ -0,0 +1,19 @@ +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +name = 'Bowtie' +version = '1.1.2' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. +It aligns short DNA sequences (reads) to the human genome. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] +checksums = ['b1e9ccc825207efd1893d9e33244c681bcb89b9b2b811eb95a9f5a92eab637ae'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e5cbc7d4070befead51e34054846133aa4b59f0 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.2.1.1-foss-2016b.eb @@ -0,0 +1,20 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'Bowtie' +version = '1.2.1.1' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. + It aligns short DNA sequences (reads) to the human genome.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +checksums = ['71d708c957380e115ba420a96ac5f8456c6a61760a5f4dbe06305df6a42131d8'] + +dependencies = [('tbb', '2017_U5')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index f334c5a116455208ab97f29ca185909e7ffa72bf..696fee331f68391cc069a5ef671561fccc74082f 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index fa8a4e145b6a09e6eebaeb26d0b88e42e1ff84ba..c6f9f99e381c1d5dd42564103486d7285c9b4a96 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb index a81247d55944260a4f373c31ad2e3b0ea3a99ce9..5f0e98a15a4749409c13fadc072df0d44bf20215 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb index 00cfc5cb069655742bcaae77c85a770c0a5831c7..45020b3fa7e8d3590db2e87d9eee6de6f8af13f1 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb index 8f006d90549004c9cbc0c75a50d6a98abd8a70a5..151407252cbb8a957f56457ec7513e6c04603c48 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb index de611ce79f9577620799dfc76ac41d1a3639d455..ed9036db9f5126a32ccf01dc2ce38e0a2148494b 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb index 9dc4955f2b7587597f1f945d300b3f2de06f458d..f453956b9ee8d736282ce89af67ac450362b7310 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb index 535fcdd94e58d29be61cdb9cf729baeb6d2cbb6f..d67420cc104f451d9b8200381bf00a87ed3d6118 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb index 8e2370c31641b3b52c391ddf293ba47c8b375ad1..726d063f446c36fc257327cb0764ff6f970053eb 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb index b011315af876b75c340839b9892fc041d5ce0027..91e64b60c7b988cc4afb434c0bda4b658d813f48 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb index 4dca70247f1ee2423a533c365e7f5a8aca77de50..7849523909ac160b1767d8c5507b026e8413de22 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb index 6cd8cef8b8fc01a23a5041400aab409eed04947d..379fb19b0a85d8d0b02a8bec8040ac314d462e7e 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb index 5c6e44e1e9be74931198d04e2a96ea9da0a72e95..37dd9eeb5e990bfbf0b28c40160de8ccf8e4f5cd 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb index 7cd080fdb1497013490b8cc7c6dfaf972dfcc42b..e3549fe5dc4e189e57105f1549b12ee49c4d2b44 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb index e6c1bebf90f382bfebddd33f8a96b008714e82d8..c461c553d1093e6ce92deec0bbe3589e968d757d 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb index 4982ab4d19ef1a0c29529078111065e3b3c5a609..35ea0c2d176171028fc705552a2b8c85e2d165ed 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb index cf2e82b71cb50db2f25651ea6a59a4af0ac119dd..2e3a3b0513e5e75c463a803b63fd2d91c7da647c 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb index 637e625710364c397080be199bf57abe126f5eb1..728208e851ccd084f5ab21f2c3c74b72e333a622 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb index 826bc88a15243d9eaa185993e63ae7d86695851a..cadc838afb7bd98fc9e75ece83196a5cb98d4ed0 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.9-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -25,6 +25,6 @@ sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] # to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} +# modextrapaths = {'PATH': 'scripts'} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5fcd3f7ba00f346bfdda58fd776daf413927b32c --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2016b.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute +# Modified by: Kurt Lust, UAntwerp +# Modified by: Paul Jähne + +name = 'Bowtie2' +version = '2.3.2' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] + +dependencies = [('tbb', '2017_U5')] + +# to add script folder to path just uncomment this line +# modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0222eced42f418782d13932845c804dbd2a8fc88 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-foss-2017a.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute +# Modified by: Kurt Lust, UAntwerp + +name = 'Bowtie2' +version = '2.3.2' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'cstd': 'gnu++98'} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] +checksums = ['ef0fe6d712eb3f9fbd784a5772547a28859a71eb6c455ef670b0f11a56cc73f7'] + +dependencies = [('tbb', '2017_U6')] + +# to add script folder to path just uncomment this line +# modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..875117f1652f175c793cc239242559459cc8942b --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.3.2-intel-2017a.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute +# Modified by: Kurt Lust, UAntwerp + +name = 'Bowtie2' +version = '2.3.2' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'cstd': 'c++11'} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +dependencies = [('tbb', '2017_U6')] + +# disable warning on incompatible exception specification that is treated as an error +buildopts = "EXTRA_FLAGS='-wd809'" + +# to add script folder to path just uncomment this line +# modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bpipe/Bpipe-0.9.9.2-intel-2017a.eb b/easybuild/easyconfigs/b/Bpipe/Bpipe-0.9.9.2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b0ee97e8f9e2278cd9e29dee0d7d58d7a056edfb --- /dev/null +++ b/easybuild/easyconfigs/b/Bpipe/Bpipe-0.9.9.2-intel-2017a.eb @@ -0,0 +1,21 @@ +easyblock = 'Tarball' + +name = 'Bpipe' +version = '0.9.9.2' + +homepage = 'http://docs.bpipe.org/' +description = "Bpipe - a tool for running and managing bioinformatics pipelines" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://download.bpipe.org/versions/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Java', '1.8.0_131', '', True)] + +sanity_check_paths = { + 'files': ['bin/bpipe', 'lib/bpipe.jar'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bullet/Bullet-2.83.7-foss-2016a.eb b/easybuild/easyconfigs/b/Bullet/Bullet-2.83.7-foss-2016a.eb index bcb89c1b4e3deb4d8be3cf57e917b2c729315690..e9318b4588a581715fb991d32eb8916efd4568f8 100644 --- a/easybuild/easyconfigs/b/Bullet/Bullet-2.83.7-foss-2016a.eb +++ b/easybuild/easyconfigs/b/Bullet/Bullet-2.83.7-foss-2016a.eb @@ -19,7 +19,7 @@ builddependencies = [('CMake', '3.5.2')] configopts = "-DBUILD_SHARED_LIBS=ON" sanity_check_paths = { - 'files': ['include/bullet/btBullet%sCommon.h' % x for x in ['Collision', 'Dynamics']] + + 'files': ['include/bullet/btBullet%sCommon.h' % x for x in ['Collision', 'Dynamics']] + ['lib/libBullet%s.%s' % (x, SHLIB_EXT) for x in ['Collision', 'Dynamics']], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb b/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb index 9f5b2f295cd32806339f9446da158198d4dbf08a..2bde81198ccc4a041fac410f4264416a690cb742 100644 --- a/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb +++ b/easybuild/easyconfigs/b/bam-readcount/bam-readcount-0.7.4-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'CMakeMake' diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb index c86e6e0a3b3c96b413e359706c0ff7cd6170cae9..17f4948e3d0fabbc746a5592185b431f6592c7a3 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb index 4398ec51503668b1e52d6907e1d74760b7d797b5..6826ce4726c7635d897da97cbcf9155094f4aabe 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/b/basemap/basemap-1.0.7-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/b/basemap/basemap-1.0.7-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..69a5b6b4c45837e5ece9c299f969c225eb185bd1 --- /dev/null +++ b/easybuild/easyconfigs/b/basemap/basemap-1.0.7-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'basemap' +version = '1.0.7' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org/basemap/' +description = """The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://downloads.sourceforge.net/project/matplotlib/matplotlib-toolkits/basemap-%(version)s'] + +prebuildopts = 'GEOS_DIR=$EBROOTGEOS' +preinstallopts = prebuildopts + +dependencies = [ + ('Python', '2.7.13'), + ('matplotlib', '2.0.2', versionsuffix + '-libpng-1.6.29'), + ('GEOS', '3.6.1', versionsuffix), + ('PIL', '1.1.7', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/python%%(pyshortver)s/site-packages/_geoslib.%s' % SHLIB_EXT], + 'dirs': ['lib/python%(pyshortver)s/site-packages/mpl_toolkits/basemap'] +} + +options = {'modulename': 'mpl_toolkits.basemap'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index b334202a6e96232b6dfe91338ae915a5ba0b6f89..b5a8101154627784d01ec7ccbb843890b6bd0a60 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb index 3c955962eb55405780233452ab3b8d87e4cafd45..4eba5f7b792c0b76cd02a40356e00f7602904298 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.1-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index 738e6ce0b14847783a8938d87b43e02a20a176a5..4779d17ea88284372102f82504b84952296c0066 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index 29c92454a67925ec51a70d260a2a45927080c2fd..fe465ff81cdfd689d86693a4dec62811cb0fc56d 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb index 21a811ccbf3b82bc5d5d44f00bf11e082897a54c..45d006c6b11c4a914d02ea0923a2d5f162a11f69 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb index 3755390098030c7018e2ecf4abaecb193d0d859c..a2bbef0236cec11994256c769caf32fc2ae7653c 100644 --- a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb24e2f5ed12bf80a5f016a0203f4ec3ddaa051e --- /dev/null +++ b/easybuild/easyconfigs/b/bcl2fastq2/bcl2fastq2-2.19.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'bcl2fastq2' +version = '2.19.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html' +description = """bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by + Illumina sequencing systems to standard FASTQ file formats for downstream analysis.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/'] +sources = [{ + 'filename': '%(name)s-v%(version)s-tar.zip', + 'extract_cmd': 'unzip -p %s | tar -xzvf -', # source file is a .zip that contains a .tar.gz +}] + +checksums = ['cf13580f2c1ebcc3642b4d98a02ad01e41a44e644db7d31730f9767b25521806'] + +start_dir = 'src' +configopts = '--force-builddir' + +dependencies = [ + ('Boost', '1.54.0', versionsuffix), + ('Python', '2.7.12'), +] + +sanity_check_paths = { + 'files': ['bin/bcl2fastq'], + 'dirs': ['lib'] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index de87300f7c45a4deeb13fbc0d2a2279c625d41a3..1c728da8c0d8732b3ed71d907665d60de29aa264 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb index d989a00acf10d062f6ab7be1a7064278b136888e..b9f1d711c15d1aae4ea4c357ffdf4796fb3d2246 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..4281a9f3238b5e628e3ca24b5345d41c31af33b3 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +name = 'binutils' +version = '2.28' + +homepage = 'http://directory.fsf.org/project/binutils/' + +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), + # use same binutils version that was used when building GCC toolchain, + # to 'bootstrap' this binutils + ('binutils', version, '', True) +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb index 7681d5cc1f560b3934cf315ce503aa04b9461ce3..a50c4f25ca1b2f1978bb148c25c4060a1253243d 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.28.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.28.eb @@ -2,12 +2,14 @@ name = 'binutils' version = '2.28' homepage = 'http://directory.fsf.org/project/binutils/' + description = "binutils: GNU binary utilities" toolchain = {'name': 'dummy', 'version': ''} -sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'] builddependencies = [ ('flex', '2.6.3'), diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb b/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..2e11b1cadfde3d58dbc41a662a22abd18f808546 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.29-GCCcore-7.2.0.eb @@ -0,0 +1,22 @@ +name = 'binutils' +version = '2.29' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] +checksums = ['172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4'] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), + # use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils + ('binutils', version, '', True) +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.29.eb b/easybuild/easyconfigs/b/binutils/binutils-2.29.eb new file mode 100644 index 0000000000000000000000000000000000000000..6efb559b8a64b25c9702d063d3b53f587781b041 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.29.eb @@ -0,0 +1,21 @@ +name = 'binutils' +version = '2.29' + +homepage = 'http://directory.fsf.org/project/binutils/' + +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4'] + +builddependencies = [ + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + # zlib required, but being linked in statically, so not a runtime dep + ('zlib', '1.2.11'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 428ecbe9cfe462dae187f1bfb328fa3f9d42cd0b..847f03574176d6fd45b2dff32ea242d065e0709f 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index 6fcc534d72a27e821e128b09dcf48fa52d74bb4d..c2a6853c1572780670f567e0da7f696d25e43bb8 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index 34a00add446855a520a05aa3cbc7156538aa7e60..3354b93931cd4a79e0ce78960b0dc3784835b7b9 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index 1091497ff7ea58e55f91a3473bc0c0a03968c8c7..02f177a07b6d89b916ea307fc55acfeaad6fd3ef 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/b/buildenv/buildenv-default-intel-2017a.eb b/easybuild/easyconfigs/b/buildenv/buildenv-default-intel-2017a.eb new file mode 100755 index 0000000000000000000000000000000000000000..ba8c60067e8828cf37b0963a86b25f1f13e49da7 --- /dev/null +++ b/easybuild/easyconfigs/b/buildenv/buildenv-default-intel-2017a.eb @@ -0,0 +1,13 @@ +easyblock = 'BuildEnv' + +name = 'buildenv' +version = 'default' + +homepage = 'None' +description = """This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that + you can use to easily transition between toolchains when building your software. To query the variables being set + please use: module show """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb b/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb index 25c40493113031e575197107ef7287a554bf9f88..d9d9591bf7be25aad464e4e43b0f5d63d252932f 100644 --- a/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb +++ b/easybuild/easyconfigs/b/bwakit/bwakit-0.7.15_x64-linux.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..64ac3adea007236a68bd4eb6877d4911ef041909 --- /dev/null +++ b/easybuild/easyconfigs/b/byacc/byacc-20170709-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'byacc' +version = '20170709' + +homepage = 'http://invisible-island.net/byacc/byacc.html' + +description = """ + Berkeley Yacc (byacc) is generally conceded to be the best yacc variant + available. In contrast to bison, it is written to avoid dependencies + upon a particular compiler. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['ftp://invisible-island.net/byacc'] +sources = [SOURCELOWER_TGZ] +checksums = ['27cf801985dc6082b8732522588a7b64377dd3df841d584ba6150bc86d78d9eb'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["bin/yacc"], + 'dirs': [] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e4b34a6f113998d8ff561f793dc3eb53b8a74cac --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' + +description = """ + bzip2 is a freely available, patent free, high-quality data compressor. It + typically compresses files to within 10% to 15% of the best available + techniques (the PPM family of statistical compressors), whilst being around + twice as fast at compression and six times faster at decompression. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} +checksums = ['a2848f34fcd5d6cf47def00461fcb528a0484d8edef8208d6d2e2909dc61d9cd'] + +source_urls = ['http://www.bzip.org/%(version)s'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gimkl-2017a.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e5eb2cbd9d1b0e9a2b3c1985f97b1cb49c2e2536 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gimkl-2017a.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'version': '2017a', 'name': 'gimkl'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb index 98b5be9cc78104fcdcdca7b768973005f38233f5..de682d1d50f9dfb3dc6a29839ba8d57659c7c2c2 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb index a459a2b2ae817c1829419c3efd282589efc658e0..ceeb82f27ddb9a57b8be73d4f9a1930c202de110 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb index 574d59a93d86de55fe22ee843905e6cbee0bf4c7..4747b56abdb9ccb3c60a73f9de086562e16e2588 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb index e4650118de675db9f57e90048e7625a2119ef569..98790631352c46486f9ef31ea2047dbb0ad01352 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , George Tsouloupas diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb index 2fdb2ffa3dd765a3b7e3049c29125cb8a213445e..6304e114409cc614e0a36c1012ba385fcd3545e9 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb index c3e01a8650558ef7e96a5aa408471491e93a6d08..1d1c993287f619da1a75324c1bb70a9ddd3af703 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb index 5563d4c561422f70dd3711659e9552d51d59f8ed..81ac44439d9c8bb1da36bc09a8c90da5e2302417 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb index 268e5321921fd0de713f902f02510d7f97fa57f1..9c71be82909f772ebab6a87cf04102c620fd6ecc 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb index 832db33507641bc6a63a00d3e30db8b7d9297c97..a251b7271bae81e372a59514db85e9e25d5378df 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb index 741d95b54532b47b57dfee212991602a14564da1..47badeab0fc5e8cbe8eac24a65ac4ab5fd7462ee 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.6-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/c/CDO/CDO-1.8.1-intel-2017a.eb b/easybuild/easyconfigs/c/CDO/CDO-1.8.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1e3e7c4c7698f8dd1f1c0900072853d7ab69df54 --- /dev/null +++ b/easybuild/easyconfigs/c/CDO/CDO-1.8.1-intel-2017a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'CDO' +version = '1.8.1' + +homepage = 'https://code.zmaw.de/projects/cdo' +description = """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://code.zmaw.de/attachments/download/14271/'] +checksums = ['54498438de788f245d47499efad7966c'] + +dependencies = [ + ('HDF5', '1.8.18'), + ('netCDF', '4.4.1.1', '-HDF5-1.8.18'), + ('YAXT', '0.5.1'), +] + +configopts = "--with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF" +# fix for linking issues with HDF5 libraries for libcdi, should link with both -lnetcdf and -lhdf5_hl -lhdf5 +prebuildopts = "find libcdi -name Makefile | xargs sed -i 's/-lnetcdf -lnetcdf/-lnetcdf -lhdf5_hl -lhdf5/g' && " + +sanity_check_paths = { + 'files': ['bin/cdo'], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb index 6709e178016a6cc821e87bf3b0b94f8a473e3fef..3a724109748c2b5254db070f7e51110aae0fa2de 100644 --- a/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.8.1-foss-2015a-GLib-2.48.2-Python-2.7.11.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.8.1-foss-2015a-GLib-2.48.2-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..874fac82e51172b6f13218ed99ee34c1de36bbc8 --- /dev/null +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.8.1-foss-2015a-GLib-2.48.2-Python-2.7.11.eb @@ -0,0 +1,38 @@ +name = 'CGAL' +version = '4.8.1' +gmpver = '6.0.0a' +pyver = '2.7.11' +glibver = '2.48.2' +versionsuffix = '-GLib-%s-Python-%s' % (glibver, pyver) + +homepage = 'http://www.cgal.org/' +description = """The goal of the CGAL Open Source Project is to provide easy access to efficient + and reliable geometric algorithms in the form of a C++ library.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'strict': True} + +source_urls = ['https://github.com/%(name)s/%(namelower)s/releases/download/releases%2F%(name)s-%(version)s'] +sources = [SOURCE_TAR_XZ] +checksums = ['1cbcb3f251822766ed3d744f923c782d'] + +dependencies = [ + ('Boost', '1.60.0'), + ('GLib', glibver), + ('GMP', gmpver, '', ('GCC', '4.9.2')), + ('libGLU', '9.0.0', '-Mesa-11.2.1'), + ('MPFR', '3.1.2', '-GMP-%s' % gmpver), + ('Qt', '4.8.7', versionsuffix), +] + +configopts = "-DCMAKE_VERBOSE_MAKEFILE=ON " +configopts += "-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include\;$EBROOTLIBGLU/include " +configopts += "-DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s " % SHLIB_EXT +configopts += "-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s " % SHLIB_EXT + +builddependencies = [ + ('CMake', '3.4.1'), + ('Eigen', '3.2.9'), +] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb b/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb index 83fba54e753e54e0d6c0b5c279e956e254cd5395..a951a89a48ef6ca83deef82a503a240e8678c4bd 100644 --- a/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb +++ b/easybuild/easyconfigs/c/CHASE/CHASE-20130626.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e8a86bb97c4a160003f2a0f99d22a9a6aa3971a6 --- /dev/null +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49-GCCcore-6.4.0.eb @@ -0,0 +1,51 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'CLISP' +version = '2.49' + +homepage = 'http://www.clisp.org/' + +description = """ + Common Lisp is a high-level, general-purpose, object-oriented, dynamic, + functional programming language. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE + '/release/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['CLISP-%(version)s_fix-readline.patch'] + +checksums = [ + '8132ff353afaa70e6b19367a25ae3d5a43627279c25647c220641fed00f8e890', # clisp-2.49.tar.bz2 + '903ca7367721e5bfe216fd8151659c4d127739311fac61f812e0031faec100ea', # CLISP-2.49_fix-readline.patch +] + + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('DB', '6.2.32'), + ('libffcall', '1.13'), + ('libreadline', '7.0'), + ('libsigsegv', '2.11'), + ('PCRE', '8.41'), + ('zlib', '1.2.11'), +] + +prebuildopts = "cd src && " +preinstallopts = prebuildopts + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/clisp', 'lib/%(namelower)s-%(version)s/base/lisp.a'], + 'dirs': ['share/aclocal', 'share/doc'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/CLISP/CLISP-2.49_fix-readline.patch b/easybuild/easyconfigs/c/CLISP/CLISP-2.49_fix-readline.patch new file mode 100644 index 0000000000000000000000000000000000000000..44e4e73952e73fd17f7f75492ac2a8d906bc192c --- /dev/null +++ b/easybuild/easyconfigs/c/CLISP/CLISP-2.49_fix-readline.patch @@ -0,0 +1,17 @@ +obtained from https://sourceforge.net/p/clisp/bugs/688/ + +$NetBSD: patch-modules_readline_readline.lisp,v 1.1 2016/09/20 14:10:25 wiz Exp $ + +rl_readline_state changed from int to unsigned long in readline-7.0. + +--- modules/readline/readline.lisp.orig 2010-01-06 22:18:03.000000000 +0000 ++++ modules/readline/readline.lisp +@@ -424,7 +424,7 @@ name in ~/.inputrc. This is preferred wa + "The version of this incarnation of the readline library, e.g., 0x0402.")) + (def-c-var gnu-readline-p (:name "rl_gnu_readline_p") (:type int) + (:documentation "True if this is real GNU readline.")) +-(def-c-var readline-state (:name "rl_readline_state") (:type int) ++(def-c-var readline-state (:name "rl_readline_state") (:type ulong) + (:documentation "Flags word encapsulating the current readline state.")) + (def-c-var editing-mode (:name "rl_editing_mode") (:type int) + (:documentation "Says which editing mode readline is currently using. diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.6.1.eb b/easybuild/easyconfigs/c/CMake/CMake-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..d19958612286520d79cc119230a9d6e01832cb06 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.6.1.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.6.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +# Use OS dependencies in order to ensure that CMake can build software that +# depends on them +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel'), 'ncurses-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..23aa365a15dd085320c9178d8fb7f8796f34a28f --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.3.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.8.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.27'), +] + + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..80d38b2735039a8dcc385bbfc78a6ac1f6041416 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.8.2-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.8.2' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['da3072794eb4c09f2d782fcee043847b99bb4cf8d4573978d9b2024214d6e92d'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..3fbbcb5eaaa0480b3872a960f6eb8c488bc408d2 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' + +description = """ + CMake, the cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES' + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0c'), +] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb b/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..deece4acb7c2d38f176498fffa6289ba2baf6344 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.9.1.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.9.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb'] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +# Use OS dependencies in order to ensure that CMake can build software that +# depends on them +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel'), 'ncurses-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CNVnator/CNVnator-0.3.3-foss-2016b.eb b/easybuild/easyconfigs/c/CNVnator/CNVnator-0.3.3-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..83fea791407c5202020a99a5888d22b9b39f0dac --- /dev/null +++ b/easybuild/easyconfigs/c/CNVnator/CNVnator-0.3.3-foss-2016b.eb @@ -0,0 +1,40 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: CCPL +# +# Notes:: +## + +easyblock = 'CmdCp' + +name = 'CNVnator' +version = '0.3.3' + +homepage = 'https://github.com/abyzovlab/CNVnator' +description = """ a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads +""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = ['v%(version)s/%(name)s_v%(version)s.zip'] +source_urls = ['https://github.com/abyzovlab/CNVnator/releases/download'] + +dependencies = [ + ('Perl', '5.24.0'), +] + +skipsteps = ['build'] + +files_to_copy = [(['cnvnator2VCF.pl'], 'bin')] + + +sanity_check_paths = { + 'files': ['bin/cnvnator2VCF.pl'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb index 7f2755eaba59e0985222fc89c2b130653afc453e..0ede673dd5dacf63ef85bd5b591282024b57b0a3 100644 --- a/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb index b60083b2b25384326d5e375064d468eeafb77621..b276c15679f8274b952819834050f6f134224340 100644 --- a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb +++ b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-proteins.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb index 41ffea3e50b9484c18167e39191d078fbf5bb66e..67bfcf476e8328709a4aad41d24d333cb50333a4 100644 --- a/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb +++ b/easybuild/easyconfigs/c/CONTRAlign/CONTRAlign-2.01-goolf-1.4.10-rna.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10-ipi.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10-ipi.eb index 7188e62917bfc8f1ab2a30c9afc3b1981d470ca1..0a291108aec654fbc738c21a71800b29b4b94e33 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10-ipi.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10-ipi.eb @@ -32,6 +32,6 @@ dependencies = [('Libint', '1.1.4')] parallel = 1 # about 100 tests fail -ignore_regtest_fails=True +ignore_regtest_fails = True moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10.eb index 5c6f21e19503adef60c533a883c482a7b2736655..985781685df78e4d1bff4c937f08e3f07b65c6f4 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.4.0-goolf-1.4.10.eb @@ -14,7 +14,7 @@ source_urls = ['http://sourceforge.net/projects/cp2k/files/'] sources = [SOURCELOWER_TAR_BZ2] patches = [ - 'CP2K-%(version)s-fix_compile_date_lastsvn.patch', + 'CP2K-%(version)s-fix_compile_date_lastsvn.patch', 'do_regtest_nocompile.patch' ] @@ -30,6 +30,6 @@ dependencies = [('Libint', '1.1.4')] parallel = 1 # about 100 tests fail -ignore_regtest_fails=True +ignore_regtest_fails = True moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb index df760b1c153662d76a06eda178f3cc9f008e9a2c..a4e80549b5695c2d908525f8336aee018e5978c8 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb @@ -37,7 +37,6 @@ maxtasks = 1 # need to set OMP_NUM_THREADS to 1, to avoid failed tests during regression test # without this, 32 tests (out of 2196) fail -import os -os.environ['OMP_NUM_THREADS'] = '1' +omp_num_threads = '1' moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index 8997152413faa85db8140f20f6cced33c0d4b177..c2e6b4b40675988ece758818c8092db7454f274d 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb index 194a2991a96fed6eae335747c6363a930ae4d036..266db17b7378dfb46367388951fad3873d5c6220 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb index 437ebc2ce714067269494f28778dd979d86d7925..3213a317321c6bc3ef1e89509b60aeb10f526440 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb index 63bd33a5ba9ff6acfa129ff1a36e30cb25e6c023..41fb7a42e995be4bafc82a01e63966a4fb20970b 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb index c2fec1c504fc757696567fd4fa1914ca4f651ce0..bf2df9790e1915883124129e828aaa583baee73c 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb b/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb index 76cb0b94f93ad8e194242f21948db74ec1df4039..009755e0fb8ace8ecaf9a963241aa730e4d8fd3f 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-6.0.37.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb b/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb index 920ee4c4faaaa53963d81d4c5260c23ffd8767c1..d2a841d669159df9c24d36341e0453ccd3f19ac9 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-6.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb index eecde070965c12d94cf445a9491fe5aefe223fb5..e9316192308c20c114248f3c290f19f2d2f4dbe5 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-GCC-4.9.4-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University, Microway # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste, Eliot Eshelman diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 45b63f03802af0d912d6bf234f78669715fdf960..b9b41e5dca40550219cacff785e1af663955ef54 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University, # Forschungszentrum Juelich diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index 72651d5b5430553ccc9f96cedce0c96c36dc6ed8..0752dc6cc8569924eb61f06f8bafa52016db351c 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University, # Forschungszentrum Juelich diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb index b8b9c80a8dfe52f5ceff3631716f8f42f49ed28c..d6aba60dab854adc8f1d41fb62477f870ec09f7c 100644 --- a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb index e9bbed8bb408f80f991a353e8ed09453e22b2d0d..b4f49365df83d744d6d23fb195ad9d4c936d4fe4 100644 --- a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCCcore-4.9.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb index b0d7e2e41b23da175a7e8e513bf6b6d16f212f4c..0b19390665ed895268ad3013c94115013642e677 100644 --- a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb index 54bfcde59ba8a024b8da4af6bc770622f17b2468..8e66ed510b92a75b689d3bdd6f2728464a7fdef2 100644 --- a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb index d78acf92e21c6d7fb6595f765f6bb994a4f756f0..2131f933b4963003a79e981acb926a2fc29b8f29 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb index e0ea8f21ceee9e2bd0c220f4593c6a5eb1bc242c..e1386c970bc8e927c64d3405f9c9ff63b73b2b9e 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index a1aed2106ee54128d74f5f01f6781cd80868acd2..a5282bdd2a83d25e59b9f3b47348c8ae963a41ce 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index 0d583d38e14be6484d83c18fb88cd809688be9fb..a293117d133db4d9860cd4b4924441d105acb1cf 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index 9a54bec5f43666f06bc17a100be84f31e4474081..b85bbceaf913fc04cafd5d305317a551446685a6 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index 9f53c75fb211120326db36c2b96cdeadb2154dac..e6d5a956d7816b2fdb884cf2c9aa727dd5fd7de6 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb index 45906bfb005a3f28fa240978eb0df122305b7cbd..9d6afe2d9878fd826bd65c352178a94347152845 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb index 80c79f18595c4bc4325fcf593609537a3e41ea4b..3f3cf69376252c91b4c11e39ecb3cb2f9d37aa71 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Jordi Blasco (NeSI) # License:: MIT/GPL diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb index 289cbf479aa90f3ec8df38ffdfd009fe58a0be67..af2eb9103692613e6d441516fad7d45b9ccea439 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb index 665f1371cbdbf2eb8f7a0f9eb1815a7e6f00286b..1a131a403bcdd8a189ec922fb06df37370892a33 100644 --- a/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Check/Check-0.9.12-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb index d050aae52b8c56e1aade50d9f3e18d3cb23d55c2..509561f0766f258c88f92088dab188dc83b13686 100644 --- a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb +++ b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..319ec0d55c841b7ae15085ea5f5c9870b0819952 --- /dev/null +++ b/easybuild/easyconfigs/c/Circos/Circos-0.69-5-foss-2016b-Perl-5.24.0.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'Tarball' + +name = 'Circos' +version = '0.69-5' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://www.circos.ca/' +description = """Circos is a software package for visualizing data and information. + It visualizes data in a circular layout - this makes Circos ideal for exploring + relationships between objects or positions.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://circos.ca/distribution/'] +sources = [SOURCELOWER_TGZ] + +checksums = ['49b4c467ba871fa416013c47d69db9e6'] + +dependencies = [ + ('Perl', '5.24.0'), + ('GD', '2.66', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': ['lib/%(name)s'], +} + +modextrapaths = {'PERL5LIB': 'lib'} + +sanity_check_commands = [('perl', '-e "use Circos"')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb index 05ffad5f40050721abb9ab13ce5b834869f37acd..183e2860f5ad1ddd3f7baf9ca4204059603c168b 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb b/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb index 66ca5a1bc4f1542c3aa4d35772f89860ebc4580d..066a79dfcb66c7a8d826f4320ada86951749c324 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb index 5a1fdbfc0b386135687b8205f27d67b85c91c5f6..3c7681158200e80a096f517babadb49425b3f5b8 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb index 12a16f8dd544c1938ef8549e6f6376c4d19c1383..987ff2c9ae783a0179752d2de4583c70f3026776 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb index f425fcd86e4ed8f5da0d0062fc852448872ed2cc..d228769b61092bcfbe79b7b6707fb110a24c50b6 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 9d5881c5250a6cf474e9d06fc8a84adf17e36483..3478797af3a3ca7248fa1695f98c96152db24556 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb index bb31f282f683df73565a76cf2571cf135fbcbf05..e83e5346d7eb4a5395766ace4b41517f0fcf3059 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb index a76712524b49bcd774a310ab13baf91ea92b1b9d..d79fb1dcca2fa835a511d8ad7425ee22af887b4f 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb index ee437ef2f241e6a2657428b6386a029e70682ebc..961f0eb89193a1e9adc9cdf28e3a77a0a9f7ece7 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb index 9037365bc8267644191599bf3a1f9a87d774e81c..99e144ac87b47077dece02f1e754caf73b97ea23 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb index 23fe1ddcc97c66d723718c6137f9dc6f202d24fe..d2ce11eb6ab80d391561b1a2c1485070436c4e38 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.8.0-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb index 3c6cb72c88a688d2ab94ee9989c9e2add70eeb57..f8e1c1318f7fbf38fce3bb34b3d7aeca03753ad9 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb index bc4ee7373595c8b7eb775ae604c622e59d02b618..16b0d6500368a162d8a0604adef7c44561e42423 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.8.1-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans # Authors:: Dmitri Gribenko diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb index 2ddcf2b93a966536e58d0f3b66580713a020d497..444a7149323a7f1e2d40bcd1192b5dacb763b273 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb index 06226cf0b0a0ffc84b6aa27a0b262f226b8a0a87..4b16e09c523bb36d355a9e0474dd1237bace450c 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb index 4286aeb066ba9a24f31a8fb14ef946c85df819ee..333cd8348370d9aa0cc36196916b4e2cc0565ef8 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb index 2c61c0adb7d81a9fce6ab562c6cda4ce996f6d3a..d60a1926b6667bb212b4a54bb6c73a6b0143b995 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb index 2a03b23888fb7ac04a2adb1bd26f3cc7a9c83d8c..dd5edaff525d2071b2d1bec4d9f5a510ff72a670 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index de52a79a13ccbd698ec83a6f90c6c85c7829f6c8..2e811364776ab0cdfacdfd42c44464df38ff02f7 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 068dfd89ced990008cd1385315607cdc4f8d4d1f..5e25ce08f300908db57be8269e05d77a7bd72a78 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb b/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb index fce250c7cfae4b56a166207f7b859d240413fadd..1b697a0fc2ecb92cce35c20ea8a17a4347362878 100644 --- a/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb +++ b/easybuild/easyconfigs/c/ConnectomeWorkbench/ConnectomeWorkbench-1.2.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu @@ -27,7 +27,7 @@ modextrapaths = { } sanity_check_paths = { - 'files': ["bin_rh_linux64/wb_import", "bin_rh_linux64/wb_command", + 'files': ["bin_rh_linux64/wb_import", "bin_rh_linux64/wb_command", "bin_rh_linux64/wb_view"], 'dirs': ["resources"] } diff --git a/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb index 6a2974e5b4d07e2ea3e33a194cd7409d59d9eb2b..df729ad2ff421065e5686e8e43ed1d614cd794e0 100644 --- a/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/c/Cookiecutter/Cookiecutter-1.4.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -46,10 +46,10 @@ exts_list = [ }), ('binaryornot', '0.4.0', { 'source_urls': ['https://pypi.io/packages/source/b/binaryornot/'], - }), + }), ('Jinja2', '2.8', { 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], - }), + }), ('jinja2-time', '0.2.0', { 'source_urls': ['https://pypi.python.org/packages/source/j/jinja2-time/'], 'modulename': 'jinja2', diff --git a/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb index 1386d5329d13ceaafbf596142c20501f5b8a0be9..c89dad88b78a7d5895b1bff80545b4ddeeef7c0b 100644 --- a/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb +++ b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Mazur # Research IT # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 8e4f18d89d9e8dd3789eed378a881b206c9e26e3..82fce2b21b096375c4ea194cb0d6323ceca4740a 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index 0afa91c77f6cd4a8591732f73a97fcdebb733879..68607c8fb2d59e359ac289c9a175bf3218fee5d2 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb index 94f4a3ca61d3d4f4d7f3e3885f4c23b2e37f91a4..4ad949c6687e565e30643a3008bc609e2d92e4d8 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb index ad5e3d68d5de180e287c7481048196235d95a1f3..d6ae37f211a59ebbe258d193c0cf1ef2588331fc 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb index 5763a26ed17ff70921ed057ceb280f2779684ce5..b4f629e0718fd6a1b8aab25affe46c0dac9f1737 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb index c274b99b8c0149424a64fe7b4b6b293fb191ad3e..259be5408752b1c710b140421837b1be10d2d1ed 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb index 2ac3b5a935547750a024749a71bed1356b662225..44788c80416fdb662b0349b03883a5a87f024271 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3.4-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb index 7b8dca855454b089db498ab87d21136757cb1d8b..7e5d556bb7081fa220d0600fa660c80668a5d072 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index 25b9208f0e418c4eb25e097bca73df4ad93d3c5e..4c2199c2b2973ad7946cb8fe4749c560c387ac21 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index 9c37cd717b93588153399ef57f9e729dccc63e73..0aa76e0d7c35568e2f2e4b9c8ff766abeb9e9606 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb index 6751cec53076cba6266b1fd8a819dbede980bb93..0afef46d296fcedcb6ea7242063c4f3c697eee7c 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..9875d3b964648bd3104cf4f07b2ed26e9fd0e0a0 --- /dev/null +++ b/easybuild/easyconfigs/c/Cython/Cython-0.26-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,35 @@ +easyblock = 'PythonPackage' + +name = 'Cython' +version = '0.26' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'https://pypi.python.org/pypi/Cython/' + +description = """ + The Cython language makes writing C extensions for the Python language as easy + as Python itself. Cython is a source code translator based on the well-known + Pyrex, but supports more cutting edge functionality and optimizations. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['4c24e2c22ddaed624d35229dc5db25049e9e225c6f64f3364326836cad8f2c66'] + +builddependencies = [ + ('binutils', '2.28'), + ('Python', pyver, pysubver), +] + +sanity_check_paths = { + 'files': ['bin/cygdb', 'bin/%(namelower)s', + 'lib/python%s/site-packages/%%(namelower)s.py' % pyshortver], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pyshortver], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.49.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.49.1-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9bb277e7b11d1a695c325ab87e9270849e81261e --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.49.1-GCCcore-5.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.49.1' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +builddependencies = [('binutils', '2.26', '', True)] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# dependencies = [('OpenSSL', '1.0.1t')] +# configopts = "--with-ssl=$EBROOTOPENSSL" + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.52.1-gimkl-2017a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.52.1-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..85452813a1986d9f1d4f214dcef7995606e5dc06 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.52.1-gimkl-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.52.1' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..852ba24f5c3cee583aba9a04d41575f7ef2c89c1 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.54.1-GCCcore-6.4.0.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.54.1' + +homepage = 'http://curl.haxx.se' + +description = """ + libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, + LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. + libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP + form based upload, proxies, cookies, user+password authentication (Basic, + Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling + and more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://curl.haxx.se/download/'] +sources = [SOURCELOWER_TAR_GZ] + +osdependencies = [ + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.1.0e') + ('zlib', '1.2.11'), +] + +configopts = '--with-zlib' +# configopts += '--with-ssl=$EBROOTOPENSSL' + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb b/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb new file mode 100755 index 0000000000000000000000000000000000000000..860d309726c52e4d87b26a69e9f1a4f8191f5d7e --- /dev/null +++ b/easybuild/easyconfigs/c/cadaver/cadaver-0.23.3-intel-2017a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'cadaver' +version = '0.23.3' + +homepage = 'http://www.webdav.org/cadaver/' +description = "cadaver is a command-line WebDAV client for Unix." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.webdav.org/cadaver/'] +sources = [SOURCE_TAR_GZ] + +checksums = ['fd4ce68a3230ba459a92bcb747fc6afa91e46d803c1d5ffe964b661793c13fca'] + +sanity_check_paths = { + 'files': ['bin/cadaver'], + 'dirs': ['share/man'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index 3bf08594dade5bb208ad543a0d55ced42ceb0c79..97cad490a6c286219bf23be1f31c5576c73561e3 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index 84c3e7baf8976c4a1ac0b268c5cb6cd21ed0a6ef..98555a7a7aa45120702d43747b1c37d513c27de1 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb b/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb index 3880874512c56ff4d63b4adddc28775cfa39b8f0..1db87d30570004203239bbe7ce9269fb3106a563 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb b/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb index 66a9fe225ab7cd620e3562b0a4e585681e64249c..f857d10d3a7174acda3eb4527d567cd67252994e 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb b/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb index f3c8b6240f9df14e1034a58ba9c12087b5a305a4..66d52c698cf5329d24e201c9ef94558b705f5125 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.3.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index bb9da36f809070bcfb07a563009a7f7944a35c4b..a04ee2f9d79f8ad8bbda96008868be15d9cbba8e 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index 107d08647f5b251b367e43160f1efbaaadeb4867..30c2c7c615498b48f29091f1ef209b22d24f318f 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index 9684225cb765a4dfd9bc485f53e3c31049c7f0bb..2c027621e8855fde3508029a3996128e90c8e81e 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index eb6eb8ffbf17dd8df2f6ca1ec83fa5598b0facc5..fe9db263243f5347ac2abf1f5b2de17f01a2a460 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb index 60152e7602ae438bc42f8e51b770499f6262044f..f6b9d86aa2330aa9ba7f0be6753fe35e480d27c5 100644 --- a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb index 5bcd0e1aa3b8e9cb6ad86b7d7fc2298851393a97..ccc5cdbff906eb46b95048cd57cd318004bf38e2 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb index aaab290dcfb394320a21e904a5c2c4c088167ec7..1c8da2633c2a387b6cc6a7cbafd884ef2ca957d9 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-CUDA-7.5.18.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb index 536c2f33c677c08b16964966b0a22da92b2e17cf..97236ec5ffb83861fc6b2e3d6649c3dc05e9589e 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.0-rc.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb index 08976a1f68f171699cf1208de0fd2dbae77a8b08..655063d17903a61cd2521b810cfd77d16e7d6779 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-5.1-CUDA-8.0.44.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb b/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb index 942648ea47a34c4379d17330b53738b3afaa5a84..29bbebe51b359bcd23b631f564bd05022688f195 100644 --- a/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb +++ b/easybuild/easyconfigs/c/cuDNN/cuDNN-6.0-CUDA-8.0.61.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ## diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb index d487d344f68c2418b5e6237e98eb2754e7a0fee0..15b0a97b3bf65997fd66c3bc5a6667f6b3259303 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb index aceb217de4bbfa5d6c0c8dbdeb6f67d1f4f6bc5c..78181eace37bf47522fe846ad1af547e4631b64a 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb index 9d2802684e4256bd65c38f334447f8330712656a..2eb271b2cb3cd1dc87c2aac017cc0a2ad79d7291 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb index a4f51697618d167202a3dc4baeb74b68e7dab78b..0a914d43dd62c041015a7ea517381f9936d47e36 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb index edcade804404d5db7af0eb6e827e27a31a096a1d..b5fa67bd28a167d9f6fae3d6db3a79d1445f91c1 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb index 6d660f5bc5759bfa8c74125df699be66f22aa5f1..9fd455ea4e938c03c854f94d5cb77aba030551ef 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb index 7e135e50214c14aa0f5cb77f4a8eccc7e5e019a9..8fd82f9c4cac4e1cb19df105bf48529678fb6961 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb index ccfea593725c8b24ee0f475ea82fa5ec76d0c048..4eaa0d8f1e97595e8070b7a5d495788f2e69a575 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb index 8898d1ce85b464d328d07ff9e6c87d14e5ea96a0..1f2a8db354fea44a7146b3f6a9e76d6f17cb1bbf 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb index 6c74a88bb40ae4186d0d68dfdfd4f2e443e3eb43..2508964d7f301163a9170005ee92466f870ade42 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb index 99d5dfa45cb48002f6cb0de3fd99efc6b5aa80f3..65f2550e40b1d48570764ff09c021b2821dc9f2e 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb index 63398f9cb069861aa85ee45a47c1a2c570026f23..9397e22d2b5b9fdf8d103d5bf3fb46330799f5c5 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/d/DB/DB-6.0.30-foss-2015a.eb b/easybuild/easyconfigs/d/DB/DB-6.0.30-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..32a7842e4473dd1035302890f972d8fe53792f55 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-6.0.30-foss-2015a.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '6.0.30' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, requires registration +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["include/db.h"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..7182e6afe15c3b4ef86072304119453582c94dac --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-6.2.32-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +name = 'DB' +version = '6.2.32' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' + +description = """ + Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, +# requires registration +sources = [SOURCELOWER_TAR_GZ] +checksums = ['a9c5e2b004a5777aa03510cfe5cd766a4a3b777713406b02809c17c8e0e7a8fb'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/db_archive', 'include/db.h', 'lib/libdb.a', + 'lib/libdb.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-6.2.32-intel-2017a.eb b/easybuild/easyconfigs/d/DB/DB-6.2.32-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0eb67b8e2c24d869a7924099c5687f5e7c0c0e87 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-6.2.32-intel-2017a.eb @@ -0,0 +1,19 @@ +name = 'DB' +version = '6.2.32' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, requires registration +sources = [SOURCELOWER_TAR_GZ] +checksums = ['a9c5e2b004a5777aa03510cfe5cd766a4a3b777713406b02809c17c8e0e7a8fb'] + +sanity_check_paths = { + 'files': ['include/db.h', 'lib/libdb.a', 'lib/libdb.%s' % SHLIB_EXT], + 'dirs': ['bin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.042-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.042-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..0db79a7f27238af5e2c81bafad22013ac78fc391 --- /dev/null +++ b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.042-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,33 @@ +easyblock = 'PerlModule' + +name = 'DBD-mysql' +version = '4.042' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://search.cpan.org/dist/DBD-mysql/lib/DBD/mysql.pm' +description = """Perl binding for MySQL""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://cpan.metacpan.org/authors/id/M/MI/MICHIELB/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Perl', '5.24.1'), + ('MariaDB', '10.1.24'), + ('zlib', '1.2.11'), + # OS dependency should be preferred if the os version is more recent then this version + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1q'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +options = {'modulename': 'DBD::mysql'} + +sanity_check_paths = { + 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DBD/mysql.pm'], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DBD/mysql'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DBus/DBus-1.10.12-intel-2016b.eb b/easybuild/easyconfigs/d/DBus/DBus-1.10.12-intel-2016b.eb index 2a15cb846cca6d9a7d3769865a94b52c0655db03..7697871a459890b24782b6c0390f2ad2ab19c00b 100644 --- a/easybuild/easyconfigs/d/DBus/DBus-1.10.12-intel-2016b.eb +++ b/easybuild/easyconfigs/d/DBus/DBus-1.10.12-intel-2016b.eb @@ -16,7 +16,7 @@ source_urls = ['http://dbus.freedesktop.org/releases/dbus'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/dbus-%s' % x for x in ['cleanup-sockets', 'daemon', 'launch', 'monitor', 'run-session', + 'files': ['bin/dbus-%s' % x for x in ['cleanup-sockets', 'daemon', 'launch', 'monitor', 'run-session', 'send', 'uuidgen']] + ['lib/libdbus-1.%s' % x for x in ['a', SHLIB_EXT]], 'dirs': ['include', 'share'] diff --git a/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb b/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..99bd5ca7ab8edb9c7c64e9d3d13deffb550044aa --- /dev/null +++ b/easybuild/easyconfigs/d/DBus/DBus-1.10.20-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'DBus' +version = '1.10.20' + +homepage = 'http://dbus.freedesktop.org/' + +description = """ + D-Bus is a message bus system, a simple way for applications to talk + to one another. In addition to interprocess communication, D-Bus helps + coordinate process lifecycle; it makes it simple and reliable to code + a "single instance" application or daemon, and to launch applications + and daemons on demand when their services are needed. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://dbus.freedesktop.org/releases/dbus'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e574b9780b5425fde4d973bb596e7ea0f09e00fe2edd662da9016e976c460b48'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('expat', '2.2.1'), +] + +sanity_check_paths = { + 'files': ['bin/dbus-%s' % x for x in + ['cleanup-sockets', 'daemon', 'launch', 'monitor', + 'run-session', 'send', 'uuidgen']] + + ['lib/libdbus-1.%s' % x for x in ['a', SHLIB_EXT]], + 'dirs': ['include', 'share'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cpu.eb b/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cpu.eb index 86590d12e7f7a59c61b0a857466a07c87a4e8fa6..088f873ddb01d02db3e2f87e0285cdc6b5e00067 100644 --- a/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cpu.eb +++ b/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cpu.eb @@ -14,10 +14,10 @@ toolchain = {'name': 'CrayGNU', 'version': '2015.11'} dependencies = [ ('CMake', '3.5.0'), - ('spglib', '1.7.3'), + ('spglib', '1.7.3'), ('NFFT', '3.3.0'), ('GSL', '2.1'), - ('gtest', '1.7.0'), + ('gtest', '1.7.0'), ('cray-hdf5/1.8.13', EXTERNAL_MODULE), ] diff --git a/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cuda.eb b/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cuda.eb index 231148074a75ee35be224392b89c4639fc238f33..3f3f75acda1df46e7e8c92ff72ff1239957aae8d 100644 --- a/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cuda.eb +++ b/easybuild/easyconfigs/d/DCA++/DCA++-1.0-CrayGNU-2015.11-cuda.eb @@ -14,7 +14,7 @@ toolchain = {'name': 'CrayGNU', 'version': '2015.11'} dependencies = [ ('CMake', '3.5.0'), - ('spglib', '1.7.3'), + ('spglib', '1.7.3'), ('NFFT', '3.3.0'), ('GSL', '2.1'), ('gtest', '1.7.0'), diff --git a/easybuild/easyconfigs/d/DIAL/DIAL-2011.06.06-foss-2016a.eb b/easybuild/easyconfigs/d/DIAL/DIAL-2011.06.06-foss-2016a.eb index 1a6bd6a25d96476b8b2125f7a6f21f84afd559c9..82b2e17255193a0f44512b525d0ed1f70648c169 100644 --- a/easybuild/easyconfigs/d/DIAL/DIAL-2011.06.06-foss-2016a.eb +++ b/easybuild/easyconfigs/d/DIAL/DIAL-2011.06.06-foss-2016a.eb @@ -21,7 +21,7 @@ dependencies = [ ] binaries = ['assemble', 'assemble1', 'assemble_illumina', 'build_sff_index', 'convertFastqFasta', - 'cull_components', 'DIAL', 'filter', 'filter_clusters', 'fish_clusters', 'make_template', + 'cull_components', 'DIAL', 'filter', 'filter_clusters', 'fish_clusters', 'make_template', 'masker', 'partition', 'remove_clones', 'remove_clusters', 'update', 'update_clusters', 'update_status'] diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index f6fd6246c403ce2d10745ddcc4f8a1c7ccf870b6..bb425b52f012aa01055f68a7438bee341493052e 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb index 19f96d592f8af9b6ebf3af1b1590d1adb5e62e8b..2c2bb31863f1bb52fa337da226fb2db517952ecf 100644 --- a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.8.35-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..3d1b5aebca00a5ae7c14e9c1dec1d712e55e15f9 --- /dev/null +++ b/easybuild/easyconfigs/d/DIAMOND/DIAMOND-0.9.6-goolf-1.7.20.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = "CMakeMake" + +name = 'DIAMOND' +version = '0.9.6' + +homepage = 'https://github.com/bbuchfink/diamond' +description = """Accelerated BLAST compatible local sequence aligner""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['https://github.com/bbuchfink/diamond/archive/'] +sources = ['v%(version)s.tar.gz'] + +separate_build_dir = True + +builddependencies = [('CMake', '3.4.3')] + +dependencies = [ + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/diamond'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb index 04e4fd7a51b38fed6e7cecb2d41936455ae7757a..27c3a7d1efa5172aae288e75266dd3c1ebe787cf 100644 --- a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb +++ b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.4.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb index 1687e9b44d4c94e5eada1b2d3161de2ad2f996b6..f7a7f714c1157fba654c6e876404edc4b26bd854 100644 --- a/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb +++ b/easybuild/easyconfigs/d/DMTCP/DMTCP-2.5.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index 76c48d1e81ff8cb00233694740bacd3c7bfb69eb..2a945fa40d64f97f3443e7f3ad109482c30fe5bd 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb index 7d7b15088e5cb84bfe4f68f38ca30def4bb5195b..000354596ff51ea32d273af961365a18ebc4d984 100644 --- a/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb b/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb index 5106c4165f971af9781a2a65015785d2f4977e0f..e27f766c81a6eab95d472defe3a58d790ffeb122 100644 --- a/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/d/DicomBrowser/DicomBrowser-1.7.0b5-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index cfed427bb703e95c7928f3af2d1d08401843f529..730559ad83ac321894f9695ffe108c3d0569cc7f 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 9021d61ff682579268d991bbc57f464d881455b5..94063017d315e01d26129208190911ab665df28e 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb index 03dd2d88f6baf62d75c9f51b3c47a4d4716264f5..a48cfb999d2fbc4d2dbee9a101009cd756cae1be 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/d/Doris/Doris-4.04beta4-intel-2017a.eb b/easybuild/easyconfigs/d/Doris/Doris-4.04beta4-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ad3c1ecff365e74eeb313a0c711ed0ce77b953fc --- /dev/null +++ b/easybuild/easyconfigs/d/Doris/Doris-4.04beta4-intel-2017a.eb @@ -0,0 +1,16 @@ +name = 'Doris' +version = '4.04beta4' + +homepage = 'http://doris.tudelft.nl/' +description = "Delft object-oriented radar interferometric software" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://doris.tudelft.nl/software/'] +sources = ['doris_v%(version)s.tar.gz'] + +dependencies = [ + ('FFTW', '3.3.6'), +] + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/d/Doris/Doris-4.06beta2-intel-2017a.eb b/easybuild/easyconfigs/d/Doris/Doris-4.06beta2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..190f829952c370a18c8a074b15749e0d9e84ac88 --- /dev/null +++ b/easybuild/easyconfigs/d/Doris/Doris-4.06beta2-intel-2017a.eb @@ -0,0 +1,16 @@ +name = 'Doris' +version = '4.06beta2' + +homepage = 'http://doris.tudelft.nl/' +description = "Delft object-oriented radar interferometric software" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://doris.tudelft.nl/software/'] +sources = ['doris_v%(version)s.tar.gz'] + +dependencies = [ + ('FFTW', '3.3.6'), +] + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f55dbe85834e5422ae581689e016b77ea96c38a9 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCCcore-5.4.0.eb @@ -0,0 +1,21 @@ +name = 'Doxygen' +version = '1.8.11' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('CMake', '3.7.1'), + ('flex', '2.6.0'), + ('Bison', '3.0.4'), +] + +parallel = 1 + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-gimkl-2017a.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9772b7c6599a0a595c45f2d755eefc5ec369f107 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.13-gimkl-2017a.eb @@ -0,0 +1,21 @@ +name = 'Doxygen' +version = '1.8.13' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('CMake', '3.6.1'), + ('flex', '2.6.3'), + ('Bison', '3.0.4'), +] + +parallel = 1 + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/davix/davix-0.6.6-intel-2017a.eb b/easybuild/easyconfigs/d/davix/davix-0.6.6-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f4e5dff77590ac6f10c468a0a3b3bf9e65a1d172 --- /dev/null +++ b/easybuild/easyconfigs/d/davix/davix-0.6.6-intel-2017a.eb @@ -0,0 +1,37 @@ +easyblock = 'CMakeMake' + +name = 'davix' +version = '0.6.6' + +homepage = 'http://dmc.web.cern.ch/projects/davix/home' +description = """The davix project aims to make file management over HTTP-based protocols simple. + The focus is on high-performance remote I/O and data management of large collections of files. + Currently, there is support for the WebDav (link is external), Amazon S3 (link is external), + Microsoft Azure (link is external), and HTTP (link is external) protocols.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/cern-it-sdc-id/davix/archive/'] +sources = ['R_%s.tar.gz' % version.replace('.', '_')] + +builddependencies = [ + ('CMake', '3.8.1'), + ('LibUUID', '1.0.3'), + ('gtest', '1.8.0'), + ('Doxygen', '1.8.13'), +] + +dependencies = [ + ('libxml2', '2.9.4'), + ('gSOAP', '2.8.48'), + ('Boost', '1.63.0', '-Python-2.7.13'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ['bin/davix-%s' % x for x in ['get', 'http', 'ls', 'mkdir', 'mv', 'put', 'rm']], + 'dirs': ['include', 'lib64'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..7aaefec7f248b1ac19da9f2fe296bcec8f552896 --- /dev/null +++ b/easybuild/easyconfigs/d/destiny/destiny-2.5.6-intel-2017a-R-3.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'RPackage' + +name = 'destiny' +version = '2.5.6' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://bioconductor.org/packages/destiny' +description = "R packages to create and plot diffusion maps." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://bioconductor.org/packages/release/bioc/src/contrib/', + 'https://bioconductor.org/packages/devel/bioc/src/contrib/', +] +sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['134210f9b8d6d58309a1f886065175c723e2612b4be819beb9e9fe5707b0f2ac'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('R-bundle-Bioconductor', '3.5', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb index 7de0a8ea92b477766bba4f46be37401fc79f0bc0..3f7a8cf8e843ac37dbd718a356e52766ff90dd3f 100644 --- a/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/d/disambiguate/disambiguate-1.0.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -6,7 +6,7 @@ easyblock = "PythonPackage" name = 'disambiguate' -version = '1.0.0' +version = '1.0.0' versionsuffix = '-Python-%(pyver)s' homepage = "https://github.com/AstraZeneca-NGS/disambiguate" @@ -19,9 +19,9 @@ sources = ["v%(version)s.tar.gz"] dependencies = [ ('Python', '2.7.11'), - ('BamTools', '2.4.0'), - ('zlib', '1.2.8'), - ('Pysam', '0.9.0', versionsuffix), + ('BamTools', '2.4.0'), + ('zlib', '1.2.8'), + ('Pysam', '0.9.0', versionsuffix), ] # this application provides a python implementation and a C++ implementation diff --git a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb index 3d7e8e50d6cf192cc8bd3fbbec01c76237b3fdc9..b4f4f41636e1e7349cd60efd10d460af0bd9542f 100644 --- a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb index 33794a918dd487b17c24c5cf197a4525c5d6389d..60fff5c063d3f629db5f4107c1ec0e476744a1fe 100644 --- a/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/d/drFAST/drFAST-1.0.0.0-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb index c1c0d704374c238698e031660b63d594142c8a74..15ad25d3e8cd062956bc3efe851d568abf8733a4 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.0.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb index 198de40465b8b8a294510b264a683ac2d3cbbef6..7dd70ec70b754629b7ce67a3569d8d839fead97a 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb index a429626ec5c92fa89863ef5a08b803cd1947df44..1b6aee4f0ef503d90d4472b9bf3d0409fa1293af 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb index 5b6b65198e34c29b94bd5f7c56ba945529f829c8..13e8afdb7f350e35dedffb0e57f325598ae5ae52 100644 --- a/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb +++ b/easybuild/easyconfigs/e/EIGENSOFT/EIGENSOFT-6.1.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb index c9a900612fb30cfa5393ae4db3cbc215e68ff727..b23777f71c8b38ce48e7722e873e476af21ca171 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb index 97838620787634e0ae9535dc94c71b859e6dabf2..05d749936e513b493cf47cdb2d5773107827274c 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb index b188df034a8a9aadab7b836c52ff9cbae2d72f23..6168179ce80289887c5ca04f2461ff0c65cb556e 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb index 75d318f6703f42c5199b8126377a3f5c8ea80c5f..ee72d9cdc5b7c57c92e33da95f4eb29d6a23345e 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2016.05.004-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Authors:: Inge Gutheil , Alan O'Cais # License:: MIT/GPL diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb index 8ac9aea768a9d798d1eeccb4c6fe04cfa8ecefe7..5f261e1c14fd6d1321dc7283626f50989d80d689 100644 --- a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb index ba2c506ee5e9a285361752a4df4dc6d3c0f285e0..71841b9321bcbf823ea42a5bb89b4eed3ae9b48a 100644 --- a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index ee65cc074ef8d477dc0b9ec1f50e05211f03e55c..c8cce9a3c7e50f971d85ac5aad694f48c8f1dd1a 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index 176ffcb6bd9b366bcddee23283310613c518663a..0c4dfa07a3a21b281b1a9742f489fcdd5c4b6c27 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d6fa49965acbbaa53c106918eede28d1d9f82309 --- /dev/null +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.6.0-intel-2017a.eb @@ -0,0 +1,48 @@ +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# foss-2016b modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'EMBOSS' +version = '6.6.0' + +homepage = 'http://emboss.sourceforge.net/' +description = """EMBOSS is 'The European Molecular Biology Open Software Suite'. + EMBOSS is a free Open Source software analysis package specially developed for + the needs of the molecular biology (e.g. EMBnet) user community.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'ftp://emboss.open-bio.org/pub/EMBOSS/', + 'ftp://emboss.open-bio.org/pub/EMBOSS/old/%(version_major_minor)s.0', +] + +sources = [SOURCE_TAR_GZ] + +patches = ['EMBOSS_disable-embossupdate.patch'] + +dependencies = [ + ('libharu', '2.3.0'), + ('Java', '1.7.0_80', '', True), +] + +configopts = " --with-hpdf=$EBROOTLIBHARU " + +# jemboss.jar does not build in a parallel build +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + + ['lib/lib%s.a' % x for x in ['acd', 'ajax', 'ajaxdb', 'ajaxg', 'eexpat', 'ensembl', + 'epcre', 'eplplot', 'ezlib', 'nucleus']] + + ['share/EMBOSS/jemboss/lib/jemboss.jar'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/ESMF/ESMF-6.3.0rp1-intel-2017a-HDF5-1.8.18.eb b/easybuild/easyconfigs/e/ESMF/ESMF-6.3.0rp1-intel-2017a-HDF5-1.8.18.eb new file mode 100644 index 0000000000000000000000000000000000000000..7d428e69ac39513d9c6d80eaef9eb1c237212868 --- /dev/null +++ b/easybuild/easyconfigs/e/ESMF/ESMF-6.3.0rp1-intel-2017a-HDF5-1.8.18.eb @@ -0,0 +1,32 @@ +name = 'ESMF' +version = '6.3.0rp1' +versionsuffix = '-HDF5-1.8.18' + +homepage = 'http://sourceforge.net/projects/esmf' +description = """The Earth System Modeling Framework (ESMF) is software for building and coupling weather, + climate, and related models.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s_src.tar.gz' % '_'.join(version.split('.'))] + +patches = [ + 'ESMF-6.1.1_libopts.patch', + 'ESMF-%(version)s_fix-file-open-test.patch', +] + +dependencies = [ + ('netCDF', '4.4.1.1', versionsuffix), + ('netCDF-Fortran', '4.4.4', versionsuffix), + ('netCDF-C++4', '4.3.0', versionsuffix), +] + +buildopts = 'ESMF_NETCDF_INCLUDE=$EBROOTNETCDFMINFORTRAN/include ' +buildopts += 'ESMF_NETCDF_LIBS="`nc-config --libs` `nf-config --flibs` `ncxx4-config --libs`"' + +# too parallel causes the build to become really slow +maxparallel = 8 + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index 209b0e8d818c0dbd4bc1666231958ef50b8b4461..f31aca4bb2a868d29bf3a8887d70b15330c8eb5f 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index 80ab0978a15839098c444bb74947496b7259a242..250bf7f6ef8dfaa124528f04479e2798ec078db8 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index 9ad3efca4c6877e5e16fce297c064ea26e70b403..16a651c9b377ffaa74b1915a439f9e3a885832c9 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index 525e2ebf3e22dbde604e44c2fcb7c5127603aaac..be9504c095ee6765550cbef56bb5ed66fe7aa993 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb index 17f0b9d1607f00acf7424b9b79d6ac7b69592647..cfe2dfd1dab0704c88bb568fadedebffaf88cae5 100644 --- a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb index 0e4a07c55e65a3f32f1761ceccddee3a2b152da9..502c0c493a6d05b3ecf4e9c8a9127492e8f5a5c2 100644 --- a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb +++ b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou @@ -30,7 +30,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ["bin/etsf_io"], + 'files': ["bin/etsf_io"], 'dirs': [] } diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb index 6a13fbccbd8f4401050c007bfe00c0c768de2fcb..9b67e772905464c84e9b63da00607fdb8f1cff3a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb index 1fc508215ccbf06470f74092ed8e9c8d2367abaa..f6e48794a2d830a5c0851cda947ee6fc10d2b149 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb index aefe4f346169f8d120fedd616ce8a984c2e09d15..f65e4d33b76efb27fb8b2bf8347d12d085401d52 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.0.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb index aec17460aa5dbe6a99ebc81c0ea21db0c7a50ff2..b404084816b33ee92a6206fb11e76cee9523dae6 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.1.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb index 12381b6467594e51e7c0a72eecc2f1d6ebec76de..6d0b6bbd58f3cc0c0697c3c5e11551118721f927 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.10.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb index a8ef6b164a9b964adc76ea4709d4f46fae4c46d2..09d7412e21e34fac0ced121a20371ad0fe055516 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.11.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb index d2df7f198825649c26f9ce01b169590df6c6010c..3e0b4775515849a63fd81c253fdb653acc46f86b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.11.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb index 345d210d28808482b1fa55a0bf8244ea57b7447e..fda0eaa230fcbf614b054e9f7a4bce7e7c8f7cac 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.12.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb index 97720876b9ae4bc7c55cf787f3073fd784124f4d..e8bc170959202d9dd7ce5e5d4630ea83c064d9c3 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.12.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb index 0b5ba14c24eed3339f2a622a8466928f9021a46d..148881ec177ff35449dd756936f487e0e0643805 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.13.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb index 0176f2b558445f29da406a73f2c9a06f1bed41a1..a573ff7efb3dc81f8b63736d6b8172bfaa3194f9 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.14.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb index 3ae286c658871ad20c35f7910f70818b4a7450c9..017904a16a8a239348f2b77b449a9a7ffa63fba5 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.0" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb index b4fb5e015c40291f83a276909dd6a54b20cabf0f..4b605cc474349d7e31b9944eef673bebf18f3c26 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.1" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb index 9025d6b24b1a952859671c6dac582c7de33d073b..71ca7c902dbed5a6f02c83664e791065efd60241 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.15.2" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb index 2ac7d84426f452b786006f90244590b7344f1533..d694c3a975b87169a4d545dad2ddb4f820a94ecc 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.0" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb index a7a958a3ca37af9073ef83136407ee753917c692..777f78e3ada816fa98f7b6db1ac669f6f9bc37b4 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.1" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb index 26fbe953cd40b2e80848e9f7bae8a13973c24dde..5c38c0a98383b12e92a7d7872621f8228cdca9f3 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "1.16.2" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb index 84e658abed364e84e951911969e8a03347d18326..ee0fb34daf6454dfee2fca5bcd01cc82b3428c59 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.2.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb index 62ec5081923f69af3e279506575765af3afb9f65..0249a90b8dd6e7e492ec7584a59610416a92af3e 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.3.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb index f56094b5c06e2855738001b40c4f9b40fd07fd23..58e8279a68d0f80e28575a4fb09df82b6dabe539 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.4.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb index df9a262ab241c02e8d96c97f9e51b57ddb739036..1b589199e10d5e5265ac85307518cd63136ac241 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.5.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb index 9082a71a46b95b067d70f4ddf4b6e8e8ef51b612..95539b250fbe29b629bd80f78cc855458229f5d5 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.6.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb index a2164fa02d00ab10b3cf30fa8200066ef7474747..3caeb8de82c89ec92677768ea67546b4387560b2 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.7.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb index 8fa4a0a750ccd89e7243a5398430ba224c677f32..63848ea26b78fb4608eee55a92e12990b84aa196 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb index 1774b8976ce94d947dbcbfa6a015d6fbfab41e79..a99feae3bc2c1fa6c9ba9f7e3fd6292d989199d1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb index d990801ac27b0292808f1d37168d26d57b2755f0..f835d8df7748b374d78781688b85c99545e64716 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.8.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb index 97801124aa8f501633c3c5e1f1487259c730f6ad..74d11b79a17954cd72d27b144e85551389a09433 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '1.9.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb index 81d586f625359afef09048a9fda3bddeffa566c1..2fb2c7bbce39a9c7dede77cc7ffb2798f42bafc8 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = "2.0.0" -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index cb8c19e6065a5e2ecce964efe38aa511437550a2..b20ff4070bedcee54d023d8196fe1183296cc46c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.1.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb index 632563276e8bf65636e0eb936506eaa92b8dff46..1f6796bb5aa226edbbe6ca19d4c02b990b3f1e8b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.1.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb index 116950af4bdc21e32a31a82db11b1fd43995a663..e49097cb3fb0429b39386c3da7e9c10f64811432 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.2.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb index 6080ef8f0cee6ad26266040bdc8c4cca3c29e891..3e1199f516f9b5bdcc7a4ef152b756f126bf41a8 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.3.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb index bc8d7c8dd59491dab0111f12cd5741002f4ae199..0f1a2dfaa8afc5fecc639f462267da15dc98a1d6 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.4.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.4.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb index 37d212b3344d2cd6952f3c0e3051c2a8b7da5756..d04e3a4e315fc88f74ce8dabc617e281e0e78a9d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.5.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.5.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb index 01e4502a0900b86f27dccb328b5bf89d5be86d3e..c7485aea5fc0db2a4689cba7dd93df5e49f5af2d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.6.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb index 1ca29896e871f529687b320b23a2b1ae17faaf00..fcefd7777870b12a532d1ae8c3d9e9e04970cba7 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.7.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.7.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb index 07bb77b4539a9a97e657ef7ec5105ae40381ed84..ee8f725ccc73674a5d84127eff68e7744f732e4d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb index f166a5d5875478d6a27faba9136d6e4ddb18fc34..5785d7ac7a04fa26c7ed8cbe5fffd3953dda3f29 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb index b0edd36c9663cddb7eaecc34b4a8677864b16b4a..ef3430f3dedf002dee8d282b2fa6f223a972966f 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.8.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.8.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb index 09a04b73a8f427188cb2bc3f7e346eeb00d98ebf..1660b8e4a186060da46f781ccdf0541513b7fff2 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.9.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '2.9.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb index a77b43aaad9574d1e07c246452364acbd747d106..70b18de510279138dc10306fe678a72ef48e0fc8 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb index 3d9fd925081d44fddc3ea4e86387e07c21a9e64a..f26a42f001436ef9bba0bc6ec61c94b6320f44fa 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb index 708295ab3ce7e5757f0767fb13acac4f35fae2fd..f26040b3c7e0a304aac9d4fdf7fcf7a67c03e1bb 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.0.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.0.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb index 606f9a318dfced64f050b5906fef21decb35f4b3..e385b6fbbeb56790ffad0337a89205a3c750ee37 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb index 2dbc7fa9badfd3b7a3a5e91d4e5d90237fea708f..94e497613d3b836f478c08a6851ebc2c02dd489a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.1.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.1' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb index eaadea3b41b4a014f04102daab1956a521fae5b8..ce2ab0cb59dc5dab8d6eada6aee79767b892ce62 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.1.2.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.1.2' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb index d84e16eaba5b6fd5d164df6212fb9b205189e36c..3ee48d069a5ecbb5fe6c345bab693fc6572547e7 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.0.eb @@ -3,7 +3,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' version = '3.2.0' -homepage = 'http://hpcugent.github.com/easybuild/' +homepage = 'https://easybuilders.github.io/easybuild' description = """EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..176c9217f3efa5db73fda0ddd05b3c51a1e7b0a0 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.2.1.eb @@ -0,0 +1,38 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '3.2.1' + +homepage = 'https://easybuilders.github.io/easybuild' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + # vsc-install + 'https://pypi.python.org/packages/82/ec/19d85d2bb91b562195d00db9ac82d7529904e7eabc0597720966bf74714f/', + # vsc-base + 'https://pypi.python.org/packages/f7/66/1ff7ecc4a93ba37e063f5bfbe395e95a547b1dec73b017c2724f4475a958/', + # easybuild-framework + 'https://pypi.python.org/packages/77/a2/34beda6176a1c85e99861f6a5e881c3a5c67e68e1edc50258a7d941195e8/', + # easybuild-easyblocks + 'https://pypi.python.org/packages/3d/02/a5d239cbe7dfaecf712edc4aa53192239db174505e81d4c793e20abd96b6/', + # easybuild-easyconfigs + 'https://pypi.python.org/packages/ac/ae/185b876b02b2f2310fe52bb41539d23a00e421e5b19c246779e4b2be03a8/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-install-0.10.26.tar.gz', + 'vsc-base-2.5.8.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f1753bce3f185aa4a700d5b2385f6b1bf818ccc --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.0.eb @@ -0,0 +1,38 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '3.3.0' + +homepage = 'https://easybuilders.github.io/easybuild' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + # vsc-install + 'https://pypi.python.org/packages/82/ec/19d85d2bb91b562195d00db9ac82d7529904e7eabc0597720966bf74714f/', + # vsc-base + 'https://pypi.python.org/packages/f7/66/1ff7ecc4a93ba37e063f5bfbe395e95a547b1dec73b017c2724f4475a958/', + # easybuild-framework + 'https://pypi.python.org/packages/b6/8b/383298ddd7718b8455b26719d39c686105ccdba55b66bdd0971ac0a69d70/', + # easybuild-easyblocks + 'https://pypi.python.org/packages/1d/3d/53ea1c02d7a77fcc6c1aa6620a8a6f2e45d3fddf9657919b749c4834b4fb/', + # easybuild-easyconfigs + 'https://pypi.python.org/packages/c8/c0/829c6ddd864f9980c09eb5acec7dc8ece747831f6f3b76852f2796a563fb/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-install-0.10.26.tar.gz', + 'vsc-base-2.5.8.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..38ca592d16df32de70f3a26237cf1f52ff75edd9 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-3.3.1.eb @@ -0,0 +1,38 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '3.3.1' + +homepage = 'https://easybuilders.github.io/easybuild' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + # vsc-install + 'https://pypi.python.org/packages/82/ec/19d85d2bb91b562195d00db9ac82d7529904e7eabc0597720966bf74714f/', + # vsc-base + 'https://pypi.python.org/packages/f7/66/1ff7ecc4a93ba37e063f5bfbe395e95a547b1dec73b017c2724f4475a958/', + # easybuild-framework + 'https://pypi.python.org/packages/5b/1e/26bcb7c4407a68b22bd545014bf5536c4f3c4b196bc0467b008d848008da', + # easybuild-easyblocks + 'https://pypi.python.org/packages/7c/03/0ca88b299508689eea650652f5188f9f03d8fc3001670ad37885e71b6e4f', + # easybuild-easyconfigs + 'https://pypi.python.org/packages/57/d0/d5683dbb6aca7dfd2f39f38be9f11252177012ef894dfdf2b19e70eddf44', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-install-0.10.26.tar.gz', + 'vsc-base-2.5.8.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb index f64ca17dc1cb76865df99fd6134328879eafb2eb..03e5ae314205c2391d3cac76f1324414c6f70714 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb index c2159638f240dd527660d01ad202029b9f019ed4..29c0f0a24e11a38322306fba1fcea400b0e9d896 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb index ad65bdfc92e9490b91fbb3e0201d58bb57d87cb0..52df5baa8d4e1a7a91b21d2d6078de3187076553 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb index 0a2271f0359a8924a7e75f1d9c3d9902e1c29311..0fec576ce6868ff3ed3fa9561b133a2820c7764c 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb index 0dd48816d2d2d9f930bb212cc97e7d151029a16d..70ef04ea87cf47db1c3643ec83437816711015b6 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb index 9e7b9cf60de7cdcb32e742410320195b21078ffb..7831be18f55bade38e4f3cebde1af5faf46cd224 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb index 7cbefdf8ab1fe2181989e23d49163a1690a71875..1e4a8f49a5813fda86fc2d3ba3a143b5a8a9fedd 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb index 81edc7d68bfa13d788db47f922fcbb14c5409382..f1219c065adfcf834e483eabbd19ab509e6bcfb8 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb index b3c186165b6652facb329316b158ec46e1b07955..16de65cee4742634bcf7da254ec63b9c0c7e60d1 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb index 59832233f0ee52f020a433bcaed6c9938dc81378..2ac82d539afcd92264a1fdc69a0a35f2f60e8746 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.6-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.9-foss-2015a.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.9-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..308bb395d6ea9522c6d321ee19abe07e781d3d52 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.9-foss-2015a.eb @@ -0,0 +1,13 @@ +name = 'Eigen' +version = '3.2.9' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..50d812747508910d277162f4c930d006a65143cf --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4-GCCcore-6.4.0.eb @@ -0,0 +1,17 @@ +name = 'Eigen' +version = '3.3.4' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' + +description = """ + Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] +checksums = ['dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..b82e85a0ae7e83340e0c10da3cdeaff7f8fe7243 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.3.4.eb @@ -0,0 +1,18 @@ +name = 'Eigen' +version = '3.3.4' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' + +description = """ + Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms. +""" + +# only includes header files, so no need for a non-dummy toolchain +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] +checksums = ['dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/EricScript/EricScript-0.5.5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/e/EricScript/EricScript-0.5.5-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..222274d259a6e4037901f453e012a1ec27154f2a --- /dev/null +++ b/easybuild/easyconfigs/e/EricScript/EricScript-0.5.5-intel-2017a-R-3.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'Tarball' + +name = 'EricScript' +version = '0.5.5' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://sites.google.com/site/bioericscript/home' +description = "EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('ada', '2.0-5', versionsuffix), + ('BWA', '0.7.15'), + ('SAMtools', '1.4.1'), + ('BEDTools', '2.26.0'), + ('seqtk', '1.2'), + ('BLAT', '3.5'), +] + +postinstallcmds = ["chmod a+rx %(installdir)s/ericscript.pl"] + +sanity_check_paths = { + 'files': ['ericscript.pl', 'LICENSE', 'README'], + 'dirs': ['lib'], +} + +modextrapaths = {'PATH': ''} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index 1e6432cb6d75daee29c3aa75e5894f6d0f5820dc..32b4b7697d006938a06ed7e7aaa116c07bdee5fc 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb index 6a9d4b53984092800ab6df5bd6779171ee2a6c86..84c6277a5a02a5834053f6c9166e7f1136559871 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb index 7f862017dd052b049dff9967f0be8edb84b941b6..db59680faabdbb3df94d3125aaa184f63ef436af 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb index 899422100cb3fc364bab7683de862f9565308a43..19e0931e0007f884238689844b7927e90e33cc74 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb index 524d427c0e606daea1e67f2e151f1b13ed62fc64..89c9d6f1ca88cfb3adef41598e46638c07e29b50 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb index 0cfe11f239af086b8b24e92e4ca93c329bb0dfcc..9d263392d3d929c2d64aa5ed17ff427593d33392 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb index f186cddd62fc655bd7a79f1c1554ce9af52e4452..afcb38952d28e0630cd4cb76d9f81d901190d8fa 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.4.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb b/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb index 4e0f98d635d634fa4cf2aa3a64bd778789ccea6f..a37c5f2e77be3f235a67f2a690b35f44b481881c 100644 --- a/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb +++ b/easybuild/easyconfigs/e/Extrae/Extrae-3.0.1-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb index 037dcd81856fd8d14e1c872bcb87c2e6cf290ed7..94c1eb603b9a06ce3f36a7805e548fa8567e226f 100644 --- a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016a.eb b/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016a.eb index 498218ede9550cc6a2c890f9fbb56f176c073dd3..26cdd728d094af8034836f4b497928af4ff6834b 100644 --- a/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016a.eb +++ b/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016a.eb @@ -32,7 +32,7 @@ dependencies = [ ] files_to_copy = [([ - 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', + 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', 'sam-stats', 'varcall', 'randomFQ', 'alc', 'determine-phred'], 'bin' )] diff --git a/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016b.eb b/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016b.eb index 5bd575648e76deebba8dc95f1f7cbddd3c3bea1c..8409d2b2d32799411910defd2be62f6f95fd87af 100644 --- a/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016b.eb +++ b/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-foss-2016b.eb @@ -32,7 +32,7 @@ dependencies = [ ] files_to_copy = [([ - 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', + 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', 'sam-stats', 'varcall', 'randomFQ', 'alc', 'determine-phred'], 'bin' )] diff --git a/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-intel-2016b.eb b/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-intel-2016b.eb index a1c32a3e346b6579d7d7869c949b110e914481d0..1763f70eb38c073c2a24dbccef56c94edca05a1a 100644 --- a/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-intel-2016b.eb +++ b/easybuild/easyconfigs/e/ea-utils/ea-utils-1.04.807-intel-2016b.eb @@ -34,7 +34,7 @@ dependencies = [ ] files_to_copy = [([ - 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', + 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', 'sam-stats', 'varcall', 'randomFQ', 'alc', 'determine-phred'], 'bin' )] diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb index b0dc02f6dd5cb72be74e4a74349e5aaddae51228..2c5d7fe41f3adb29f9bd391cf38731c0dbce1fc6 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb @@ -8,8 +8,12 @@ description = """GNU ed is a line-oriented text editor.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} +source_urls = [ + 'https://launchpad.net/ed/main/%(version)s/+download/', + GNU_SOURCE, +] sources = [SOURCE_TAR_GZ] -source_urls = [GNU_SOURCE] +checksums = ['d5b372cfadf073001823772272fceac2cfa87552c5cd5a8efc1c8aae61f45a88'] sanity_check_paths = { 'files': ['bin/ed'], diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb index 48f5d0b7b4e0539a6752834c448adbf56a133158..7b11af7dc6dc697319ab9ddbd1e562874fef8e45 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb @@ -8,8 +8,12 @@ description = """GNU ed is a line-oriented text editor.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} +source_urls = [ + 'https://launchpad.net/ed/main/%(version)s/+download/', + GNU_SOURCE, +] sources = [SOURCE_TAR_GZ] -source_urls = ['http://ftpmirror.gnu.org/%(name)s/'] +checksums = ['d5b372cfadf073001823772272fceac2cfa87552c5cd5a8efc1c8aae61f45a88'] sanity_check_paths = { 'files': ['bin/ed'], diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.1.5-foss-2015a.eb b/easybuild/easyconfigs/e/eudev/eudev-3.1.5-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..6fa9d11cb4704ee3926b6d659b99d87520a6f43f --- /dev/null +++ b/easybuild/easyconfigs/e/eudev/eudev-3.1.5-foss-2015a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'eudev' +version = '3.1.5' + +homepage = 'https://wiki.gentoo.org/wiki/Project:Eudev' +description = """eudev is a fork of systemd-udev with the goal of obtaining + better compatibility with existing software such as + OpenRC and Upstart, older kernels, various toolchains + and anything else required by users and various distributions.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://dev.gentoo.org/~blueness/%(name)s/'] +patches = ['%(name)s-3.1.2_pre-2.6.34_kernel.patch'] + +builddependencies = [ + ('gperf', '3.0.4'), +] + +osdependencies = [('kernel-headers', 'linux-libc-dev')] + +configopts = '--disable-blkid --disable-selinux --disable-gudev --disable-manpages ' +runtest = 'check' + +sanity_check_paths = { + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], + 'dirs': [], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/e/expat/expat-2.2.0-GCCcore-5.4.0.eb b/easybuild/easyconfigs/e/expat/expat-2.2.0-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..eeff8e600b1f4e0a3509e2abb66c10e26096e2ca --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.2.0-GCCcore-5.4.0.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.2.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +builddependencies = [('binutils', '2.26', '', True)] + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.2.0-gimkl-2017a.eb b/easybuild/easyconfigs/e/expat/expat-2.2.0-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..555f4a3da3d5efdb485ce923f288b2d142650f01 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.2.0-gimkl-2017a.eb @@ -0,0 +1,16 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.2.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..87f8150c28650cead722df2ce9aab53972ea8c00 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.2.1-GCCcore-6.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.2.1' + +homepage = 'http://expat.sourceforge.net/' + +description = """ + Expat is an XML parser library written in C. It is a stream-oriented parser + in which an application registers handlers for things the parser might find + in the XML document (like start tags) +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['1868cadae4c82a018e361e2b2091de103cd820aaacb0d6cfa49bd2cd83978885'] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9ecdd700fb2a52cd9953737710361ac29121d677 --- /dev/null +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-foss-2016b.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'MakeCp' + +name = "FASTA" +version = "36.3.5e" + +homepage = 'http://fasta.bioch.virginia.edu' +description = """The FASTA programs find regions of local or global (new) similarity between +protein or DNA sequences, either by searching Protein or DNA databases, or by identifying +local duplications within a sequence.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://faculty.virginia.edu/wrpearson/fasta/fasta36'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['1c76727b3c61ca36bd19ce4da70c02fe'] + +buildopts = '-C ./src -f ../make/Makefile.linux_sse2 all' + +files_to_copy = ["bin", "conf", "data", "doc", "FASTA_LIST", "misc", "README", "seq", "sql", "test"] + +sanity_check_paths = { + 'files': ["FASTA_LIST", "README"] + ['bin/%s' % x for x in ['lav2svg', 'lav2ps', 'map_db']] + + ['bin/%s%%(version_major)s' % x for x in ['fasta', 'fastm', 'fastx', 'ggsearch', 'lalign', 'tfastf', + 'tfasts', 'tfasty', 'fastf', 'fasts', 'fasty', 'glsearch', + 'ssearch', 'tfastm', 'tfastx']], + 'dirs': ["conf", "data", "doc", "misc", "seq", "sql", "test"] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb index cb997fa5934efb8f4f2281371552b8ec206a4a47..7738a65d8c58ab6f77338f3b58a982d8d5bb8069 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb index 31a89c008557728575918bb48ee66e23da553106..723f27db16762cd1c4c356eb8f46b70591babdd9 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou , diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index 3b0992eef6445201ad66f140bd27c6c6a60bdf6c..0c2b26660e2266b5da6f2aca5d2bfbf4530df59c 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 1f15e3521420f7dcc538dc480591d7ad6ff7717c..8736954b9760efbc4bf2dc7dd69138c17ec0a602 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb index 000e1a89b77047bae4cafdda81e85262718734db..6b26b56f8f542fdc46eed71df1adc7bbc4a0f3a9 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb index a69a7b9e2fd4a380b4fce2c047576d8ba0e2eec7..0b62a9167cef135d9ad9872580d5170df33c00d6 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb index ef4b99cd73049f0d85929e161e63245d1cb32c4e..c8f2a2e194922405f850352cf6deed992009c4e2 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index 1b0419e8b85477b7e540ff61c56b7f005cc125d9..2455f164d6c26b536fd8dfc0b51ff887b57e1d30 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb index 88eedbe24881816c0b8e6ff721634231ed6fe147..bfe69329672326b2a933d54a444d1266d757201b 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb b/easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..00c8e74036e49df7f3747c96f4627231a50e7ebd --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-6.5.3-intel-2017a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'FDS' +version = '6.5.3' + +homepage = 'https://pages.nist.gov/fds-smv/' +description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, + with an emphasis on smoke and heat transport from fires.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/firemodels/fds/archive/'] +sources = ['FDS%(version)s.tar.gz'] +checksums = ['e15173651512575967e3769f6730425e616a3deb0291475564db729cf526be13'] + +unpack_options = '--strip-components=1' + +start_dir = 'Build' + +# just run make in the install dir +skipsteps = ['configure', 'install'] +buildininstalldir = True + +target = 'impi_intel_linux_64' +buildopts = '%s FFLAGS="$FFLAGS -fpp" FCOMPL="$FC" obj=fds' % target + +modextrapaths = {'PATH': 'Build'} + +sanity_check_paths = { + 'files': ['Build/fds'], + 'dirs': [], +} + +sanity_check_commands = [("fds 2>&1 | grep 'MPI Enabled;'", '')] + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb b/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb index da99f9d5b8eaa97f82ef9d0c9732d003d60d8a29..d03b85f906a7f16c10313f808f00d945301f0760 100644 --- a/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/f/FFLAS-FFPACK/FFLAS-FFPACK-2.2.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipe; see https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipe; see https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2016 Riccardo Murri # Authors:: Riccardo Murri diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-intel-2016b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-intel-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..77bea4672e7d2c3a90496357766859f717cf5d59 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-intel-2016b.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '2.1.5' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +patches = ['FFTW-%(version)s_fix-configure-Fortran-linking.patch'] + +common_configopts = "--enable-shared --enable-type-prefix --enable-threads --with-pic" + +configopts = [ + common_configopts + " --enable-float --enable-mpi", + common_configopts + " --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['include/%sfftw%s.h' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + + ['lib/lib%sfftw%s.a' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + + ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] + for y in ['', '_mpi', '_threads']], + 'dirs': [], +} +# make sure *_f77 symbols are there (patch is required to avoid --disable-fortran being used automatically) +sanity_check_commands = ["nm %(installdir)s/lib/libdfftw.a | grep _f77"] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-intel-2017a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f08bc07dde0423f100cf76de2defa8a18c1812ac --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-intel-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '2.1.5' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +patches = ['FFTW-%(version)s_fix-configure-Fortran-linking.patch'] + +common_configopts = "--enable-shared --enable-type-prefix --enable-threads --with-pic" + +configopts = [ + common_configopts + " --enable-float --enable-mpi", + common_configopts + " --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['include/%sfftw%s.h' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + + ['lib/lib%sfftw%s.a' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + + ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] + for y in ['', '_mpi', '_threads']], + 'dirs': [], +} +# make sure *_f77 symbols are there (patch is required to avoid --disable-fortran being used automatically) +sanity_check_commands = ["nm %(installdir)s/lib/libdfftw.a | grep _f77"] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5_fix-configure-Fortran-linking.patch b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5_fix-configure-Fortran-linking.patch new file mode 100644 index 0000000000000000000000000000000000000000..6dbbf6e91ae389ea34a21d006c2954e69a91e35d --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5_fix-configure-Fortran-linking.patch @@ -0,0 +1,16 @@ +remove double quotes from verbose output of Fortran compiler +required to avoid that --disable-fortran gets used automatically, resulting in missing *_f77 symbols +author: Kenneth Hoste (HPC-UGent) +diff --git a/fftw-2.1.5.orig/configure b/fftw-2.1.5/configure +index f5bab28..ba60d87 100755 +--- a/fftw-2.1.5.orig/configure ++++ b/fftw-2.1.5/configure +@@ -8612,7 +8612,7 @@ _ACEOF + ac_save_FFLAGS=$FFLAGS + FFLAGS="$FFLAGS $ac_cv_prog_f77_v" + (eval echo $as_me:8614: \"$ac_link\") >&5 +-ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | grep -v 'Driving:'` ++ac_f77_v_output=`eval $ac_link 5>&1 2>&1 | sed 's/"//g' | grep -v 'Driving:'` + echo "$ac_f77_v_output" >&5 + FFLAGS=$ac_save_FFLAGS + diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015b-PFFT-20150905.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015b-PFFT-20150905.eb index d127590485df29af5932806de6a21ba89a5d71e8..1f513106f62a9fe715d17974c3e9a94166830ba3 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015b-PFFT-20150905.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015b-PFFT-20150905.eb @@ -21,7 +21,7 @@ builddependencies = [ ] # the patch changed a Makefile.am, so we need to call autoreconf -preconfigopts = "autoreconf --verbose --symlink --force && " +preconfigopts = "autoreconf --verbose --symlink --force && " common_configopts = "--enable-threads --enable-openmp --with-pic" diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.2.4-gimkl-2017a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.2.4-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..207033968334e9dcf8d147fba44875783a7def2b --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.2.4-gimkl-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '3.2.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.12.02', '', True), + ('x264', '20170406'), + ('X11', '20170129'), # pulls in bzip2 and zlib +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in [SHLIB_EXT, 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.1-foss-2016b.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.1-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..374f64671c2d0d2d3b1868dd8cec1c3e771c700a --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3.1-foss-2016b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '3.3.1' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.12.02'), + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('x264', '20160614'), + ('x265', '2.4'), + ('LAME', '3.99.5'), + ('X11', '20160819'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264 --enable-libx265 --enable-libmp3lame' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in [SHLIB_EXT, 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb b/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb index 76be36ffc6f0dcfa6d1288cd42bd333a52d99e7c..81cb92955ed30198daee6d651446ff982b0fcb38 100644 --- a/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb +++ b/easybuild/easyconfigs/f/FLAC/FLAC-1.3.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.4-intel-2017a.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.4-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..95391e1838a64a7b9baaa1e0aff45c7bd024a637 --- /dev/null +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.4-intel-2017a.eb @@ -0,0 +1,36 @@ +# +# author: Dina Mahmoud Ibrahim ( Cairo University ) +# +easyblock = 'ConfigureMake' + +name = 'FLTK' +version = '1.3.4' + +homepage = 'http://www.fltk.org' +description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, + and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL + and its built-in GLUT emulation.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = ['%(namelower)s-%(version)s-source.tar.gz'] +source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] + +configopts = '--enable-shared --enable-threads --enable-xft' + +dependencies = [ + ('Mesa', '17.0.2'), + ('libGLU', '9.0.0'), + ('libpng', '1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('xprop', '1.2.2'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['bin/fltk-config', 'bin/fluid', 'lib/libfltk.a', 'lib/libfltk.%s' % SHLIB_EXT], + 'dirs': ['lib'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FLUENT/FLUENT-18.1.eb b/easybuild/easyconfigs/f/FLUENT/FLUENT-18.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..adedc0b4440c230710e172a06acd8f7428e94695 --- /dev/null +++ b/easybuild/easyconfigs/f/FLUENT/FLUENT-18.1.eb @@ -0,0 +1,14 @@ +name = 'FLUENT' +version = '18.1' + +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/Fluid+Dynamics+Products/ANSYS+Fluent' +description = """ANSYS FLUENT software contains the broad physical modeling capabilities needed +to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from +air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, +from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['FLUIDSTRUCTURES_%(version_major)s%(version_minor)s_LINX64.tar'] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb index 0f49be8035137c41002dcdfe3c939e5466d98aa7..7e45a7cbdc6fd63e63f7c466896c409692f72f9c 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA, Swiss Institute of Bioinformatics # Authors:: Fotis Georgatos , Pablo Escobar Lopez diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb index 27159a0ac870d1376b9370e506df4e2ccb620521..c0b720f5c0b504633cdab72a29d06f547c597118 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA, Swiss Institute of Bioinformatics # Authors:: Fotis Georgatos , Pablo Escobar Lopez diff --git a/easybuild/easyconfigs/f/FSL/FSL-5.0.10-intel-2017a.eb b/easybuild/easyconfigs/f/FSL/FSL-5.0.10-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ba9750bf316cd6734a36dacd59cf7ce966998c8 --- /dev/null +++ b/easybuild/easyconfigs/f/FSL/FSL-5.0.10-intel-2017a.eb @@ -0,0 +1,33 @@ +name = 'FSL' +version = '5.0.10' + +homepage = 'http://www.fmrib.ox.ac.uk/fsl/' +description = """FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ["http://www.fmrib.ox.ac.uk/fsldownloads/"] +sources = ['%(namelower)s-%(version)s-sources.tar.gz'] + +patches = [ + 'FSL-%(version)s_makefile_fixes.patch', + 'FSL-5.0.9_missing_lib.patch', + 'FSL_icc_nan-inf_fix.patch', + 'FSL-%(version)s_build_extras.patch', +] + +dependencies = [ + ('Boost', '1.63.0', '-Python-2.7.13'), + ('libgd', '2.2.4'), + ('libxml2', '2.9.4'), + ('SQLite', '3.17.0'), + ('libpng', '1.6.29'), + ('Tk', '8.6.6'), + ('NLopt', '2.4.2'), + ('freeglut', '3.0.0'), + ('expat', '2.2.0'), + ('zlib', '1.2.11'), + ('VTK', '7.1.1', '-Python-2.7.13'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FSL/FSL-5.0.10_build_extras.patch b/easybuild/easyconfigs/f/FSL/FSL-5.0.10_build_extras.patch new file mode 100644 index 0000000000000000000000000000000000000000..15bc9a7922d41d319c5185aac3cae23e79652212 --- /dev/null +++ b/easybuild/easyconfigs/f/FSL/FSL-5.0.10_build_extras.patch @@ -0,0 +1,14 @@ +# only build thing we don't provide with EasyBuild +# Ward Poelmans +diff -ur fsl/extras/build fsl.new/extras/build +--- fsl/extras/build 2016-11-15 15:30:21.000000000 +0100 ++++ fsl.new/extras/build 2017-05-19 15:21:07.321630239 +0200 +@@ -106,6 +106,8 @@ + fi + PROJECTS="${PROJECTS} libgd libgdc libprob libcprob newmat cprob newran fftw" + PROJECTS="${PROJECTS} boost libxml2-2.9.2 libxml++-2.34.0 libsqlite libnlopt ../include/armawrap/dummy_newmat" ++# For EasyBuild: ++PROJECTS="libprob libcprob newmat cprob newran libxml++-2.34.0 libgdc" + for projname in $PROJECTS; do + if [ -d $FSLESRCDIR/$projname ] ; then + buildIt $FSLESRCDIR $projname 1 diff --git a/easybuild/easyconfigs/f/FSL/FSL-5.0.10_makefile_fixes.patch b/easybuild/easyconfigs/f/FSL/FSL-5.0.10_makefile_fixes.patch new file mode 100644 index 0000000000000000000000000000000000000000..8801e205ce36dcaad13c9783515007d422d0816e --- /dev/null +++ b/easybuild/easyconfigs/f/FSL/FSL-5.0.10_makefile_fixes.patch @@ -0,0 +1,256 @@ +# This fixes the build system of FSL. It now (mostly) uses EB. +# Ward Poelmans +diff -ur fsl.orig/config/common/vars.mk fsl/config/common/vars.mk +--- fsl.orig/config/common/vars.mk 2016-05-24 17:44:11.000000000 +0200 ++++ fsl/config/common/vars.mk 2017-05-24 09:38:05.912369589 +0200 +@@ -24,14 +24,14 @@ + USRCFLAGS = + USRCXXFLAGS = + +-LDFLAGS = ${ARCHLDFLAGS} ${USRLDFLAGS} -L. -L${DEVLIBDIR} -L${LIBDIR} ++LDFLAGS = ${EBVARLDFLAGS} ${ARCHLDFLAGS} ${USRLDFLAGS} -L. -L${DEVLIBDIR} -L${LIBDIR} + +-AccumulatedIncFlags = -I${INC_BOOST} ${USRINCFLAGS} -I. -I${DEVINCDIR} -I${INCDIR} ++AccumulatedIncFlags = ${EBVARCPPFLAGS} -I${INC_BOOST} ${USRINCFLAGS} -I. -I${DEVINCDIR} -I${INCDIR} + +-CFLAGS = ${ANSI_FLAGS} ${ANSI_CFLAGS} ${DBGFLAGS} ${USEDCSTATICFLAGS} ${USRCFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \ ++CFLAGS = ${EBVARCFLAGS} ${ANSI_FLAGS} ${ANSI_CFLAGS} ${DBGFLAGS} ${USEDCSTATICFLAGS} ${USRCFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \ + ${AccumulatedIncFlags} + +-CXXFLAGS = ${ANSI_FLAGS} ${ANSI_CXXFLAGS} ${DBGFLAGS} ${USEDCXXSTATICFLAGS} ${USRCXXFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \ ++CXXFLAGS = ${EBVARCXXFLAGS} ${ANSI_FLAGS} ${ANSI_CXXFLAGS} ${DBGFLAGS} ${USEDCXXSTATICFLAGS} ${USRCXXFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \ + ${AccumulatedIncFlags} + + HFILES = *.h +diff -ur fsl.orig/config/generic/systemvars.mk fsl/config/generic/systemvars.mk +--- fsl.orig/config/generic/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/generic/systemvars.mk 2017-05-24 09:38:05.912369589 +0200 +@@ -16,8 +16,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +@@ -25,7 +25,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} + MACHDBGFLAGS = + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ur fsl.orig/config/linux_64-gcc4.8/externallibs.mk fsl/config/linux_64-gcc4.8/externallibs.mk +--- fsl.orig/config/linux_64-gcc4.8/externallibs.mk 2017-02-18 13:20:05.000000000 +0100 ++++ fsl/config/linux_64-gcc4.8/externallibs.mk 2017-05-24 09:45:04.058907856 +0200 +@@ -15,7 +15,7 @@ + INC_GDC = ${FSLEXTINC}/libgdc + + # LIBXML2 library +-INC_XML2 = ${FSLEXTINC}/libxml2 ++INC_XML2 = ${EBROOTLIBXML2} + + # LIBXML++ library + INC_XML++ = ${FSLEXTINC}/libxml++-2.6 +@@ -49,12 +49,12 @@ + INC_ZLIB = /usr/include + + # BOOST library +-BOOSTDIR = ${FSLEXTINC}/boost +-LIB_BOOST = ${BOOSTDIR} +-INC_BOOST = ${BOOSTDIR} ++BOOSTDIR = ${EBROOTBOOST} ++LIB_BOOST = ${BOOSTDIR}/lib ++INC_BOOST = ${BOOSTDIR}/include + + # QT library +-QTDIR = /usr/lib/qt3 ++QTDIR = ${EBROOTQT} + LIB_QT = ${QTDIR}/lib + INC_QT = ${QTDIR}/include + +@@ -64,10 +64,10 @@ + INC_QWT = ${QWTDIR}/include + + # FFTW3 library +-LIB_FFTW3 = ${FSLEXTLIB} +-INC_FFTW3 = ${FSLEXTINC}/fftw3 +- +-# VTK library +-VTKDIR_INC = /home/fs0/cowboy/var/caper_linux_64-gcc4.4/VTK7/include/vtk-7.0 +-VTKDIR_LIB = /home/fs0/cowboy/var/caper_linux_64-gcc4.4/VTK7/lib +-VTKSUFFIX = -7.0 +\ No newline at end of file ++LIB_FFTW3 = ${EBVARFFTW_LIB_DIR} ++INC_FFTW3 = ${EBVARFFTW_INC_DIR} ++ ++ # VTK library ++VTKDIR_INC = ${EBROOTVTK}/include/vtk-`echo ${EBVERSIONVTK} | cut -f1-2 -d.` ++VTKDIR_LIB = ${EBROOTVTK}/lib ++VTKSUFFIX = -`echo ${EBVERSIONVTK} | cut -f1-2 -d.` +diff -ur fsl.orig/config/linux_64-gcc4.8/systemvars.mk fsl/config/linux_64-gcc4.8/systemvars.mk +--- fsl.orig/config/linux_64-gcc4.8/systemvars.mk 2017-02-18 13:20:05.000000000 +0100 ++++ fsl/config/linux_64-gcc4.8/systemvars.mk 2017-05-24 09:38:05.912369589 +0200 +@@ -8,7 +8,7 @@ + CP = /bin/cp + MV = /bin/mv + INSTALL = install -p +-TCLSH = ${FSLDIR}/bin/fsltclsh ++TCLSH = tclsh + RANLIB = echo + + FSLML = ${FSLDIR}/bin/fslml +@@ -18,9 +18,9 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ +-CXX11 = scl enable devtoolset-2 -- c++ ++CC := ${CC} ++CXX := ${CXX} ++CXX11 = ${CXX} -std=c++11 + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +@@ -30,16 +30,16 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -g -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${OPTFLAGS} ${ARCHFLAGS} + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn + ANSI_FLAGS = ${GNU_ANSI_FLAGS} + + # CUDA development environment +-CUDA_INSTALLATION = /opt/cuda-7.5 ++CUDA_INSTALLATION = ${EBROOTCUDA} + GENCODE_FLAGS = $(shell ${FSLDIR}/config/common/supportedGencodes.sh ${CUDA_INSTALLATION}) + LIB_CUDA = ${CUDA_INSTALLATION}/lib64 + INC_CUDA = ${CUDA_INSTALLATION}/include + NVCC = ${CUDA_INSTALLATION}/bin/nvcc +-NVCC11=scl enable devtoolset-2 -- ${CUDA_INSTALLATION}/bin/nvcc ++NVCC11= ${CUDA_INSTALLATION}/bin/nvcc +diff -ur fsl.orig/etc/fslconf/fsl.csh fsl/etc/fslconf/fsl.csh +--- fsl.orig/etc/fslconf/fsl.csh 2014-05-19 16:54:10.000000000 +0200 ++++ fsl/etc/fslconf/fsl.csh 2017-05-24 09:38:05.912369589 +0200 +@@ -25,7 +25,7 @@ + # The following variables specify paths for programs and can be changed + # or replaced by different programs ( e.g. FSLDISPLAY=open for MacOSX) + +-setenv FSLTCLSH $FSLDIR/bin/fsltclsh ++setenv FSLTCLSH tclsh +-setenv FSLWISH $FSLDIR/bin/fslwish ++setenv FSLWISH wish + + # The following variables are used for running code in parallel across +diff -ur fsl.orig/etc/fslconf/fsl-devel.sh fsl/etc/fslconf/fsl-devel.sh +--- fsl.orig/etc/fslconf/fsl-devel.sh 2014-05-19 16:54:10.000000000 +0200 ++++ fsl/etc/fslconf/fsl-devel.sh 2017-05-24 09:38:05.912369589 +0200 +@@ -26,7 +26,7 @@ + # The following variables specify paths for programs and can be changed + # or replaced by different programs ( e.g. FSLDISPLAY=open for MacOSX) + +-FSLTCLSH=$FSLDIR/bin/fsltclsh ++FSLTCLSH=tclsh +-FSLWISH=$FSLDIR/bin/fslwish ++FSLWISH=wish + + export FSLTCLSH FSLWISH +diff -ur fsl.orig/etc/fslconf/fsl.sh fsl/etc/fslconf/fsl.sh +--- fsl.orig/etc/fslconf/fsl.sh 2014-05-19 16:54:10.000000000 +0200 ++++ fsl/etc/fslconf/fsl.sh 2017-05-24 09:38:05.912369589 +0200 +@@ -26,7 +26,7 @@ + # The following variables specify paths for programs and can be changed + # or replaced by different programs ( e.g. FSLDISPLAY=open for MacOSX) + +-FSLTCLSH=$FSLDIR/bin/fsltclsh ++FSLTCLSH=tclsh +-FSLWISH=$FSLDIR/bin/fslwish ++FSLWISH=wish + + export FSLTCLSH FSLWISH +diff -ur fsl.orig/extras/src/libxml++-2.34.0/libxml++/io/istreamparserinputbuffer.cc fsl/extras/src/libxml++-2.34.0/libxml++/io/istreamparserinputbuffer.cc +--- fsl.orig/extras/src/libxml++-2.34.0/libxml++/io/istreamparserinputbuffer.cc 2010-12-15 11:41:27.000000000 +0100 ++++ fsl/extras/src/libxml++-2.34.0/libxml++/io/istreamparserinputbuffer.cc 2017-05-24 09:38:05.913369598 +0200 +@@ -39,6 +39,6 @@ + + bool IStreamParserInputBuffer::do_close() + { +- return input_; ++ return static_cast(input_); + } + } +diff -ur fsl.orig/extras/src/libxml++-2.34.0/libxml++/io/ostreamoutputbuffer.cc fsl/extras/src/libxml++-2.34.0/libxml++/io/ostreamoutputbuffer.cc +--- fsl.orig/extras/src/libxml++-2.34.0/libxml++/io/ostreamoutputbuffer.cc 2010-12-15 11:41:27.000000000 +0100 ++++ fsl/extras/src/libxml++-2.34.0/libxml++/io/ostreamoutputbuffer.cc 2017-05-24 09:38:05.913369598 +0200 +@@ -29,13 +29,13 @@ + // here we rely on the ostream implicit conversion to boolean, to know if the stream can be used and/or if the write succeded. + if(output_) + output_.write(buffer, len); +- return output_; ++ return static_cast(output_); + } + + bool OStreamOutputBuffer::do_close() + { + if(output_) + output_.flush(); +- return output_; ++ return static_cast(output_); + } + } +diff -ur fsl.orig/src/film/Makefile fsl/src/film/Makefile +--- fsl.orig/src/film/Makefile 2017-04-20 17:01:43.000000000 +0200 ++++ fsl/src/film/Makefile 2017-05-24 09:38:05.913369598 +0200 +@@ -28,7 +28,7 @@ + ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} ftoz.o ${LIBS} + + film_gls:${OBJS} film_gls.o +- ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} film_gls.o ${LIBS} -l giftiio ++ ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} film_gls.o ${LIBS} -lgiftiio + + film_gls_res:${OBJS} film_gls_res.o + ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} film_gls_res.o ${LIBS} +diff -ur fsl.orig/src/libmeshutils/Makefile fsl/src/libmeshutils/Makefile +--- fsl.orig/src/libmeshutils/Makefile 2012-07-23 15:25:20.000000000 +0200 ++++ fsl/src/libmeshutils/Makefile 2017-05-24 09:38:05.913369598 +0200 +@@ -3,7 +3,7 @@ + + PROJNAME = meshUtils + +-LD_LIBRARY_PATH=${FSLDIR}/lib ++#LD_LIBRARY_PATH=${FSLDIR}/lib + + USRINCFLAGS = -I${INC_NEWMAT} -I${INC_ZLIB} -I${INC_PROB} -I${INC_BOOST} + USRLDFLAGS = -L${LIB_PROB} -L${LIB_NEWMAT} -L${LIB_ZLIB} +diff -ur fsl.orig/src/mist-clean/Makefile fsl/src/mist-clean/Makefile +--- fsl.orig/src/mist-clean/Makefile 2017-04-20 14:17:54.000000000 +0200 ++++ fsl/src/mist-clean/Makefile 2017-05-24 09:38:05.913369598 +0200 +@@ -2,15 +2,15 @@ + + NLOPT_INC = ${FSLEXTINC} + NLOPT_LIB = ${FSLEXTLIB} +-SQLITE_INC = ${FSLEXTINC}/libsqlite +-SQLITE_LIB = ${FSLEXTLIB} ++SQLITE_INC = ${EBROOTSQLITE}/include ++SQLITE_LIB = ${EBROOTSQLITE}/lib + + PROJNAME = mist + + XFILES = mist/mist + SCRIPTS = bin/mist_1_train bin/mist_2_fit bin/mist_FA_reg bin/mist_display bin/mist_mesh_utils + +-USRCXXFLAGS = -std=c++11 +# EB: needed to correctly (dynamically) link with the Boost log libs ++USRCXXFLAGS = -std=c++11 -DBOOST_LOG_DYN_LINK + USRINCFLAGS = -I${FSLDIR}/include/newimage -I${INC_NEWMAT} -I${INC_ZLIB} -I${INC_GDC} -I${INC_GD} -I${SQLITE_INC} -I${NLOPT_INC} -I${VTKDIR_INC} -Icommon + USRLDFLAGS = -L${LIB_NEWMAT} -L${LIB_ZLIB} -L${LIB_BOOST} -L${LIB_GDC} -L${LIB_GD} -L${NLOPT_LIB} -L${VTKDIR_LIB} + diff --git a/easybuild/easyconfigs/f/FUNWAVE-TVD/FUNWAVE-TVD-3.1-20170525-intel-2017a-no-storm.eb b/easybuild/easyconfigs/f/FUNWAVE-TVD/FUNWAVE-TVD-3.1-20170525-intel-2017a-no-storm.eb new file mode 100644 index 0000000000000000000000000000000000000000..4fd23347c3cbf55b5086df92d3ad7f29f904a4cb --- /dev/null +++ b/easybuild/easyconfigs/f/FUNWAVE-TVD/FUNWAVE-TVD-3.1-20170525-intel-2017a-no-storm.eb @@ -0,0 +1,31 @@ +easyblock = 'MakeCp' + +name = 'FUNWAVE-TVD' +version = '3.1-20170525' +commit = '814107a' +versionsuffix = '-no-storm' + +homepage = 'https://fengyanshi.github.io' +description = """FUNWAVE–TVD is the TVD version of the fully nonlinear Boussinesq wave model (FUNWAVE) + initially developed by Kirby et al.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/fengyanshi/FUNWAVE-TVD/archive/'] +sources = ['%s.tar.gz' % commit] + +start_dir = 'src' +parallel = 1 +buildopts = 'FC="$FC" FFLAGS="$FFLAGS -fpp" CPPFLAGS="-DINTEL -DMIXING -DMANNING -DVIS_KENNEDY" ' +# don't use -DSTORM +buildopts += "FLAG_16='' " + +files_to_copy = [(['mytvd'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/mytvd'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FUNWAVE-TVD/FUNWAVE-TVD-3.1-20170525-intel-2017a.eb b/easybuild/easyconfigs/f/FUNWAVE-TVD/FUNWAVE-TVD-3.1-20170525-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e8a2edef7d22e52cf97b8d6e91cf98bdc0bea8e5 --- /dev/null +++ b/easybuild/easyconfigs/f/FUNWAVE-TVD/FUNWAVE-TVD-3.1-20170525-intel-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'FUNWAVE-TVD' +version = '3.1-20170525' +commit = '814107a' + +homepage = 'https://fengyanshi.github.io' +description = """FUNWAVE–TVD is the TVD version of the fully nonlinear Boussinesq wave model (FUNWAVE) + initially developed by Kirby et al.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/fengyanshi/FUNWAVE-TVD/archive/'] +sources = ['%s.tar.gz' % commit] + +start_dir = 'src' +parallel = 1 +buildopts = 'FC="$FC" FFLAGS="$FFLAGS -fpp" CPPFLAGS="-DINTEL -DMIXING -DMANNING -DVIS_KENNEDY"' + +files_to_copy = [(['mytvd'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/mytvd'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FastME/FastME-2.1.5-foss-2016a.eb b/easybuild/easyconfigs/f/FastME/FastME-2.1.5-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e2f94ba178a2156211c08e1b9f1c39734039525b --- /dev/null +++ b/easybuild/easyconfigs/f/FastME/FastME-2.1.5-foss-2016a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'FastME' +version = '2.1.5' + +homepage = 'http://www.atgc-montpellier.fr/fastme/' +description = """FastME: a comprehensive, accurate and fast distance-based phylogeny inference program.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['http://www.atgc-montpellier.fr/download/sources/fastme/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/fastme'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb index 54414776644f3c32312b3620166bae190955a90d..602621d4aa451d736f49c220709ab3f3bafb6a59 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb b/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb index 1788c8a21afc5238123e27e9a84859d1767247b6..5f3c9ec3261d9d59c422b9c137a5eed7985d0049 100644 --- a/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb +++ b/easybuild/easyconfigs/f/Firefox/Firefox-44.0.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0015556cc19e8eaea2d990f9fbab235e2dcf895 --- /dev/null +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-GCCcore-6.4.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FreeXL' +version = '1.0.2' + +homepage = 'https://www.gaia-gis.it/fossil/freexl/index' + +description = """ + FreeXL is an open source library to extract valid data from within an + Excel (.xls) spreadsheet. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['b39a4814a0f53f5e09a9192c41e3e51bd658843f770399023a963eb064f6409d'] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +sanity_check_paths = { + 'files': ['lib/libfreexl.a'], + 'dirs': [] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb b/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb index 189d668ffd8668cb7aaaa4145a6bcea15cada575..f17bac6c215950e5bc91f336a9d02e4c135e79a8 100644 --- a/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb +++ b/easybuild/easyconfigs/f/fastPHASE/fastPHASE-1.4.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb b/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb index 5e8c01ab2dbfb4c8502c99a52cae1390dd2f85f2..fa8db6dbc22e71bf7e0bf6a62e699deb2800e38d 100644 --- a/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb +++ b/easybuild/easyconfigs/f/fastQValidator/fastQValidator-0.1.1a-20151214-goolf-1.7.20-aadc6f9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 4af4d1b872d6b68da6b11da276477c68e551f254..2f83116b7813590e71d0cdee399c47c9fa511cee 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb index bca5d6950841fc77e87458ed55016f32fd63784c..6d15ec35c69121bd0808b2c1f98c6be724b62452 100644 --- a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb b/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb index 61f8e29397861eb43ff3b2ec6d7e5ae2b49a7062..2cd84ee8fca927e677b75dcd9d7c467ba09d532b 100644 --- a/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb +++ b/easybuild/easyconfigs/f/file/file-5.25-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb b/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb index 51d81cd7106301839a7ecc73d64716473049861c..23357248bb0963f0b909d0973775dfe1bcdcf511 100644 --- a/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb +++ b/easybuild/easyconfigs/f/file/file-5.28-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb b/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb index cab481c6f4ef11452ec4a66c10ca29e321f308cc..92682e458a45b38d54deaf3f8ef460c3f239638a 100644 --- a/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb +++ b/easybuild/easyconfigs/f/file/file-5.30-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/f/findhap/findhap-4.eb b/easybuild/easyconfigs/f/findhap/findhap-4.eb index 7622374b6656aa31648192e71c9f523f892b6e8c..732e2ab92d225928672b731da3bed6b0ff1176f8 100644 --- a/easybuild/easyconfigs/f/findhap/findhap-4.eb +++ b/easybuild/easyconfigs/f/findhap/findhap-4.eb @@ -19,7 +19,7 @@ modextrapaths = { } modloadmsg = """ -Copy the following file to the directory from which you will be running the executable: +Copy the following file to the directory from which you will be running the executable: $EBROOTFINDHAP/findhap.options Other files in the $EBROOTFINDHAP directory are: diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index 6b2e49e08adf695648b9019ff2e298cf4c2bc856..56642aa7abad8005d0ac888277182c2b71bce846 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index ea5abc6927053a5eddc74a1e7767b518880c16c6..34097eba8656e5d12b61f3c99bc8bd8a1681beb5 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb index bd925b7e0f109e1a5aeb727fe38e81bb2fa26740..b9beaeb6db2bc20d51b5c8c95a399b4e79589f2d 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.3-gimkl-2017a.eb b/easybuild/easyconfigs/f/flex/flex-2.6.3-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..69335ad939bf87893e4985bc4919e66bc7233504 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.3-gimkl-2017a.eb @@ -0,0 +1,22 @@ +name = 'flex' +version = '2.6.3' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] + +checksums = ['a5f65570cd9107ec8a8ec88f17b31bb1'] + +dependencies = [('M4', '1.4.17')] +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.3.eb b/easybuild/easyconfigs/f/flex/flex-2.6.3.eb index 568be27f41f425e167fc980469afe6a5d558e254..f920a0f965dfdbdafe9b0256ba6288736e5a9bfb 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.6.3.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.6.3.eb @@ -2,21 +2,28 @@ name = 'flex' version = '2.6.3' homepage = 'http://flex.sourceforge.net/' -description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, - sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" toolchain = {'name': 'dummy', 'version': ''} toolchainopts = {'pic': True} -sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] checksums = ['a5f65570cd9107ec8a8ec88f17b31bb1'] -dependencies = [('M4', '1.4.18')] builddependencies = [ ('Bison', '3.0.4'), ('help2man', '1.47.4'), ] +dependencies = [ + ('M4', '1.4.18'), +] + moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.3.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c864ccaca1a0f6b7bb056ef635e96523245fd06c --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.3.0.eb @@ -0,0 +1,24 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] + +checksums = ['2882e3179748cc9f9c23ec593d6adc8d'] + +dependencies = [('M4', '1.4.18')] +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.27', '', True), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..37b5152374ad439b6d6627e973221915757a5f91 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-6.4.0.eb @@ -0,0 +1,30 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.28', '', True), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9df6e33418501c16d306835727de28fe028bf329 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4-GCCcore-7.2.0.eb @@ -0,0 +1,30 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.29', '', True), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.4.eb b/easybuild/easyconfigs/f/flex/flex-2.6.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..7ef4743c46b3dc2670f26422f19bea4bb987d0db --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.4.eb @@ -0,0 +1,28 @@ +name = 'flex' +version = '2.6.4' + +homepage = 'http://flex.sourceforge.net/' + +description = """ + Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns + in text. +""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/westes/flex/releases/download/v%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e87aae032bf07c26f85ac0ed3250998c37621d95f8bd748b31f15b33c45ee995'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('help2man', '1.47.4'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..39bdb77029753349ca9f56f0b47268fe7fb17684 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-5.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'fontconfig' +version = '2.12.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.2.0'), + ('freetype', '2.6.5'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.26', '', True)] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..985994992e1e6cb6e5fee1296dbfdde521a628c4 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'fontconfig' +version = '2.12.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' + +description = """ + Fontconfig is a library designed to provide system-wide font configuration, + customization and application access. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] +checksums = ['a9f42d03949f948a3a4f762287dbc16e53a927c91a07ee64207ebd90a9e5e292'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('expat', '2.2.1'), + ('freetype', '2.8'), +] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-gimkl-2017a.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a11636b93106981f33bb77d461fedf76c2a4811 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.12.1-gimkl-2017a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'fontconfig' +version = '2.12.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.2.0'), + ('freetype', '2.7.1'), +] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb index c4cf3f3ff7cfe9313c30f3c3289cf7c42473d926..35005a8b95de130e290d502d7436517901ccf533 100644 --- a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-3.0.0-intel-2017a.eb b/easybuild/easyconfigs/f/freeglut/freeglut-3.0.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..64f67b2563bccc2aead3a973419af4efb47f58d0 --- /dev/null +++ b/easybuild/easyconfigs/f/freeglut/freeglut-3.0.0-intel-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'CMakeMake' + +name = 'freeglut' +version = '3.0.0' + +homepage = 'http://freeglut.sourceforge.net/' +description = "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library." + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] + +builddependencies = [('CMake', '3.8.1')] + +dependencies = [ + ('X11', '20170314'), + ('libGLU', '9.0.0'), + ('Mesa', '17.0.2'), +] + +configopts = ' -DX11_X11_LIB="$EBROOTX11/lib/libX11.so" ' +configopts += ' -DX11_X11_INCLUDE_PATH="$EBROOTX11/include/X11" ' +configopts += ' -DX11_Xext_LIB="$EBROOTX11/lib/libXext.so" ' +configopts += ' -DX11_Xrandr_LIB="$EBROOTX11/lib/libXrandr.so" ' +configopts += ' -DX11_Xrandr_INCLUDE_PATH="$EBROOTX11/include/X11/extensions/" ' +configopts += ' -DX11_Xi_LIB="$EBROOTX11/lib/libXrandr.so" ' +configopts += ' -DX11_Xi_INCLUDE_PATH="$EBROOTX11/include/X11/extensions/" ' + +sanity_check_paths = { + 'files': [('lib/libglut.a', 'lib64/libglut.a'), ('lib/libglut.%s' % SHLIB_EXT, 'lib64/libglut.%s' % SHLIB_EXT)], + 'dirs': ['include/GL'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb index 7e51dd88f4568f6acb5c782e0544e8f0d5d4ed5b..e8bc65d782f37f59ff184fbcb1e4e32bd9bfac64 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb @@ -12,6 +12,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb index bcf6608413cb29275bc7583932ab2a363f63ee2c..7e75acce83380ab86c9061a4a1e04097fff4bae2 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb @@ -11,6 +11,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb index 916f1302f28c7c603da3feb5bb9b4411556122d8..dedbe863ab72e4f80213e3d8b593001eb4fa1cdf 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb @@ -12,6 +12,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb index 26eaffc5f6c6e498c35a450853f8653230983d67..10444c4ad79aa1471e9b36cc077820028c362f35 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb @@ -11,6 +11,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://download.savannah.gnu.org/releases/freetype/'] sources = [SOURCE_TAR_GZ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb index cbbe1daafc85a07b036f294a2a8afdc004b54294..b0e7a6a30e1c85b887fe2cf51c2634620936ea44 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb index a5e70027fab45f3d28f9efe1d5f213743d527443..d1983d852967621b6d16ab7249d4ff5075fffbae 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb index 8fa382b0ca5bbcdf01153d984dc710544db02b34..415101e28dc8de52199409e0dcdbf49d53071e2e 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb index 0571a145ad22f907ee04a574a6e75a775b1adea3..64e6ea7181c6635ef60066f118d128031d751eb1 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.9')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb index cea107f292165fe262e044e619fbfd3e3e992b2b..0d671ee5bbe7ac75ecdd5ab2350318688a89d71f 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.12')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb index 9b0aae30b7ce491d69e671a29749b6bf4a2d6e57..f35d8dc0c15b9551ce04f6a12199c7cc990219a5 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.12')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb index 45d6dc8e9383aa1602d9f784d69d43d999c9bf65..fb9b9599e8bec5ccd019bc60f4f6e0608cc3ff3b 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.12')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb index c9b6e770b41fd7f7952a975575a5a8f6685460e2..13b13e9cc7768d6cb4a0a119f994fd0abcfff887 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.16')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-goolf-1.7.20.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-goolf-1.7.20.eb index 773f70da967a4f61fe2d8653ddcd32d1f5a9126a..415f10d8744830de14d4acf06c16883c85d30468 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-goolf-1.7.20.eb @@ -16,8 +16,11 @@ dependencies = [ ('zlib', '1.2.8') ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb index 07f4f8160c3662738d01a384afe37f24614c4d95..3b19e214126583aa9d50b277c25aae3a478f6447 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.16')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb index 44080cb0f8fbb6a47f77ec7cff113fd8c450d01b..6d539701a6b84a15d87b8d8e993a69d8a6b5e59b 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.16')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb index 7cfa18b2f481f7758269f4b0a8a7c67adfc878c6..352ce2f725e9b0ebaaf1e76764b81862041fb4b9 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.17')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb index 78c7fb98d63ef7d13be2741bee0224e380afdcd4..5930e1dad73d540a27b5694aa551434ef12e99f6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.17')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb index 4cf88e23a77550008e040cebf9acd762fd8b2d31..febe99790f16fb80bf6525c1ea3ca785032bda63 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.17')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb index 8405a0ec9357ebb0383917d000e7c0787972ed8b..4ed20bab251ce0cc19ca340f683c6d846665dc34 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb @@ -15,6 +15,8 @@ libpngver = '1.6.19' versionsuffix = '-libpng-%s' % libpngver dependencies = [('libpng', libpngver)] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb index 9c9d2b2e0891b1cde689fc53ac81dcc4cadbc6af..2b433c814040b2bbca9e25c4909f413b9810c3a3 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.18')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-CrayGNU-2015.11.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-CrayGNU-2015.11.eb index 7f9b603bc65faa52d8b46126a50bcee29ffc269e..b8dc673ae8505eaa9efcae1bfdfadd5a74e3e3f0 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-CrayGNU-2015.11.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.21')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb index bbfd2a25088d42067809da352d09c54a405a770f..8d1ddddc16fc676538aaab8d1e6b3c77352fc41b 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.20')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb index 912f826139413a4a8bf751c62b9a3c4413ef25de..446146f3b1bf55d1162f41d320a893c9ad39ad08 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.21')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2016a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2016a.eb index 932824a17e8271f228be46c473c0fdc28d90538c..75cf76d290edb8617ec002133cd93e17d5894a09 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2016a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2016a.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-gimkl-2.11.5.eb index fec100e1f022981fcb70f63b03281d3b18ca28ae..d00692c7743cf295e34d37564dd9f845944bc8e1 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-gimkl-2.11.5.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.21')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-goolf-1.7.20.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-goolf-1.7.20.eb index 7436cc5833e5499e150035d9ff10e31845532b8b..e7a7a3593df227caa8b820db06194631d3013d0b 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-goolf-1.7.20.eb @@ -16,8 +16,11 @@ dependencies = [ ('zlib', '1.2.8') ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb index 0811253154166a1820d050035053515e24178a71..896545c2ea14285fe2e8f213d6af5d3bee36f56c 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb @@ -13,6 +13,8 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.21')] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb index 60b3db5452598527e1b53c024f1a279c28a0daa1..7b8aa9c093492fed05f4016c83b1b239604ad212 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.3-foss-2016a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.3-foss-2016a.eb index d267c83653d1046fbd645c03dea04132187158c9..1b349e27066c88e7f924a08ee74c834442fec9a6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.3-foss-2016a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.3-foss-2016a.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.3-intel-2016a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.3-intel-2016a.eb index 3d89e4bbb1d7e3dcfb354d5c80485da0b16f7682..fe187d840819a9693889d411c9a368aa4644e5f6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.3-intel-2016a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.3-intel-2016a.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.5-GCCcore-5.4.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.5-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5aca0569756c288a5db8205f8a3e22c69b11edea --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.5-GCCcore-5.4.0.eb @@ -0,0 +1,30 @@ +name = 'freetype' +version = '2.6.5' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('libpng', '1.6.24'), + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +builddependencies = [('binutils', '2.26', '', True)] + +configopts = '--with-harfbuzz=no' + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.5-foss-2016b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.5-foss-2016b.eb index 9156052c8f80538dcf9e207ebefbcb55813a513e..f59391c7f98380bc8e408fb2a236e1dc43051880 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.5-foss-2016b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.5-foss-2016b.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.5-intel-2016b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.5-intel-2016b.eb index bf9e0cfc01c3ed31e70e7042a11033f8a36033e2..68aae21c57cd624a52bf3a127f41b20ffd3f4ac6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.5-intel-2016b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.5-intel-2016b.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7-foss-2016b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7-foss-2016b.eb index 8b88736d00a0a14b914b4b41faa4f86a02d997dc..85f52fb15e6ed04123dff2e611b499a76a3b0124 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7-foss-2016b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7-foss-2016b.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7-intel-2016b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7-intel-2016b.eb index 52d8477931111ad36d7bd096d4f45f8b0e8ad9a6..154dcf903bf9d743310fd5f1d261c9fc2cf4019e 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7-intel-2016b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7-intel-2016b.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-5.4.0.eb index fee6777ad044875848d8d7c93e82d879e59aeb2c..f01c0208b568b4534743b59e4952e8f001796a90 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-5.4.0.eb @@ -20,6 +20,8 @@ dependencies = [ # use same binutils version that was used when building GCCcore toolchain builddependencies = [('binutils', '2.26', '', True)] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0-libpng-1.6.29.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0-libpng-1.6.29.eb index 1b0dc16aba5dc05f36cf830d025caee710e4edb1..8016819a78f2b84edeb69607a600aa0a8e1fbc09 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0-libpng-1.6.29.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0-libpng-1.6.29.eb @@ -22,6 +22,8 @@ dependencies = [ # use same binutils version that was used when building GCCcore toolchain builddependencies = [('binutils', '2.27', '', True)] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0.eb index 2892f7ffb0e150671477915c2a52a9e9301ff712..50a10ef694fd0217013e430d904d115b5f9e471d 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-GCCcore-6.3.0.eb @@ -20,6 +20,8 @@ dependencies = [ # use same binutils version that was used when building GCCcore toolchain builddependencies = [('binutils', '2.27', '', True)] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-gimkl-2017a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ec9a259e85c92a903612efa96b60f7c9c7330f79 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-gimkl-2017a.eb @@ -0,0 +1,26 @@ +name = 'freetype' +version = "2.7.1" + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('libpng', '1.6.28'), + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-intel-2016b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-intel-2016b.eb index d3a160563e8bf6c11ffeddbf67130245bceba787..752f791cd931529b1d0fedd2621d3e0d57424dd7 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.7.1-intel-2016b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.7.1-intel-2016b.eb @@ -17,6 +17,8 @@ dependencies = [ ('zlib', '1.2.8'), ] +configopts = '--with-harfbuzz=no' + sanity_check_paths = { 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..683ea59e3da2717072e4b62f7fbb5e2f7ef9845c --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.8-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +name = 'freetype' +version = '2.8' + +homepage = 'http://freetype.org' + +description = """ + FreeType 2 is a software font engine that is designed to be small, efficient, + highly customizable, and portable while capable of producing high-quality + output (glyph images). It can be used in graphics libraries, display servers, + font conversion tools, text image generation tools, and many other products + as well. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['33a28fabac471891d0523033e99c0005b95e5618dc8ffa7fa47f9dadcacb1c9b'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libpng', '1.6.30'), + ('zlib', '1.2.11'), +] + +configopts = '--with-harfbuzz=no' + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', + 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb index 89a8046f2fe93f2a32562e62252e98c15ca4a0a6..a70370fb6a38eaeb68d7408d998003598b8c0f09 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb @@ -8,8 +8,11 @@ description = """GATE is an advanced opensource software developed by the intern toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] +sources = [{ + 'filename': '%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), + 'extract_cmd': "tar xfvz %s", +}] patches = [ 'GATE-%(version)s_Makefile-prefix.patch', diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb index 1a6ef28db96f3ad8f904b8ecc2288950d3a4c709..9cfaecb8e1a6f8901177df007e89bf1d97917589 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb @@ -8,8 +8,11 @@ description = """GATE is an advanced opensource software developed by the intern toolchain = {'name': 'intel', 'version': '2015a'} -sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] +sources = [{ + 'filename': '%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), + 'extract_cmd': "tar xfvz %s", +}] patches = [ 'GATE-%(version)s_Makefile-prefix.patch', diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2016a-Python-2.7.11.eb index d237afef62bb79119ed24d9c2319dd33d2bf2095..34c0cd8a2ecb93d6b1acf88530153bea3d6bfad8 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2016a-Python-2.7.11.eb @@ -9,8 +9,11 @@ description = """GATE is an advanced opensource software developed by the intern toolchain = {'name': 'intel', 'version': '2016a'} -sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] +sources = [{ + 'filename': '%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), + 'extract_cmd': "tar xfvz %s", +}] patches = [ 'GATE-%(version)s_Makefile-prefix.patch', diff --git a/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb b/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb index 85541021f4d1db7119ee74c0897e4570c1bf8440..c3235c1acdf0c694ba862ae1a5c0c80a1ded8c8d 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb @@ -8,7 +8,10 @@ description = """GATE is an advanced opensource software developed by the intern toolchain = {'name': 'intel', 'version': '2015a'} -sources = [('%(namelower)s_v%(version)s.tar_.gz', "tar xfvz %s")] +sources = [{ + 'filename': '%(namelower)s_v%(version)s.tar_.gz', + 'extract_cmd': "tar xfvz %s", +}] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/'] patches = [ diff --git a/easybuild/easyconfigs/g/GATE/GATE-7.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/g/GATE/GATE-7.1-intel-2016a-Python-2.7.11.eb index ddcd9aaa7c1a10c1f2eba08bde6f21bd8eb79ffa..f338b1fb8649234f20c363ce24cc925e0e8aea9a 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-7.1-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-7.1-intel-2016a-Python-2.7.11.eb @@ -9,7 +9,10 @@ description = """GATE is an advanced opensource software developed by the intern toolchain = {'name': 'intel', 'version': '2016a'} -sources = [('%(namelower)s_v%(version)s.tar.gz', "tar xfvz %s")] +sources = [{ + 'filename': '%(namelower)s_v%(version)s.tar.gz', + 'extract_cmd': "tar xfvz %s", +}] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/'] patches = [ diff --git a/easybuild/easyconfigs/g/GATE/GATE-7.2-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/g/GATE/GATE-7.2-intel-2016a-Python-2.7.11.eb index 91e8c30f8c12ee523d753bd559d261effcb0a17d..923a13d19fece3e0384f721312ecea395041ffd5 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-7.2-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-7.2-intel-2016a-Python-2.7.11.eb @@ -9,7 +9,10 @@ description = """GATE is an advanced opensource software developed by the intern toolchain = {'name': 'intel', 'version': '2016a'} -sources = [('%(namelower)s_v%(version)s.tar.gz', "tar xfvz %s")] +sources = [{ + 'filename': '%(namelower)s_v%(version)s.tar.gz', + 'extract_cmd': "tar xfvz %s", +}] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/'] patches = [ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 6afbdb7b4c3356cd991e8804a1f61d4912e67145..b64688b618ca77c665737a071b159c7dae307475 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 921621187e4008036eaa483c57c5af55180306e2..1b89f6c6ecc1aea7551c85cfacf88a35b88af076 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index 7e9f79abb84ff8e2cc1198236f507494bc30e7ec..1969cdc702bf0902658e032e583abb6fd4f3ce00 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index 959d6f681a7e8dd996ae70b4ca918a47c38869d8..df931a819c35f0a1250722cc8d87071d3c038b23 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb index a6fc22eedf1e257ac4834471f582160989a3dda7..afaf5a587aceb6e215106d00210005a8b3610dca 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb index bae4a90d9192a6d75f0fe93d5b8010a0e24b5954..fd5122e871a04694075aad422c51248f00c52a07 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb index 88a772e2f89da61d83a2d5ff08ba7c364900fba1..f3b21831fe600675b4a0af18ffd7084e82a6deb4 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb index d0d5a239b60c58491c9068e5a78de26a262ca81c..8dd25ea92a3deffe2573f3b30a8f305ee374031e 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb index b6d45b10eabdb7edc49e0343e711c21e1938dd94..598a86e9b2d2bf0c72f00709746f4f5e57f95157 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb index 935f73ec903c0c5b26a71dd415cd9f592b604a0f..06ec8c03a740589ff28188a780dec8a214db500f 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_74.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb b/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb index 6ed0f408638c910cbc8d35edf93b7b9f870e23f3..bd6fea5ef5d3af12b30133811a234bc48dd7ec16 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.6-Java-1.8.0_92.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb b/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb index afc148cb14e86d91ee4e1a14f85d240d1e0a3b68..bc0c66d4fe651da62dc7bf42e1dc0ef3eab9b65d 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.7-Java-1.8.0_112.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB # Authors:: George Tsouloupas , Fotis Georgatos , diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb index 15db97e46228730edc4d50f31fe511bc6d79fe0c..3353304539ca86e26e15553f8dd9ff6931f0dc70 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb @@ -7,7 +7,7 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +source_urls = ['http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb index 690c94392b68210353b7ad2a3d58ebfc8feac755..2315380a64ec7e873da3c37b08c778ef4fa98c02 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb @@ -7,7 +7,7 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +source_urls = ['http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb b/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb index d2df4b4c4283f695c83b37c27623ded012fe7bf6..49e488fc5dab7ff65939c294201b41f2d6965837 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb @@ -7,7 +7,7 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +source_urls = ['http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb b/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb index 584afb9b7cae1dc219e4a8ece7021de8ae2f737e..9a6e1777a2342db0b035bd03ba50dc65da1f730e 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb @@ -7,7 +7,7 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +source_urls = ['http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] checksums = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.2.eb index 719bc6f3153e1237155c22ecca4522fd903e8d62..e4f74a276943fde85d81d51e1aa65268696b3d79 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.2.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb index bcb7fd7639a6706de15cb624cc6eaf15df123bb7..137d7d524e6a142eda6df25ab4b0e8313eb6a915 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} pplver = '0.11' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official 'http://www.bastoul.net/cloog/pages/download/count.php3?url=.', # CLooG official diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb index 9a31d20e935f7c11450522f60b4ac80edffd4b26..df06986016d05102dff0a2fb9962039edd2d4cef 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.0.eb index f310421ff2f2ab48f7d4c21d5a216e75c9f73ce4..e34a70f28bf5db221f94f0cc03b836f8894edf64 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.0.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb index 3a9114bc8654b0f7b79b159d4d244a9263860721..5955aa5fd3b3d518da716b90451806864085676a 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} pplver = '0.12' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official 'http://www.bastoul.net/cloog/pages/download/count.php3?url=.', # CLooG official diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb index 884bd3660ed2101fff02999d160ce7a7246f78b1..a17723ccd7725b7bd51039fb9510012927dbf6fe 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb index 6d06e3dc2732674727b70f8214df0f9175b032d6..92eb1f920e1cfbb05b7ba4768c4d0c7ffba82824 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb index b46830b3c9569bef4d7fcf6c310796a80ba23abb..8c205727414f366c2980344a99613feaae34e168 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} pplver = '0.12' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official 'http://www.bastoul.net/cloog/pages/download/count.php3?url=.', # CLooG official diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb index 25a490f3555105125ea3cab90eba03790f2c48c4..c5bea4cc95097152e10d9deb13bbb19667723584 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb index 6c58ae7bc665ce04109c057c741ec9fafef2fd78..96faf6492a0466c3f8411607d0626ba7d927a2e8 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} pplver = '0.12' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb index b3ad3f80878176b2a3a3b4c23f7d09ba6a159a96..b98f04d03d5712ac46139eeecd04ab38151eff2b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb index decee62a5859c5f930e40bd3782ebe1dc6c40b1a..52df95a761e4b7b05f822f181209f6df2b6f9c00 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb index 8f5cae195cf19f66410fa3626c3838df124c461a..f76b5cd461c0fb416e743a6d3bbad72df893c10d 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} pplver = '0.12.1' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb index 03f65ea5f026b3eff5692ccef0efe5564a2b35f1..f082b457cb2e9ad5cffd3aebd6e584aa440afe4e 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb index da943f7026d9b7dca05e6920f55d09f71f9b3df7..bf7a65c4b85db32b7bee9e3d28893bfdc62636c0 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} pplver = '0.12.1' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb index 5d688569b04d945309671f09f4c271e90aaafd61..d6755a5d576b1f93b3ebe635b399c11c5f320688 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb index 618d5530316b16078f6900cb4e9e9c659511ba88..b9384bdcfee64f3e8f42f617353b6330042420d2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb index 85085960e869e77f517cdfc7091cc86e9f623ed8..cfc68d66f6b2f6722b4fd5ef6f94b922d6a29544 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb index 6d29040095f930ad3afe3c947402b65db9d9454f..f7ae0b63f1cace60b743717e8c56c86d52725306 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb index 9a60bde46d3d9888d0f994f4172f0868efd20e0c..53a6b802c8e0e1d61f20d88e21631717e2f3a5fe 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb index 8154896aaaf51e58bdf4e6af8db24499a4a523bf..62ff1a29d8085bdff57ee26228633445ebdb22d2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb index 525d8bbaf403b4b595476e6e1a609c1a2abe46cb..ac1ea618e1674b63e22e0da29551e16cf24e4910 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb index 54f482d9068d3eac382cf149668acb0dff725d4c..55705b2a562fb1bfc3ca2e24f671a2a0f73739bb 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb index d300b36d8f4abd51f8fde9cdbbcb710e47b7360a..47fcc28da680aed320e4416d64b6623275587b72 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb index 89f13931a3b3e647671c3a0f26dbf1d905e9b8dd..8bc99398c56a672aa93585e67b14895c5230a9c6 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb index 1fee24d2add5af392da3ceff6bae4b430c4b35dc..d04c5b59897bd3d6addc6104d1db32909681e475 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb @@ -9,9 +9,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb index 5149d85b529355ff3d0a09bdc9cf4266fbd331cb..18e237e8117e903be5e9c265e7560c99cd4c2a94 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.5.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.5.eb index 358952fcd93440f78f5bd69cfcdf78f04c75f0a0..7a8cd2b76840dc5814f7975a49a1806513e9ec28 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.5.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.5.eb @@ -8,9 +8,9 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb index c0cd444cef0d2b27599d9277f3f8a16cb578ca6a..3d2b9ee9c00ff79b21f435cc5bb9138de5e3f75c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb index 7a4b755a4c35d39c0e9de73b36ac616c72760db2..3d655c2b614a09c9bd14c20a0d801cc8ecb7db99 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb index 288754285b5fc3188f8b0b99b631a50a785c1e54..68428b6c438a238c2bba829f9d25e17ca1cf02c2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb index bd08517bfa637294c6e3a9a17a7f4f6268ff5c85..9e22d2092e5354fba845407821ea832d9794a111 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb index 5cb7dc788a8ad35ebceb4a15f4fe2dc4513aad4f..ba83e49da7c970aeb5d7cf83be0c080ada852401 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb index d520b55ace0ec67bce667f284b5320d3897e8606..39947a23d75a319f72eb67053b34032b464c699f 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb index 4b52dcc3437a66203265dd17f447bba71ba9fc7e..de353eab4d9983f33f2de2a94d0df658a2ee3ba6 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb index 1ec5100100b6e1f24f0f6356dff4663db1b153b7..b598d63b4c0d528239f0f599742036797fcdf347 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'http://www.bastoul.net/cloog/pages/download/', # CLooG official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb index 44e39d233dbce4c9893ed772eaab89aca95e59a1..62739aefa44cd09e5f0dd190c88052506851f50b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb @@ -13,9 +13,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb index e9df0050c041397c2f8ff48cbe11f1fbbd8e00b1..8586c48e2c9c26203991e9efc6ce500568e62d1b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.3-binutils-2.25.eb index 8c62c139203918cb14e9cada43fafc3495ebb668..30c074962210903c4d03b8d6b4e637a0cfa60ea6 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.3-binutils-2.25.eb @@ -13,9 +13,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.3.eb index e36af87104969d95f12581b321fe5cbf3403daf4..ef8f2e2c88b13bfe3a405b4e341aa6c6b72bd31c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.3.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-binutils-2.25.eb index 897ca9088c8676e97f5c6b6fd8b05126bdc57902..f271d37e8876438ba8686dbdbaefa40ec48e195d 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-binutils-2.25.eb @@ -13,9 +13,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb index 88c83fce429b42456ef0ac24970aa579ef5b7673..fb056c8d3b5ae5c64b04df728d57c0c6fc914cf9 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.2.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.2.0.eb index 4052ab789be4ee663e3a14db94fe0b59ab6120a6..66232b4383d7f3dd12552b1f5ac7803f9685c3ff 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.2.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.2.0.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.3' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb index 30c9cc61c034cd292e073f5164d9308f4f312299..bac0b46be0ac6d284311aa49dee37b3d76f82536 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb @@ -10,9 +10,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.3' source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb b/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb new file mode 100644 index 0000000000000000000000000000000000000000..f5f6e4e49d2f5c3e3bef16b1ce8aabc39643fec0 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-6.4.0-2.28.eb @@ -0,0 +1,31 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = '6.4.0' + +binutilsver = '2.28' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' + +description = """ + The GNU Compiler Collection includes front ends for C, C++, Objective-C, + Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, + libgcj,...). [NOTE: This module does not include Objective-C, Java or Ada] +""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore, which was built + # on top of (dummy-built) binutils + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, +# so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb b/easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e1f8bd6161ffe21a8e46ec8485b796691a2554b --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-7.2.0-2.29.eb @@ -0,0 +1,25 @@ +easyblock = 'Bundle' + +name = 'GCC' +version = '7.2.0' + +binutilsver = '2.29' +versionsuffix = '-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('GCCcore', version), + # binutils built on top of GCCcore, which was built on top of (dummy-built) binutils + ('binutils', binutilsver, '', ('GCCcore', version)), +] + +altroot = 'GCCcore' +altversion = 'GCCcore' + +# this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-system.eb b/easybuild/easyconfigs/g/GCC/GCC-system.eb index b24177d7132df72b011aaebf4e731d9047544eae..cff7cc3f076acc8b73a3c2aaf7528b2e60a2cc4a 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-system.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-system.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.2.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.2.eb index 872c6745e01b97bcb014ce11fc90d456d6e75f45..1247d0d3d23cdaa7c514bfaf877a75e1323bd18a 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.2.eb @@ -13,9 +13,9 @@ mpfr_version = '3.1.2' gcc_name = 'GCC' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb index d0d9f1d3a7d8ab5afeccff1adc610a1f24aa20b1..50cc39964de5a20be5fbcfb2d9797fd325545ea5 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.2' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.4.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.4.eb index 9a01aa75efb41c142b97c6e3b04ab782731b4dcb..04c34b3dcc66daa0175ca85bee3104aef1d0096d 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.4.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.4.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.4' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-5.3.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-5.3.0.eb index 508f91d3f8d5d909cdeb8662a4fbd2cea778fc90..cfbd5a57793b074cf557c935871e6ec1a8dfb853 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-5.3.0.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.3' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-5.4.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-5.4.0.eb index 1a5cf8b884ba18cfe4810234c88d0c1e0238d3d7..c44b03f2dbf11ddf3055c1a02683609cdfed8a41 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-5.4.0.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.4' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb index a645d605888b6da5bd2fa6a89c03d4054e7ef518..0423a2a00608a988e71b3251e31e8d567253741a 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.1.0.eb @@ -12,12 +12,12 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.4' source_urls = [ - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies - 'http://ftpmirror.gnu.org/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror 'https://ftp.gnu.org/gnu/gcc/gcc-%(version)s/', # Alternative GCC 'http://isl.gforge.inria.fr/', # original HTTP source for ISL ] @@ -38,6 +38,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20160804.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), ('%s-%s_fix-find-isl.patch' % (name, version)), + 'GCCcore-6.x-fix-ubsan.patch', ] checksums = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb index a460408c19c2644e24a0abda7138329128f78a32..2ac9bf8b097b231c8254b919e1489f0efd886fa6 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.2.0.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.4' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies @@ -37,6 +37,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20160804.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), '%(name)s-%(version)s-fix-find-isl.patch', + 'GCCcore-6.x-fix-ubsan.patch', ] checksums = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb index a581540c04a2bd943f1ac59bca6b8f226d12d884..96befaf7f095dab7c69ef1daf1f2a242fa3e0aea 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.3.0.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.5' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies @@ -37,6 +37,7 @@ builddependencies = [ patches = [ ('mpfr-%s-allpatches-20161215.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), 'GCCcore-6.2.0-fix-find-isl.patch', + 'GCCcore-6.x-fix-ubsan.patch', ] checksums = [ diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..37077d5dbfd00966a17e90b09ab014914c1ec00c --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.4.0.eb @@ -0,0 +1,60 @@ +easyblock = 'EB_GCC' + +name = 'GCCcore' +version = '6.4.0' + +homepage = 'http://gcc.gnu.org/' + +description = """ + The GNU Compiler Collection includes front ends for C, C++, Objective-C, + Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, + libgcj,...). [NOTE: This module does not include Objective-C, Java or Ada] +""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.5' + +source_urls = [ + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies + 'http://isl.gforge.inria.fr/', # original HTTP source for ISL +] + +sources = [ + 'gcc-%(version)s.tar.gz', + 'gmp-6.1.2.tar.bz2', + 'mpfr-%s.tar.bz2' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.16.1.tar.bz2', +] + +builddependencies = [ + ('M4', '1.4.18'), + ('binutils', '2.28'), +] + +patches = [ + ('mpfr-%s-allpatches-20170606.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), + 'GCCcore-6.2.0-fix-find-isl.patch', +] + +checksums = [ + '4715f02413f8a91d02d967521c084990c99ce1a671b8a450a80fbd4245f4b728', # gcc-6.4.0.tar.gz + '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 + 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.gz + '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz + '412538bb65c799ac98e17e8cfcdacbb257a57362acfaaff254b0fcae970126d2', # isl-0.16.1.tar.bz2 + '137108952139486755e8c1bee30314ffa9233cc05cddfd848aa85503a6fea9d7', # mpfr-3.1.5-allpatches-20170606.patch + '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68', # GCCcore-6.2.0-fix-find-isl.patch +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-6.x-fix-ubsan.patch b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.x-fix-ubsan.patch new file mode 100644 index 0000000000000000000000000000000000000000..1c8e22152a5c8c2378a08f2bf944a470961032c6 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-6.x-fix-ubsan.patch @@ -0,0 +1,16 @@ +# GCC 7 errors on comparing a pointer and an integer, code means to test +# first byte. This is fixed in 6.4.0 and onward by SVN revision 239971. +# Affects 6.1-6.3. +# Upstream credit: Kirill Yukhin +diff -ru gcc-6.3.0-orig/gcc/ubsan.c gcc-6.3.0/gcc/ubsan.c +--- gcc-6.3.0-orig/gcc/ubsan.c 2016-12-07 23:39:29.000000000 +0100 ++++ gcc-6.3.0/gcc/ubsan.c 2017-07-05 08:57:03.297566616 +0200 +@@ -1471,7 +1471,7 @@ + + expanded_location xloc = expand_location (loc); + if (xloc.file == NULL || strncmp (xloc.file, "\1", 2) == 0 +- || xloc.file == '\0' || xloc.file[0] == '\xff' ++ || xloc.file[0] == '\0' || xloc.file[0] == '\xff' + || xloc.file[1] == '\xff') + return false; + diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-7.1.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-7.1.0.eb index 6f69a58a66a04fd0276bb2436125ca926cef4e8d..198af84508797c8b8200641f55cb7794e1d6be77 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-7.1.0.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-7.1.0.eb @@ -12,9 +12,9 @@ toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.5' source_urls = [ - 'http://ftpmirror.gnu.org/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f12a1c7b740543087502a48c1bbb901c3b894146 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-7.2.0.eb @@ -0,0 +1,53 @@ +easyblock = 'EB_GCC' + +name = 'GCCcore' +version = '7.2.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.5' + +source_urls = [ + 'http://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gnu/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies + 'http://isl.gforge.inria.fr/', # original HTTP source for ISL +] +sources = [ + 'gcc-%(version)s.tar.gz', + 'gmp-6.1.2.tar.bz2', + 'mpfr-%s.tar.bz2' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.16.1.tar.bz2', +] +patches = [ + ('mpfr-%s-allpatches-20170801.patch' % mpfr_version, '../mpfr-%s' % mpfr_version), + 'GCCcore-6.2.0-fix-find-isl.patch', +] +checksums = [ + '0153a003d3b433459336a91610cca2995ee0fb3d71131bd72555f2231a6efcfc', # gcc-7.2.0.tar.gz + '5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2', # gmp-6.1.2.tar.bz2 + 'ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658', # mpfr-3.1.5.tar.bz2 + '617decc6ea09889fb08ede330917a00b16809b8db88c29c31bfbb49cbf88ecc3', # mpc-1.0.3.tar.gz + '412538bb65c799ac98e17e8cfcdacbb257a57362acfaaff254b0fcae970126d2', # isl-0.16.1.tar.bz2 + '62f11d5750a3a2c76f6b33ad581b15c75a0292a575107cabdd8d1f0ccb4e20a1', # mpfr-3.1.5-allpatches-20170801.patch + '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68', # GCCcore-6.2.0-fix-find-isl.patch +] + +builddependencies = [ + ('M4', '1.4.18'), + ('binutils', '2.29'), +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch new file mode 100644 index 0000000000000000000000000000000000000000..f25a39e54235cf02fca02fd400ea95163cb08ece --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170606.patch @@ -0,0 +1,689 @@ +# MPFR v3.1.5 patch dated 2017-06-06 +# downloaded via https://gforge.inria.fr/frs/?group_id=136 +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-15 08:35:46.476430238 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-15 08:35:46.544430346 +0000 +@@ -0,0 +1 @@ ++vasprintf +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-15 08:35:46.544430346 +0000 +@@ -1 +1 @@ +-3.1.5 ++3.1.5-p1 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5" ++#define MPFR_VERSION_STRING "3.1.5-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1593,7 +1593,7 @@ + } + else if (spec.spec == 'f' || spec.spec == 'F') + { +- if (spec.prec == -1) ++ if (spec.prec < 0) + spec.prec = 6; + if (regular_fg (np, p, spec, NULL) == -1) + goto error; +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-15 08:35:46.544430346 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5"; ++ return "3.1.5-p1"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1251,6 +1251,25 @@ + check_emin_aux (MPFR_EMIN_MIN); + } + ++static void ++test20161214 (void) ++{ ++ mpfr_t x; ++ char buf[32]; ++ const char s[] = "0x0.fffffffffffff8p+1024"; ++ int r; ++ ++ mpfr_init2 (x, 64); ++ mpfr_set_str (x, s, 16, MPFR_RNDN); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", -2, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN + 1, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN, x); ++ MPFR_ASSERTN(r == 316); ++ mpfr_clear (x); ++} ++ + int + main (int argc, char **argv) + { +@@ -1271,6 +1290,7 @@ + mixed (); + check_emax (); + check_emin (); ++ test20161214 (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + #if MPFR_LCONV_DPTS +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-19 22:11:17.022676737 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-19 22:11:17.094676820 +0000 +@@ -0,0 +1 @@ ++strtofr +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-19 22:11:17.094676820 +0000 +@@ -1 +1 @@ +-3.1.5-p1 ++3.1.5-p2 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p1" ++#define MPFR_VERSION_STRING "3.1.5-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/strtofr.c mpfr-3.1.5-b/src/strtofr.c +--- mpfr-3.1.5-a/src/strtofr.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/strtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -743,11 +743,14 @@ + of the pstr_size most significant digits of pstr->mant, with + equality in case exact is non-zero. */ + +- /* test if rounding is possible, and if so exit the loop */ +- if (exact || mpfr_can_round_raw (result, ysize, +- (pstr->negative) ? -1 : 1, +- ysize_bits - err - 1, +- MPFR_RNDN, rnd, MPFR_PREC(x))) ++ /* test if rounding is possible, and if so exit the loop. ++ Note: we also need to be able to determine the correct ternary value, ++ thus we use the MPFR_PREC(x) + (rnd == MPFR_RNDN) trick. ++ For example if result = xxx...xxx111...111 and rnd = RNDN, ++ then we know the correct rounding is xxx...xx(x+1), but we cannot know ++ the correct ternary value. */ ++ if (exact || mpfr_round_p (result, ysize, ysize_bits - err - 1, ++ MPFR_PREC(x) + (rnd == MPFR_RNDN))) + break; + + next_loop: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-19 22:11:17.094676820 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p1"; ++ return "3.1.5-p2"; + } +diff -Naurd mpfr-3.1.5-a/tests/tstrtofr.c mpfr-3.1.5-b/tests/tstrtofr.c +--- mpfr-3.1.5-a/tests/tstrtofr.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tstrtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -1191,6 +1191,24 @@ + mpfr_clears (e, x1, x2, (mpfr_ptr) 0); + } + ++/* Note: the number is 5^47/2^9. */ ++static void ++bug20161217 (void) ++{ ++ mpfr_t fp, z; ++ static const char * num = "0.1387778780781445675529539585113525390625e31"; ++ int inex; ++ ++ mpfr_init2 (fp, 110); ++ mpfr_init2 (z, 110); ++ inex = mpfr_strtofr (fp, num, NULL, 10, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ mpfr_set_str_binary (z, "10001100001000010011110110011101101001010000001011011110010001010100010100100110111101000010001011001100001101E-9"); ++ MPFR_ASSERTN(mpfr_equal_p (fp, z)); ++ mpfr_clear (fp); ++ mpfr_clear (z); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -1205,6 +1223,7 @@ + test20100310 (); + bug20120814 (); + bug20120829 (); ++ bug20161217 (); + + tests_end_mpfr (); + return 0; +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:21:17.580843571 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:21:17.604843293 +0000 +@@ -0,0 +1 @@ ++ret-macro +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:21:17.604843293 +0000 +@@ -1 +1 @@ +-3.1.5-p2 ++3.1.5-p3 +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 +@@ -873,7 +873,7 @@ + following two macros, unless the flag comes from another function + returning the ternary inexact value */ + #define MPFR_RET(I) return \ +- (I) ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 ++ (I) != 0 ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 + #define MPFR_RET_NAN return (__gmpfr_flags |= MPFR_FLAGS_NAN), 0 + + #define MPFR_SET_ERANGE() (__gmpfr_flags |= MPFR_FLAGS_ERANGE) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p2" ++#define MPFR_VERSION_STRING "3.1.5-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:21:17.604843293 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p2"; ++ return "3.1.5-p3"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:50:30.708438500 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:50:30.736438175 +0000 +@@ -0,0 +1 @@ ++tests-buffer-size +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:50:30.736438175 +0000 +@@ -1 +1 @@ +-3.1.5-p3 ++3.1.5-p4 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p3" ++#define MPFR_VERSION_STRING "3.1.5-p4" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:50:30.736438175 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p3"; ++ return "3.1.5-p4"; + } +diff -Naurd mpfr-3.1.5-a/tests/tl2b.c mpfr-3.1.5-b/tests/tl2b.c +--- mpfr-3.1.5-a/tests/tl2b.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tl2b.c 2017-06-06 19:50:30.724438314 +0000 +@@ -83,7 +83,7 @@ + mpfr_srcptr t; + int beta, i; + int error = 0; +- char buffer[30]; ++ char buffer[256]; /* larger than needed, for maintainability */ + + for (beta = 2; beta <= BASE_MAX; beta++) + { +diff -Naurd mpfr-3.1.5-a/tests/tpow_all.c mpfr-3.1.5-b/tests/tpow_all.c +--- mpfr-3.1.5-a/tests/tpow_all.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tpow_all.c 2017-06-06 19:50:30.724438314 +0000 +@@ -498,7 +498,7 @@ + for (i = 0; i <= 12; i++) + { + unsigned int flags = 0; +- char sy[16]; ++ char sy[256]; /* larger than needed, for maintainability */ + + /* Test 2^(emin - i/4). + * --> Underflow iff i > 4. +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:57:01.947910247 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:57:01.971909970 +0000 +@@ -0,0 +1 @@ ++vasprintf-overflow-check +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:57:01.971909970 +0000 +@@ -1 +1 @@ +-3.1.5-p4 ++3.1.5-p5 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p4" ++#define MPFR_VERSION_STRING "3.1.5-p5" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 +@@ -1452,7 +1452,7 @@ + struct printf_spec spec) + { + char *str; +- long total; ++ unsigned int total; /* can hold the sum of two non-negative int's + 1 */ + int uppercase; + + /* WARNING: left justification means right space padding */ +@@ -1645,43 +1645,43 @@ + + /* compute the number of characters to be written verifying it is not too + much */ ++ ++#define INCR_TOTAL(v) \ ++ do { \ ++ MPFR_ASSERTD ((v) >= 0); \ ++ if (MPFR_UNLIKELY ((v) > INT_MAX)) \ ++ goto error; \ ++ total += (v); \ ++ if (MPFR_UNLIKELY (total > INT_MAX)) \ ++ goto error; \ ++ } while (0) ++ + total = np->sign ? 1 : 0; +- total += np->prefix_size; +- total += np->ip_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->ip_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->prefix_size); ++ INCR_TOTAL (np->ip_size); ++ INCR_TOTAL (np->ip_trailing_zeros); ++ MPFR_ASSERTD (np->ip_size + np->ip_trailing_zeros >= 1); + if (np->thousands_sep) + /* ' flag, style f and the thousands separator in current locale is not + reduced to the null character */ +- total += (np->ip_size + np->ip_trailing_zeros) / 3; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL ((np->ip_size + np->ip_trailing_zeros - 1) / 3); + if (np->point) + ++total; +- total += np->fp_leading_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->exp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->fp_leading_zeros); ++ INCR_TOTAL (np->fp_size); ++ INCR_TOTAL (np->fp_trailing_zeros); ++ INCR_TOTAL (np->exp_size); + + if (spec.width > total) + /* pad with spaces or zeros depending on np->pad_type */ + { + np->pad_size = spec.width - total; + total += np->pad_size; /* here total == spec.width, +- so 0 < total < INT_MAX */ ++ so 0 < total <= INT_MAX */ ++ MPFR_ASSERTD (total == spec.width); + } + ++ MPFR_ASSERTD (total > 0 && total <= INT_MAX); + return total; + + error: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:57:01.971909970 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p4"; ++ return "3.1.5-p5"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:17:02.489704106 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:17:02.513703814 +0000 +@@ -0,0 +1 @@ ++printf-errno +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:17:02.513703814 +0000 +@@ -1 +1 @@ +-3.1.5-p5 ++3.1.5-p6 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p5" ++#define MPFR_VERSION_STRING "3.1.5-p6" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/printf.c mpfr-3.1.5-b/src/printf.c +--- mpfr-3.1.5-a/src/printf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/printf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -40,7 +40,6 @@ + # endif /* HAVE___VA_COPY */ + #endif /* HAVE_VA_COPY */ + +-#include + #include "mpfr-impl.h" + + #ifdef _MPFR_H_HAVE_FILE +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -52,6 +52,8 @@ + #include /* for ptrdiff_t */ + #endif + ++#include ++ + #define MPFR_NEED_LONGLONG_H + #include "mpfr-intmax.h" + #include "mpfr-impl.h" +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:17:02.513703814 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p5"; ++ return "3.1.5-p6"; + } +diff -Naurd mpfr-3.1.5-a/tests/tprintf.c mpfr-3.1.5-b/tests/tprintf.c +--- mpfr-3.1.5-a/tests/tprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -26,6 +26,7 @@ + #include + #include + #include ++#include + + #include "mpfr-intmax.h" + #include "mpfr-test.h" +@@ -109,6 +110,33 @@ + } + + static void ++check_vprintf_overflow (const char *fmt, ...) ++{ ++ va_list ap; ++ int r, e; ++ ++ va_start (ap, fmt); ++ errno = 0; ++ r = mpfr_vprintf (fmt, ap); ++ e = errno; ++ va_end (ap); ++ ++ if (r != -1 ++#ifdef EOVERFLOW ++ || e != EOVERFLOW ++#endif ++ ) ++ { ++ putchar ('\n'); ++ fprintf (stderr, "Error in mpfr_vprintf(\"%s\", ...)\n" ++ "Got r = %d, errno = %d\n", fmt, r, e); ++ exit (1); ++ } ++ ++ putchar ('\n'); ++} ++ ++static void + check_invalid_format (void) + { + int i = 0; +@@ -167,8 +195,8 @@ + mpfr_set_ui (x, 1, MPFR_RNDN); + mpfr_nextabove (x); + +- check_vprintf_failure ("%Rb", x); +- check_vprintf_failure ("%RA %RA %Ra %Ra", x, x, x, x); ++ check_vprintf_overflow ("%Rb", x); ++ check_vprintf_overflow ("%RA %RA %Ra %Ra", x, x, x, x); + + mpfr_clear (x); + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:24:00.580702002 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:24:00.604701719 +0000 +@@ -0,0 +1 @@ ++tsprintf-setlocale +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:24:00.604701719 +0000 +@@ -1 +1 @@ +-3.1.5-p6 ++3.1.5-p7 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p6" ++#define MPFR_VERSION_STRING "3.1.5-p7" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:24:00.604701719 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p6"; ++ return "3.1.5-p7"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2017-06-06 20:24:00.596701813 +0000 +@@ -1273,13 +1273,12 @@ + int + main (int argc, char **argv) + { +- char *locale; + + tests_start_mpfr (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + /* currently, we just check with 'C' locale */ +- locale = setlocale (LC_ALL, "C"); ++ setlocale (LC_ALL, "C"); + #endif + + bug20111102 (); +@@ -1297,7 +1296,7 @@ + locale_da_DK (); + /* Avoid a warning by doing the setlocale outside of this #if */ + #endif +- setlocale (LC_ALL, locale); ++ setlocale (LC_ALL, "C"); + #endif + + if (getenv ("MPFR_CHECK_LIBC_PRINTF")) +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:31:35.919341495 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:31:35.943341213 +0000 +@@ -0,0 +1 @@ ++mpf-compat-signed +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:31:35.943341213 +0000 +@@ -1 +1 @@ +-3.1.5-p7 ++3.1.5-p8 +diff -Naurd mpfr-3.1.5-a/src/mpf2mpfr.h mpfr-3.1.5-b/src/mpf2mpfr.h +--- mpfr-3.1.5-a/src/mpf2mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpf2mpfr.h 2017-06-06 20:31:35.931341353 +0000 +@@ -93,15 +93,15 @@ + #undef mpf_div_2exp + #define mpf_div_2exp(x,y,z) mpfr_div_2exp(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_fits_slong_p +-#define mpf_fits_slong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_slong_p(x) mpfr_fits_slong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ulong_p + #define mpf_fits_ulong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sint_p +-#define mpf_fits_sint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sint_p(x) mpfr_fits_sint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_uint_p + #define mpf_fits_uint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sshort_p +-#define mpf_fits_sshort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sshort_p(x) mpfr_fits_sshort_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ushort_p + #define mpf_fits_ushort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) + #undef mpf_get_str +@@ -113,7 +113,7 @@ + #undef mpf_get_ui + #define mpf_get_ui(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) + #undef mpf_get_si +-#define mpf_get_si(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) ++#define mpf_get_si(x) mpfr_get_si(x,MPFR_DEFAULT_RND) + #undef mpf_inp_str + #define mpf_inp_str(x,y,z) mpfr_inp_str(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_set_str +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 20:31:35.931341353 +0000 +@@ -342,11 +342,15 @@ + #define MPFR_FLAGS_DIVBY0 32 + #define MPFR_FLAGS_ALL 63 + +-/* Replace some common functions for direct access to the global vars */ +-#define mpfr_get_emin() (__gmpfr_emin + 0) +-#define mpfr_get_emax() (__gmpfr_emax + 0) +-#define mpfr_get_default_rounding_mode() (__gmpfr_default_rounding_mode + 0) +-#define mpfr_get_default_prec() (__gmpfr_default_fp_bit_precision + 0) ++/* Replace some common functions for direct access to the global vars. ++ The casts prevent these macros from being used as a lvalue (and this ++ method makes sure that the expressions have the correct type). */ ++#define mpfr_get_emin() ((mpfr_exp_t) __gmpfr_emin) ++#define mpfr_get_emax() ((mpfr_exp_t) __gmpfr_emax) ++#define mpfr_get_default_rounding_mode() \ ++ ((mpfr_rnd_t) __gmpfr_default_rounding_mode) ++#define mpfr_get_default_prec() \ ++ ((mpfr_prec_t) __gmpfr_default_fp_bit_precision) + + #define mpfr_clear_flags() \ + ((void) (__gmpfr_flags = 0)) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:31:35.939341259 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p7" ++#define MPFR_VERSION_STRING "3.1.5-p8" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:31:35.943341213 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p7"; ++ return "3.1.5-p8"; + } +diff -Naurd mpfr-3.1.5-a/tests/mpf_compat.h mpfr-3.1.5-b/tests/mpf_compat.h +--- mpfr-3.1.5-a/tests/mpf_compat.h 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/mpf_compat.h 2017-06-06 20:31:35.931341353 +0000 +@@ -20,16 +20,10 @@ + http://www.gnu.org/licenses/ or write to the Free Software Foundation, Inc., + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. */ + +-#if defined (__cplusplus) +-#include +-#else +-#include +-#endif + #include +-#include + +-#include "gmp.h" +-#include "mpfr.h" ++#include "mpfr-impl.h" ++ + #ifdef MPFR + #include "mpf2mpfr.h" + #endif +@@ -228,6 +222,16 @@ + exit (1); + } + ++ /* non-regression tests for bugs fixed in revision 11565 */ ++ mpf_set_si (x, -1); ++ MPFR_ASSERTN(mpf_fits_ulong_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_slong_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_uint_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sint_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_ushort_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sshort_p (x) != 0); ++ MPFR_ASSERTN(mpf_get_si (x) == -1); ++ + /* clear all variables */ + mpf_clear (y); + mpf_clear (x); diff --git a/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch new file mode 100644 index 0000000000000000000000000000000000000000..fe26596b10f806d7ba7586009bca76686bf43ac3 --- /dev/null +++ b/easybuild/easyconfigs/g/GCCcore/mpfr-3.1.5-allpatches-20170801.patch @@ -0,0 +1,785 @@ +# MPFR v3.1.5 patch dated 2017-06-06 +# downloaded via https://gforge.inria.fr/frs/?group_id=136 +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-15 08:35:46.476430238 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-15 08:35:46.544430346 +0000 +@@ -0,0 +1 @@ ++vasprintf +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-15 08:35:46.544430346 +0000 +@@ -1 +1 @@ +-3.1.5 ++3.1.5-p1 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5" ++#define MPFR_VERSION_STRING "3.1.5-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1593,7 +1593,7 @@ + } + else if (spec.spec == 'f' || spec.spec == 'F') + { +- if (spec.prec == -1) ++ if (spec.prec < 0) + spec.prec = 6; + if (regular_fg (np, p, spec, NULL) == -1) + goto error; +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-15 08:35:46.544430346 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5"; ++ return "3.1.5-p1"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 +@@ -1251,6 +1251,25 @@ + check_emin_aux (MPFR_EMIN_MIN); + } + ++static void ++test20161214 (void) ++{ ++ mpfr_t x; ++ char buf[32]; ++ const char s[] = "0x0.fffffffffffff8p+1024"; ++ int r; ++ ++ mpfr_init2 (x, 64); ++ mpfr_set_str (x, s, 16, MPFR_RNDN); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", -2, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN + 1, x); ++ MPFR_ASSERTN(r == 316); ++ r = mpfr_snprintf (buf, 32, "%.*RDf", INT_MIN, x); ++ MPFR_ASSERTN(r == 316); ++ mpfr_clear (x); ++} ++ + int + main (int argc, char **argv) + { +@@ -1271,6 +1290,7 @@ + mixed (); + check_emax (); + check_emin (); ++ test20161214 (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + #if MPFR_LCONV_DPTS +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2016-12-19 22:11:17.022676737 +0000 ++++ mpfr-3.1.5-b/PATCHES 2016-12-19 22:11:17.094676820 +0000 +@@ -0,0 +1 @@ ++strtofr +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/VERSION 2016-12-19 22:11:17.094676820 +0000 +@@ -1 +1 @@ +-3.1.5-p1 ++3.1.5-p2 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-15 08:35:46.540430340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p1" ++#define MPFR_VERSION_STRING "3.1.5-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/strtofr.c mpfr-3.1.5-b/src/strtofr.c +--- mpfr-3.1.5-a/src/strtofr.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/strtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -743,11 +743,14 @@ + of the pstr_size most significant digits of pstr->mant, with + equality in case exact is non-zero. */ + +- /* test if rounding is possible, and if so exit the loop */ +- if (exact || mpfr_can_round_raw (result, ysize, +- (pstr->negative) ? -1 : 1, +- ysize_bits - err - 1, +- MPFR_RNDN, rnd, MPFR_PREC(x))) ++ /* test if rounding is possible, and if so exit the loop. ++ Note: we also need to be able to determine the correct ternary value, ++ thus we use the MPFR_PREC(x) + (rnd == MPFR_RNDN) trick. ++ For example if result = xxx...xxx111...111 and rnd = RNDN, ++ then we know the correct rounding is xxx...xx(x+1), but we cannot know ++ the correct ternary value. */ ++ if (exact || mpfr_round_p (result, ysize, ysize_bits - err - 1, ++ MPFR_PREC(x) + (rnd == MPFR_RNDN))) + break; + + next_loop: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-15 08:35:46.544430346 +0000 ++++ mpfr-3.1.5-b/src/version.c 2016-12-19 22:11:17.094676820 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p1"; ++ return "3.1.5-p2"; + } +diff -Naurd mpfr-3.1.5-a/tests/tstrtofr.c mpfr-3.1.5-b/tests/tstrtofr.c +--- mpfr-3.1.5-a/tests/tstrtofr.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tstrtofr.c 2016-12-19 22:11:17.066676788 +0000 +@@ -1191,6 +1191,24 @@ + mpfr_clears (e, x1, x2, (mpfr_ptr) 0); + } + ++/* Note: the number is 5^47/2^9. */ ++static void ++bug20161217 (void) ++{ ++ mpfr_t fp, z; ++ static const char * num = "0.1387778780781445675529539585113525390625e31"; ++ int inex; ++ ++ mpfr_init2 (fp, 110); ++ mpfr_init2 (z, 110); ++ inex = mpfr_strtofr (fp, num, NULL, 10, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ mpfr_set_str_binary (z, "10001100001000010011110110011101101001010000001011011110010001010100010100100110111101000010001011001100001101E-9"); ++ MPFR_ASSERTN(mpfr_equal_p (fp, z)); ++ mpfr_clear (fp); ++ mpfr_clear (z); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -1205,6 +1223,7 @@ + test20100310 (); + bug20120814 (); + bug20120829 (); ++ bug20161217 (); + + tests_end_mpfr (); + return 0; +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:21:17.580843571 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:21:17.604843293 +0000 +@@ -0,0 +1 @@ ++ret-macro +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:21:17.604843293 +0000 +@@ -1 +1 @@ +-3.1.5-p2 ++3.1.5-p3 +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 +@@ -873,7 +873,7 @@ + following two macros, unless the flag comes from another function + returning the ternary inexact value */ + #define MPFR_RET(I) return \ +- (I) ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 ++ (I) != 0 ? ((__gmpfr_flags |= MPFR_FLAGS_INEXACT), (I)) : 0 + #define MPFR_RET_NAN return (__gmpfr_flags |= MPFR_FLAGS_NAN), 0 + + #define MPFR_SET_ERANGE() (__gmpfr_flags |= MPFR_FLAGS_ERANGE) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2016-12-19 22:11:17.090676815 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p2" ++#define MPFR_VERSION_STRING "3.1.5-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2016-12-19 22:11:17.094676820 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:21:17.604843293 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p2"; ++ return "3.1.5-p3"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:50:30.708438500 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:50:30.736438175 +0000 +@@ -0,0 +1 @@ ++tests-buffer-size +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:50:30.736438175 +0000 +@@ -1 +1 @@ +-3.1.5-p3 ++3.1.5-p4 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:21:17.600843340 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p3" ++#define MPFR_VERSION_STRING "3.1.5-p4" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:21:17.604843293 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:50:30.736438175 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p3"; ++ return "3.1.5-p4"; + } +diff -Naurd mpfr-3.1.5-a/tests/tl2b.c mpfr-3.1.5-b/tests/tl2b.c +--- mpfr-3.1.5-a/tests/tl2b.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tl2b.c 2017-06-06 19:50:30.724438314 +0000 +@@ -83,7 +83,7 @@ + mpfr_srcptr t; + int beta, i; + int error = 0; +- char buffer[30]; ++ char buffer[256]; /* larger than needed, for maintainability */ + + for (beta = 2; beta <= BASE_MAX; beta++) + { +diff -Naurd mpfr-3.1.5-a/tests/tpow_all.c mpfr-3.1.5-b/tests/tpow_all.c +--- mpfr-3.1.5-a/tests/tpow_all.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tpow_all.c 2017-06-06 19:50:30.724438314 +0000 +@@ -498,7 +498,7 @@ + for (i = 0; i <= 12; i++) + { + unsigned int flags = 0; +- char sy[16]; ++ char sy[256]; /* larger than needed, for maintainability */ + + /* Test 2^(emin - i/4). + * --> Underflow iff i > 4. +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 19:57:01.947910247 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 19:57:01.971909970 +0000 +@@ -0,0 +1 @@ ++vasprintf-overflow-check +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 19:57:01.971909970 +0000 +@@ -1 +1 @@ +-3.1.5-p4 ++3.1.5-p5 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:50:30.732438221 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p4" ++#define MPFR_VERSION_STRING "3.1.5-p5" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 +@@ -1452,7 +1452,7 @@ + struct printf_spec spec) + { + char *str; +- long total; ++ unsigned int total; /* can hold the sum of two non-negative int's + 1 */ + int uppercase; + + /* WARNING: left justification means right space padding */ +@@ -1645,43 +1645,43 @@ + + /* compute the number of characters to be written verifying it is not too + much */ ++ ++#define INCR_TOTAL(v) \ ++ do { \ ++ MPFR_ASSERTD ((v) >= 0); \ ++ if (MPFR_UNLIKELY ((v) > INT_MAX)) \ ++ goto error; \ ++ total += (v); \ ++ if (MPFR_UNLIKELY (total > INT_MAX)) \ ++ goto error; \ ++ } while (0) ++ + total = np->sign ? 1 : 0; +- total += np->prefix_size; +- total += np->ip_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->ip_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->prefix_size); ++ INCR_TOTAL (np->ip_size); ++ INCR_TOTAL (np->ip_trailing_zeros); ++ MPFR_ASSERTD (np->ip_size + np->ip_trailing_zeros >= 1); + if (np->thousands_sep) + /* ' flag, style f and the thousands separator in current locale is not + reduced to the null character */ +- total += (np->ip_size + np->ip_trailing_zeros) / 3; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL ((np->ip_size + np->ip_trailing_zeros - 1) / 3); + if (np->point) + ++total; +- total += np->fp_leading_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->fp_trailing_zeros; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; +- total += np->exp_size; +- if (MPFR_UNLIKELY (total < 0 || total > INT_MAX)) +- goto error; ++ INCR_TOTAL (np->fp_leading_zeros); ++ INCR_TOTAL (np->fp_size); ++ INCR_TOTAL (np->fp_trailing_zeros); ++ INCR_TOTAL (np->exp_size); + + if (spec.width > total) + /* pad with spaces or zeros depending on np->pad_type */ + { + np->pad_size = spec.width - total; + total += np->pad_size; /* here total == spec.width, +- so 0 < total < INT_MAX */ ++ so 0 < total <= INT_MAX */ ++ MPFR_ASSERTD (total == spec.width); + } + ++ MPFR_ASSERTD (total > 0 && total <= INT_MAX); + return total; + + error: +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:50:30.736438175 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 19:57:01.971909970 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p4"; ++ return "3.1.5-p5"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:17:02.489704106 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:17:02.513703814 +0000 +@@ -0,0 +1 @@ ++printf-errno +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:17:02.513703814 +0000 +@@ -1 +1 @@ +-3.1.5-p5 ++3.1.5-p6 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p5" ++#define MPFR_VERSION_STRING "3.1.5-p6" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/printf.c mpfr-3.1.5-b/src/printf.c +--- mpfr-3.1.5-a/src/printf.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/printf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -40,7 +40,6 @@ + # endif /* HAVE___VA_COPY */ + #endif /* HAVE_VA_COPY */ + +-#include + #include "mpfr-impl.h" + + #ifdef _MPFR_H_HAVE_FILE +diff -Naurd mpfr-3.1.5-a/src/vasprintf.c mpfr-3.1.5-b/src/vasprintf.c +--- mpfr-3.1.5-a/src/vasprintf.c 2017-06-06 19:57:01.963910062 +0000 ++++ mpfr-3.1.5-b/src/vasprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -52,6 +52,8 @@ + #include /* for ptrdiff_t */ + #endif + ++#include ++ + #define MPFR_NEED_LONGLONG_H + #include "mpfr-intmax.h" + #include "mpfr-impl.h" +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 19:57:01.971909970 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:17:02.513703814 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p5"; ++ return "3.1.5-p6"; + } +diff -Naurd mpfr-3.1.5-a/tests/tprintf.c mpfr-3.1.5-b/tests/tprintf.c +--- mpfr-3.1.5-a/tests/tprintf.c 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/tprintf.c 2017-06-06 20:17:02.501703960 +0000 +@@ -26,6 +26,7 @@ + #include + #include + #include ++#include + + #include "mpfr-intmax.h" + #include "mpfr-test.h" +@@ -109,6 +110,33 @@ + } + + static void ++check_vprintf_overflow (const char *fmt, ...) ++{ ++ va_list ap; ++ int r, e; ++ ++ va_start (ap, fmt); ++ errno = 0; ++ r = mpfr_vprintf (fmt, ap); ++ e = errno; ++ va_end (ap); ++ ++ if (r != -1 ++#ifdef EOVERFLOW ++ || e != EOVERFLOW ++#endif ++ ) ++ { ++ putchar ('\n'); ++ fprintf (stderr, "Error in mpfr_vprintf(\"%s\", ...)\n" ++ "Got r = %d, errno = %d\n", fmt, r, e); ++ exit (1); ++ } ++ ++ putchar ('\n'); ++} ++ ++static void + check_invalid_format (void) + { + int i = 0; +@@ -167,8 +195,8 @@ + mpfr_set_ui (x, 1, MPFR_RNDN); + mpfr_nextabove (x); + +- check_vprintf_failure ("%Rb", x); +- check_vprintf_failure ("%RA %RA %Ra %Ra", x, x, x, x); ++ check_vprintf_overflow ("%Rb", x); ++ check_vprintf_overflow ("%RA %RA %Ra %Ra", x, x, x, x); + + mpfr_clear (x); + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:24:00.580702002 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:24:00.604701719 +0000 +@@ -0,0 +1 @@ ++tsprintf-setlocale +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:24:00.604701719 +0000 +@@ -1 +1 @@ +-3.1.5-p6 ++3.1.5-p7 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p6" ++#define MPFR_VERSION_STRING "3.1.5-p7" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:17:02.513703814 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:24:00.604701719 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p6"; ++ return "3.1.5-p7"; + } +diff -Naurd mpfr-3.1.5-a/tests/tsprintf.c mpfr-3.1.5-b/tests/tsprintf.c +--- mpfr-3.1.5-a/tests/tsprintf.c 2016-12-15 08:35:46.520430308 +0000 ++++ mpfr-3.1.5-b/tests/tsprintf.c 2017-06-06 20:24:00.596701813 +0000 +@@ -1273,13 +1273,12 @@ + int + main (int argc, char **argv) + { +- char *locale; + + tests_start_mpfr (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + /* currently, we just check with 'C' locale */ +- locale = setlocale (LC_ALL, "C"); ++ setlocale (LC_ALL, "C"); + #endif + + bug20111102 (); +@@ -1297,7 +1296,7 @@ + locale_da_DK (); + /* Avoid a warning by doing the setlocale outside of this #if */ + #endif +- setlocale (LC_ALL, locale); ++ setlocale (LC_ALL, "C"); + #endif + + if (getenv ("MPFR_CHECK_LIBC_PRINTF")) +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-06-06 20:31:35.919341495 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-06-06 20:31:35.943341213 +0000 +@@ -0,0 +1 @@ ++mpf-compat-signed +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-06-06 20:31:35.943341213 +0000 +@@ -1 +1 @@ +-3.1.5-p7 ++3.1.5-p8 +diff -Naurd mpfr-3.1.5-a/src/mpf2mpfr.h mpfr-3.1.5-b/src/mpf2mpfr.h +--- mpfr-3.1.5-a/src/mpf2mpfr.h 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/mpf2mpfr.h 2017-06-06 20:31:35.931341353 +0000 +@@ -93,15 +93,15 @@ + #undef mpf_div_2exp + #define mpf_div_2exp(x,y,z) mpfr_div_2exp(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_fits_slong_p +-#define mpf_fits_slong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_slong_p(x) mpfr_fits_slong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ulong_p + #define mpf_fits_ulong_p(x) mpfr_fits_ulong_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sint_p +-#define mpf_fits_sint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sint_p(x) mpfr_fits_sint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_uint_p + #define mpf_fits_uint_p(x) mpfr_fits_uint_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_sshort_p +-#define mpf_fits_sshort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) ++#define mpf_fits_sshort_p(x) mpfr_fits_sshort_p(x,MPFR_DEFAULT_RND) + #undef mpf_fits_ushort_p + #define mpf_fits_ushort_p(x) mpfr_fits_ushort_p(x,MPFR_DEFAULT_RND) + #undef mpf_get_str +@@ -113,7 +113,7 @@ + #undef mpf_get_ui + #define mpf_get_ui(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) + #undef mpf_get_si +-#define mpf_get_si(x) mpfr_get_ui(x,MPFR_DEFAULT_RND) ++#define mpf_get_si(x) mpfr_get_si(x,MPFR_DEFAULT_RND) + #undef mpf_inp_str + #define mpf_inp_str(x,y,z) mpfr_inp_str(x,y,z,MPFR_DEFAULT_RND) + #undef mpf_set_str +diff -Naurd mpfr-3.1.5-a/src/mpfr-impl.h mpfr-3.1.5-b/src/mpfr-impl.h +--- mpfr-3.1.5-a/src/mpfr-impl.h 2017-06-06 19:21:17.592843433 +0000 ++++ mpfr-3.1.5-b/src/mpfr-impl.h 2017-06-06 20:31:35.931341353 +0000 +@@ -342,11 +342,15 @@ + #define MPFR_FLAGS_DIVBY0 32 + #define MPFR_FLAGS_ALL 63 + +-/* Replace some common functions for direct access to the global vars */ +-#define mpfr_get_emin() (__gmpfr_emin + 0) +-#define mpfr_get_emax() (__gmpfr_emax + 0) +-#define mpfr_get_default_rounding_mode() (__gmpfr_default_rounding_mode + 0) +-#define mpfr_get_default_prec() (__gmpfr_default_fp_bit_precision + 0) ++/* Replace some common functions for direct access to the global vars. ++ The casts prevent these macros from being used as a lvalue (and this ++ method makes sure that the expressions have the correct type). */ ++#define mpfr_get_emin() ((mpfr_exp_t) __gmpfr_emin) ++#define mpfr_get_emax() ((mpfr_exp_t) __gmpfr_emax) ++#define mpfr_get_default_rounding_mode() \ ++ ((mpfr_rnd_t) __gmpfr_default_rounding_mode) ++#define mpfr_get_default_prec() \ ++ ((mpfr_prec_t) __gmpfr_default_fp_bit_precision) + + #define mpfr_clear_flags() \ + ((void) (__gmpfr_flags = 0)) +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-06-06 20:31:35.939341259 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p7" ++#define MPFR_VERSION_STRING "3.1.5-p8" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:24:00.604701719 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-06-06 20:31:35.943341213 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p7"; ++ return "3.1.5-p8"; + } +diff -Naurd mpfr-3.1.5-a/tests/mpf_compat.h mpfr-3.1.5-b/tests/mpf_compat.h +--- mpfr-3.1.5-a/tests/mpf_compat.h 2016-09-27 07:58:14.000000000 +0000 ++++ mpfr-3.1.5-b/tests/mpf_compat.h 2017-06-06 20:31:35.931341353 +0000 +@@ -20,16 +20,10 @@ + http://www.gnu.org/licenses/ or write to the Free Software Foundation, Inc., + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. */ + +-#if defined (__cplusplus) +-#include +-#else +-#include +-#endif + #include +-#include + +-#include "gmp.h" +-#include "mpfr.h" ++#include "mpfr-impl.h" ++ + #ifdef MPFR + #include "mpf2mpfr.h" + #endif +@@ -228,6 +222,16 @@ + exit (1); + } + ++ /* non-regression tests for bugs fixed in revision 11565 */ ++ mpf_set_si (x, -1); ++ MPFR_ASSERTN(mpf_fits_ulong_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_slong_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_uint_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sint_p (x) != 0); ++ MPFR_ASSERTN(mpf_fits_ushort_p (x) == 0); ++ MPFR_ASSERTN(mpf_fits_sshort_p (x) != 0); ++ MPFR_ASSERTN(mpf_get_si (x) == -1); ++ + /* clear all variables */ + mpf_clear (y); + mpf_clear (x); +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-07-21 09:17:42.675157685 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-07-21 09:17:42.699157421 +0000 +@@ -0,0 +1 @@ ++sincos-overflow +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-06-06 20:31:35.943341213 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-07-21 09:17:42.699157421 +0000 +@@ -1 +1 @@ +-3.1.5-p8 ++3.1.5-p9 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-06-06 20:31:35.939341259 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-07-21 09:17:42.699157421 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p8" ++#define MPFR_VERSION_STRING "3.1.5-p9" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/sin_cos.c mpfr-3.1.5-b/src/sin_cos.c +--- mpfr-3.1.5-a/src/sin_cos.c 2016-09-27 07:58:15.000000000 +0000 ++++ mpfr-3.1.5-b/src/sin_cos.c 2017-07-21 09:17:42.691157510 +0000 +@@ -350,10 +350,12 @@ + which reduces to T[k] = (2*i+2)*(2*i+3)*2^r-pp, + Q[k] = (2*i)*(2*i+1)*(2*i+2)*(2*i+3). */ + log2_nb_terms[k] = 1; +- mpz_set_ui (Q[k], (2 * i + 2) * (2 * i + 3)); ++ mpz_set_ui (Q[k], 2 * i + 2); ++ mpz_mul_ui (Q[k], Q[k], 2 * i + 3); + mpz_mul_2exp (T[k], Q[k], r); + mpz_sub (T[k], T[k], pp); +- mpz_mul_ui (Q[k], Q[k], (2 * i) * (2 * i + 1)); ++ mpz_mul_ui (Q[k], Q[k], 2 * i); ++ mpz_mul_ui (Q[k], Q[k], 2 * i + 1); + /* the next term of the series is divided by Q[k] and multiplied + by pp^2/2^(2r), thus the mult. factor < 1/2^mult[k] */ + mult[k] = mpz_sizeinbase (Q[k], 2) + 2 * r - size_ptoj[1] - 1; +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-06-06 20:31:35.943341213 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-07-21 09:17:42.699157421 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p8"; ++ return "3.1.5-p9"; + } +diff -Naurd mpfr-3.1.5-a/PATCHES mpfr-3.1.5-b/PATCHES +--- mpfr-3.1.5-a/PATCHES 2017-08-01 11:59:56.775365596 +0000 ++++ mpfr-3.1.5-b/PATCHES 2017-08-01 11:59:56.803365172 +0000 +@@ -0,0 +1 @@ ++mpf-compat-header +diff -Naurd mpfr-3.1.5-a/VERSION mpfr-3.1.5-b/VERSION +--- mpfr-3.1.5-a/VERSION 2017-07-21 09:17:42.699157421 +0000 ++++ mpfr-3.1.5-b/VERSION 2017-08-01 11:59:56.803365172 +0000 +@@ -1 +1 @@ +-3.1.5-p9 ++3.1.5-p10 +diff -Naurd mpfr-3.1.5-a/src/mpfr.h mpfr-3.1.5-b/src/mpfr.h +--- mpfr-3.1.5-a/src/mpfr.h 2017-07-21 09:17:42.699157421 +0000 ++++ mpfr-3.1.5-b/src/mpfr.h 2017-08-01 11:59:56.799365233 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 5 +-#define MPFR_VERSION_STRING "3.1.5-p9" ++#define MPFR_VERSION_STRING "3.1.5-p10" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.5-a/src/version.c mpfr-3.1.5-b/src/version.c +--- mpfr-3.1.5-a/src/version.c 2017-07-21 09:17:42.699157421 +0000 ++++ mpfr-3.1.5-b/src/version.c 2017-08-01 11:59:56.803365172 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.5-p9"; ++ return "3.1.5-p10"; + } +diff -Naurd mpfr-3.1.5-a/tests/mpf_compat.h mpfr-3.1.5-b/tests/mpf_compat.h +--- mpfr-3.1.5-a/tests/mpf_compat.h 2017-06-06 20:31:35.931341353 +0000 ++++ mpfr-3.1.5-b/tests/mpf_compat.h 2017-08-01 11:59:56.791365354 +0000 +@@ -22,7 +22,7 @@ + + #include + +-#include "mpfr-impl.h" ++#include "mpfr-test.h" + + #ifdef MPFR + #include "mpf2mpfr.h" diff --git a/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb b/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..73a29b2ebe3213083bca448245f1c4b0c1048cf9 --- /dev/null +++ b/easybuild/easyconfigs/g/GD/GD-2.66-foss-2016b-Perl-5.24.0.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'PerlModule' + +name = 'GD' +version = '2.66' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'https://github.com/lstein/Perl-GD' +description = """GD.pm - Interface to Gd Graphics Library""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/lstein/Perl-GD/archive/'] +sources = ['release_%(version_major)s_%(version_minor)s.tar.gz'] + +checksums = ['47a1388f3364e70dd2eaab072d127835'] + +dependencies = [ + ('Perl', '5.24.0'), + ('libgd', '2.2.4'), + ('libpng', '1.6.24'), + ('libjpeg-turbo', '1.5.0'), +] + +sanity_check_paths = { + 'files': ['bin/bdf2gdfont.pl', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/%(name)s.pm'], + 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/%(name)s'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.1.3-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/g/GDAL/GDAL-2.1.3-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..cfd1d42ed3755970fa636fec3fe8069664a8a2dc --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.1.3-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '2.1.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] +sources = [SOURCELOWER_TAR_XZ] +patches = ['GDAL-%(version)s_fix-uchar-definition.patch'] + +dependencies = [ + ('Python', '3.6.1'), + ('netCDF', '4.4.1.1'), + ('expat', '2.2.0'), + ('GEOS', '3.6.1', versionsuffix), + ('SQLite', '3.17.0'), + ('libxml2', '2.9.4'), + ('libpng', '1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('JasPer', '2.0.12'), + ('LibTIFF', '4.0.7'), + ('zlib', '1.2.11'), + ('cURL', '7.53.1'), + ('PCRE', '8.40'), +] + +configopts = '--with-expat=$EBROOTEXPAT --with-libz=$EBROOTLIBZ --with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF' +configopts += ' --with-xml2=$EBROOTLIBXML2 --with-geos=$EBROOTGEOS/bin/geos-config --with-jpeg=$EBROOTLIBJPEGMINTURBO' +configopts += ' --with-png=$EBROOTLIBPNG --with-sqlite3=$EBROOTSQLITE --with-jasper=$EBROOTJASPER' +configopts += ' --with-libtiff=$EBROOTLIBTIFF --with-pcre=$EBROOTPCRE --with-python=$EBROOTPYTHON/bin/python' + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0-intel-2017a-Python-2.7.13-HDF5-1.8.18.eb b/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0-intel-2017a-Python-2.7.13-HDF5-1.8.18.eb new file mode 100644 index 0000000000000000000000000000000000000000..26dd6f6835c8310d9eff195c24fdeb0424a05aae --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0-intel-2017a-Python-2.7.13-HDF5-1.8.18.eb @@ -0,0 +1,49 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '2.2.0' +hdf5_ver = '1.8.18' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5_ver + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] +sources = [SOURCELOWER_TAR_XZ] +patches = ['GDAL-%(version)s_fix-uchar-definition.patch'] + +dependencies = [ + ('Python', '2.7.13'), + ('netCDF', '4.4.1.1', '-HDF5-%s' % hdf5_ver), + ('expat', '2.2.0'), + ('GEOS', '3.6.1', '-Python-%(pyver)s'), + ('SQLite', '3.17.0'), + ('libxml2', '2.9.4'), + ('libpng', '1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('JasPer', '1.900.1'), + ('LibTIFF', '4.0.7'), + ('zlib', '1.2.11'), + ('cURL', '7.53.1'), + ('PCRE', '8.40'), +] + +configopts = '--with-expat=$EBROOTEXPAT --with-libz=$EBROOTLIBZ --with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF' +configopts += ' --with-xml2=$EBROOTLIBXML2 --with-geos=$EBROOTGEOS/bin/geos-config --with-jpeg=$EBROOTLIBJPEGMINTURBO' +configopts += ' --with-png=$EBROOTLIBPNG --with-sqlite3=$EBROOTSQLITE --with-jasper=$EBROOTJASPER' +configopts += ' --with-libtiff=$EBROOTLIBTIFF --with-pcre=$EBROOTPCRE --with-python=$EBROOTPYTHON/bin/python' + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b26815dc51b15b18bdf7fb37c0505b79d9b4709 --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '2.2.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] +sources = [SOURCELOWER_TAR_XZ] +patches = ['GDAL-%(version)s_fix-uchar-definition.patch'] + +dependencies = [ + ('Python', '3.6.1'), + ('netCDF', '4.4.1.1'), + ('expat', '2.2.0'), + ('GEOS', '3.6.1', versionsuffix), + ('SQLite', '3.17.0'), + ('libxml2', '2.9.4'), + ('libpng', '1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('JasPer', '2.0.12'), + ('LibTIFF', '4.0.7'), + ('zlib', '1.2.11'), + ('cURL', '7.53.1'), + ('PCRE', '8.40'), +] + +configopts = '--with-expat=$EBROOTEXPAT --with-libz=$EBROOTLIBZ --with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF' +configopts += ' --with-xml2=$EBROOTLIBXML2 --with-geos=$EBROOTGEOS/bin/geos-config --with-jpeg=$EBROOTLIBJPEGMINTURBO' +configopts += ' --with-png=$EBROOTLIBPNG --with-sqlite3=$EBROOTSQLITE --with-jasper=$EBROOTJASPER' +configopts += ' --with-libtiff=$EBROOTLIBTIFF --with-pcre=$EBROOTPCRE --with-python=$EBROOTPYTHON/bin/python' + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0_fix-uchar-definition.patch b/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0_fix-uchar-definition.patch new file mode 100644 index 0000000000000000000000000000000000000000..c876781483a14f69fa3abb3a463336ebf04205b4 --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.2.0_fix-uchar-definition.patch @@ -0,0 +1,11 @@ +add definition for uchar type that is not known by Intel compilers +author: Kenneth Hoste (HPC-UGent) +--- gdal-2.2.0/frmts/jpeg2000/jpeg2000_vsil_io.h.orig 2017-05-15 17:23:31.334324922 +0200 ++++ gdal-2.2.0/frmts/jpeg2000/jpeg2000_vsil_io.h 2017-05-15 17:23:52.134563207 +0200 +@@ -34,4 +34,6 @@ + + jas_stream_t *JPEG2000_VSIL_fopen(const char *filename, const char *mode); + ++#define uchar unsigned char ++ + #endif diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index 633ee3c7d8eb850ad5f036d4f2a001e5eff7d2e7..03c1be68ac2d6f9d24df37326b0606d00d90faa1 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb index b7ffec63fedcaaa7f369e1f5f0d64b94776a6848..62ae81e4f08f7e56c3e4a3a045e0904f76ff71b0 100644 --- a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb +++ b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb index 71eda7f1813fbc887abbff743b60b17eeb207b69..4bfe15af380c85dfc568066d3bdc0cc6e9f12f3f 100644 --- a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.6.1-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.6.1-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..786b191d554b54d96de2a51523f8f6d0eb112bcd --- /dev/null +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.6.1-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'GEOS' +version = '3.6.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://trac.osgeo.org/geos' +description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://download.osgeo.org/geos/'] +sources = [SOURCELOWER_TAR_BZ2] +patches = ['GEOS-%(version)s_fix-Python3.patch'] + +dependencies = [('Python', '3.6.1')] + +builddependencies = [('SWIG', '3.0.12', versionsuffix)] + +configopts = '--enable-python' + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.%s' % SHLIB_EXT, 'lib/libgeos.a', 'include/geos.h'], + 'dirs': ['lib/python%(pyshortver)s/site-packages/geos'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.6.1_fix-Python3.patch b/easybuild/easyconfigs/g/GEOS/GEOS-3.6.1_fix-Python3.patch new file mode 100644 index 0000000000000000000000000000000000000000..51d136b71dbd0b27b5bd1ca51bf1514006f55bad --- /dev/null +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.6.1_fix-Python3.patch @@ -0,0 +1,65 @@ +fix configuring with Python 3 +cfr. https://trac.osgeo.org/geos/ticket/774 +--- configure.orig 2016-12-29 17:33:15.229294313 +0100 ++++ configure 2016-12-29 18:33:27.822625611 +0100 +@@ -18329,7 +18329,7 @@ + if ${am_cv_python_version+:} false; then : + $as_echo_n "(cached) " >&6 + else +- am_cv_python_version=`$PYTHON -c "import sys; print sys.version[:3]"` ++ am_cv_python_version=`$PYTHON -c "import sys; print(sys.version[:3])"` + fi + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_python_version" >&5 + $as_echo "$am_cv_python_version" >&6; } +@@ -18348,7 +18348,7 @@ + if ${am_cv_python_platform+:} false; then : + $as_echo_n "(cached) " >&6 + else +- am_cv_python_platform=`$PYTHON -c "import sys; print sys.platform"` ++ am_cv_python_platform=`$PYTHON -c "import sys; print(sys.platform)"` + fi + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_python_platform" >&5 + $as_echo "$am_cv_python_platform" >&6; } +@@ -18362,7 +18362,7 @@ + if ${am_cv_python_pythondir+:} false; then : + $as_echo_n "(cached) " >&6 + else +- am_cv_python_pythondir=`$PYTHON -c "from distutils import sysconfig; print sysconfig.get_python_lib(0,0,prefix='$PYTHON_PREFIX')" 2>/dev/null || ++ am_cv_python_pythondir=`$PYTHON -c "from distutils import sysconfig; print(sysconfig.get_python_lib(0,0,prefix='$PYTHON_PREFIX'))" 2>/dev/null || + echo "$PYTHON_PREFIX/lib/python$PYTHON_VERSION/site-packages"` + fi + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_python_pythondir" >&5 +@@ -18379,7 +18379,7 @@ + if ${am_cv_python_pyexecdir+:} false; then : + $as_echo_n "(cached) " >&6 + else +- am_cv_python_pyexecdir=`$PYTHON -c "from distutils import sysconfig; print sysconfig.get_python_lib(1,0,prefix='$PYTHON_EXEC_PREFIX')" 2>/dev/null || ++ am_cv_python_pyexecdir=`$PYTHON -c "from distutils import sysconfig; print(sysconfig.get_python_lib(1,0,prefix='$PYTHON_EXEC_PREFIX'))" 2>/dev/null || + echo "${PYTHON_EXEC_PREFIX}/lib/python${PYTHON_VERSION}/site-packages"` + fi + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_python_pyexecdir" >&5 +@@ -18448,19 +18448,21 @@ + # Check for Python library path + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for Python library path" >&5 + $as_echo_n "checking for Python library path... " >&6; } +- for i in "$base_python_path/lib/python$PYTHON_VERSION/config/" "$base_python_path/lib/python$PYTHON_VERSION/" "$base_python_path/lib/python/config/" "$base_python_path/lib/python/" "$base_python_path/" "$base_python_path/libs/" ; do +- python_path=`find $i -name libpython$PYTHON_VERSION.* -print 2> /dev/null | sed "1q"` ++ for i in "$base_python_path/lib/python$PYTHON_VERSION/config/" "$base_python_path/lib/python$PYTHON_VERSION/" "$base_python_path/lib/python/config/" "$base_python_path/lib/python/" "$base_python_path/" "$base_python_path/libs/" "$base_python_path/lib/" ; do ++ python_path=`find $i -name libpython$PYTHON_VERSION*.so* -print 2> /dev/null | sed "1q"` + if test -n "$python_path" ; then + break + fi + done ++ ++ lpython_name=`python -c "import os; print(os.path.split(\"$python_path\")[1].split(\".so\")[0].split(\"lib\")[1])"` + python_path=`echo $python_path | sed "s,/libpython.*$,,"` + { $as_echo "$as_me:${as_lineno-$LINENO}: result: $python_path" >&5 + $as_echo "$python_path" >&6; } + if test -z "$python_path" ; then + as_fn_error $? "cannot find Python library path" "$LINENO" 5 + fi +- PYTHON_LDFLAGS="-L$python_path -lpython$PYTHON_VERSION" ++ PYTHON_LDFLAGS="-L$python_path -l$lpython_name" + + # + python_site=`echo $base_python_path | sed "s/config/site-packages/"` diff --git a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb index 8d11408e6b409d925cbc491e07f80055bf25aea2..f2c4bc1afd4f4da45e840dc8841b2466aadb6c84 100644 --- a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -25,7 +25,7 @@ dependencies = [ files_to_copy = [(['gfold'], 'bin'), 'README', 'doc'] parallel = 1 - + sanity_check_paths = { 'files': ['bin/gfold'], 'dirs': [], diff --git a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb index 3b289b47ea9914a160adf65a4256f4d77c03f718..4f13bddcdc41e358345479f131dfa4047612ad64 100644 --- a/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb +++ b/easybuild/easyconfigs/g/GFOLD/GFOLD-1.1.4-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -25,7 +25,7 @@ dependencies = [ files_to_copy = [(['gfold'], 'bin'), 'README', 'doc'] parallel = 1 - + sanity_check_paths = { 'files': ['bin/gfold'], 'dirs': [], diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb index b6ac9d8f9f40a4e1baacf2880e6efa1012f69abc..0260a39483a9f9bbef8d7b92aba76dd79667a66f 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -21,7 +21,10 @@ builddependencies = [('cURL', '7.33.0')] # make sure unzip works, zipped sources may contain some 'corruption', # e.g. "linux64/: ucsize 306 <> csize 0 for STORED entry" -sources = [('%(version)s.source.zip', 'unzip -qq %s || /bin/true')] +sources = [{ + 'filename': '%(version)s.source.zip', + 'extract_cmd': "unzip -qq %s || /bin/true", +}] # e.g. http://www.mersenne.info/gimps/p95v279.source.zip source_urls = ['http://www.mersenne.info/%(namelower)s'] diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb index 55fa61353fedc028662d277c3cb727e790c79cdf..271972fd7f82386e9887fef95fa917c6b007af6d 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/GL2PS/GL2PS-1.4.0-intel-2017a.eb b/easybuild/easyconfigs/g/GL2PS/GL2PS-1.4.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a2bcb6dc0299ba443ae487126618de6b0a2a232e --- /dev/null +++ b/easybuild/easyconfigs/g/GL2PS/GL2PS-1.4.0-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'CMakeMake' + +name = 'GL2PS' +version = '1.4.0' + +homepage = 'http://www.geuz.org/gl2ps/' +description = """GL2PS: an OpenGL to PostScript printing library""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://geuz.org/gl2ps/src/'] +sources = [SOURCELOWER_TGZ] + +builddependencies = [ + ('CMake', '3.8.1'), +] + +dependencies = [ + ('X11', '20170314'), + ('Mesa', '17.0.2'), + ('libGLU', '9.0.0'), + ('freeglut', '3.0.0'), + ('libpng', '1.6.29'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['include/gl2ps.h', 'lib/libgl2ps.so'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb index 8ad521809b871d0804a7307f3c3a5046962699fd..9224bccf7f9b8dd1d543b6f61a369715bbb1a7c6 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb index e4aa1f5c2e294bbdbabfebdc4a4f594a7d4248e3..90a24de0cf2fc13875b1ca78bb61f65bfe5777f0 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Thekla Loizou diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb index c0b7a972313254d66bd85670cf82be743f8ef994..b2cdf2a95f1cbd850125ba94588cc1cc0196347e 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] +source_urls = [GNU_SOURCE] dependencies = [ ('GMP', '5.1.1'), diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb index 4525095b9713d7977c1de7b43048305b85c3e7da..7eebd2e1b565a8ab349d0977552378ef8819783f 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb @@ -11,7 +11,7 @@ written in ANSI C and organized in the form of a callable library.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] +source_urls = [GNU_SOURCE] dependencies = [ ('GMP', '5.1.1'), diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb index aabef669ba99bc23084ad1d9cde7223e5c8fb4e3..23cdf9bdeb275ab84ab84f050dc5e0d5c59889f8 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'ictce', 'version': '6.2.5'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] +source_urls = [GNU_SOURCE] dependencies = [ ('GMP', '5.1.1'), diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.55-foss-2015a.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.55-foss-2015a.eb index 270390d86d0f95a6ec3dfa8196932722363dface..d0490da3518ff24ab79845ca0a351f71118f0f8d 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.55-foss-2015a.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.55-foss-2015a.eb @@ -13,7 +13,7 @@ description = """The GLPK (GNU Linear Programming Kit) package is intended for toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s/'] +source_urls = [GNU_SOURCE] dependencies = [('GMP', '6.0.0a', '', ('GCC', '4.9.2'))] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.55-intel-2015a.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.55-intel-2015a.eb index aef6e26abf232d19c6462d7d527e39780fa8be6d..97c634c6e3c8d6cbab897b7fab5c885d6475a0dd 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.55-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.55-intel-2015a.eb @@ -13,7 +13,7 @@ description = """The GLPK (GNU Linear Programming Kit) package is intended for toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s/'] +source_urls = [GNU_SOURCE] dependencies = [('GMP', '6.0.0a', '', ('GCC', '4.9.2'))] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.58-foss-2016a.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.58-foss-2016a.eb index d5751eec2af50e198a9d59fbc626bff4d7f35a9e..1923d225b7e3e8810a666a5af933a775a585a354 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.58-foss-2016a.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.58-foss-2016a.eb @@ -13,7 +13,7 @@ description = """The GLPK (GNU Linear Programming Kit) package is intended for toolchain = {'name': 'foss', 'version': '2016a'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s/'] +source_urls = [GNU_SOURCE] dependencies = [('GMP', '6.1.0')] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.58-intel-2016a.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.58-intel-2016a.eb index 07ed2e7997e4168479261f7ee12a4c23546b51e7..391a5af632d677e7b2ad29b67fdf15a1ad6310fd 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.58-intel-2016a.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.58-intel-2016a.eb @@ -13,7 +13,7 @@ description = """The GLPK (GNU Linear Programming Kit) package is intended for toolchain = {'name': 'intel', 'version': '2016a'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s/'] +source_urls = [GNU_SOURCE] dependencies = [('GMP', '6.1.0')] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.60-intel-2016b.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.60-intel-2016b.eb index 66b0f5b8f26455ebcf27155b679333939bb7b2b7..c1d050fb81a24fa41060718577b40748c28f7613 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.60-intel-2016b.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.60-intel-2016b.eb @@ -13,7 +13,7 @@ description = """The GLPK (GNU Linear Programming Kit) package is intended for toolchain = {'name': 'intel', 'version': '2016b'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s/'] +source_urls = [GNU_SOURCE] dependencies = [('GMP', '6.1.1')] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.61-intel-2017a.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.61-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..634ca00ce6ff4b434316312927ecee786188db6f --- /dev/null +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.61-intel-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'GLPK' +version = '4.61' + +homepage = 'https://www.gnu.org/software/glpk/' +description = """The GLPK (GNU Linear Programming Kit) package is intended for + solving large-scale linear programming (LP), + mixed integer programming (MIP), and other related problems. + It is a set of routines written in ANSI C + and organized in the form of a callable library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('GMP', '6.1.2')] + +configopts = "--with-gmp" + +sanity_check_paths = { + 'files': ['bin/glpsol', 'include/glpk.h'] + + ['lib/libglpk.%s' % x for x in [SHLIB_EXT, 'a']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.48.2-foss-2015a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.48.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3d7e4ba8223820852d8bf489db78fb2cd18ec5ab --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.48.2-foss-2015a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.48.2' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.8'), + ('libxml2', '2.9.3'), + ('PCRE', '8.37'), +] + +builddependencies = [('Python', '2.7.9')] + +configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --enable-static --enable-shared " +configopts += "--disable-systemtap --with-pcre=system" + +postinstallcmds = ["sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] + +sanity_check_paths = { + 'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..52fb7942b907e35ff59decfd0d40e09fe5fba337 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.52.0-foss-2017a.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.52.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] +checksums = [ + '4578e3e077b1b978cafeec8d28b676c680aba0c0475923874c4c993403df311a', # glib-2.52.0.tar.xz +] + +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.8.1'), + ('libxml2', '2.9.4'), + ('PCRE', '8.40'), + ('util-linux', '2.29.2'), +] + +builddependencies = [('Python', '2.7.13')] + +configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --disable-systemtap " +configopts += "--enable-static --enable-shared" + +postinstallcmds = ["sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] + +sanity_check_paths = { + 'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb index d00a71f2d8bd425c7a78138b2de9d2b798288e7c..4da7b9cac0e4a73ef8d3bb9a3d620dfb4bceb258 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb index 3994be6bc47fdc448ebce007c7beb0faf83329a1..01026712def799185811e6881592d9785e6f743a 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb index abea13b1cef365362c8817677513450902960d8e..48d2d898a59d639b46bd9884ce7e85f9fbc542ca 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb index f2525337c6c64abecb776d96f5330f93e771125a..a93eff9b9bdb8e3b643aac7b451aa089c5da7edb 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb index 6b8d559ccc265ffb588a12db8d650a0767e1c348..7af870d276bd442429b0d160581f6f34e6608f39 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.1-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..6b309e5f37d75da3b1971adde40d48623077d7fa --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.1-GCCcore-5.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.1' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +builddependencies = [ + ('binutils', '2.26'), + ('Autotools', '20150215'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..579e3410d39a89b1cfab9807ebb5355a40785e03 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.2-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.2' + +homepage = 'http://gmplib.org/' + +description = """ + GMP is a free library for arbitrary precision arithmetic, operating on signed + integers, rational numbers, and floating point numbers. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] +checksums = ['5275bb04f4863a13516b2f39392ac5e272f5e1bb8057b18aec1c9b79d73d8fb2'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMT/GMT-5.4.1-intel-2017a.eb b/easybuild/easyconfigs/g/GMT/GMT-5.4.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ae0c637c6cb51dae3d8e2a65597e8ab595bc8db --- /dev/null +++ b/easybuild/easyconfigs/g/GMT/GMT-5.4.1-intel-2017a.eb @@ -0,0 +1,61 @@ +easyblock = "CMakeMake" + +name = "GMT" +version = "5.4.1" + +homepage = 'http://gmt.soest.hawaii.edu/' +description = """GMT is an open source collection of about 80 command-line tools for manipulating + geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, + etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps + to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another + 40 more specialized and discipline-specific tools. """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +gshhg_ver = '2.3.6' +dcw_ver = '1.1.2' +sources = [ + 'gmt-%(version)s-src.tar.xz', + # coastlines, rivers, and political boundaries + 'gshhg-gmt-%s.tar.gz' % gshhg_ver, + # country polygons + 'dcw-gmt-%s.tar.gz' % dcw_ver, +] + +# 'http://gmt.soest.hawaii.edu/files/download?name=' needs flash enabled browser +source_urls = [ + 'ftp://ftp.soest.hawaii.edu/gmt', + 'ftp://ftp.soest.hawaii.edu/gmt/legacy', + 'ftp://ftp.soest.hawaii.edu/gshhg', + 'ftp://ftp.soest.hawaii.edu/gshhg/legacy', + 'ftp://ftp.soest.hawaii.edu/dcw', + 'ftp://ftp.soest.hawaii.edu/dcw/legacy', +] + +patches = ['GMT-5.1.2_netCDF.patch'] + +builddependencies = [('CMake', '3.8.1')] + +dependencies = [ + ('PCRE', '8.40'), + ('GDAL', '2.1.3', '-Python-2.7.13'), + ('FFTW', '3.3.6'), + ('netCDF', '4.4.1.1'), + ('Ghostscript', '9.21'), + ('cURL', '7.53.1'), + ('zlib', '1.2.11'), +] + +configopts = '-DCOPY_GSHHG=TRUE -DGSHHG_ROOT=%%(builddir)s/gshhg-gmt-%s ' % gshhg_ver +configopts += '-DCOPY_DCW=TRUE -DDCW_ROOT=%%(builddir)s/dcw-gmt-%s ' % dcw_ver + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/gmt', 'bin/isogmt'], + 'dirs': [] +} + +modextrapaths = {'GMTHOME': ''} + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.52.0-intel-2017a.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.52.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..804872f657acba88ed25a5be93d37fbf78f20688 --- /dev/null +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.52.0-intel-2017a.eb @@ -0,0 +1,47 @@ +easyblock = 'ConfigureMake' + +name = 'GObject-Introspection' +version = '1.52.0' + +homepage = 'https://wiki.gnome.org/GObjectIntrospection/' +description = """GObject introspection is a middleware layer between C libraries + (using GObject) and language bindings. The C library can be scanned at + compile time and generate a metadata file, in addition to the actual + native C library. Then at runtime, language bindings can read this + metadata and automatically provide bindings to call into the C library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('Python', '2.7.13'), + ('GLib', '2.52.0'), + ('libffi', '3.2.1'), +] + +builddependencies = [ + ('Autotools', '20150215'), + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + ('cairo', '1.14.8'), +] + +preconfigopts = "env GI_SCANNER_DISABLE_CACHE=true " + +# avoid using hard-coded path to 'python' in shebang of scripts +buildopts = "PYTHON=python" + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + + ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + 'dirs': ['include', 'share'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb index f72c224d321db625c991877e842a7b1002c86c7a..cf07fe6921d38f139a329e9b464a355acfca596e 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb index 1a85f392c79e1103591ef41e40e8698c87608888..4b007038bb92ba0f8921acf73bc55dc1eb3f3860 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016-foss-2016b-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb index 9fc85b8f3ee85eaa2caa0a0dbab1c0a80cf75554..392a977903f713ec186e7ebdf36523f8cf361e71 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.1-foss-2017a-PLUMED.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb index 8ad8f765c7535c301873de1566a7b3ee1eac5c76..b2f4ae93aa4a60cd8b7c200d2359bd6a7094c724 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.2-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb new file mode 100644 index 0000000000000000000000000000000000000000..38bb91bb4ef29db2618461fd4e350be92fa03e85 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2016b-GPU-enabled.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# Authors:: +# * Wiktor Jurkowski +# * Fotis Georgatos +# * George Tsouloupas +# * Kenneth Hoste +# * Adam Huffman +# License:: MIT/GPL +## + +name = 'GROMACS' +version = '2016.3' +versionsuffix = '-GPU-enabled' + +homepage = 'http://www.gromacs.org' +description = """ +GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. + +This is a GPU enabled build, containing both MPI and threadMPI builds. +""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = [ + '7bf00e74a9d38b7cef9356141d20e4ba9387289cbbfd4d11be479ef932d77d27', # gromacs-2016.3.tar.gz +] + +patches = [ + 'GROMACS-%(version)s_amend_search_for_nvml_lib.patch', +] + +dependencies = [ + ('CUDA', '8.0.61_375.26'), +] + +builddependencies = [ + ('CMake', '3.7.2'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb index c3f26a2915cb80eaf880785f60d6225ef9aa8d9f..42fbccf9075944206c4468c10aa33633534165d2 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb new file mode 100644 index 0000000000000000000000000000000000000000..070615703c309443ddcce91d409c9048ed62263e --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-goolfc-2017.01.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, +# Ghent University / The Francis Crick Institute +# Authors:: +# * Wiktor Jurkowski +# * Fotis Georgatos +# * George Tsouloupas +# * Kenneth Hoste +# * Adam Huffman +# License:: MIT/GPL +## + +name = 'GROMACS' +version = '2016.3' + +homepage = 'http://www.gromacs.org' +description = """ +GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. + +This is a GPU enabled build, containing both MPI and threadMPI builds. +""" + +toolchain = {'name': 'goolfc', 'version': '2017.01'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'GROMACS-%(version)s_amend_search_for_nvml_lib.patch', +] + +builddependencies = [ + ('CMake', '3.7.1'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb index edcd456df0402fbf1c8be4e5547b12548311fb81..c0b9b8febe13d2744c11d7919855006e2d298b63 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2016 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, # Ghent University / The Francis Crick Institute diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch new file mode 100644 index 0000000000000000000000000000000000000000..b30455aeccdfdedaf79df38128a9adb1a8d3da2c --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-2016.3_amend_search_for_nvml_lib.patch @@ -0,0 +1,14 @@ +# The NVML library location depends on driver version on Ubuntu +# Åke Sandgren, 2016-10-14 +diff -ru gromacs-2016.orig/cmake/FindNVML.cmake gromacs-2016/cmake/FindNVML.cmake +--- gromacs-2016.orig/cmake/FindNVML.cmake 2016-07-09 02:55:38.000000000 +0200 ++++ gromacs-2016/cmake/FindNVML.cmake 2016-10-14 21:44:08.143648879 +0200 +@@ -96,7 +96,7 @@ + # reasonably set GPU_DEPLOYMENT_KIT_ROOT_DIR to the value they + # passed to the installer, or the root where they later found the + # kit to be installed. Below, we cater for both possibilities. +- set( NVML_LIB_PATHS /usr/lib64 ) ++ set( NVML_LIB_PATHS /usr/lib64 /usr/lib64/nvidia /usr/lib/nvidia-367 /usr/lib/nvidia-375) + if(GPU_DEPLOYMENT_KIT_ROOT_DIR) + list(APPEND NVML_LIB_PATHS + "${GPU_DEPLOYMENT_KIT_ROOT_DIR}/src/gdk/nvml/lib" diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb index 6cbe4c8289014f42fac1b191849a94f64d2930d4..fbece4acc1590f2ebe889553a8c44789f819f6a8 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-3.3.3-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index 85881f3e3835a22aaf2e6e79fe5896d44df11011..483e81edc4c035db7c28396c8285aab26ebfe8b7 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index 8dac71d95216c28a5a927d20854add1944d6ea4a..f8e9652452c1ec302e2e78534340302ff57b136e 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index 11decefff106081c177f200487a28379c196f2c6..e0466197908d888ca21bcca3174f7c7aad02f044 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index 7bc4e4ad920c71c932389dbdd5944a7b87478fe6..2336d79f1fbe5f210ddbae6094703bc63e9d8f7b 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index eaada284fdb7850f96410288f1a0c528be0f89c6..cf451c2390191d3e0e4c95c71834f1c2bd2b1321 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index 95002c6f561b7891b293d299e41186b72b4e0153..21de51a9481a4b2e1db6560f15cc6f8353cb8765 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index 4e7a111b3a9c1d93b26ab9c83946a71065c78a39..6060f72245f85eb7cdfa6a2293d7d8fd4c12e2bc 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index 1d36cf509958ea466373b782584c9325b35ab905..ae821baece595679d54bfba3b8221811a10bfbcd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb index adf36de39874e48c24e0568e79667b9750cff661..48b16c52ff3c4e010c31cb34f680d67cd3c1acd2 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb index f52ab6e342b9da927bde3c1efaf6cc6d4a9b7fea..0456808f1024e87c7f8ac4548b7fd71183344dc5 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-mpi.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb index 3f046b21296946a718cbfbd1094ec16cbbd7a9f6..cce424c9ba529f62d6033184df6d107ba8153cb7 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayIntel-2015.11-mpi.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb index b6b649c1ecd135e8afc5c5d206f659fffebf49ca..db4bdb854cea96f8b82e1258aa4b01c95c1737b9 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb index 0914af5ffd815e91143a287a1abd34f961e81a31..fc540e8f19d861a5eafdce948e27a3ed1db71699 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb index f0da8f6053684f7d374eb64e64ba63dba439904c..dab6da36ba120b1b2f163259838185ad11e94ea9 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb index c7e0273a3e5ed97fdbeb84f1d2307bda240829c5..1e5465d878da057654b7a8f01a9e449a24190d6e 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.5-intel-2015a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb index 69bf5a5d408861adbf96d633d707b818b1167c81..a45d822382a9ab662bee6019cb4e17b5212af9eb 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.7-intel-2015a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb index 327b4714267942d1528d9806e7e031ad25ad808e..9fd003a18d8bc839310927dd7ec72c1b5b8af7fd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.1-intel-2015b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb index db2a991381fc6d468619fca85d1b1bde8e38eb35..100f817f32b2532a62d0e82a93e0b62c90b7110f 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb index e699b7dd9b16de6880d2666bd00d63a0ce3dcd9c..0f65d23d034c7337031c699fa6ab75bd485d84d2 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb index 3c8fdff8cfc702fb737d846008bef3fc75111f16..9c98d6f5460c886586018ade332409c0d1794bb6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2016a-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb index 5f20cd92b4bf2c8c85c81b760153cf55f5205013..7292972b006fde7feda5b8d1ab5d1f442d840e1f 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-goolf-1.7.20-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb index e85182e185cfee1d3320dd3cbad7d468c23af9b9..922df0412bb6d02786feb6edffa24883d1867f7a 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-dp.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb index 1d0b356a9e2a620c6339cd94c4bc81e843aaf3ae..6db4e0caa31d43ce3ba91413904162c44ab5f768 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb index 2e153e4c273ff746aa4738f9f7fa4009838071f3..ed0de02f0d2c7ba392df104550f3f1786789e711 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-hybrid.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb index ab660ee95506e4e89bff259094dc42a37736ac03..a3faf1446911205a6c12c88183c192635aaf89f1 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.4-foss-2016b-mt.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ diff --git a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb index cd7029cdae85e7c037243b23290e387c3014fcee..14cf03acd4fcb48979ed4c9ad938266a9cdd9893 100644 --- a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb +++ b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-openmp.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb index 2b1345c99b330dbed8db36a322dcc946664c9f9a..372e30a64a0b27ec79d6c4e9b4080b2c3cd848a7 100644 --- a/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb +++ b/easybuild/easyconfigs/g/GROMOS++/GROMOS++-1.0.2211-goolf-1.5.14-serial.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.7.20.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.7.20.eb index 723ea8a3096e1f1890d78852589126f8dc03e877..b2099121ee52d0f80ea88b7284ff45e01fc8cbfd 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.7.20.eb @@ -11,7 +11,7 @@ description = """The GNU Scientific Library (GSL) is a numerical library for C a toolchain = {'name': 'goolf', 'version': '1.7.20'} toolchainopts = {'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..4ea2f3d1a35e51e96aea068458f61feb86304292 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-2.4-GCCcore-6.4.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '2.4' + +homepage = 'http://www.gnu.org/software/gsl/' + +description = """ + The GNU Scientific Library (GSL) is a numerical library for C and C++ + programmers. The library provides a wide range of mathematical routines + such as random number generators, special functions and least-squares fitting. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb index d2f8ea38ad71b473812f242533750c0df1ce58eb..a06a2799fd3a1b252ffec900e1e60a9baf5906dc 100644 --- a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb b/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb index 69e22e6cabb7feafcdee8657bd8470a6173db972..df06c730095e76114a813ba6c9d9ec715ac5c3fc 100644 --- a/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb +++ b/easybuild/easyconfigs/g/GTOOL/GTOOL-0.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/g/GapFiller/GapFiller-2.1.1-intel-2017a.eb b/easybuild/easyconfigs/g/GapFiller/GapFiller-2.1.1-intel-2017a.eb index 4e408b39dd8f6f54baf04257485b5b9932a95611..28fa1604acb006890b36aa3f78d4160b38a5c3e7 100644 --- a/easybuild/easyconfigs/g/GapFiller/GapFiller-2.1.1-intel-2017a.eb +++ b/easybuild/easyconfigs/g/GapFiller/GapFiller-2.1.1-intel-2017a.eb @@ -22,8 +22,10 @@ buildopts = 'bin_PROGRAMS=GapFiller ' buildopts += 'GapFiller_CFLAGS="$CFLAGS $LDFLAGS -lz" GapFiller_CXXFLAGS="$CXXFLAGS $LDFLAGS -lz"' installopts = 'bin_PROGRAMS=GapFiller ' +postinstallcmds = ["cp -a README %(installdir)s"] + sanity_check_paths = { - 'files': ['bin/GapFiller'], + 'files': ['bin/GapFiller', 'README'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb b/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb index 22ad6d392a1b5c2e03a408932808d26b3a76d844..b56c68075d44e6baaf8c713465c0b4f87846cfe1 100644 --- a/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb +++ b/easybuild/easyconfigs/g/Givaro/Givaro-4.0.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipe; see https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipe; see https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2016 Riccardo Murri # Authors:: Riccardo Murri diff --git a/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.25-intel-2017a.eb b/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.25-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e1b8b64f3a06aaf85eebb75e6e8a06e1d36b5261 --- /dev/null +++ b/easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.25-intel-2017a.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'GraphicsMagick' +version = '1.3.25' + +homepage = 'http://www.graphicsmagick.org/' +description = """GraphicsMagick is the swiss army knife of image processing.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [ + SOURCEFORGE_SOURCE, + 'ftp://ftp.graphicsmagick.org/pub/GraphicsMagick/%(version_major_minor)s/', +] +sources = [SOURCE_TAR_GZ] + +patches = ['%(name)s-%(version)s_intel.patch'] + +builddependencies = [ + ('libtool', '2.4.6'), +] + +dependencies = [ + ('X11', '20170314'), + ('bzip2', '1.0.6'), + ('freetype', '2.7.1', '-libpng-1.6.29'), + ('libpng', '1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('LibTIFF', '4.0.7'), + ('libxml2', '2.9.4'), + ('XZ', '5.2.3'), + ('zlib', '1.2.11'), + ('Ghostscript', '9.21'), +] + +modextrapaths = {'CPATH': ['include/GraphicsMagick']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-5.4.0.eb b/easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f4fa3e2f0c6d1be4ff2dadfc48e4f9551c47825 --- /dev/null +++ b/easybuild/easyconfigs/g/Guile/Guile-1.8.8-GCCcore-5.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'Guile' +version = '1.8.8' + +homepage = 'http://www.gnu.org/software/guile' +description = """Guile is the GNU Ubiquitous Intelligent Language for Extensions, + the official extension language for the GNU operating system.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libtool', '2.4.6'), + ('GMP', '6.1.1'), + ('libunistring', '0.9.6'), + ('pkg-config', '0.29.1'), + ('libffi', '3.2.1'), + ('libreadline', '6.3'), +] + +builddependencies = [('binutils', '2.26', '', True)] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/Guile/Guile-2.0.11-foss-2016a.eb b/easybuild/easyconfigs/g/Guile/Guile-2.0.11-foss-2016a.eb index 94a0abd7af544a02bc574eb0dd7822573baf1684..ec7a8d05872afd64e438db872d69b7c563730d40 100644 --- a/easybuild/easyconfigs/g/Guile/Guile-2.0.11-foss-2016a.eb +++ b/easybuild/easyconfigs/g/Guile/Guile-2.0.11-foss-2016a.eb @@ -16,7 +16,7 @@ builddependencies = [('Autotools', '20150215')] dependencies = [ ('libunistring', '0.9.3'), ('libffi', '3.2.1'), - ('gc', '7.4.4'), + ('gc', '7.4.4'), ('GMP', '6.1.0'), ] diff --git a/easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..395d150d5b9faa0b711d75055d101f049cfc335a --- /dev/null +++ b/easybuild/easyconfigs/g/Guile/Guile-2.2.2-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'Guile' +version = '2.2.2' + +homepage = 'https://www.gnu.org/software/guile/' + +description = """ + Guile is a programming language, designed to help programmers create flexible + applications that can be extended by users or other programmers with plug-ins, + modules, or scripts. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3d9b94183b19f04dd4317da87beedafd1c947142f3d861ca1f0224e7a75127ee'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), +] + +dependencies = [ + ('gc', '7.6.0'), + ('GMP', '6.1.2'), + ('libffi', '3.2.1'), + ('libunistring', '0.9.7'), +] + +sanity_check_paths = { + 'files': ['bin/guild', 'bin/guile', 'bin/guile-config', + 'bin/guile-snarf', 'bin/guile-tools', + 'include/guile/%(version_major_minor)s/libguile.h', + 'lib/libguile-%(version_major_minor)s.a', + 'lib/libguile-%%(version_major_minor)s.%s' % SHLIB_EXT], + 'dirs': ['include/guile/%(version_major_minor)s/libguile', + 'lib/guile/%(version_major_minor)s/ccache'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb b/easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d656235b6cabccefdcf7b09dfd1a40b8449dfbee --- /dev/null +++ b/easybuild/easyconfigs/g/g2log/g2log-1.0-foss-2016b.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'g2log' +version = '1.0' + +homepage = 'https://sites.google.com/site/kjellhedstrom2//g2log-efficient-background-io-processign-with-c11' +description = """g2log, efficient asynchronous logger using C++11""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://bitbucket.org/KjellKod/g2log/get/'] +sources = ['version-%(version)s.tar.gz'] + +checksums = ['2cd2d9cfa0cf71c80a546cde1a25f19f6b7fddf610f7cbb30a67bb81dadb7026'] + +preconfigopts = 'unzip ../3rdParty/gtest/gtest-1.6.0__stripped.zip -d ../3rdParty/gtest/ &&' +preinstallopts = 'mkdir %(installdir)s/lib && cp lib*.a %(installdir)s/lib ||' + +builddependencies = [ + ('CMake', '3.7.2'), +] + +start_dir = 'g2log' +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/liblib_g2logger.a', 'lib/liblib_activeobject.a'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d8dbc1f532d05f4cdbfcefa428e153c2db07b86 --- /dev/null +++ b/easybuild/easyconfigs/g/gSOAP/gSOAP-2.8.48-GCCcore-6.3.0.eb @@ -0,0 +1,35 @@ +easyblock = "ConfigureMake" + +name = 'gSOAP' +version = '2.8.48' + +homepage = 'http://www.cs.fsu.edu/~engelen/soap.html' +description = """The gSOAP toolkit is a C and C++ software development toolkit for + SOAP and REST XML Web services and generic C/C++ XML data bindings. + The toolkit analyzes WSDLs and XML schemas (separately or as a combined set) and maps the XML schema types + and the SOAP/REST XML messaging protocols to easy-to-use and efficient C and C++ code. + It also supports exposing (legacy) C and C++ applications as XML Web services + by auto-generating XML serialization code and WSDL specifications. + Or you can simply use it to automatically convert XML to/from C and C++ data. + The toolkit supports options to generate pure ANSI C or C++ with or without STL.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +sources = ['%(namelower)s_%(version)s.zip'] +source_urls = ['https://downloads.sourceforge.net/project/gsoap%(version_major)s/gsoap-%(version_major_minor)s/'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('flex', '2.6.3'), +] + +dependencies = [('zlib', '1.2.11')] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/soapcpp2', 'bin/wsdl2h'], + 'dirs': ['include', 'lib'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index 39b5e35917c7af992bc2dc809c209dacad097823..b1ff3e1fdc3b4f3234071bb5ad21bbc61bc94edc 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index 75c54349b634738a13b171d721069ecc023cf03c..a78d2827af979c15ecdbeba59f1d8c8b8cdb9a3e 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa7d33f680742fe3d59a7ce74053033e1bbd0c31 --- /dev/null +++ b/easybuild/easyconfigs/g/gc/gc-7.6.0-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'gc' +version = '7.6.0' + +homepage = 'http://hboehm.info/gc/' + +description = """ + The Boehm-Demers-Weiser conservative garbage collector can be used as a + garbage collecting replacement for C malloc or C++ new. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [ + 'http://hboehm.info/gc/gc_source/', + 'https://github.com/ivmai/libatomic_ops/releases/download/v7.4.6/', +] +sources = [ + SOURCE_TAR_GZ, + 'libatomic_ops-7.4.6.tar.gz', +] +checksums = [ + 'a14a28b1129be90e55cd6f71127ffc5594e1091d5d54131528c24cd0c03b7d90', + '96e88ba450ae5fa10aa8e94e6b151a63ffbe47f8069574bd12da22ae80c686db', +] + +builddependencies = [ + ('binutils', '2.28'), +] + +preconfigopts = 'ln -s %(builddir)s/libatomic_ops*/ libatomic_ops && ' + +sanity_check_paths = { + 'files': ['include/gc.h', 'lib/libcord.a', 'lib/libcord.%s' % SHLIB_EXT, + 'lib/libgc.a', 'lib/libgc.%s' % SHLIB_EXT], + 'dirs': ['include/gc', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb b/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb index f4f2214acc709fcaf5abac1d8dd1c2c1de85cf2b..ff69d49387ebb0f065d45b58bdc4fe701dcadb64 100644 --- a/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb +++ b/easybuild/easyconfigs/g/gencore_variant_detection/gencore_variant_detection-1.0.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..4b03e02aeed7ffd0867e689353d8a46a72246895 --- /dev/null +++ b/easybuild/easyconfigs/g/geopy/geopy-1.11.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,22 @@ +easyblock = 'PythonPackage' + +name = 'geopy' +version = '1.11.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/geopy/geopy' +description = "geopy is a Python 2 and 3 client for several popular geocoding web services." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '3.6.1')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.8-GCCcore-5.4.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.8-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8875bae5877cef48336ba672765c0faa9faa13e4 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.8-GCCcore-5.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.8' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libxml2', '2.9.4'), + ('ncurses', '6.0'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.26', '', True)] + +configopts = '--without-emacs --with-libxml2-prefix=$EBROOTLIBXML2' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.8-foss-2015a.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.8-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..482c543fe82cd36e600b673048a85dc2ae6c14a5 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.8-foss-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.8' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libxml2', '2.9.3'), + ('ncurses', '5.9'), +] + +configopts = '--without-emacs --with-libxml2-prefix=$EBROOTLIBXML2' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gflags/gflags-2.1.2-foss-2016a.eb b/easybuild/easyconfigs/g/gflags/gflags-2.1.2-foss-2016a.eb index 9a10acf8809ca45473cfe9b2224b29129ee36936..5f269fd40d5afd99b9d726c2d22018fffdb24847 100644 --- a/easybuild/easyconfigs/g/gflags/gflags-2.1.2-foss-2016a.eb +++ b/easybuild/easyconfigs/g/gflags/gflags-2.1.2-foss-2016a.eb @@ -23,8 +23,8 @@ builddependencies = [ configopts = '-DBUILD_SHARED_LIBS=on -DBUILD_STATIC_LIBS=on' sanity_check_paths = { - 'files': ['bin/gflags_completions.sh'] + - ['lib/%s' % x for x in ['libgflags.%s' % SHLIB_EXT, + 'files': ['bin/gflags_completions.sh'] + + ['lib/%s' % x for x in ['libgflags.%s' % SHLIB_EXT, 'libgflags_nothreads.%s' % SHLIB_EXT, 'libgflags.a', 'libgflags_nothreads.a']] + ['include/gflags/gflags_completions.h'], 'dirs': [], diff --git a/easybuild/easyconfigs/g/gimkl/gimkl-2017a.eb b/easybuild/easyconfigs/g/gimkl/gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a390890a86779ad2b55d8cee4c956f86662f8cd3 --- /dev/null +++ b/easybuild/easyconfigs/g/gimkl/gimkl-2017a.eb @@ -0,0 +1,19 @@ +easyblock = "Toolchain" + +name = 'gimkl' +version = '2017a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain with Intel MPI and MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp = ('GCC', '5.4.0-2.26') + +dependencies = [ + comp, + ('impi', '2017.1.132', '', comp), + ('imkl', '2017.1.132', '', ('gimpi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gimpi/gimpi-2017a.eb b/easybuild/easyconfigs/g/gimpi/gimpi-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..93489e6415405294b7abd30a35cd999a5c92fd6b --- /dev/null +++ b/easybuild/easyconfigs/g/gimpi/gimpi-2017a.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'gimpi' +version = '2017a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain with Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp = ('GCC', '5.4.0-2.26') + +dependencies = [ + comp, + ('impi', '2017.1.132', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb b/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb index c16d2b51eb658961f858a6f5b92c701024af684a..449b40c4aacaabd6ca7c87e1e6a22bcb90978cc7 100755 --- a/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb +++ b/easybuild/easyconfigs/g/git-lfs/git-lfs-1.1.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index 7f241b68843566a53bec3a370f4f6380a77b7f21..68edf4aa52738ba82b9ac4242fb6d53684b5079c 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index 316219216f8ea8ad138c0fbeb79e36a14ffbffee..3fc62cda33c4d81778fca9f57d017406246b860b 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index 12ddedc547d70d0ff689bcfdd64b583d32f02e25..98ff106f5e7941d6c25d7ef8e613cc1df3327f48 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index 343da7e2bc5925c454b8fafbb584af9952b1308a..9d558fa920fc56ca942f5960c1585ce2b6000552 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb index 7360f033fed6d89439aadd1d53ec98d3decf3acf..6ac9c8056e6222be1f6eb921e307a92abf2cbb31 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-2.13.1-foss-2016b.eb b/easybuild/easyconfigs/g/git/git-2.13.1-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..76cf3e795712da6346f7caa76731846bb2e32317 --- /dev/null +++ b/easybuild/easyconfigs/g/git/git-2.13.1-foss-2016b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'git' +version = '2.13.1' + +homepage = 'http://git-scm.com/' +description = """Git is a free and open source distributed version control system designed +to handle everything from small to very large projects with speed and efficiency.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/git/git/archive'] +checksums = ['c0e3fe359f715cb7dfc3ac63fa6e733a'] + +dependencies = [ + ('cURL', '7.49.1'), + ('expat', '2.2.0'), + ('gettext', '0.19.8'), + ('Perl', '5.24.0', '-bare'), +] + +preconfigopts = 'make configure && ' + +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--with-perl=${EBROOTPERL}/bin/perl --enable-pthreads='-lpthread'" + +sanity_check_paths = { + 'files': ['bin/git'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb index 1da07f9d5892b42fb844754069956d1ebf372989..9d36d6d2e59239526426fc42dc25235dd13f8b9f 100644 --- a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb index ec7ac4488bbd61fefb6b589c0f6a1b799a480feb..e2b308a37087eff4ed151f9cb87a2472e69e7ff1 100644 --- a/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-2.4.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gmpy2/gmpy2-2.0.8-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/g/gmpy2/gmpy2-2.0.8-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..d82b9f3a9d4723649fa3b60da77165d3c6fbe7a6 --- /dev/null +++ b/easybuild/easyconfigs/g/gmpy2/gmpy2-2.0.8-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'gmpy2' +version = '2.0.8' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/aleaxit/gmpy' +description = "GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] + +dependencies = [ + ('Python', '2.7.13'), + ('GMP', '6.1.2'), + ('MPFR', '3.1.5'), + ('MPC', '1.0.3'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 3d45dffc3f5c2883578a85493949d6e2791b7376..b7a8f51ec8848194e271621103c0633db75a8d12 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index b95685cff8af9a42f7c7aab5832f352a11c6ff4a..30a93a0ae68b717ab800550d9a1fe44198b2d8aa 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb index 7112a25a66625b50e79f10585750aa8881531a51..175322b4a7c06687b24de0a93cad85c0feafe382 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb index e30d4a22d3964442fee4dead1790dd0cf9d8e671..98df4333c56fbe8ebcf7a622aff4fad3af732e91 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb index 8f7d80279e437e7a1061d89c9f493698a37a23b3..711098e0832873381f70ee9a6d885290e3ea5e5e 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.0-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb index 5903cd754c1139b7e01d0104533fb1e4e265e74e..622c222c99b3587abac43ecd8449ba49b459f233 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.1-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb index 7e42e00e676c02b8b559e32f7f5a1f9ccf847ad5..abc501af506a0ed70b499b9b2919661a6b6a1399 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb index 131131cfee1f615ebfdb3a5235ade2e278bd1b4a..e83b27fbe1dcb7b2a1877b53231175faab855a8d 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.3-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb index 20416b1946aac584249b1626d2311d7cfeed2f61..09840a3a2e8fe474366d6db04e5a3888640daa92 100755 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb index 1181859b405511603a9318d59c967ef0f0ef2d6f..500cd9df295c98a157bff99eb72dac2b7d118be3 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.5-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..7b2974dbf3d66778a5d557500df18851cb6984c9 --- /dev/null +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-5.0.6-intel-2017a.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## +easyblock = 'ConfigureMake' + +name = 'gnuplot' +version = '5.0.6' + +homepage = 'http://gnuplot.sourceforge.net/' +description = """Portable interactive, function plotting utility""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] + +dependencies = [ + ('cairo', '1.14.8'), + ('libjpeg-turbo', '1.5.1'), + ('libpng', '1.6.29'), + ('libgd', '2.2.4'), + ('Pango', '1.40.5'), + ('libcerf', '1.5'), + ('Qt', '4.8.7'), +] + +configopts = '--with-qt=qt4 ' + +sanity_check_paths = { + 'files': ['bin/gnuplot'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-foss-2015a.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa479b36e5c9bc3630ce8ec110dc6ff38d1656c2 --- /dev/null +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-foss-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'gperf' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/gperf/' +description = """GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash + function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash + function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single + string comparison only.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/gperf'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-intel-2017a.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..6b56add6d55aaa5e47725b186c0992c44d78604a --- /dev/null +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-intel-2017a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'gperf' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/gperf/' +description = """GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash + function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash + function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single + string comparison only.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/gperf'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..6dd680f7e445e83104294ff9776bf892c6908736 --- /dev/null +++ b/easybuild/easyconfigs/g/gperf/gperf-3.1-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'gperf' +version = '3.1' + +homepage = 'http://www.gnu.org/software/gperf/' + +description = """ + GNU gperf is a perfect hash function generator. For a given list of strings, + it produces a hash function and hash table, in form of C or C++ code, for + looking up a value depending on the input string. The hash function is + perfect, which means that the hash table has no collisions, and the hash + table lookup needs a single string comparison only. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['588546b945bba4b70b6a3a616e80b4ab466e3f33024a352fc2198112cdbb3ae2'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/gperf'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb b/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb index 1bf0222ad3e304f128dc125a87591810be3cd9b3..a16b047807227501c539e75244d50a8608d409a4 100644 --- a/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/g/grabix/grabix-0.1.6-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.21.0-foss-2017a.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.21.0-foss-2017a.eb index fa7f84d3e35fc54f2d0c92c3c299f16354e07c7b..cd817e4d4abedd54f82d5d4e017f662509ace69f 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.21.0-foss-2017a.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.21.0-foss-2017a.eb @@ -22,4 +22,3 @@ configopts = '--with-jasper=$EBROOTJASPER' parallel = 1 moduleclass = 'data' - diff --git a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb index 3020c00623d6bbd1bf5dab519d23790332dd2d34..bffc1db371675197523ccd96e9346824b2e6746c 100644 --- a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb +++ b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-mpi.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb index 8cae45f338cf3debf8b0fb4de4cf883e26c957a3..d14dd7b8c32255d7dcd4b8ec0d2c390db79065ee 100644 --- a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb +++ b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-openmp.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb index 075812f642abe8ddb2da3b48cd79018f0ea324d4..3f1f59fa95a229d4e60d20eaf06d221a9e05eb8f 100644 --- a/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb +++ b/easybuild/easyconfigs/g/gromosXX/gromosXX-1.0.1737-goolf-1.5.14-serial.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure # The University of Auckland, Auckland, New Zealand diff --git a/easybuild/easyconfigs/g/gtest/gtest-1.8.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/g/gtest/gtest-1.8.0-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..55b27244e489d4372ecd5bad4cc108c345504269 --- /dev/null +++ b/easybuild/easyconfigs/g/gtest/gtest-1.8.0-GCCcore-6.3.0.eb @@ -0,0 +1,19 @@ +easyblock = "Tarball" + +name = 'gtest' +version = '1.8.0' + +homepage = 'https://code.google.com/p/googletest/' +description = "Google's framework for writing C++ tests on a variety of platforms" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +sources = ['release-%(version)s.tar.gz'] +source_urls = ['https://github.com/google/googletest/archive/'] + +sanity_check_paths = { + 'files': ['CMakeLists.txt', ], + 'dirs': ['googletest/include', 'googletest/src'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb b/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb index 8dc32d3aadcc4001ce606afbc26cf001e53b6129..e4de322688691a26727cc058d0cde6824daf53c1 100644 --- a/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb +++ b/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb @@ -21,7 +21,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/gtkglext-1.0/include/gdkglext-config.h', + 'files': ['lib/gtkglext-1.0/include/gdkglext-config.h', 'lib/libgdkglext-x11-1.0.a', 'lib/libgdkglext-x11-1.0.%s' % SHLIB_EXT, 'lib/libgtkglext-x11-1.0.a', 'lib/libgtkglext-x11-1.0.%s' % SHLIB_EXT], 'dirs': ['include/gtkglext-1.0/gdk', 'include/gtkglext-1.0/gtk', 'lib/pkgconfig'], diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb index 04f20070136e0a51ce7f05c377993cbf2f6c037b..346229a60d100c3107980921067006b3d9c6b552 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb index 677ec0c4a607fe02b0ed8d254951b7d201edfcb8..0282f12e457c63c202633d26a49f843b86a4f073 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Author:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb index 87a654b58ca96c79c59e555370e13f048f17dceb..356edf5aadf67cfe03ad643b56a585a59fc63392 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb index 86cfca091f8f2b2dbe7e5e9cf58715faa2001329..fdb8e4ad690d77a09b24c0667bb35d6afeccf6dd 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb index d309818ed8d3b46fdb9f4ea65f58622003c32450..006952cabaf5bc1b762416b18cc96f6c3c1b60c5 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou @@ -21,7 +21,7 @@ description = "gzip (GNU zip) is a popular data compression program as a replace toolchain = {'name': 'ictce', 'version': '5.3.0'} # eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz -source_urls = ['http://ftpmirror.gnu.org/gzip'] +source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] # make sure the gzip, gunzip and compress binaries are available after installation diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb index 5f29b035e2976d87dde2ca1dddd50f1930f43e67..24f9247f5e4fb7e41e8816d6dc52a08688cab759 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou @@ -21,7 +21,7 @@ description = "gzip (GNU zip) is a popular data compression program as a replace toolchain = {'name': 'ictce', 'version': '5.5.0'} # eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz -source_urls = ['http://ftpmirror.gnu.org/gzip'] +source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] # make sure the gzip, gunzip and compress binaries are available after installation diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb index 036f697797d78556b11fd908d0bf18a111846b4b..9c01e1b2fa9fc2f7729d24174a2512703002ccf5 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou @@ -21,7 +21,7 @@ description = "gzip (GNU zip) is a popular data compression program as a replace toolchain = {'name': 'ictce', 'version': '6.2.5'} # eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz -source_urls = ['http://ftpmirror.gnu.org/gzip'] +source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] # make sure the gzip, gunzip and compress binaries are available after installation diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..fcd38e2364ee03c2df4b8e9fa2a4a6d865535b91 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.8-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.8' + +homepage = 'http://www.gnu.org/software/gzip/' + +description = """ + gzip (GNU zip) is a popular data compression program as + a replacement for compress +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['1ff7aedb3d66a0d73f442f6261e4b3860df6fd6c94025c2cb31a202c9c60fe0e'] + +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb b/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb index 9874a034c685570f1e8650de87afceab97e6ccf5..9ce09554133187499a3b540c68ba1877ed7238a6 100644 --- a/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb +++ b/easybuild/easyconfigs/h/HAPGEN2/HAPGEN2-2.2.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f1b4395af48856e9fe821ab74f1dd513bdd1d553 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.13-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'HDF' +version = '4.2.13' + +homepage = 'http://www.hdfgroup.org/products/hdf4/' + +description = """ + HDF (also known as HDF4) is a library and multi-object file format for + storing and managing data between machines. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.hdfgroup.org/ftp/HDF/releases/HDF%(version)s/src/'] +checksums = ['be9813c1dc3712c2df977d4960e1f13f20f447dfa8c3ce53331d610c1f470483'] + +builddependencies = [ + ('binutils', '2.28'), + ('Bison', '3.0.4'), + ('flex', '2.6.4'), +] + +dependencies = [ + ('libjpeg-turbo', '1.5.2'), + ('Szip', '2.1.1'), + ('zlib', '1.2.11'), +] + +configopts = '' +configopts += '--with-szlib=$EBROOTSZIP ' +configopts += '--includedir=%(installdir)s/include/%(namelower)s ' + +modextrapaths = {'CPATH': 'include/hdf'} + +sanity_check_paths = { + 'files': ['lib/libdf.a', 'lib/libhdf4.settings', 'lib/libmfhdf.a'], + 'dirs': ['bin', 'include/hdf'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb index 55975c97d5d6eb69d722f95fb9cba6909c8fb8b3..78f22f07df29ea95461b5548d3776ccd252c34a8 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-foss-2016b.eb @@ -1,7 +1,7 @@ name = 'HDF5' version = '1.10.0-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" @@ -12,8 +12,6 @@ source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_ma sources = [SOURCELOWER_TAR_GZ] checksums = ['9180ff0ef8dc2ef3f61bd37a7404f295'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb index a728a33f564cad96ddd8a3dffdfc7dbc1e7563fe..826740a3fc436fc565f674f3128e875e5cb704d7 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-goolfc-2016.10.eb @@ -1,7 +1,7 @@ name = 'HDF5' version = '1.10.0-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" @@ -12,8 +12,6 @@ source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_ma sources = [SOURCELOWER_TAR_GZ] checksums = ['9180ff0ef8dc2ef3f61bd37a7404f295'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb index 8eddf5504b701316f1ed1c0bc9e212c06bdf961f..73282dd565a0033d0ce54bca76c02f54b65a3825 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2016b.eb @@ -1,7 +1,7 @@ name = 'HDF5' version = '1.10.0-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" @@ -12,8 +12,6 @@ source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_ma sources = [SOURCELOWER_TAR_GZ] checksums = ['9180ff0ef8dc2ef3f61bd37a7404f295'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb index 5cf3a3e7f5ab0fcc3442db85a32989eb24b38895..9319a2c2b14a6eba749858c949395726f00b9703 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017.01.eb @@ -1,7 +1,7 @@ name = 'HDF5' version = '1.10.0-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" @@ -12,8 +12,6 @@ source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_ma sources = [SOURCELOWER_TAR_GZ] checksums = ['9180ff0ef8dc2ef3f61bd37a7404f295'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb index bc132a214419692c850a61cbe56b10d3688b5d27..2861eb199de3b33356d0aa5317b5c68153f5b0c1 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.0-patch1-intel-2017a.eb @@ -1,7 +1,7 @@ name = 'HDF5' version = '1.10.0-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" @@ -12,8 +12,6 @@ source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_ma sources = [SOURCELOWER_TAR_GZ] checksums = ['9180ff0ef8dc2ef3f61bd37a7404f295'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..67013514635caf28f10cac6d33d21dc23f3f4b7b --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-foss-2017a.eb @@ -0,0 +1,20 @@ +name = 'HDF5' +version = '1.10.1' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['43a2f9466702fb1db31df98ae6677f15'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb index d72f14fe00de427f76fd5458ed3761b45691b1c6..711b3163cba8a6d78104df7e5c81736d69de8cb5 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.10.1-intel-2017a.eb @@ -1,7 +1,7 @@ name = 'HDF5' version = '1.10.1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" @@ -12,8 +12,6 @@ source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_ma sources = [SOURCELOWER_TAR_GZ] checksums = ['43a2f9466702fb1db31df98ae6677f15'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb index 9d10ec816c39abe2aacc54460e771bb9c80fe80c..1e95612a1b91dd99c12adbd563269ea1f4749b94 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-GCC-4.8.1-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'GCC', 'version': '4.8.1'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb index 288a2e47ff1f176633f07b1208611356db4036b1..1f3a15a705ab2b1014f445cd8df4f653235055d3 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-goolf-1.4.10.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.10' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb old mode 100755 new mode 100644 index 1b265145240d6ea7e0f89738ff56a01b6db7755e..9f3153cef84c0d0572e49143aa3948b4491278f0 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs-zlib-1.2.5.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = "-gpfs" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb index 20e204943c97a62d35d56ea07f18b0e37073ef0e..314870506e5f2bcc42a5d9d835a5f4196d236583 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-gpfs.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = "-gpfs" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb index 4923cec8199f739b24e75f50bfe591bc1f98ea19..54393d6cef365aae3e6d3ee75b2cd7498fbc3cc8 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb index 53c166e963e447d1949c6123de0a4c4db49752a1..75fb24dc93aeb906d0d5d58e3d9548a576666175 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.3.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.10' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb index 126e4735841547a9bd4289b7e921d2b25f887cd8..2aaf800fdb147285542f136eda73934bf549bbc4 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.4.0-gpfs.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = "-gpfs" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb index eec3211c353abae142e00d13efbc91851328eaf5..664ac4915d3da258fb0aae58ec19aa35b8221245 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = "-gpfs" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb index caf75ce765720f6717d7c9c969ed3dca67c459c6..4f6fffd29af3c38faf3a94e0b6ac9c034f1eda4c 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-6.1.5-gpfs.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = "-gpfs" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '6.1.5'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb index fa45e3d80d2354f7de84154234ef2b8d274052c6..55ac49288a169a279d2ee4c7fbab6739d7635288 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.10' versionsuffix = "-gpfs" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb index 0f94ca89b354489b128ae090d761c6ec425214e2..ed6d0e1c4e19dddcc762ddd6d1c06ca4678d2417 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.4.10.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.10-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb index c83b2a6347231dfa072ed05d7290c9c4dd52fc31..da6a6ac07e2de4e671a15e90f6dad5f697cb6df1 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.10-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb index 96aaf0422324e7e44986266149d14fde12a19f46..df1a74ad9adea34555aed8d47acfaeec800a07e6 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-ictce-5.3.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.10-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb index d4743307f63c012299e4d4eba19dc5b953559b10..69b3336df02d3b7a342919f4e725d42dac0203a3 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-GCC-4.8.1-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.11' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'GCC', 'version': '4.8.1'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb index 4406c160f4592b1efa188c6f33cd49419ee339c6..baa65b4571f69dcc269641d9c222dc8cd923f0a5 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-goolf-1.4.10.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.11' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb index d1cfae67050426c2f4835054d229a7ac32ac6008..7095cb38b8faf2075d389c7156400f5b9a9340c2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.11-ictce-5.3.0-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.11' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb index a0a7586662d76d369ebaf4521b8f21027c8bbaa9..d0013da7bfc4ca946ad8692f336d8b511966556d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.12' versionsuffix = '-zlib-1.2.7' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb index 233b7e31da3611e33af3ee9c769da518d8489585..777fc010e619e7c38aa304569f944a22c1a5005d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.4.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.12' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb index bf02342e7c1fb07307c203be11d741068caed303..ba8d0856264352c9eccf2bc02532fa0ec1a43f24 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0-zlib-1.2.8.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.12' versionsuffix = '-zlib-1.2.8' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb index 0a10444693d30401266e8493d70fded861fb3185..fd08cc083efb1d5b17a1c75772f62514b1857a13 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-5.5.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.12' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb index da7a64fcf9321ea2a758c27c1acf2e4df9190ae5..e8c2b7e7ab4c39e2bd89054382d0aa335e1c1864 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-intel-2016b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.12' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb index 2af8e449bf044a78d309b97dc0aef326b903e3d6..c5622dfd07fabb57a6feec16925121eef8e6269c 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2014b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.13' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb index f79d365b61b675b858b3a5ff607c123d7ae398ce..b6151ce7c1abb9760f884a903763253b4d15d4c4 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-foss-2015a.eb @@ -1,22 +1,20 @@ name = 'HDF5' version = '1.8.13' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb index e20cda0940175f4c6874c245673aaf0737579fc5..440bfaf4dad6582f08beb5816b85445690eeb009 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.13' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb index 16f7a037760d6d337d246e37900524a9346e787b..1c2e0ae55d27181c388b849fef9749e1338c4612 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.13' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb index a74b48d6644fc17dada2c5f58818b19be5aab86c..17df3cb04f5d98e968e2dd20b371255f8952e5a4 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.13' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb index 35077bfe35b1c7586ed630324ffed3b37be0a40b..d1a99fe666c2341093c833fb6a7c48db9ef5529d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-foss-2015a.eb @@ -1,23 +1,20 @@ -# Built with EasyBuild version 2.2.0dev on 2015-06-16_11-02-41 name = 'HDF5' version = "1.8.14" -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb index 8ffb9102ba013a74e03685138205f58847db9606..0fb424c7998e8b4524085dc3ca8d4a946f2e2b25 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.14' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -17,8 +17,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb index 5d8a6788d392326f1f1891d370a9b274ca4c2211..b97088f0e328dfce66632ebf45ccada45c206e60 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.14' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb index 0db92859a227a8207c565edc221a4015fc4f0439..5414c97fd0894cd396055c5c52d409298fa4954e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.14' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb index 2b7af38374dd2b305c787158d6b82bcd54e5aaa6..f04a2bfbbc1510a204f6b270fa0271f9a973ef4a 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.14' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb index ef7549e98750a39c283e048d38a0641d2b1e02c7..cc345601a77d2b551f381376d065f566b1b8533b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-foss-2015a.eb @@ -1,20 +1,18 @@ name = 'HDF5' version = '1.8.15' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb index 9b028b25b80993ead6d4eed8d6aeb7b7a0e9f432..0bfd6778dc1a7e17661cedb697f5381086ca7a03 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.15' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb index 802e3dd6a160c1c5db0057f165cb8ebaff85ba1b..e7b7b4e75ddb51ceb7e98a17dd2bb10a6c8595d9 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-intel-2015b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.15' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb index a9ec210198beb82aa7b7f62a359dbeb28d19e940..9514ef2c7b7e118617725ea4d95fb1242e9f59a1 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015a.eb @@ -1,20 +1,18 @@ name = 'HDF5' version = '1.8.15-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb index 8b6038c4eef7e2fe06546170e9c1ea6b467719d3..dde5f4481ecfff51bdff240f52f3a26a0f67be01 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb @@ -1,20 +1,18 @@ name = 'HDF5' version = '1.8.15-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb index ec9b5d3a8a312b650c67e1dbcbf0e7e6d5698017..1c3be3c8320c5b363e052b9cef84554b715312fc 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.15-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb index aabe3f8e81cbc467385362d13fc509de385a9e4b..bcba39eb8f692737a15e22bd4059e386ebca3022 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-intel-2015b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.15-patch1' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb index 25e05e8e27ae22d5bdf4835410d7911f97018bdd..bdd56e87c144cb3af8457924b6f8a8a5152eee19 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb @@ -1,20 +1,18 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb index 2936e9795e141ba85e0e29bb22751f0d526812c1..1f315f8f382718d6334101f00e7bb1da854d560b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.16' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb index 7250d32fe55abcb532b1aa74b23cd40422e11210..d7f79bf614ed78e86b444e6d7e98e0ed14e2a475 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2016a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb index 3f80a99e7110b9291a808ba648c1bfdd381b435a..ac5b55494467603dab03ebac8d43c69db37b2f3f 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-gimkl-2.11.5-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.16' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'gimkl', 'version': '2.11.5'} toolchainopts = {'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb index 1b0486b8308ce25763763536879838be0e6c0ddb..d28779cc9c2862a3f81d1b02b0293100bac2983e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.16' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb index 8df4b885240b00623385661864eaf91398cd14ee..70e4ec54b7cf40a025beb19927de1bf4a747b44e 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2015b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb index d1c17ce30e587c89343aa470163633f0c3eba61a..11f989ce67133575718c9e682451cbe572a52068 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016.02-GCC-4.9.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb index dc2e939bfa51a059afbb7caa5366c9b5bb907c8d..930a707634dbc3414f99732cbef9070235ad4b75 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.16' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb index dc65dce562edb3031a04588bd4b0c3f4a354404a..22d10bc205d9dc770d7296b308650d5a2fdfe082 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb index d61bff1fffd789c7cdb00cb0c96015e70d27258f..490c43aea3e69134bc433cea800228344a15109c 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.07.eb @@ -1,20 +1,18 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'iomkl', 'version': '2016.07'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb index e3d38f197654f2ec0c787beb3e47c442f0cc06bb..9ace13e3df113202e43d7d27ff467c3a830f41d5 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -1,20 +1,18 @@ name = 'HDF5' version = '1.8.16' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'iomkl', 'version': '2016.09-GCC-4.9.3-2.25'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb index 1cc3adf6f76998497e96e6998282bdea49ecd0e6..9ed0a9b12ded03d6474fbe570dd4337f431796a9 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.17' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb index 359ef33d9bc499e99119cc08de9f4afc32bdfabd..2a7c9054f49b9395a90062f3730e7dcf585e5618 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016a.eb @@ -1,22 +1,20 @@ name = 'HDF5' version = '1.8.17' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb index 5063dd3bc673ac638a76661fb9dd1ae72cab0eb1..365f098c884bc3fa18f5b377ef5a5f0aeba2280c 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-foss-2016b.eb @@ -1,22 +1,20 @@ name = 'HDF5' version = '1.8.17' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb index 7ab0f77fbacea4cbe12453b5d29c76f22451a586..2dff146ecc5a46875f703c47b6d680a660174a89 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016a.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.17' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb index ded2abcfa1cc2230cd9d42bcc80bc29540835d76..e3b8e084aeb1bcc2908e350e5cbfa93887bfb723 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b-serial.eb @@ -2,14 +2,14 @@ name = 'HDF5' version = '1.8.17' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': False} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -17,8 +17,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb index d67a77ebd21b4147bef1bcdede36e319fd20daea..b513c5e0c7f03123f6f6064fdaf7c2c8be315023 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.17-intel-2016b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.17' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ @@ -16,8 +16,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb index e6c0e7eab7c9710f7788bda951aa694fe9f6884f..a6292e12c4594caaa95f78a5dcbfeef06330c510 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2016b.eb @@ -1,23 +1,18 @@ name = 'HDF5' version = '1.8.18' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = [ - 'https://support.hdfgroup.org/ftp/HDF5/current18/src/', - 'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(versions)/src/' -] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] checksums = ['dd2148b740713ca0295442ec683d7b1c'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb index 1febe1c832f571c3862885668de2757ae125884f..fdf33772a94b981e02e9f881ce48c95ee4a1ac1b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-foss-2017a.eb @@ -1,23 +1,18 @@ name = 'HDF5' version = '1.8.18' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'foss', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = [ - 'https://support.hdfgroup.org/ftp/HDF5/current18/src/', - 'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(versions)/src/' -] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] checksums = ['dd2148b740713ca0295442ec683d7b1c'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..11630b75f77c897207eede092cf158f41c1d2697 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-gimkl-2017a.eb @@ -0,0 +1,21 @@ +name = 'HDF5' +version = '1.8.18' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] + +sources = [SOURCELOWER_TAR_GZ] +checksums = ['dd2148b740713ca0295442ec683d7b1c'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb index d1efd2d906ef87afe0a3ad7393e5a1c98eab335b..cf96723fc70110f154e8501ed0a15b33142d32c5 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2016b.eb @@ -1,23 +1,18 @@ name = 'HDF5' version = '1.8.18' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2016b'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = [ - 'https://support.hdfgroup.org/ftp/HDF5/current18/src/', - 'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(versions)/src/' -] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] checksums = ['dd2148b740713ca0295442ec683d7b1c'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb index 2b7452c39b768efdeb380bda5470256320125edc..5619f021d4b4078dd04cb216dc9f012bdc083c9a 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017.01.eb @@ -1,23 +1,18 @@ name = 'HDF5' version = '1.8.18' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2017.01'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = [ - 'https://support.hdfgroup.org/ftp/HDF5/current18/src/', - 'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(versions)/src/' -] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] checksums = ['dd2148b740713ca0295442ec683d7b1c'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb index ef054b6cdfd475dd5a75db993c1f83d5b2b37fa7..c33a218cc9aeef80ce662e8e59f2e5d59bda8dde 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a-serial.eb @@ -2,23 +2,18 @@ name = 'HDF5' version = '1.8.18' versionsuffix = '-serial' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': False} -source_urls = [ - 'https://support.hdfgroup.org/ftp/HDF5/current18/src/', - 'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(versions)/src/' -] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] checksums = ['dd2148b740713ca0295442ec683d7b1c'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb index 570e4a8ff2c0d568323e1f7188b7f4feec59fbeb..861500bc3a6328e8c98bbdc7e0b71af453b0b115 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.18-intel-2017a.eb @@ -1,23 +1,18 @@ name = 'HDF5' version = '1.8.18' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2017a'} toolchainopts = {'pic': True, 'usempi': True} -source_urls = [ - 'https://support.hdfgroup.org/ftp/HDF5/current18/src/', - 'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(versions)/src/' -] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] checksums = ['dd2148b740713ca0295442ec683d7b1c'] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.11'), ('Szip', '2.1'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a3a8e597315fa51e786cf0e760163f2522a8c498 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.19-intel-2017a.eb @@ -0,0 +1,21 @@ +name = 'HDF5' +version = '1.8.19' + +homepage = 'https://support.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] + +sources = [SOURCELOWER_TAR_GZ] +checksums = ['a4335849f19fae88c264fd0df046bc321a78c536b2548fc508627a790564dc38'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb index b8dd1adc771aa57159b28231408fe0fd7bf1d372..3b0999608a9512f96c5841f63e6125df2e6e6683 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-goolf-1.4.10.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.7' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb index d33b58408f6222ebc5bc44922c6300e1cb9f8a0e..efc7ae1f6e57854320fb2559a4ed45105dbf6f89 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-ictce-5.3.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.7' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb index 513cb0e22b66c39e22622b3b10110af655643a98..ddc5289cb52ed2e988f92bf48a69900d0e06800b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.4.10.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.9' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb index 46dd3d15ada97e5cf7db37e6ebaada9010c1606b..e77a9b41a18cd460bd22d4b0849be0722c6c2fb7 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-goolf-1.5.16.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.9' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'goolf', 'version': '1.5.16'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = ['configure_libtool.patch'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb index 7cd6cdf595c010a08fbf05315e0bc94e352bad16..24dd608c1882fc4b212a7a60e8aa89716fe2455a 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb @@ -1,15 +1,15 @@ name = 'HDF5' version = '1.8.9' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.2.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] patches = [ 'HDF5_configure_ictce.patch', diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb index fd4fb4e5c0c936e8fee6e847dee8cc961240421c..202a1ff1e508914d9687b3999c43cd4047bcee9a 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.3.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.9' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb index 4c1c1db1578db6be85e910c3e6e75f33e56f5094..51723ed590931f5a80fcfd197f7a24ab0fa300b4 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.4.0.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.9' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb index 24af13ad70b0d0e2c7d768743b5c98f6cf11bdb7..e3dd542387c94ff5fba09867afd0ddc4f87499ac 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-intel-2014b.eb @@ -1,14 +1,14 @@ name = 'HDF5' version = '1.8.9' -homepage = 'http://www.hdfgroup.org/HDF5/' +homepage = 'https://support.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index 562e5955579d97f4435fd6b8307457ff03a1c1cd..d814155d4811b3c74d3b834d69ccb90ecc5e9eb8 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index ee8ba6219525463e65eaaac14e170c12c1d224e2..575f1cb3a195ab82f54dfb43380b65047e34516e 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index ee8eae3fa74e63e4a51bf096a4363f2cd2ece70f..58666bd91f5c522d47d8c5431a5c3dff03443983 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index c4861d5fc598746c89329a2937505bb6ae0a134b..180372ef32d8e0ee7fd68563e6e7392c35fd44a3 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index de6a298e59614db1a83ceef298bfce564254906c..46ef675ae28ae92b0a68748e55b8de713bf70cfc 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index 2a1f6d334f84885c75dde589aba27ed5a6a86868..9368f8b01496e86abdc02d20f44a391ae33ef265 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb index aed3e32ba8e8b3701eca00d27e534eb8a7b54caf..cad1b86e449a992ca5897fa93695be5ad1910c12 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb index 66c915507d8d3f3a869893315f5ad4221f670294..eb4bc8d61f35b5e4ac043d25a1e153536bd8a971 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb index 3ca7456fc5db3dc48f57848f24360f04b022a4e6..16913ef0f26f3ca4c04f52bfef4cb2c31a0a1422 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 05c50b39b973ccb460ca143de66968375064d8c2..36c9dbdcc408222fdd7ebcaf804030d60949e578 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index a420531caeabaa0c752c7b91d7bc73128d98fc7f..2a8073ec7452fc042df39561c36f56bbf83343d4 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 259d3f70b6fb79cd254a88b100919dbdb7b102c0..1b8304beca1b2cdb6f51bcfd24f69c98b6748c1b 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index ac9bda6d5df60cbb34ad2f5e13c0c0e5405c3ffb..f65efedca61c3c05ce8fde2c9e965194e34b9637 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index a4a4c517a0d8e9c63bbfd01c998cb65476fb9782..c6d311c611c37e69e6571162df92480878beee2d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index db4a026864c10a81120051048aa4046ccd3769ec..3147429e4f186cc19241cea72dae5c1089ab3b5d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index 53cb50514fe45c529df44c6dbad251c1525acd43..a497fa7b0efbfd4d710773b1032a6ad2af5709f6 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index 7f92d9a9514be69a3e48f02628c6bc85dbca9b72..a39dfd954722d44df85338632bab4aa2530502cc 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb index 2f2abef4e6730210c5180cb11d88aadb90dd0e49..0f044b49618fe136065855d69606dbec7c28217a 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb index 36facf37a3ef9b2c65348ee18dde0f7af6878cde..ffc593fc728e6fb3930d439f08091a7177c22bdd 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb index 7f25a2acfbdbdb35e19dce92a5250eefa82df132..510a0b491aaddacd96c6bea0a7d5b9d84e545e5a 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb index 258f48d92ee736ca140bfea003d76557916b5220..5770c1df407b7ea03eff09be961690d65191a608 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb index 8c0f7d5ac6f056394b9053626ab410b7fc1ac82a..bc2b40e77d866e62614e5d42f5380de704208cb5 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb index 93d7d3c6dfeabd1ac3bce9afa692144f79f315ab..aa4b195ecdaf479c02ef48d73cdc365b218d261e 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb index 7b22333e99d996afb643dd7358c076ef67ce7b08..3cf499fca672798d7a2b40c6b8b9f260251ac596 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb index a935ba287085c25e4ae7dccd7a9482a63f466586..77e076361bef9678a809d1e649ae7f57b42dcfb4 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb index 71dc9972065b0a04f2f9ad28517c9bee99d2b948..76292f8b7193a462cac53b46d2d3c56ab1573aaf 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb index f75133a502dd54a6de512154f6b94eebdc09cf00..890b17a7bbaa0833c7914324d9170956f3f512ae 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb index 38ae993dca4aada59a02819f1f68f8750f303918..beb21e07061015dc76501b4b336cdc23ec0527cf 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.1-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb index b0528a8f0cc999c0654f4f172939e74108513ecd..d8508a8bed3ee8dbadd25d18b8bb9fd14207c72d 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3.2-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb index 9bdb215d4c5d73d4113385fe4062d8880bb624d7..6efdbf148777a50976fa6af4f2644df706692fa4 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb index 5c5a91710c7538773dbf9d7655cb650b8791cc29..6836878b7b3be86682bcc4d350bccd6154d1f9cf 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8c2560f6d176581cf5b0a4bfd6a6ddb54198f92 --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.4.1-intel-2017a.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# 1.4 modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.4.1' + +homepage = "http://www.htslib.org/" +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +# cURL added for S3 support +dependencies = [ + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.3'), + ('cURL', '7.53.1'), +] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb index e9e046ddd841d54d18337ac3e734cd1b937df1d0..332b887d4915e1b391a38835be36de4333502463 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-20160107-intel-2017a-PacBio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.3.1-intel-2017a.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.3.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..58049805dd48a0da6e552cde6ee5b0b84da81d85 --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.3.1-intel-2017a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'HarfBuzz' +version = '1.3.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/HarfBuzz' +description = """HarfBuzz is an OpenType text shaping engine.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('GLib', '2.52.0'), + ('cairo', '1.14.8'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +builddependencies = [('GObject-Introspection', '1.52.0')] + +configopts = "--enable-introspection=yes --with-gobject=yes --enable-static --enable-shared --with-cairo " + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT, 'bin/hb-view'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb new file mode 100644 index 0000000000000000000000000000000000000000..22fe0fbf9110752f3efe0d4e4e0a56805ed37b6d --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.7.0-intel-2017a-Python-3.6.1-HDF5-1.10.0-patch1.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'h5py' +version = '2.7.0' +hdf5_ver = '1.10.0-patch1' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5_ver + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '3.6.1'), + ('HDF5', hdf5_ver), + ('pkgconfig', '1.2.2', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c354ad33693713c95515b46b342da9a3a648471b --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.4' + +homepage = 'https://www.gnu.org/software/help2man/' + +description = """ + help2man produces simple manual pages from the '--help' and '--version' + output of other commands. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] + +builddependencies = [ + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.28', '', True), +] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..63e4b751a13cfbf71faa10dc6a95d7d3d59703ab --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-GCCcore-7.2.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.4' + +homepage = 'https://www.gnu.org/software/help2man/' +description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] + +builddependencies = [ + # use same binutils version that was used when building GCC toolchain + ('binutils', '2.29', '', True), +] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4-gimkl-2017a.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f8074a854872a8e5f29e7480b3e100ef2c789a45 --- /dev/null +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4-gimkl-2017a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'help2man' +version = '1.47.4' + +homepage = 'https://www.gnu.org/software/help2man/' +description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_XZ] + +sanity_check_paths = { + 'files': ['bin/help2man'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb b/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb index 292de661e9187905b8b401e66f3f854be490d8ed..9dded57c0179e1faa20ebc1d464821990f4b90e5 100644 --- a/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb +++ b/easybuild/easyconfigs/h/help2man/help2man-1.47.4.eb @@ -4,12 +4,17 @@ name = 'help2man' version = '1.47.4' homepage = 'https://www.gnu.org/software/help2man/' -description = """help2man produces simple manual pages from the '--help' and '--version' output of other commands.""" + +description = """ + help2man produces simple manual pages from the '--help' and '--version' + output of other commands. +""" toolchain = {'name': 'dummy', 'version': ''} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_XZ] +checksums = ['d4ecf697d13f14dd1a78c5995f06459bff706fd1ce593d1c02d81667c0207753'] sanity_check_paths = { 'files': ['bin/help2man'], diff --git a/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb b/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb index ab045435b2d788e53e24fafa580d5cc816d9b00a..d0c34c2e6772c1bc02387df04904596546ab4b4c 100644 --- a/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb +++ b/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb @@ -50,4 +50,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/horton' % pyshortver], } -moduleclass = 'chem' +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/h/htop/htop-2.0.1.eb b/easybuild/easyconfigs/h/htop/htop-2.0.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..8c6054d0f4225d383427c792186f719f366f5116 --- /dev/null +++ b/easybuild/easyconfigs/h/htop/htop-2.0.1.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'htop' +version = "2.0.1" + +homepage = 'http://hisham.hm/htop/' + +description = """An interactive process viewer for Unix""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://hisham.hm/htop/releases/%(version)s/'] +sources = [SOURCE_TAR_GZ] +checksums = ['f410626dfaf6b70fdf73cd7bb33cae768869707028d847fed94a978e974f5666'] + +dependencies = [ + ('ncurses', '6.0'), +] + +preconfigopts = 'LIBS="$LIBS -ltinfo"' + +sanity_check_paths = { + 'files': ['bin/htop'], + 'dirs': ['share'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..aed499874e9fee5b0a5eb99b61467e3842a5a952 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.7-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' + +description = """ + The Portable Hardware Locality (hwloc) software package provides a portable + abstraction (across OS, versions, architectures, ...) of the hierarchical + topology of modern architectures, including NUMA memory nodes, sockets, shared + caches, cores and simultaneous multithreading. It also gathers various system + attributes such as cache and memory information as well as the locality of I/O + devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily + aims at helping applications with gathering information about modern computing + hardware so as to exploit it accordingly and efficiently. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] +checksums = ['ac16bed9cdd3c63bca1fe1ac3de522a1376b1487c4fc85b7b19592e28fd98e26'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('numactl', '2.0.11'), +] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +sanity_check_paths = { + 'files': ['bin/lstopo', 'include/hwloc/linux.h', 'sbin/hwloc-dump-hwdata', + 'lib/libhwloc.%s' % SHLIB_EXT], + 'dirs': ['share/man/man3'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb b/easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..f505003e03a8dbc0be58e2361a6a3acbdd2c90f9 --- /dev/null +++ b/easybuild/easyconfigs/i/I-TASSER/I-TASSER-5.1.eb @@ -0,0 +1,31 @@ +easyblock = 'PackedBinary' + +name = 'I-TASSER' +version = '5.1' + +homepage = 'http://zhanglab.ccmb.med.umich.edu/I-TASSER/' +description = """I-TASSER is a set of pre-compiled binaries and scripts for protein structure and function +modelling and comparison.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# Can't download from the web site automatically as registration is required. +# The source code may be downloaded manually from http://zhanglab.ccmb.med.umich.edu. +sources = ['%(name)s%(version)s.tar.bz2'] +checksums = ['c127f4932c11bb3f8940ad8510a3429b8e7dc14595cfee230af7cc52196a5396'] + +dependencies = [ + ('BLAST', '2.2.26', '-Linux_x86_64'), + ('Java', '1.7.0_80'), +] + +sanity_check_paths = { + 'files': ['I-TASSERmod/runI-TASSER.pl'], + 'dirs': ['bin', 'blast', 'COACH', 'COFACTOR', 'I-TASSERmod', 'PSSpred'], +} + +# You may find it desirable to put this variable in the module file. +# The command to do so has been put here (commented out) as a convenience. +# modextravars = {'IMINTASSERDB': '/path/to/databases/I-TASSER/%(version)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb index 70a1e78b616072617f59452b60faaf654c8d2571..fe1544cd6244193f4abd4de6d0b6d9c41900bf0f 100644 --- a/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb index 110b4809235ada2d3ef2e8f2739ed86545740e59..ee79473cdf7f71bac39fc80b64806d61eed31fbb 100644 --- a/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -24,7 +24,7 @@ versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': '', } diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb index f8dd5d79f289a939241be02f85879eacf4e07c26..c819155a71daa3d541230c87cc10dd2e41c1592e 100644 --- a/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGV/IGV-2.3.80-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -24,7 +24,7 @@ versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': '', } diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb index bc16033a08ab3d4e855b1803f2dd3492f4c69c2f..cea60ec23322f09fea51a0c3399f76b54ea50944 100644 --- a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -24,7 +24,7 @@ versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': '', } diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb index af0616b491d09844d250c58a3543147372e99fad..789c813666271a7717d5a16ff52abaea88cc7670 100644 --- a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.72-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -26,7 +26,7 @@ versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': '', } diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb index d2575fc6ec14782d88e24ceae02f0d6f4588ffb6..d8d59137d03f6f13421b66b401467581b1c0d4cf 100644 --- a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.75-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -24,7 +24,7 @@ sources = ['%(namelower)s_%(version)s.zip'] dependencies = [('Java', '1.7.0_80')] # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': '', } diff --git a/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb b/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb index 2cca42e4db17e4f3fc75752f4d22c32041e161ea..51f4a9d25bd12b14f583b15b67d9d9492a4e1cbe 100644 --- a/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb +++ b/easybuild/easyconfigs/i/IMOD/IMOD-4.7.15_RHEL6-64_CUDA6.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # authors: # * Pablo Escobar Lopez (sciCORE - University of Basel - SIB Swiss Institute of Bioinformatics) # * Benjamin Roberts (Landcare Research NZ Ltd) diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb index 03ab71fb0938194dd8c4586db01bb866c3d7aa8c..5e16612e00533d8f0442c887244a989355b4e0dd 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb index ba5278c5407ab2b5b8661243d3ceb01035754f3d..3bbb6f11e4670fed0c3efc93657211b6b2311f05 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb index 4a7086b810d79990f1551423c09324397d3983a6..a3ccfb16ac385f0d286e955b3055be2600633263 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb index 2f68d383ff68d065fbad7b90c9dd4e4e41dab133..d7a1d00fa6da87bcefc31dff3f17a967cff8f148 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb index da34c32da193b97cabe603aaadcf049c49a58fa7..369a2092f81bc4819fc7db6b60f627663988a1be 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb index 7502a94f7139039b50633e00aa3ad0ac5086a84a..4cabeebb51e0da6cc388fed6bfdac20193effe31 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb index 66d029ece5c0cb8b50d4f7d151e6493dccf5a1b9..ab6a7103ce9ad6bc7756d77dfb5672e8b9fd33f6 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/i/IOzone/IOzone-3.434-foss-2016a.eb b/easybuild/easyconfigs/i/IOzone/IOzone-3.434-foss-2016a.eb index 6af67462a39100f886d71e944f2b26953b5906f4..5427eeed24aad9df78962007916b6de18670cffd 100644 --- a/easybuild/easyconfigs/i/IOzone/IOzone-3.434-foss-2016a.eb +++ b/easybuild/easyconfigs/i/IOzone/IOzone-3.434-foss-2016a.eb @@ -21,7 +21,7 @@ files_to_copy = [ (['src/current/%s' % docfile for docfile in ['gengnuplot.sh', 'Generate_Graphs', 'gnu3d.dem']], 'share'), (['docs/iozone.1'], 'share/man/man1'), (['docs/%s' % docfile for docfile in ['IOzone_msword_98.doc', 'IOzone_msword_98.pdf', 'Iozone_ps.gz', - 'Run_rules.doc']], + 'Run_rules.doc']], 'share/doc'), ] diff --git a/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb index cc3235c7077bb9d8a6b3ad1e645f7a60e5b6c2e8..d40e59455e18a9ffc7b67c59ad308169f4d97357 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-4.1.0-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb index e5a53f115d6e67068aa85a5ff011e6976523f022..4d411ebcda5c1284a8373b1a193780d2429e584d 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb index ec8e81a4ce11f949736a5821796c8dcb8334d6c3..86ef6979c54bc1a1fd801d2f285ae80fdf9b62f7 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb index 17c246342c9b601f49010dfbc4345e7b2b6904dd..5a4fee9bff4a1cfc2915aab54fc405d2afbda013 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb index 7e4fd1539e4147c1efc7b7071b9757f7f2030ca9..9453d2738ad648cd274c68d332c5bba05fafbca7 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..11c3dbd67682c68b44e25fd30682f16af6cf3582 --- /dev/null +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-10-foss-2016b.eb @@ -0,0 +1,43 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Ravi Tripathi +# Email: ravi89@uab.edu + +easyblock = 'ConfigureMake' + +name = 'ImageMagick' +version = '7.0.5-10' + +homepage = 'http://www.imagemagick.org/' +description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://www.imagemagick.org/download/releases/'] +checksums = ['43912034c69171882536b359a7b84f9f'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('X11', '20160819'), + ('Ghostscript', '9.20'), + ('JasPer', '2.0.12'), + ('libjpeg-turbo', '1.5.0'), + ('LibTIFF', '4.0.6'), + ('LittleCMS', '2.8'), + ('FFmpeg', '3.3.1'), +] + +builddependencies = [ + ('pkg-config', '0.29.1'), +] + +configopts = "--with-gslib --with-x" + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'etc/%(name)s-%(version_major)s', 'include/%(name)s-%(version_major)s', 'lib', 'share'], +} + +modextravars = {'MAGICK_HOME': '%(installdir)s'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb index b01509be3a621f7ee2e732d3158d250c626f9577..1d846a28feac369a373d54fafa48098a21c722bf 100644 --- a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-7.0.5-4-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb index 033191a3d973369e24d665d435c6841281f4d523..430a419631b08290f85ff850f55c58637cf7752b 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb index e7debfe98faa7978625074e5ad5c5154232e0400..76f0bd86d1cbb61df3f5f4204962deac8a0596bc 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 5171c8b613137d5506d21a6a31bf908152b77e39..a1c62780782253580024a8a8d772c0104dcade63 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index a1476edd290aeed8eb237426ae928150a6eb6ffa..303ad1f1b559e268abdba31d94186b9f7b8f259a 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index 68b608ac4bd2e8724d8e03501997b0fbebc56811..045ed0c649f5232dcf1b9bb0a31b81ce3167b283 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index 3bbd50af7cec28fa0df6e687ceb9b31f76a64db0..5206bec3f8567a9e686228ce7b844c8ef55e18ab 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb index 5f710302572515b9ff700697fed00fb8a2abd76e..237e4fd6aced1573f5f4e8b466f15a797a66599a 100644 --- a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors: Kenneth Hoste (UGent), Pablo Escobar Lopez (Unibas) easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb index 10342bedf08e9c840b57a8350355ce41e929627e..1e7adc8498f094a95461a317518e5717762f1cbe 100644 --- a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors: Kenneth Hoste (UGent), Pablo Escobar Lopez (Unibas) easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb index f15a97cd309b34c52466435f604dff3b4f3dd59c..3fe029f3bdb95ad9b450e60ac485401631f95e9c 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb index 18895dbe61c12323d5f55640289c64be778b90c7..5ca90df6723974b15f03a1cc31102971fcc07ed7 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb index d375c69cbb5c85118851693efd789a286c6d7920..acee6423cd60eab4221acb39bc39cd97cb630e2d 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.1.150' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb index 4d0d75afae2914f5acf4739922f5a6cff60b7b99..c51aeed69f8b64cf3c716a88a0e509eae733e255 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb index 5c1c6d97c5481d9ba12f629bd7d636fd54c343f1..9efd4f304ac23d6d15a6b6a2c99bd0024d04c9eb 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb index 4511a57a9e080c021aa9dae539e19165b349e2f0..c834d9302460f240e86f083a88f859a20b85aa83 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb index 2192bcc50619f64c1cd66b857a5b8172002b118a..100faf73438f9b960920742bc422bcc964266299 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb index 9ce84e0f30037300a9c39401a24123eccba08fea..0e2464f37382c09846c07baf233b08cb82deacff 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb index d1cc307109d8d9fe16605c02e80172767ae155e8..41ed689a7219deafb19a8d5686f1f1b2acf6c1c8 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb index 924f53625d1f2e171833d3f65778c94428572c30..77118ae45dcb63c374afb0e02952a1f2f58fe307 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb index 39745a0399f7615b9b1776f8d91c962cc833f6c2..362d4774412d8924fa26a757d9b35310cc9c07a3 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb index cd7f8184fe42e0fd59c20f18dab66d9df6bebfbd..55411b8971664ec175e1d9472ad731a220c4f94e 100644 --- a/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/icc/icc-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'icc' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb index d51e11b54101e7a06dba334161c704515d6dbc34..fe66dc2742bf5f6cfe6e96dc18e9dc16172b727f 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb index f03bb37944e6b893b2e808e231ed29dd307c87f6..4bb42ab041793b35ce69b1a97490896a89217a5e 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb index 8bf45db5e6db12497f2b3e1b3cbc05ebe79cd7a2..cc24a9ab5464de2ad78b40130ecc5c8f5b889bf2 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb index 7fc5fd1e8fe8ba51fae723549406836ff809f9ef..297fe048543b243b2e68f681b6b238a55fee5040 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb index 0b2036c9e01267ef9a44aec49f6733ab0533c924..f2c485ee204a3252c80e6848ccdd95b5e9020471 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb index f961d74a1f11c4392557469785e099db54fdc4b1..3683fdab6eccfaee9e50e889fe89a8e2962940a4 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb index f89991b41ee5196849f4ea56b1d8be8df149dc39..0401f8025e0722e1fb639ba46d356763f0e23791 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 52e91145c61f4cc874a32be7f6bc8ab0aea9d64f..fdf3a88aa50cec3041466ede8d4bfa5596d3aee9 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb index e2ed764a7b491dc64cba92b8b67b69b54eece03f..a77c406ff7f67f96d6b5605490cc5aa06300c33c 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb index 6e347be3a272efdff29850241bffa6c2016437dc..3fc87e0a0a66994f29c1951d27f9e6e0abb48d73 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb index ea60f74334b07c4a2619c2cc50346b39e575ccb7..d4e78567c722035a9441c78b3d222a75bbd59dae 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iccifort' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb index d622580adc03cb05d6009d9b9778df758b7c4417..577b22830085d305a0d089dcc7e3db9c83eab5dd 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = 'Toolchain' name = 'iccifort' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb index a32fd8278aab33f6d38c04cd67fed509a43247aa..aabb1cd11ec2cdc64266340928e6f7e9a9f03aa7 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb index b40428eab79ccf06c682f0a146349e1905883281..d138aad0c3822e915874c8839fe091a6925714db 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.0.109' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb index fdfcf853b676c7793726b07dcaf17667d90c98a1..9b6827244115b4a72ca83a1862b5f649f165fd45 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.1.150' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb index 39dd0065521f55fc7270cb627d3a361d5ab453e3..ece99a738719345d83a0676e99484d8d11ea74a0 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb index 952e908d84556dc86f4af220772b86e73d0cb795..5bba923e8f27d962854df1dac7b7fcb20fd3b157 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.2.181' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb index 624fe2510b746c9199980ba641824cb14e265159..856da5d488016257c5713ad588bf41886fa217e8 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb index 148dc067648ae426e022a4bef20434cf1c0e9931..1204efb96480c50e452c1a52d146fcb0c0a78e7b 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb index 48e857188b4bdaab9adc156fcbc2e41010ca889d..52c45d2af4539c9a6f1648870e4ae1b4b9e0d9fb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2016.3.210' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb index 26de8ad2549f7fe4b22ea1304313e1624ddd0f5e..b49a02c89af98e5bab23641ed89c6719be7cfe0d 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb index c275933f9dd128a6b33947d0cdc2b91dc02f69b6..8f58c81952c12d1b63cc15112055bec893628582 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb index 746cfd78bf9c71244df3fe0348f57efa870f405a..215324831e65f85323b6a5b7131be9741b8dd1e1 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb index c4b671b6975410e3e902d66ea82504d58ec72d08..1d5cac3fad328a4f0128c8ab87be3d2bc34ca03c 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'ifort' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/igraph/igraph-0.7.1-intel-2016b.eb b/easybuild/easyconfigs/i/igraph/igraph-0.7.1-intel-2016b.eb index b0f9d10dbb15b768aa65039188778c0284770480..0c649171c4c4cac45ec5d17d6cba5db8486de238 100644 --- a/easybuild/easyconfigs/i/igraph/igraph-0.7.1-intel-2016b.eb +++ b/easybuild/easyconfigs/i/igraph/igraph-0.7.1-intel-2016b.eb @@ -17,7 +17,7 @@ source_urls = ['https://github.com/igraph/igraph/releases/download/%(version)s'] builddependencies = [('Autotools', '20150215')] patches = [ - 'igraph-%(version)s-no-lapack-no-blas.patch', + 'igraph-%(version)s-no-lapack-no-blas.patch', 'igraph-%(version)s-fix-aclocal-version.patch' ] diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb index 73e504fad6c83d8d3425e40d8a6c2274c1ffc7bd..44c8e6ecaac4c5390866873efac176a8380abe8a 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb index 5df1cad542eb747b126a74da8d82ff446871c7fe..476d9acb2bc6697dd5b63d62355f66144860ef1e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb index 3d1b98171457ee844aefd8a184fffccbde677e37..7878168e2e085852327cbfbb1f09c3f0ac7b98b1 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb index 9e93414ff173b03c012148d861570bd55e52ae9c..9510f7e46a47384e2a27f939654d02c9f4f1e26b 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.02-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb index f4a56beef10f27064abb8825f75baa31a377ae86..08b9b3f5070461a0c4742afd31118560e92c540a 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb index 8e5a35ceef5afc05d3bde68106758613257a709d..a8596d5825fbd05755647a5267d79f0697c73a6e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb index 8ee7c61e95bee2febd89f186b1413f2e598ee856..7ac8a1f5c15078e9101156f5595626ab11ea227e 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.03-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb index 0af3e3a3ab235793abce4ae2cd209383c6bf3314..4df51c98955ff319473e11b3515c2dee682ea0a6 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb index 1af95a3473e8e410a77be258fa04eef239dd3c89..843a2fdb37b209e88e9e6b22d6e28afb6a4612db 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.00-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb index 97332c6ea3808843f5b35431d8ce1c3f37bd00ea..cfdd91b0bf6a9af101ace8dbf8bb9e90e14a7a0c 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.01-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb index b0f86b1096f9f52cfa96332dca82ffd9371cd01c..65c861bb3f8232867b2cf6fc2043901318be0780 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017.02-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb index c272ff080320aa6c89cc578aaf2c67d9d4292e3e..14c6d0426dc841dbfd665c60cd61654b636053a2 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpi' diff --git a/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb b/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb index 33bf002bbfa5e3486c3a4c7406dd3700f76794e1..568c34ad3f466f3776d9dfc7a94c76e1b7c3857e 100644 --- a/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb +++ b/easybuild/easyconfigs/i/iimpic/iimpic-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iimpic' diff --git a/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.2.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.2.1-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..6f8572780e1266ec65f82233e067de003c02cbdb --- /dev/null +++ b/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.2.1-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'imbalanced-learn' +version = '0.2.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/scikit-learn-contrib/imbalanced-learn' +description = """imbalanced-learn is a Python package offering a number of re-sampling techniques commonly used in + datasets showing strong between-class imbalance.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.12'), + ('scikit-learn', '0.18.1', versionsuffix), +] + +options = {'modulename': 'imblearn'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb index a928de1ca420197791fd00b8d5291bdda19377dd..d58ab5dfd66189f5375cedde851c82e7a6f034e2 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.0.109' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb index 49c3e5d75baeb439558a1f018c47fc21d59ddc28..440d1741c09f18dffd86e57b2e5af0f30fd1836b 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.1.150' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb index 91dcce3df94b6e4ee8feecb70628d5940be2877a..ecf070b29cdcf4866e39cd7e1dbe4366596c23dc 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb index d1edf0b015abf516ebe2cd76890a1b34685b41a4..49091028d6ea887b7c594830f167507f2b259ab6 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-iimpi-2016.02-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb index ac3a95728c618ceefe9b60177420a7d1e02e4ef1..d468fef58aa5d0a39e39c9040bf53e51545a9a22 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.2.181-pompi-2016.03.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.2.181' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb index 0a5bb0e3eeb2c364616979d4fe7db62e52e6dd8a..229575d9aa91ba6ca0ac77116c4c9ed11ec08270 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb index 09806746b295042be535ed42ff06b174f1d104ba..5cf1169219f0fa1ae0ea5efe0811b3698dffc31b 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb index 490c4fbf4200decba44a6a2a48bc8d55710f15c7..59e82c591030a734e355fe5be0c3c82d2094b594 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016.03-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb index cce72ce10ae171c391fd9ef0f21aa0fe498ec027..71ce462a11db71f5f3d5f945d8ab55b7008ccd32 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpi-2016b.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb index 601460577a3543f1b7ebdf4f7fb7f738a1372103..78c54328f410b9035df1a7b634a05779acd77a78 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-iimpic-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb index ab281bf6b12d050ad330da9b31c2d8269442b300..c5041e44d7e57a436e4c45844584a1e267443fd5 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.04.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb index ea94f4aa6a31332cbfb3b95257e90af0538394ee..76e951f9afb8a27a6e25085d8ce5f32e05afbb2f 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.3.210-pompi-2016.09.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '11.3.3.210' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb index 341dbab7ed44ce75dbc27cd404ced266444ce737..5fdaf87f4caa74a350b8e64e291a7ffcd9c1b041 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.0.098-iimpi-2017.00-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.0.098' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-gimpi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-gimpi-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..aaa3568ab05db596ebcf358f833cf2984030a159 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-gimpi-2017a.eb @@ -0,0 +1,36 @@ +name = 'imkl' +version = '2017.1.132' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'gimpi', 'version': '2017a'} + +sources = ['l_mkl_%(version)s.tgz'] +checksums = ['7911c0f777c4cb04225bf4518088939e'] + +dontcreateinstalldir = 'True' + +license_file = HOME + '/licenses/intel/license.lic' + +interfaces = True + +postinstallcmds = [ + # extract the examples + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_cluster_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_c.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_core_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_f95.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_f.tgz -C %(installdir)s/mkl/examples/', + 'tar xvzf %(installdir)s/mkl/examples/examples_mic_c.tgz -C %(installdir)s/mkl/examples/', +] + +modextravars = { + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb index be8b68226a4ec99740c780d6ca7ef33bd9bdcbf3..8f2a455c2d3d6301e96c982c03bdcffab0aa4afd 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017.01-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb index e28e5314faf4041c8ddae896572bc4ac15aaeadd..1b5c22920c75bc7b2ea5d36dd4cede83c3347275 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iimpi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb index 1f68711972415194cddb5f1e188ffe990fdde403..470e9458e02f961d14a0209cd5486a2cc2965fd5 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb index 38909739c998fecd83b97c2da80a4f3157d719c5..a6925bd1bb23176659fd8c2ca9546a1158354e8a 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.1.132-iompi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.1.132' diff --git a/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb index 62ed8290380b10265dc88009eabc87cfeeee1a50..96112a192356f5804c43a56fc7d81ca6278e8516 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-2017.2.174-iimpi-2017.02-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'imkl' version = '2017.2.174' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb index 867202a35792cdba6f8cdb01fc904197e4cf507d..39fce39091a43160e4e0fefa22097ada0c142d09 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.0.098-iccifort-2017.0.098-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.0.098' @@ -6,7 +6,7 @@ version = '2017.0.098' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.1 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2017.0.098-GCC-5.4.0-2.26'} diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..4dafa137caaadbf5d78d7689ec537acfb06f3a41 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-GCC-5.4.0-2.26.eb @@ -0,0 +1,33 @@ +name = 'impi' +version = '2017.1.132' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 3.1 (MPI-3) specification.""" + +toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} + +sources = ['l_mpi_%(version)s.tgz'] +checksums = ['d5e941ac2bcf7c5576f85f6bcfee4c18'] + +dontcreateinstalldir = 'True' + +components = ['intel-mpi', 'intel-psxe', 'intel-imb'] + +# license file +license_file = HOME + '/licenses/intel/license.lic' + +# Set I_MPI_ variables to point at the appropriate compilers +# set_mpi_wrappers_all = True + +postinstallcmds = [ + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpich.so', + 'ln -s %(installdir)s/lib64/libmpigc4.so %(installdir)s/lib64/libmpichcxx.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libfmpich.so', + 'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libmpichf90.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpl.so', + 'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libopa.so' +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb index bebecd8cf61eca7ead1fe486b10f8cc097a5bc87..a8fce42a5386aed3bb34f29780b838199b0756e8 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.1.132' @@ -6,7 +6,7 @@ version = '2017.1.132' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.1 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2017.1.132-GCC-5.4.0-2.26'} diff --git a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb index 3193d2cc9ad9cca352af02aa63bded0cf1d2c3bc..9f5485d56cf9e84ea257d530215f8cd65cca6fff 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.1.132' @@ -6,7 +6,7 @@ version = '2017.1.132' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.1 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2017.1.132-GCC-6.3.0-2.27'} diff --git a/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb index 9375fca351ab8e8781441b71242ccd7bdf90d736..fc921279503281d3d809fed4992cd7e9cca2f1e3 100644 --- a/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb +++ b/easybuild/easyconfigs/i/impi/impi-2017.2.174-iccifort-2017.2.174-GCC-6.3.0-2.27.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '2017.2.174' @@ -6,7 +6,7 @@ version = '2017.2.174' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.1 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2017.2.174-GCC-6.3.0-2.27'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb index 209842e7274ea8cdc07f7e8cc3e27723ccfa4195..6929387be6c4c4f7e174b19f81976fbf5d2e61d6 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb @@ -4,7 +4,7 @@ version = '4.1.0.027' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb index c4e43d9fa92acd8307964353eb25ae8670fa84ed..ab6d7960f37c5acc376ff7018f5c4bec4370667e 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb @@ -4,7 +4,7 @@ version = '4.1.0.030' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013.2.146'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb index 9b5a71ce36a396a3eb9406c2ae9f3c8ff61e24d5..e04df8a4942f046132efd3d04c12e25c5449e364 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb @@ -4,7 +4,7 @@ version = '4.1.0.030' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013.3.163'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb index 36a86386a0c1929d933893f11441021f81eb08d7..0cb097158ed453e7d91198a4a8ce8f71042dfea9 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb @@ -4,7 +4,7 @@ version = '4.1.0.030' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013.4.183'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb index 3f28cb9676e068343a58137b9978e91374d97a1b..159af122db2714c50db6c768357efb78679bee11 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb @@ -4,7 +4,7 @@ version = '4.1.0.030' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb index ee1796488dc2cc27dc7a3947ac9fc26ec98600c2..be19fa00813dc0658349fb40d093d28c328b8938 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb @@ -4,7 +4,7 @@ version = '4.1.1.036' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013.5.192-GCC-4.8.3'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb index 97573c0075fae5d46bc83d5b2a4fafb1bad3ab4d..118bb8c103f3452a087487f1bbc030eecae9414e 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb @@ -4,7 +4,7 @@ version = '4.1.1.036' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013.5.192'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb index 55248460835190681a3d36a0b6d4f478c1b9a020..6f14962150bcc67390e8b68dcb07b3dfabd36a37 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb @@ -4,7 +4,7 @@ version = '4.1.1.036' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb b/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb index 53016847355b8ce89c6a378b0b1c22428411735a..dd8f68cc710f8842fec5c0a0931d3ff6ec7f52c3 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb @@ -4,7 +4,7 @@ version = '4.1.2.040' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb index 3eef4c39b603e09534b6391b808f90ca8caf4024..8841eb5e4839da356ab47f8fd4e8208ae3296519 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb @@ -4,7 +4,7 @@ version = '4.1.3.045' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013_sp1.1.106'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb index de266ab029ce987ec62d1ac325bb76e794280939..53f0e552117a5f2150a98c1d3388e97aae050038 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb @@ -4,7 +4,7 @@ version = '4.1.3.045' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb index 81b707143d7bc1d9fa835f690b35b41aadd7297f..f9f2e4473631d493c73a3a52e84a94b9c92bee69 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb @@ -4,7 +4,7 @@ version = '4.1.3.049' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'GCC', 'version': '4.8.3'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb index 91e7ec80d3959b8c18528ca4d0cb325ae8e9a47c..db7602586fa24f11e7adac0f6b88b0319b1e9aa2 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb @@ -4,7 +4,7 @@ version = '4.1.3.049' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013.5.192-GCC-4.8.3'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb index 3b51024f129eaa183dbe59c28d20b7325ec83627..3970ddc4767ed0649ad4769b0cecd8f09ffeacc9 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb @@ -4,7 +4,7 @@ version = '4.1.3.049' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'iccifort', 'version': '2013_sp1.2.144'} diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb index 7b345a78e734e6545ee7dbc855c9799c92080d40..8b558e1f1c21766439af01cb7326291a2b3691ae 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb @@ -4,7 +4,7 @@ version = '4.1.3.049' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 2.2 (MPI-2) specification.""" toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb index 154d705ccf3a683ba65c3ca2aba457d77123d18a..68543c277e40723dddd903949aec6a2dbc9fa38e 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '5.0.1.035' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.0.090-GCC-4.9.2'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb index 952a3f2313389457475e435f4d2b65c896b9e68e..f8d4105279396cb014ff412ceb803333b0a1bcab 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb @@ -4,7 +4,7 @@ version = '5.0.1.035' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.0.090'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb index 62a9caf2eeb7fe3dfa6b60ea4bdec4447303cdbc..42da75af9c89359ce8dfc2a928a3ed082c3893f2 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '5.0.2.044' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb index 46722880e780ed3a1416d3c6b5ce15bbed7b538c..c9221491ef00517b4b4955d215fd4b4f863a1b5d 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb @@ -4,7 +4,7 @@ version = '5.0.3.048' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'GCC', 'version': '4.9.3'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb index 452ab3ddd5dbaf91c9ecd99e6027b80fe2ca2853..8a9edd8c8882adcf9777b0dc6e2351bb326f8da2 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '5.0.3.048' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.2.164-GCC-4.9.2'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 7de5ce16aa9c9b9bd97c902903a126f435b0a731..b10c36dc278bf6872027d54f3b70227210c32805 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -4,7 +4,7 @@ version = '5.0.3.048' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.3.187-GNU-4.9.3-2.25'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb index 51baff5e351e103b64f378277c0905bcd335805a..ea4314e4dc7b513d0f455869a7f2da0691ad76e4 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb @@ -4,7 +4,7 @@ version = '5.0.3.048' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.3.187'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb index 51936e972d63eb0827fc2fb72b37233d4cba4319..66832f4bcef53a1ddb5296ad1461152f24568af3 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb @@ -4,7 +4,7 @@ version = '5.1.0.079' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.3.187'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb index 8d146fd342b61c67594eb2f3cdcc1d9c1a1a712d..d09b33f6791563b8d802cf2d05907120da64fba9 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.1.109-iccifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.1.109' @@ -6,7 +6,7 @@ version = '5.1.1.109' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.0.109-GCC-4.9.3-2.25'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb index af79fd719080b8f72851f1957106d9fb0bf57dea..562b27bc40a5b71b796a5a5077756e6b857c4396 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb @@ -4,7 +4,7 @@ version = '5.1.2.150' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2015.5.223-GCC-4.9.3-2.25'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb index 6042d117f676b54742c1a13292535395fff03552..137847dcf7c9b3d8e7b7c3d16470ab785917bb84 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.2.150' @@ -6,7 +6,7 @@ version = '5.1.2.150' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.1.150-GCC-4.9.3-2.25'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb index 845f7631f8464ecaf93c49c7ece224008c0897ec..08aa97c8f61bd454fe484f0343997ee1a9d9bbf9 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' @@ -6,7 +6,7 @@ version = '5.1.3.181' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.2.181-GCC-4.9.3-2.25'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb index eaf9a3b7a7f8919345981dd160591167eb6dc260..a1e94bdfa1dcea188bd9a2e99779aa3c2c6c97b3 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.2.181-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' @@ -6,7 +6,7 @@ version = '5.1.3.181' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.2.181-GCC-5.3.0-2.26'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb index 56d81448bff58bb1cdaa85ab6c0c0edc3b9e5f14..3d597f449e23a514f8b9d505121894f2bd4fa873 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' @@ -6,7 +6,7 @@ version = '5.1.3.181' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-4.9.3-2.25'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb index cc0d58235f6186c6d5a9fe81c45943e0287deaa1..121e9258f27cbb8afeda0ab8d6233e7b28b3fb68 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' @@ -6,7 +6,7 @@ version = '5.1.3.181' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.3.0-2.26'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb index 565380f44c465ac127ade7010c2e84ee92ab0c2d..e74cd02b1bdfbd423f652bf470f08780543d902f 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' @@ -6,7 +6,7 @@ version = '5.1.3.181' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb index 292b8c704ec50e0ee9b6468c87fe3a124b9aa947..f3e312361a5fbdd0b169298a756fd7bdbaceed5b 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.3.181-iccifortcuda-2016.10.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ name = 'impi' version = '5.1.3.181' @@ -6,7 +6,7 @@ version = '5.1.3.181' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for - Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + Linux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.""" toolchain = {'name': 'iccifortcuda', 'version': '2016.10'} diff --git a/easybuild/easyconfigs/i/intel/intel-2016.00.eb b/easybuild/easyconfigs/i/intel/intel-2016.00.eb index 2f03a7cc46ed2e2d8ca5b359fba60d79a701b82a..5010692164ff34ff81e174d75a9d557646adb46c 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.00.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.00.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'intel' diff --git a/easybuild/easyconfigs/i/intel/intel-2016.01.eb b/easybuild/easyconfigs/i/intel/intel-2016.01.eb index 7c51ee293844b88cf6c2832931f44ba596f9e0bc..bbcac55ebc37e5eb084b9713f30f7b22fc2be494 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.01.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'intel' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb index 9580ff5296df326b72ed4d0e3bca4e9988aaed23..f69ecfb47aa69fc9b7d281ad7f53a94a59c73a85 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-4.9.3-2.25.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2016.3.210-GCC-4.9.3-2.25' dependencies = [ - ('OpenMPI', '1.10.4', '', ('iccifort', compver)), ('icc', compver), ('ifort', compver), + ('OpenMPI', '1.10.4', '', ('iccifort', compver)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb index db8c7fb2afb5a96e5fa64b157417145656eff4ef..7a279c30c60ee7194b30db3e01d237fe23e99b29 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2016.09-GCC-5.4.0-2.26.eb @@ -11,9 +11,9 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2016.3.210-GCC-5.4.0-2.26' dependencies = [ - ('OpenMPI', '1.10.3', '', ('iccifort', compver)), ('icc', compver), ('ifort', compver), + ('OpenMPI', '1.10.3', '', ('iccifort', compver)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb index 9c2c6b52a508a319a390ae535be556f7fe6b0dd4..cf97e1f426a33370fab2c2fcfe377a70f436ed15 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017.01.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iompi' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2017a.eb b/easybuild/easyconfigs/i/iompi/iompi-2017a.eb index 571b319a14d045c067f510b6ab722fabff93e36b..f5e1679c27d8d3304004df113ce2167a90f28ed1 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2017a.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2017a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see http://hpcugent.github.io/easybuild +# This is an easyconfig file for EasyBuild, see https://easybuilders.github.io/easybuild/ easyblock = "Toolchain" name = 'iompi' diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb index d0c11088720ecb2ffd4e9ae566d9cc388e72a6a1..076891eb8427ee30f65f62688f86160366da3a0c 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb index 9e1ed006d540b8c1df786dfc450dacaa29647008..adaf15166d5a61e624ca5a5db7b595f5239bd51b 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb index 76755f474c05c93b67b16766b62b0a7bc0df9870..38931e456f84faabdc9282f93c9f7d0996f9d044 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb index b168dd347edbce51532b5cb6a85b19ba9cf7b50e..9d8a457376effc46f17594598cf1c33f571e5359 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb index 1474dde18b67235d6ad742edac1b6185daa4e4bd..ff82e5fae959e1f214c1ee2f58201f57c11663cf 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..946cc65fab78853bce6191a8eb32860d4c7d8f1d --- /dev/null +++ b/easybuild/easyconfigs/j/JAGS/JAGS-4.2.0-intel-2017a.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'JAGS' +version = '4.2.0' + +homepage = 'http://mcmc-jags.sourceforge.net/' +description = """JAGS is Just Another Gibbs Sampler. It is a program for analysis + of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation """ + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [('http://sourceforge.net/projects/mcmc-jags/files/JAGS/%(version_major)s.x/Source/', 'download')] +sources = [SOURCE_TAR_GZ] +checksums = ['af3e9d2896d3e712f99e2a0c81091c6b08f096650af6aa9d0c631c0790409cf7'] + +configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' + +sanity_check_paths = { + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.%s" % SHLIB_EXT], + 'dirs': [] +} + +modextrapaths = { + 'JAGS_INCLUDE': 'include/JAGS', + 'JAGS_LIB': 'lib', +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-foss-2017a.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-foss-2017a.eb index 73e404db1ce13b93374268b72faa452dc3dee747..1d4d9ee5431a52fd43b9c0cbf928b78dbc467154 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-foss-2017a.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-foss-2017a.eb @@ -19,4 +19,3 @@ sanity_check_paths = { } moduleclass = 'vis' - diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b2d812f323378bd185b0078e1d5cf1a900c7d20d --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'CMakeMake' + +name = 'JasPer' +version = '2.0.12' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' + +description = """ + The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in + the JPEG-2000 Part-1 standard. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['5b24faf5ed38670d6286e45ab7516b26458d05e7929b435afe569176765f4dda'] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +separate_build_dir = True + +configopts = '-DJAS_ENABLE_DOC=OFF ' + +sanity_check_paths = { + 'files': ['bin/jasper', 'lib64/libjasper.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-foss-2016b.eb b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c6d030f5e7a0d06c98266beab133278bd4adc33a --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-2.0.12-foss-2016b.eb @@ -0,0 +1,25 @@ +easyblock = 'CMakeMake' + +name = 'JasPer' +version = '2.0.12' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +builddependencies = [('CMake', '3.7.2')] + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/jasper', 'lib64/libjasper.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_131.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_131.eb new file mode 100644 index 0000000000000000000000000000000000000000..2bb2551e956a7df0ffa79da85a8599aecd44e4d7 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_131.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_131' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ecb4ab81cc40d6553c453b3c074e7b519521e77 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_141.eb @@ -0,0 +1,20 @@ +name = 'Java' +version = '1.8.0_141' + +homepage = 'http://java.com/' + +description = """ + Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from +# http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] +checksums = ['041d5218fbea6cd7e81c8c15e51d0d32911573af2ed69e066787a8dc8a39ba4f'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc8a2bb0a1a250925a0315b42572d79fb315595a --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_144.eb @@ -0,0 +1,20 @@ +name = 'Java' +version = '1.8.0_144' + +homepage = 'http://java.com/' + +description = """ + Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from +# http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] +checksums = ['e8a341ce566f32c3d06f6d0f0eeea9a0f434f538d22af949ae58bc86f2eeaae4'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb index 8e2a518511e709daf5f8565c76a99578c30538ca..6ff63e83c057339b60ce0a075dd0a3eb70daa807 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb index 6acf8320e79289b0f4306a193b1963c65cdb776a..a27ec31e2601157c2b866bcf75fdc12f1ed4f5d6 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-1.1.11-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb index bd77b8e773e08f359083cb4fae7603cc6e9b2004..6db319bc1832bdfaef8d21742acd54bd91be9f12 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-foss-2014b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb index e874c0503026a44dbee2ecc595f8b54b422f12c6..948d483703e681c462f8f20868b4c2df4435165a 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb index 5e170ee4c542fbc013c66ce4678aece3d6e54600..c33284a909e6165550a4e7f0f64a0ae62f03e809 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.3-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb index ff49f091da98425a8b32389beb028f8a42dacf73..9c8c9774622f97c37f08a19ab6d28bcc9199cd27 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb index 01b9cb403dfaece9f8cdb4d52e662cffc9820086..d8949f35fa4b4f862e9cb1f5d585adb07d19ae70 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d5a896eea22718781e9cbd81fbe728be06d02d38 --- /dev/null +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-foss-2016b.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'Jellyfish' +version = '2.2.6' + +homepage = 'http://www.genome.umd.edu/jellyfish.html' +description = """ Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/gmarcais/Jellyfish/releases/download/v%(version)s'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e'] + +parallel = 1 + +# The tests for the Bloom filter are statistical tests and can randomly fail, they actually don't make a lot of sense +runtest = "check GTEST_FILTER=-'*Bloom*'" + +postinstallcmds = ["cp config.h %(installdir)s/include/%(namelower)s-%(version)s/%(namelower)s/"] + +sanity_check_paths = { + 'files': ['bin/jellyfish'], + 'dirs': [] +} + +modextrapaths = {'CPATH': 'include/%(namelower)s-%(version)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb index 09aa380fc622d13b62213af965a1353c81f26310..1696c554aa46fd7bda4d12d73f22c7ab076cbe8c 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.6-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb index 4dba96087d9e1af1bffc9a93ea41ea30a0cf573e..e619e71cb48f47728975c4664d07c57aa6940746 100644 --- a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb +++ b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.10r20160303-Java-1.8.0_92.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -29,7 +29,7 @@ install_cmd = "cd jmodeltest2-%(version)s && ant -Ddist.dir=%(installdir)s jar" modloadmsg = "To execute jModelTest run: java -jar $EBROOTJMODELTEST/jModelTest.jar\n" sanity_check_paths = { - 'files': ['jModelTest.jar'], + 'files': ['jModelTest.jar'], 'dirs': [], } diff --git a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb index 37a4b9dd9abf3227d611a7125a108d1b3c96b635..dafa45afa9598e29bfc48ddf4fe314461384ff57 100644 --- a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb +++ b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -29,7 +29,7 @@ install_cmd = "cd jmodeltest2-%(version)s && ant -Ddist.dir=%(installdir)s jar" modloadmsg = "To execute jModelTest run: java -jar $EBROOTJMODELTEST/jModelTest.jar\n" sanity_check_paths = { - 'files': ['jModelTest.jar'], + 'files': ['jModelTest.jar'], 'dirs': [], } diff --git a/easybuild/easyconfigs/j/jhbuild/jhbuild-3.15.92-GCCcore-4.9.3.eb b/easybuild/easyconfigs/j/jhbuild/jhbuild-3.15.92-GCCcore-4.9.3.eb index b2f1cf65eb7bd22f80852cc42e83e0f97cbc94f6..401fa1f345d0586488c692bbcd26075f05b044fc 100644 --- a/easybuild/easyconfigs/j/jhbuild/jhbuild-3.15.92-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/j/jhbuild/jhbuild-3.15.92-GCCcore-4.9.3.eb @@ -36,7 +36,7 @@ dependencies = [ # to avoid unnecessary dependencies. This requires us to build in the install dir so that all libs are found. buildininstalldir = True skipsteps = ['configure'] -prebuildopts = './autogen.sh --prefix=%(installdir)s &&' +prebuildopts = './autogen.sh --prefix=%(installdir)s &&' # Make sure there are no "not found" in the sanitycheck output sanity_check_commands = [('! jhbuild', 'sanitycheck| grep not\ found')] diff --git a/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..b4756636047db0a46c5299f0d5448a0295b130c6 --- /dev/null +++ b/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'Keras' +version = '2.0.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://keras.io/' +description = """Keras is a minimalist, highly modular neural networks library, written in Python and +capable of running on top of either TensorFlow or Theano.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.13'), + ('Theano', '0.9.0', versionsuffix), + ('h5py', '2.7.0', '%(versionsuffix)s'), + ('PyYAML', '3.12', versionsuffix), +] + +# it defaults to Tensorflow +modextravars = {'KERAS_BACKEND': 'theano'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-3.6.1.eb index 45f0be1e646a0e2fc438145a3ab3052d760ba71d..d338fae1c932f1b007dc0f89d9cc6b01b0c0d279 100644 --- a/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/k/Keras/Keras-2.0.4-intel-2017a-Python-3.6.1.eb @@ -20,6 +20,9 @@ dependencies = [ ('PyYAML', '3.12', versionsuffix), ] +# it defaults to Tensorflow +modextravars = {'KERAS_BACKEND': 'theano'} + sanity_check_paths = { 'files': [], 'dirs': ['lib/python%(pyshortver)s/site-packages'], diff --git a/easybuild/easyconfigs/k/Keras/Keras-2.0.5-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/k/Keras/Keras-2.0.5-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..105d38b643c705dbc321d4eaf8c516ee90c590d5 --- /dev/null +++ b/easybuild/easyconfigs/k/Keras/Keras-2.0.5-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'Keras' +version = '2.0.5' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://keras.io/' +description = """Keras is a minimalist, highly modular neural networks library, written in Python and +capable of running on top of either TensorFlow or Theano.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '3.6.1'), + ('Theano', '0.9.0', versionsuffix), + ('h5py', '2.7.0', '%(versionsuffix)s'), + ('PyYAML', '3.12', versionsuffix), +] + +# it defaults to Tensorflow +modextravars = {'KERAS_BACKEND': 'theano'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..54e8f3a22660b62b57cc7af566048debe6eeea60 --- /dev/null +++ b/easybuild/easyconfigs/k/kallisto/kallisto-0.43.1-foss-2016b.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'kallisto' +version = '0.43.1' + +homepage = 'http://pachterlab.github.io/kallisto/' +description = """kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally + of target sequences using high-throughput sequencing reads.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/pachterlab/kallisto/archive/'] +sources = ['v%(version)s.tar.gz'] + +checksums = ['7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400'] + +builddependencies = [('CMake', '3.7.2')] + +dependencies = [('HDF5', '1.8.18')] + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/kallisto'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb index a821aa77f2956ea7ee6facad0f12a37e92bf4290..2d87b632b4d177fc8b705d32fb904e065944f565 100644 --- a/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/k/khmer/khmer-1.1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb index 68addbe81706d6001f8a410ccd5e845f1deb0a48..5e1eea59c24691eaa2e0fa8c56744885fa595343 100644 --- a/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/k/khmer/khmer-1.4.1-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb index a1da0d2c9035d2f509ed1ae8512dea8d60d94a80..d087299b3c40c46127b7994dbf2461ab1903d14d 100644 --- a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f61518de915d3c07289b90b2796f856ea6c519af --- /dev/null +++ b/easybuild/easyconfigs/l/LAME/LAME-3.99.5-foss-2016b.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Author: Stephane Thiell +### + +easyblock = 'ConfigureMake' + +name = 'LAME' +version = '3.99.5' + +homepage = 'http://lame.sourceforge.net/' +description = """LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://sourceforge.net/projects/lame/files/lame/%(version_major_minor)s/'] + +dependencies = [('ncurses', '6.0')] + +# configure is broken: add workaround to find libncurses... +configure_cmd_prefix = "FRONTEND_LDADD='-L${EBROOTNCURSES}/lib' " + +sanity_check_paths = { + 'files': ['bin/lame', 'include/lame/lame.h', 'lib/libmp3lame.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb b/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb index d7a88ce495d30a705dfbcc9e541915c8be8ce408..64d822c4497c1abea2bc0d0f68e83b2306a7afa0 100644 --- a/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/LASTZ/LASTZ-1.02.00-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-foss-2015a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2b4d52c46c6e53d69501b010aff6db9838e050c8 --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-foss-2015a.eb @@ -0,0 +1,33 @@ +name = "LLVM" +version = "3.7.1" + +homepage = 'http://llvm.org' +description = """A collection of modular and reusable compiler and toolchain technologies""" +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {} + +easyblock = 'ConfigureMake' + +sources = ['%(namelower)s-%(version)s.src.tar.xz'] +source_urls = ['http://llvm.org/releases/%(version)s'] + +builddependencies = [ + ('Python', '2.7.9'), +] + +# No build allowed in source dir +preconfigopts = "[ ! -e build ] && mkdir build && cd build &&" +configure_cmd_prefix = '../' + +# For llvmpy / Numba: +configopts = '--enable-optimized --enable-pic --enable-shared' +prebuildopts = 'cd build && REQUIRES_RTTI=1' + +preinstallopts = 'cd build &&' + +sanity_check_paths = { + 'files': ["lib/libLLVMCore.a", "include/llvm-c/Core.h"], + 'dirs': ["include/llvm", ] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.9.1-foss-2017a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.9.1-foss-2017a.eb index 6bffed00986aaa55032328b12162645ae8ea4f45..7666df6063da5a4a516fe9435c1d213c767f6686 100644 --- a/easybuild/easyconfigs/l/LLVM/LLVM-3.9.1-foss-2017a.eb +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.9.1-foss-2017a.eb @@ -41,4 +41,3 @@ sanity_check_paths = { separate_build_dir = True moduleclass = 'compiler' - diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-4.0.0-foss-2017a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-4.0.0-foss-2017a.eb index 5a2a5553d59ef97d42cb991d6c79ab6e6a5ae6eb..d9e41a14601634050c9ef9121fe843ff2b7c5a53 100644 --- a/easybuild/easyconfigs/l/LLVM/LLVM-4.0.0-foss-2017a.eb +++ b/easybuild/easyconfigs/l/LLVM/LLVM-4.0.0-foss-2017a.eb @@ -41,4 +41,3 @@ sanity_check_paths = { separate_build_dir = True moduleclass = 'compiler' - diff --git a/easybuild/easyconfigs/l/LSMS/LSMS-3_rev237-foss-2016a.eb b/easybuild/easyconfigs/l/LSMS/LSMS-3_rev237-foss-2016a.eb index b39dd8a48bbb3e57dd2371c5c9d9842fa628031c..4e067fb22eb57a8d57257212696bbf2276392dac 100644 --- a/easybuild/easyconfigs/l/LSMS/LSMS-3_rev237-foss-2016a.eb +++ b/easybuild/easyconfigs/l/LSMS/LSMS-3_rev237-foss-2016a.eb @@ -6,7 +6,7 @@ version = '3_rev237' homepage = 'https://asc.llnl.gov/CORAL-benchmarks/#lsms' description = "LSMS benchmark, part of CORAL suite" -toolchain = {'name': 'foss', 'version': '2016a' } +toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['https://asc.llnl.gov/CORAL-benchmarks/Science/'] sources = ['%(name)s_%(version)s.tar.bz2'] @@ -27,5 +27,5 @@ sanity_check_paths = { 'files': ['bin/lsms', 'bin/wl-lsms'], 'dirs': [], } - + moduleclass = 'tools' diff --git a/easybuild/easyconfigs/l/LUMPY/LUMPY-0.2.13-foss-2016b.eb b/easybuild/easyconfigs/l/LUMPY/LUMPY-0.2.13-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a301016ab044bd664610116c82ba839a8e109093 --- /dev/null +++ b/easybuild/easyconfigs/l/LUMPY/LUMPY-0.2.13-foss-2016b.eb @@ -0,0 +1,34 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: MIT +# +# Notes:: +## + +easyblock = 'MakeCp' + +name = 'LUMPY' +version = '0.2.13' + +homepage = 'https://github.com/arq5x/lumpy-sv' +description = """A probabilistic framework for structural variant discovery. +""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/arq5x/lumpy-sv/archive/'] +sources = ['%(version)s.tar.gz'] + +files_to_copy = [(['bin/*'], 'bin'), 'data', 'LICENSE'] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['lumpy', 'lumpyexpress']], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb index 18cafee30459d42be1e1875e7ac12d7bf0a37a2c..fa8505d85c15884f149957e586c3f6da476daecc 100644 --- a/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LWM2/LWM2-1.1-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 82b1a9bd7b38c44492a92f66060823e101955a1d..47a560f2ccc9226b31ee4aae6195a3405a832cf5 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index 5b7a6a1f5c6cac6779c4402d8c2e5dea42fa3f2e..8aa4e392feb809e4cbb0a803a60ad3010bdabee4 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb b/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb index 6e7ff8a59616911358f279418b32a22124067281..9e716ad72ccd3452ba75054e7caba4f546c1f0b0 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.09-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb b/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb index 801057a84fa90dcb07a4f77b08cb1e37c0f00c33..161e209f297bc7ec80a1b5f737d04be7f7f47a9f 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.10-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb b/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb index 27a91f92c02cab36da3882280f50f41b0feefa2b..4232098544281b9be9ce64253539750b3018a04c 100644 --- a/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb +++ b/easybuild/easyconfigs/l/LeadIT/LeadIT-2.1.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 9875af8f6360df321065e6e034ce500c40fae001..73513a342dcad24609f7c5ac9fd9de3cc4d4063a 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -18,13 +18,15 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'goolf', 'version': '1.4.10'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.7.20.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.7.20.eb index 46a3c3ee49fd8d5df3ad41acd37397ff284c70fb..1496187e7bbce40f982aab185d9554d0623acac9 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.7.20.eb @@ -6,13 +6,15 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'goolf', 'version': '1.7.20'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'goolf', 'version': '1.7.20'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index 87e3b72f573d285fdd0c5d0f4785f82461a5f6f0..c9a462f4f40a282b36d1c178aa3c64d8a1c73010 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -18,13 +18,15 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'ictce', 'version': '5.3.0'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'ictce', 'version': '5.3.0'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb index e29ed51d54a3e8d8fa6a052963032a210439e63c..a27f793005a4e7fb0bdd88bc5849fa948b0e13af 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -17,13 +17,15 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'intel', 'version': '2014.06'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'intel', 'version': '2014.06'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb index a06a26e3be8170e572f1f7e458e27cc5849265b1..8db6c03653aeb65c8d649de9447909d84a96e5b3 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -17,13 +17,15 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'intel', 'version': '2014b'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'intel', 'version': '2014b'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb index 36759b619b627fbe18181c72f383bcaa46536fd9..c0287c6b3ad3cd0b42424f434f6cf5db080001b7 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -17,6 +17,8 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'intel', 'version': '2015a'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', @@ -24,7 +26,7 @@ source_urls = [ sources = ['tiff-%(version)s.tar.gz'] checksums = ['051c1068e6a0627f461948c365290410'] -toolchain = {'name': 'intel', 'version': '2015a'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb index 245af77e27e00223d49c3c29f2b1194d8ee01ba2..4efb1e7e062634a696088769d9c2b1a22acede64 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -17,6 +17,8 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +configopts = " --enable-ld-version-script " + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb index 70578c5f23ecd7eae1d286fe27ec6f9160d09924..c4f46971bfb80836951fb436fbec8a9328d15f93 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-foss-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -26,6 +26,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-goolf-1.7.20.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-goolf-1.7.20.eb index 8858538d5aefcfa8f7fa47729bc16a6769daee8d..a8769ecc26c34c7136af093e0ddf70594d49ad14 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-goolf-1.7.20.eb @@ -6,13 +6,15 @@ version = '4.0.4' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'goolf', 'version': '1.7.20'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'goolf', 'version': '1.7.20'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb index 6b0d237d173faa8e8c9cbc79a3d8ab1c2d8af7fe..01eb7c0c93f562bb356c9618e68358a648626620 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4-intel-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -26,6 +26,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb index accbb2bb0a71dcbc746fb52a30f151707c1e2fcc..4b2b2093c48e4606360d14742e026fc42abefdb3 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-foss-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -19,13 +19,15 @@ version = '4.0.4beta' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'foss', 'version': '2015a'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'foss', 'version': '2015a'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb index a1149ab376065dbe858f165d7e48502e15417580..3dc8674fdfbda212cf2afa35331c88aa082b47a4 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -18,13 +18,15 @@ version = '4.0.4beta' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" +toolchain = {'name': 'intel', 'version': '2015a'} + source_urls = [ 'http://download.osgeo.org/libtiff/', 'ftp://ftp.remotesensing.org/pub/libtiff/', ] sources = ['tiff-%(version)s.tar.gz'] -toolchain = {'name': 'intel', 'version': '2015a'} +configopts = " --enable-ld-version-script " sanity_check_paths = { 'files': ['bin/tiffinfo'], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb index 68f9ad3dc97fc0d8db8af1ad630c8f88b647f312..382c881a95ca30834e0411838fbf2b8686a30047 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb @@ -1,6 +1,6 @@ # Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos @@ -26,6 +26,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb index d7aa3b2df4bd6dcc6ecb234794f355d42815bd74..76688580b9aa159fd2383938901a439cf06a4e45 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) @@ -25,6 +25,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb index 07fa7682edf77f542e46a009b0bf33d41f846393..a98972105efc8be72c7234118cbf057af6cdfd2e 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) @@ -25,6 +25,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb index ed490e66de6f7d517217c815e217ea5fd187210a..fda1e3ceb59450993200dec4010625fe1da1d683 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) @@ -25,6 +25,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb index d8f291e4e8f30afe990e7b24afbc22407475aac7..cb758aec72667ff6d77c8b7fe9ece0e7ce3f5400 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) @@ -25,6 +25,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..49f589e6d458b0dc84c33c2a62fa5a2a2e166226 --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-foss-2016b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Alan O'Cais (JSC) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +version = '4.0.7' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] +sources = ['tiff-%(version)s.tar.gz'] + +configopts = " --enable-ld-version-script " + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb index 9087c14aa4e6c72a983006293303c5bf4210ead5..bc88218600dc669b47987336926b8faaf0e5e175 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.7-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Alan O'Cais (JSC) @@ -25,6 +25,8 @@ source_urls = [ ] sources = ['tiff-%(version)s.tar.gz'] +configopts = " --enable-ld-version-script " + sanity_check_paths = { 'files': ['bin/tiffinfo'], 'dirs': [], diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1c395504ccecba59a65aa9000d1798a6af6ed97 --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.8-intel-2017a.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Alan O'Cais (JSC) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +version = '4.0.8' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] +sources = ['tiff-%(version)s.tar.gz'] + +configopts = " --enable-ld-version-script " + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9ba6bc305ad8423704f36887bdec3b44c648aafd --- /dev/null +++ b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-GCCcore-6.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'LibUUID' +version = '1.0.3' + +homepage = 'http://sourceforge.net/projects/libuuid/' + +description = """Portable uuid C library""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['46af3275291091009ad7f1b899de3d0cea0252737550e7919d17237997db5644'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/uuid/uuid.h', 'lib/libuuid.a', + 'lib/libuuid.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2017a.eb b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a50ce3901e77589cc9c424957178cd38297918ad --- /dev/null +++ b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2017a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'LibUUID' +version = '1.0.3' + +homepage = 'http://sourceforge.net/projects/libuuid/' +description = """Portable uuid C library""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/uuid/uuid.h', 'lib/libuuid.a', 'lib/libuuid.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb b/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb index f0951b2b358a8a861db8e1aab7a8f0f02d723a0e..32aac5dd56d25d7267453f4b865a06ed1ba4bccb 100644 --- a/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb +++ b/easybuild/easyconfigs/l/LinBox/LinBox-1.4.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipe; see https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipe; see https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2016 Riccardo Murri # Authors:: Riccardo Murri diff --git a/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..fda360d04dade33b7f0d01b4a676fca97c2f16b3 --- /dev/null +++ b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'LittleCMS' +version = '2.8' + +homepage = 'http://www.littlecms.com/' + +description = """ + Little CMS intends to be an OPEN SOURCE small-footprint color management + engine, with special focus on accuracy and performance. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://sourceforge.net/projects/lcms/files/lcms/%(version)s/'] +sources = ['lcms2-%(version)s.tar.gz'] +checksums = ['66d02b229d2ea9474e62c2b6cd6720fde946155cd1d0d2bffdab829790a0fb22'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libjpeg-turbo', '1.5.2'), +] + +sanity_check_paths = { + 'files': ['bin/jpgicc', 'bin/linkicc', 'bin/psicc', 'bin/transicc', + 'include/lcms2.h', 'include/lcms2_plugin.h', 'lib/liblcms2.a', + 'lib/liblcms2.%s' % SHLIB_EXT, 'lib/pkgconfig/lcms2.pc'], + 'dirs': ['share/man'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-foss-2016b.eb b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c553697d743233e0f8c8b496d3e5d5080f050f90 --- /dev/null +++ b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.8-foss-2016b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'LittleCMS' +version = '2.8' + +homepage = 'http://www.littlecms.com/' +description = """ Little CMS intends to be an OPEN SOURCE small-footprint color management engine, + with special focus on accuracy and performance. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://sourceforge.net/projects/lcms/files/lcms/%(version)s/'] +sources = ['lcms2-%(version)s.tar.gz'] + +dependencies = [('libjpeg-turbo', '1.5.0')] + +sanity_check_paths = { + 'files': ['bin/jpgicc', 'bin/linkicc', 'bin/psicc', 'bin/transicc', 'include/lcms2.h', 'include/lcms2_plugin.h', + 'lib/liblcms2.a', 'lib/liblcms2.%s' % SHLIB_EXT, 'lib/pkgconfig/lcms2.pc'], + 'dirs': ['share/man'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb b/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb index 5abfa7b4da3d5ecf8b1d05f87b2a8e177d34ed80..cb155b9c9f5cbea17cb1f7d8d4f122eb5c1fa615 100644 --- a/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/lbzip2/lbzip2-2.5-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb index 3ee23b3ce7ad31227473644204a71e6fb917ebad..3870f8d2033c16fc776f995d953b94e2bbc7c1d2 100644 --- a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # ## diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index d1eb5179b8511d6649ba1a59e8a7a2acd54a92dd..d656d8a7e25bcca6e44cee678f51f0d4711e4886 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb index f9975e31e2983291b5753b4308132d42608cc57c..0e5f0b7f04b7d6c1ff457076661ce3ce85b77a35 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.6.4-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2015a-Mesa-11.2.1.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2015a-Mesa-11.2.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffcaba3d5695b80e3f72e5614bbb75d37c8f31c7 --- /dev/null +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2015a-Mesa-11.2.1.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libGLU' +version = '9.0.0' + +homepage = 'ftp://ftp.freedesktop.org/pub/mesa/glu/' +description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """ + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/'] +sources = ['glu-%(version)s.tar.bz2'] + +mesa_ver = '11.2.1' +versionsuffix = '-Mesa-%s' % mesa_ver + +dependencies = [ + ('Mesa', mesa_ver), +] + +sanity_check_paths = { + 'files': ['lib/libGLU.so.1'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9619bd114d9a14e0f9601daa65438f2ec5b06400 --- /dev/null +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-foss-2017a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libGLU' +version = '9.0.0' + +homepage = 'ftp://ftp.freedesktop.org/pub/mesa/glu/' +description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """ + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/'] +sources = ['glu-%(version)s.tar.bz2'] +checksums = [ + '1f7ad0d379a722fcbd303aa5650c6d7d5544fde83196b42a73d1193568a4df12', # glu-9.0.0.tar.bz2 +] + +dependencies = [ + ('Mesa', '17.0.2'), +] + +sanity_check_paths = { + 'files': ['lib/libGLU.so.1'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb index b4b7228f141c1df4d289e4fc638759310a02ab76..f715404402ce64619118abf19d1a81972fd006ab 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb @@ -20,7 +20,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb index 2316d701754fa9d8606d268e9e6cdc816551c96c..22b46c1c3e723e3da788e239455daa7e0d2076e5 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb @@ -20,7 +20,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5489e38fa7a4e051a5931ea2818428333aeb3bba --- /dev/null +++ b/easybuild/easyconfigs/l/libcerf/libcerf-1.5-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libcerf' +version = '1.5' + +homepage = 'http://apps.jcns.fz-juelich.de/doku/sc/libcerf' + +description = """ + libcerf is a self-contained numeric library that provides an efficient and + accurate implementation of complex error functions, along with Dawson, + Faddeeva, and Voigt functions. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://apps.jcns.fz-juelich.de/src/libcerf/', + 'http://apps.jcns.fz-juelich.de/src/libcerf/old', +] +sources = [SOURCE_TGZ] +checksums = ['e36dc147e7fff81143074a21550c259b5aac1b99fc314fc0ae33294231ca5c86'] + +builddependencies = [ + ('Autotools', '20170619'), + ('binutils', '2.28'), + ('libtool', '2.4.6'), +] + +sanity_check_paths = { + 'files': ['lib/libcerf.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/l/libcerf/libcerf-1.5-intel-2017a.eb b/easybuild/easyconfigs/l/libcerf/libcerf-1.5-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3c7483ca6e26cbf191575ad51b20ac122266173b --- /dev/null +++ b/easybuild/easyconfigs/l/libcerf/libcerf-1.5-intel-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libcerf' +version = '1.5' + +homepage = 'http://gnuplot.sourceforge.net/' +description = """libcerf is a self-contained numeric library that provides an efficient and accurate + implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TGZ] +source_urls = [ + 'http://apps.jcns.fz-juelich.de/src/libcerf/', + 'http://apps.jcns.fz-juelich.de/src/libcerf/old', +] + +builddependencies = [ + ('Autotools', '20150215'), + ('libtool', '2.4.6'), +] + +sanity_check_paths = { + 'files': ['lib/libcerf.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/l/libdap/libdap-3.18.1-intel-2017a.eb b/easybuild/easyconfigs/l/libdap/libdap-3.18.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..437ea556cf8b91d3024138cbf0f0e79899461160 --- /dev/null +++ b/easybuild/easyconfigs/l/libdap/libdap-3.18.1-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libdap' +version = '3.18.1' + +homepage = 'http://opendap.org/download/libdap' +description = """A C++ SDK which contains an implementation of DAP 2.0 + and the development versions of DAP3, up to 3.4. + This includes both Client- and Server-side support classes.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.opendap.org/pub/source/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('Bison', '3.0.4'), + ('flex', '2.6.4'), +] + +dependencies = [ + ('cURL', '7.53.1'), + ('libxml2', '2.9.4'), + ('LibUUID', '1.0.3'), +] + +sanity_check_paths = { + 'files': ['bin/getdap', 'bin/getdap4', 'bin/dap-config', 'lib/libdap.a', 'lib/libdap.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.68-foss-2015a.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.68-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d976cb1a3f323a6ed11a6edf99ea8217895607ff --- /dev/null +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.68-foss-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libdrm' +version = '2.4.68' + +homepage = 'http://dri.freedesktop.org' +description = """Direct Rendering Manager runtime library.""" + +source_urls = ['http://dri.freedesktop.org/libdrm/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2015a'} + +builddependencies = [ + ('libpthread-stubs', '0.3'), +] + +dependencies = [ + ('libpciaccess', '0.13.4'), +] + +sanity_check_paths = { + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], + 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-GCCcore-6.3.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..d6e3c7e9a1503f9bc7691cce3100e106cb7f4760 --- /dev/null +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.76-GCCcore-6.3.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'libdrm' +version = '2.4.76' + +homepage = 'http://dri.freedesktop.org' +description = """Direct Rendering Manager runtime library.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['http://dri.freedesktop.org/libdrm/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = [ + '6e3fb50d7500acf06f7eed44d5b1d33cda26aef7f5ae6667ddcc626b435c2531', # libdrm-2.4.76.tar.gz +] + +dependencies = [ + ('X11', '20170314'), +] +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), +] + +sanity_check_paths = { + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], + 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..336a7eca3dfba406ad87a819c79870889f978a69 --- /dev/null +++ b/easybuild/easyconfigs/l/libffcall/libffcall-1.13-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'libffcall' +version = '1.13' + +homepage = 'https://www.gnu.org/software/libffcall/' + +description = """ + GNU Libffcall is a collection of four libraries which can be used to build + foreign function call interfaces in embedded interpreters +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['1707ce707dbbf57f1bbe9aa56929c0da866046b0d5a26eb0d96d9f0bb29bbce7'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/avcall.h', 'include/callback.h', 'include/trampoline.h', + 'include/vacall.h', 'lib/libavcall.a', 'lib/libcallback.a', + 'lib/libtrampoline.a', 'lib/libvacall.a'], + 'dirs': [], +} + +parallel = 1 + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c9f216298da0ea3d20bb03ac4929904c029d1c94 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-5.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.2.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..35fa02052ad51f3d535debb53ad8969df60c9a42 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.2.1' + +homepage = 'http://sourceware.org/libffi/' + +description = """ + The libffi library provides a portable, high level programming interface to + various calling conventions. This allows a programmer to call any function + specified by a call interface description at run-time. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['d06ebb8e1d9a22d19e38d63fdb83954253f39bedc5d46232a05645685722ca37'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), + ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': ['lib', 'lib64'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..463baf18d20d0782fbad4c338519ee32e6a15241 --- /dev/null +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libgd' +version = '2.2.4' + +homepage = 'https://libgd.github.io/' + +description = "GD is an open source code library for the dynamic creation of images by programmers." + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/libgd/libgd/releases/download/gd-%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['487a650aa614217ed08ab1bd1aa5d282f9d379cfd95c756aed0b43406381be65'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('fontconfig', '2.12.1'), + ('libjpeg-turbo', '1.5.2'), + ('libpng', '1.6.30'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ["lib/libgd.a", "lib/libgd.%s" % SHLIB_EXT], + 'dirs': ["bin", "include"], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1f0033e09ad0e9937d5efb5379b49d729b4f0f6 --- /dev/null +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-foss-2016b.eb @@ -0,0 +1,30 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'ConfigureMake' + +name = 'libgd' +version = '2.2.4' + +homepage = 'https://libgd.github.io' +description = """GD is an open source code library for the dynamic creation of images by programmers.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/libgd/libgd/releases/download/gd-%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['0a3c307b5075edbe1883543dd1153c02'] + +dependencies = [ + ('fontconfig', '2.12.1'), + ('libjpeg-turbo', '1.5.0'), + ('libpng', '1.6.24'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['lib/libgd.a', 'lib/libgd.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.2.4-intel-2017a.eb b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1a8de80eb4eee0253b986434aeb0661335cb1478 --- /dev/null +++ b/easybuild/easyconfigs/l/libgd/libgd-2.2.4-intel-2017a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libgd' +version = '2.2.4' + +homepage = 'https://libgd.github.io/' +description = "GD is an open source code library for the dynamic creation of images by programmers." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/libgd/libgd/releases/download/gd-%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('fontconfig', '2.12.1', '-libpng-1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('libpng', '1.6.29'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ["lib/libgd.a", "lib/libgd.%s" % SHLIB_EXT], + 'dirs': ["bin", "include"], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index 2f55afa678e0406fc14c3f4398bd411be544820d..9a49b39337fba20947cac07490d9539c1b1f4c3e 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb index 1b5c00b84c6b29173fac7a4ad0a2180323eeabd9..e53635c2b07b2b2eb1adfb8557c16228aceceb9e 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index 7ff4a544d309a49e7440b3a1631d0dd78f6a2139..29770eb9ac61b57492a5889aadd3bb6f0fa78886 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb index a911adbdf645ddb7e3fcbd05f9c5040fb1e5c2be..b6e7c90fb8cd83cfa22232245306c5e799fe8557 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb index 733d12d5e4b8358f6d61d678f3796b761baaac3e..6f04e6d6a8c1999266df7971d38c72000e16d914 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb index c1b5b27e46314bb614b18bfed50044e1690acde6..21f520c0e6b063d3497a999d32db1eb6b27a0b53 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb index 0c761422aa9981fcbcd242a045a25e04b473e997..416434ef6e2bb2e4a7a905232121ce8a28682145 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb index ede4708977f066544ad9202a2c7e36bf152b6afd..34834f9883b07a13b781eec39f5c390645dd6684 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb index 29d1902d63ed19298098b829dcfd653b3d109efc..c6e50394036dfe3f5ea95bb49f832b2a189f65f9 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb index f150abd20cc8e5ebf00b17ffde62418c88de1f2b..6400af43d6c2045b3a978e68af1b31645aa11e63 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb index 2b4825fe33708c4980c4786d0849d6005ca06b86..041fd7f660b1fe1a6453f2b440010a792feeaeb0 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..144f1b968782c0b92ffef8e3c43cae4a3bcd34be --- /dev/null +++ b/easybuild/easyconfigs/l/libharu/libharu-2.3.0-intel-2017a.eb @@ -0,0 +1,39 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## +# Modified for foss-2016b by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'CMakeMake' + +name = 'libharu' +version = '2.3.0' + +homepage = 'http://libharu.org/' +description = """libHaru is a free, cross platform, open source library for generating PDF files.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [' https://github.com/libharu/libharu/archive/'] +sources = ['RELEASE_%s.tar.gz' % '_'.join(version.split('.'))] + +dependencies = [('libpng', '1.6.29')] + +builddependencies = [('CMake', '3.8.1')] + +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libhpdf.%s' % SHLIB_EXT], + 'dirs': ['if', 'include', 'lib'] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.32-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libidn/libidn-1.32-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8fe50e9968e34a07c3fac47877cbe43e7ac49cbd --- /dev/null +++ b/easybuild/easyconfigs/l/libidn/libidn-1.32-GCCcore-5.4.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'libidn' +version = '1.32' + +homepage = 'http://www.gnu.org/software/libidn' +description = """GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications. +Libidn's purpose is to encode and decode internationalized domain names.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ['bin/idn', 'lib/libidn.%s' % SHLIB_EXT], + 'dirs': ['include'], +} +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.0-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.0-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..42aa366fd18a3b57b545ee3a92c3ffe91dff85ba --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.0-GCCcore-5.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.0' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.08'), +] + +builddependencies = [('binutils', '2.26', '', True)] + +configopts = "--with-jpeg8" +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-foss-2016b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7544c29c9645ac4c61a51ce00000915c43f2508e --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.1-foss-2016b.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.1' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.12.02'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8d3ce16df6918127e4e4d25ac6beea0424c1e356 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.5.2-GCCcore-6.4.0.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.5.2' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' + +description = """ + libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to + accelerate baseline JPEG compression and decompression. libjpeg is a library + that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['9098943b270388727ae61de82adec73cf9f0dbb240b3bc8b172595ebf405b528'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('NASM', '2.13.01'), +] + +configopts = "--with-jpeg8" + +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', + 'bin/tjbench', 'bin/wrjpgcom', 'lib/libjpeg.a', + 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', + 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb index 9967c64c686f7cedc20b7416ba3ac74511c755d2..17116e1d46addc53a055af3056d47afc6d9b75aa 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb @@ -6,10 +6,11 @@ version = '0.13.1' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'GCC', 'version': '4.7.2'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'GCC', 'version': '4.7.2'} +checksums = ['8641a3ce37c97a6b28439d4630adb9583d8bd3e3a08c2040aa81f9932a7a76f6'] builddependencies = [ ('Autoconf', '2.69'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb index 9371a19f2d7a82b5e8aa3a8e3cdff1f1f7f8acec..05a5d755f293b38aafcdb51b5e351f4a9271ddfc 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb @@ -6,10 +6,11 @@ version = '0.13.1' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'goolf', 'version': '1.4.10'} +checksums = ['8641a3ce37c97a6b28439d4630adb9583d8bd3e3a08c2040aa81f9932a7a76f6'] builddependencies = [ ('Autoconf', '2.69'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb index cbc3f1b46cba4464fe20f8cef7e6bc3875173f03..7b5d65355f733551a9c0884cb38b851d8d9eff0a 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb @@ -6,10 +6,11 @@ version = '0.13.1' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'ictce', 'version': '5.3.0'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'ictce', 'version': '5.3.0'} +checksums = ['8641a3ce37c97a6b28439d4630adb9583d8bd3e3a08c2040aa81f9932a7a76f6'] builddependencies = [ ('Autoconf', '2.69'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb index 1abedab086c2e975ce04fea6435854cd36e759b3..a19198650cdee0991a22ab984e758df82d99aa8d 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb @@ -6,10 +6,11 @@ version = '0.13.1' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'ictce', 'version': '5.5.0'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'ictce', 'version': '5.5.0'} +checksums = ['8641a3ce37c97a6b28439d4630adb9583d8bd3e3a08c2040aa81f9932a7a76f6'] builddependencies = [ ('Autoconf', '2.69'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-intel-2015a.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-intel-2015a.eb index 8970daab0af13cec659e26d52dd5140c3ac0c703..9afa895bc3124db5495868ec27dab1f2ca927672 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-intel-2015a.eb @@ -6,10 +6,11 @@ version = '0.13.1' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'intel', 'version': '2015a'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2015a'} +checksums = ['8641a3ce37c97a6b28439d4630adb9583d8bd3e3a08c2040aa81f9932a7a76f6'] builddependencies = [ ('Autotools', '20150119', '', ('GCC', '4.9.2')), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb index a36467cdf586c1ef20b019ee4a94d6f0b6c4529e..16172032508a5d1d83355d9de4b616638fcb59b3 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb @@ -6,10 +6,11 @@ version = '0.13.3' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'intel', 'version': '2015a'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2015a'} +checksums = ['9e0244e815dc55cbedb135baa4dc1e4b0325875276e081edfe38ff2bf61dfe02'] builddependencies = [ ('Autoconf', '2.69'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2015a.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0b628859737542d2c39a0bca8fdaf054a478f20 --- /dev/null +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libpciaccess' +version = '0.13.4' + +homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' +description = """Generic PCI access library.""" + +source_urls = ['https://www.x.org/releases/individual/lib/'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2015a'} + +builddependencies = [ + ('Autotools', '20150215'), + ('X11', '20160819'), +] + +sanity_check_paths = { + 'files': ['include/pciaccess.h', 'lib/libpciaccess.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016a.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016a.eb index 0baaea5ccf0fa2e59a9571a2fe95ecccb41f546f..d017a972c23d73a452657d61d32bf6c3ed2200b5 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016a.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016a.eb @@ -6,10 +6,11 @@ version = '0.13.4' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'foss', 'version': '2016a'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'foss', 'version': '2016a'} +checksums = ['74d92bda448e6fdb64fee4e0091255f48d625d07146a121653022ed3a0ca1f2f'] builddependencies = [ ('Autotools', '20150215'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016b.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016b.eb old mode 100755 new mode 100644 index 76bd735f5ab10a4250ad38d0104d255528542d38..c55a493a716dcd70b21a32aedbd7ff4ef6c6f95a --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016b.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-foss-2016b.eb @@ -6,10 +6,11 @@ version = '0.13.4' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'foss', 'version': '2016b'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'foss', 'version': '2016b'} +checksums = ['74d92bda448e6fdb64fee4e0091255f48d625d07146a121653022ed3a0ca1f2f'] builddependencies = [ ('Autotools', '20150215'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-gimkl-2.11.5.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-gimkl-2.11.5.eb index 449c59f9bf26a83ced4af0d58f476e0708656aa5..08c466e4d7dd6a7d5014391a0d6062d8d356abcd 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-gimkl-2.11.5.eb @@ -6,10 +6,11 @@ version = '0.13.4' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'gimkl', 'version': '2.11.5'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'gimkl', 'version': '2.11.5'} +checksums = ['74d92bda448e6fdb64fee4e0091255f48d625d07146a121653022ed3a0ca1f2f'] builddependencies = [ ('Autotools', '20150215'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2015b.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2015b.eb index fd0fe49af505554a66113aebe8500647ae60925a..64406b503983fd74c23dd6f8febf801bef88affb 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2015b.eb @@ -6,10 +6,11 @@ version = '0.13.4' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'intel', 'version': '2015b'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2015b'} +checksums = ['74d92bda448e6fdb64fee4e0091255f48d625d07146a121653022ed3a0ca1f2f'] builddependencies = [ ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016a.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016a.eb index 69a705ef82ee590f54ceeac11c9253bb591d9cf1..1ce0816af942f12271c300ceb0d443435b04cc6b 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016a.eb @@ -6,10 +6,11 @@ version = '0.13.4' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'intel', 'version': '2016a'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2016a'} +checksums = ['74d92bda448e6fdb64fee4e0091255f48d625d07146a121653022ed3a0ca1f2f'] builddependencies = [ ('Autotools', '20150215'), diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016b.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016b.eb old mode 100755 new mode 100644 index de4d55b18899ffd1db77b9d2504d6e3539816201..b1b38aee064d0e6dd6adf6bd7e3af0bcf3ea2c91 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.4-intel-2016b.eb @@ -6,10 +6,11 @@ version = '0.13.4' homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' description = """Generic PCI access library.""" +toolchain = {'name': 'intel', 'version': '2016b'} + source_urls = ['https://www.x.org/releases/individual/lib/'] sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2016b'} +checksums = ['74d92bda448e6fdb64fee4e0091255f48d625d07146a121653022ed3a0ca1f2f'] builddependencies = [ ('Autotools', '20150215'), diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.24-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.24-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c2aea84a3cd747dc2f4925a2de0a54d6337f9385 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.24-GCCcore-5.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.24' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +builddependencies = [('binutils', '2.26', '', True)] + +configopts = "--with-pic" + +majminver = ''.join(version.split('.')[:2]) +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', 'lib/libpng.a', + 'lib/libpng.%s' % SHLIB_EXT, 'lib/libpng%s.a' % majminver, 'lib/libpng%s.%s' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.28-gimkl-2017a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.28-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..64f18118ddc5568e55be74ca860da2e29eb6b5b2 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.28-gimkl-2017a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = "1.6.28" + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'version': '2017a', 'name': 'gimkl'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.11')] + +configopts = "--with-pic" + +majminver = ''.join(version.split('.')[:2]) +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', 'lib/libpng.a', + 'lib/libpng.%s' % SHLIB_EXT, 'lib/libpng%s.a' % majminver, 'lib/libpng%s.%s' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..6dc219faecfc48c22261c8a0f81f12f5bb55c8ad --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.30-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.30' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' + +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +majminver = ''.join(version.split('.')[:2]) + +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', + 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/libpng%s.a' % majminver, + 'lib/libpng%s.%s' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2015a.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ab9b29a42e634759cd27290bba393cdd8ac3a0f4 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2015a'} + +sanity_check_paths = { + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2016b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2016b.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2016b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2016b.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..60da643bb8cf3714019ebe5758b552646c56a3ea --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.4-GCCcore-6.4.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.4' + +homepage = 'http://xcb.freedesktop.org/' + +description = """ + The X protocol C-language Binding (XCB) is a replacement for Xlib featuring + a small footprint, latency hiding, direct access to the protocol, improved + threading support, and extensibility. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['50d5686b79019ccea08bcbd7b02fe5a40634abcfd4146b6e75c6420cc170e9d9'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-foss-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..684bf7dc76a9c5306b2137a3e86077e8ff8e7055 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-foss-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.2' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..a356775b1b55f3dbb85c8ffbaa5d8df407cbb727 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCCcore-5.4.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +patches = ['libreadline-%(version)s-bugfix.patch'] + +builddependencies = [('binutils', '2.26', '', True)] + +dependencies = [('ncurses', '6.0')] + +# for the termcap symbols, use EB ncurses +preconfigopts = "env LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2017a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..375e6cccf21082581dba47ad4f30b7b0d685eaa1 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +patches = ['libreadline-%(version)s-bugfix.patch'] + +dependencies = [('ncurses', '6.0')] + +# for the termcap symbols, use EB ncurses +preconfigopts = "env LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b26a32205d124ffa8e000e32a6df2a23cc595fa3 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-7.0-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '7.0' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' + +description = """ + The GNU Readline library provides a set of functions for use by applications + that allow users to edit command lines as they are typed in. Both Emacs and + vi editing modes are available. The Readline library includes additional + functions to maintain a list of previously-entered command lines, to recall + and perhaps reedit those lines, and perform csh-like history expansion on + previous commands. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://ftp.gnu.org/gnu/readline'] +sources = ['readline-%(version)s.tar.gz'] +checksums = ['750d437185286f40a369e1e4f4764eda932b9459b5ec9a731628393dd3d32334'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +# for the termcap symbols, use EB ncurses +preconfigopts = "env LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x + for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', + 'rlconf.h', 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..d65a11de5b3f4b16168a291ebeb06d77de89865b --- /dev/null +++ b/easybuild/easyconfigs/l/libsigsegv/libsigsegv-2.11-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'libsigsegv' +version = '2.11' + +homepage = 'https://www.gnu.org/software/libsigsegv/' + +description = "GNU libsigsegv is a library for handling page faults in user mode." + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['dd7c2eb2ef6c47189406d562c1dc0f96f2fc808036834d596075d58377e37a18'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/sigsegv.h', 'lib/libsigsegv.a', 'lib/libsigsegv.la'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsndfile/libsndfile-1.0.28-intel-2017a.eb b/easybuild/easyconfigs/l/libsndfile/libsndfile-1.0.28-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0912c1995f5dea2ddbc1bc4e1a902e5bf8e9d1b7 --- /dev/null +++ b/easybuild/easyconfigs/l/libsndfile/libsndfile-1.0.28-intel-2017a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libsndfile' +version = '1.0.28' + +homepage = 'http://www.mega-nerd.com/libsndfile' +description = """Libsndfile is a C library for reading and writing files containing sampled sound + (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.mega-nerd.com/libsndfile/files/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/sndfile.h', 'include/sndfile.hh', 'lib/libsndfile.a', 'lib/libsndfile.%s' % SHLIB_EXT], + 'dirs': ['bin'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..927f15bb68b09cdb1a0b78a3a788a8e4993b451b --- /dev/null +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.12-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libsodium' +version = '1.0.12' + +homepage = 'http://doc.libsodium.org/' + +description = """ + Sodium is a modern, easy-to-use software library for encryption, decryption, + signatures, password hashing and more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://download.libsodium.org/libsodium/releases/'] +sources = [SOURCE_TAR_GZ] +checksums = ['b8648f1bb3a54b0251cf4ffa4f0d76ded13977d4fa7517d988f4c902dd8e2f95'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['include/sodium.h', 'lib/libsodium.so', 'lib/libsodium.a'], + 'dirs': ['include/sodium', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..127c1cea1b18302392f14d60ed7e2573df01723f --- /dev/null +++ b/easybuild/easyconfigs/l/libspatialindex/libspatialindex-1.8.5-GCCcore-6.4.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libspatialindex' +version = '1.8.5' + +homepage = 'http://libspatialindex.github.io' + +description = """ + C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://download.osgeo.org/libspatialindex/'] +sources = ['spatialindex-src-%(version)s.tar.gz'] +checksums = ['7caa46a2cb9b40960f7bc82c3de60fa14f8f3e000b02561b36cbf2cfe6a9bfef'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['lib/libspatialindex.a', 'lib/libspatialindex.%s' % SHLIB_EXT], + 'dirs': ['include/spatialindex'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtasn1/libtasn1-4.12-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libtasn1/libtasn1-4.12-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e8763aba9c42d5174c1855aa8c062db2028b4080 --- /dev/null +++ b/easybuild/easyconfigs/l/libtasn1/libtasn1-4.12-GCCcore-5.4.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libtasn1' +version = '4.12' + +homepage = 'https://www.gnu.org/software/libtasn1/' +description = """Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. + It was written by Fabio Fiorina, and has been shipped as part of GnuTLS + for some time but is now a proper GNU package.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ['bin/asn1%s' % x for x in ['Coding', 'Decoding', 'Parser']] + + ['lib/libtasn1.%s' % x for x in ['a', SHLIB_EXT]], + 'dirs': ['include'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..93cdcb700f0b889e9919e18869d4fc478388f4c3 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCCcore-6.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' + +description = """ + GNU libtool is a generic library support script. Libtool hides the complexity + of using shared libraries behind a consistent, portable interface. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e3bd4d5d3d025a36c21dd6af7ea818a2afcd4dfc1ea5a17b39d7854bcd0c06e3'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('M4', '1.4.18'), +] + +sanity_check_paths = { + 'files': ['bin/libtool', 'bin/libtoolize', 'lib/libltdl.%s' % SHLIB_EXT], + 'dirs': ['include/libltdl', 'share/libtool/loaders', 'share/man/man1'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 4ae4db7879fd0fc599fd6ee1ba40a9075e2dc049..b8af039cc74b85d01a2c8b688fd887b70937d16d 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index 51b4352aa597c4a658fbb0f2a0040b3beba97599..e851a2e134c986942b2243460c678b1df3eb7f45 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.6-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.6-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1f1541e7ad2e0d95f7caff932541ef776a83346 --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.6-GCCcore-5.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.6' + +homepage = 'http://www.gnu.org/software/libunistring/' +description = """This library provides functions for manipulating Unicode strings and for manipulating C strings + according to the Unicode standard.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('binutils', '2.26', '', True)] + +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8d845c9877224ea410e40b2d679ebc0ea57a08bd --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.7-GCCcore-6.4.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.7' + +homepage = 'http://www.gnu.org/software/libunistring/' + +description = """ + This library provides functions for manipulating Unicode strings and for + manipulating C strings according to the Unicode standard. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] +checksums = ['2e3764512aaf2ce598af5a38818c0ea23dedf1ff5460070d1b6cee5c3336e797'] + +builddependencies = [ + ('binutils', '2.28'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..c3570aaed39a19f334ff746945d113c0fce5ddbe --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-GCC-5.4.0-2.26.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '3.0.0' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} +# Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +toolchainopts = {'lowopt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +# runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..5dad1c142c918dab19bd03a87d0375d7683b8b69 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-3.0.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '3.0.0' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} +# Results for some functionals (e.g. mgga_c_tpss) deviate with too aggressive optimization settings. +toolchainopts = {'lowopt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +# runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc%s.%s' % (x, y) for x in ['', 'f90'] for y in ['a', SHLIB_EXT]], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-5.4.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5c02f30d489046aef4329ba9cad3d025b84c732d --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-GCCcore-5.4.0.eb @@ -0,0 +1,26 @@ +name = 'libxml2' +version = '2.9.4' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('XZ', '5.2.2'), +] + +# use same binutils version that was used when building GCCcore toolchain +builddependencies = [('binutils', '2.26', '', True)] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-gimkl-2017a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..eaca2fc38e5fb63574e1c09a4b4762364f859a5b --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.4-gimkl-2017a.eb @@ -0,0 +1,23 @@ +name = 'libxml2' +version = '2.9.4' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.11'), + ('XZ', '5.2.3'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.29-intel-2017a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.29-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..03b3d4547eb2322df8a770a33035c842c097f7e5 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.29-intel-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.29' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.11'), + ('libxml2', '2.9.4'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index 1383948289860f990c8d718b919a456046811f70..b13bc6b78fa0a132892b447985f3c0f7e5422d8b 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index ff0da7e03391fd45232dab02b009f3f4d9084022..f14a7e7513fb95833eb9e272460e5581863b389b 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..156fcf6ef56e226af49d63c9c4d56b4b07f4cb1c --- /dev/null +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-GCCcore-6.4.0.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'ConfigureMake' + +name = 'libyaml' +version = '0.1.6' + +homepage = 'http://pyyaml.org/wiki/LibYAML' + +description = """LibYAML is a YAML parser and emitter written in C.""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://pyyaml.org/download/libyaml/'] +sources = ['yaml-%(version)s.tar.gz'] +checksums = ['7da6971b4bd08a986dd2a61353bc422362bd0edcc67d7ebaac68c95f74182749'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], + 'dirs': ["lib/pkgconfig"] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb index 2a9749a5815e3e371fccc9dfe90454cd19df439d..17d86127bf23439ff9d3d07bd4dabd6cb293228d 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb index cf285fb5ecb2cd32323366a8c9fc0148f0399b26..0af648ec221ec312a31bb0ba5c1f709c961c3e5e 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb index c715793903da7dea239ad4d648a07f8184e2351b..bb08d2990a3c9f5a25b1cf356696024c3b6b367f 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb index e7ae73819e10f919c4caf95037ce7959735c73cb..83ca6c3ec6608ff8c77a80038a35fb290409fa58 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb index 44f94ecc3d0fc918b616ca112d57532b4103296d..c04077ae4e057cbb924f8d7b70c7013fb8d59853 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.7.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d91bac04d7be354e6cfe83988dbef431c640b95 --- /dev/null +++ b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-foss-2017a.eb @@ -0,0 +1,51 @@ +## +# -*- mode: python; -*- +# EasyBuild reciPY for LikWid -- see https://github.com/RRZE-HPC/likwid +# as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2017 UL HPC -- hpc.uni.lu +# Authors:: UL HPC Team +# License:: MIT/GPL +# +# +easyblock = 'ConfigureMake' + +name = 'likwid' +version = '4.2.0' + +homepage = 'https://github.com/RRZE-HPC/likwid' +description = """Likwid stands for 'Like I knew what I am doing'. Likwid is a +simple to install and use toolsuite of command line applications for performance +oriented programmers. It works for Intel and AMD processors on the Linux +operating system. +""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/RRZE-HPC/likwid/archive/'] +sources = ['%(version)s.tar.gz'] + +patches = ['likwid-%(version)s-config-mk.patch'] + +skipsteps = ['configure'] +buildopts = 'CC="$CC" CFLAGS="$CFLAGS -std=c99" PREFIX=%(installdir)s' +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", + "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.%s" % SHLIB_EXT], + 'dirs': ["man/man1"] +} + +postinstallcmds = [ + 'echo "================================================================================"', + 'echo "IMPORTANT: you will have to manually apply the following changes **as root**:"', + 'echo " sudo chown root:root \$EBROOTLIKWID/sbin/likwid-accessD"', + 'echo " sudo chmod u+s \$EBROOTLIKWID/sbin/likwid-accessD"' +] + +maxparallel = 1 + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5558b79e5fa32b7539027a1ee534af907844eef5 --- /dev/null +++ b/easybuild/easyconfigs/l/likwid/likwid-4.2.0-intel-2017a.eb @@ -0,0 +1,50 @@ +## +# -*- mode: python; -*- +# EasyBuild reciPY for LikWid -- see https://github.com/RRZE-HPC/likwid +# as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2017 UL HPC -- hpc.uni.lu +# Authors:: UL HPC Team +# License:: MIT/GPL +# +# +easyblock = 'ConfigureMake' + +name = 'likwid' +version = '4.2.0' + +homepage = 'https://github.com/RRZE-HPC/likwid' +description = """Likwid stands for 'Like I knew what I am doing'. Likwid is a +simple to install and use toolsuite of command line applications for performance +oriented programmers. It works for Intel and AMD processors on the Linux +operating system.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/RRZE-HPC/likwid/archive/'] +sources = ['%(version)s.tar.gz'] + +patches = ['likwid-%(version)s-config-mk.patch'] + +skipsteps = ['configure'] +buildopts = 'COMPILER="ICC" CC="$CC" CFLAGS="$CFLAGS -std=c99" PREFIX=%(installdir)s' +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", + "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.%s" % SHLIB_EXT], + 'dirs': ["man/man1"] +} + +postinstallcmds = [ + 'echo "================================================================================"', + 'echo "IMPORTANT: you will have to manually apply the following changes **as root**:"', + 'echo " sudo chown root:root \$EBROOTLIKWID/sbin/likwid-accessD"', + 'echo " sudo chmod u+s \$EBROOTLIKWID/sbin/likwid-accessD"' +] + +maxparallel = 1 + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/lpsolve/lpsolve-5.5.2.5-intel-2017a.eb b/easybuild/easyconfigs/l/lpsolve/lpsolve-5.5.2.5-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ca32aeeb9f7c2a0f0d0c0ba1b40df0cc3295ab4 --- /dev/null +++ b/easybuild/easyconfigs/l/lpsolve/lpsolve-5.5.2.5-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'CmdCp' + +name = 'lpsolve' +version = '5.5.2.5' + +homepage = 'https://sourceforge.net/projects/lpsolve/' +description = "Mixed Integer Linear Programming (MILP) solver" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['lp_solve_%(version)s_source.tar.gz'] + +lpsolve_ver = '%(version_major)s%(version_minor)s' +start_dir = 'lpsolve%s' % lpsolve_ver + +comp_cmd = 'sed -i "s/^c=.*/c=\'$CC\'/g" ccc && sed -i "s/^opts=.*/opts=\'$CFLAGS\'/g" ccc && ' +comp_cmd += "sh ccc" +cmds_map = [('.*', comp_cmd)] + +lpsolve_libname = 'liblpsolve%s' % lpsolve_ver +files_to_copy = [ + (['bin/ux64/%s.a' % lpsolve_libname, 'bin/ux64/%s.%s' % (lpsolve_libname, SHLIB_EXT)], 'lib'), + (['../lp*.h'], 'include'), +] + +sanity_check_paths = { + 'files': ['lib/%s.a' % lpsolve_libname, 'lib/%s.%s' % (lpsolve_libname, SHLIB_EXT)], + 'dirs': ['include'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.9-foss-2016b-develop.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.9-foss-2016b-develop.eb new file mode 100644 index 0000000000000000000000000000000000000000..132cfc359d66529cf9317ba6a1b1eadeda9b3843 --- /dev/null +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.9-foss-2016b-develop.eb @@ -0,0 +1,34 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: GNU GPLv2 +# +# Notes:: +## + +easyblock = 'ConfigureMake' + +name = 'lynx' +version = '2.8.9' +versionsuffix = '-develop' + +description = "lynx is an alphanumeric display oriented World-Wide Web Client" +homepage = 'http://lynx.browser.org/' + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://invisible-mirror.net/archives/lynx/tarballs'] +sources = ['%(name)s%(version)sdev.11.tar.bz2'] + +dependencies = [ + ('ncurses', '6.0'), +] +sanity_check_paths = { + 'files': ['bin/lynx'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb index a7f7a66b5b74080db4c84917fa73be3e9131263b..9b71429dfdb8a55c187015e2c0284e7070aed781 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb @@ -11,7 +11,7 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce toolchain = {'name': 'ictce', 'version': '5.5.0'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftpmirror.gnu.org/m4'] +source_urls = [GNU_SOURCE] patches = ['M4-%(version)s-no-gets.patch'] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb index 54365e5c1206734c1a95a0464750c447ee525c7f..4811e3333af019e3764efcc38de255664b3c7f95 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb index 41431f6ed6c5484a3c5bdee505d356dce83c7f57..08c0165d8017a2c20f0e44b6d46550bdb5936535 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb index 91d64e5bd3ca463f8b344a57f8c80f6eebe37200..dfbd2123ff4dfc8f4e8919e9f9e6440eafcc07a4 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb index cb0daa392fed324ffc6f1ae14f6baf34f4705b1b..0c6c8895af5d3bae2df8d2374ffa06328a133919 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb index e59131c48fb164f143c5ad1fc8e82fdd9b62cc88..4f5b6c32ba2dd6d534cba3a362bf6b927367ce71 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb index c9b8ae162c44b08a1ac4929fea3e223101785aa4..09ed58a2b992f2ecf8d54a61f3fde11d3b8252ef 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2-binutils-2.25.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb index d52dd469f6af1dba71334ed29fc57a750fe82e60..91e9fc50262cd362085f1b937b5176388bdd5586 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb index 5658dda837723f361f5fcdb38eb782bcaf1fdecf..18abbd3731c38a5d3b5a06ceb4740e214153c879 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb index 006446b9f08e0bdb07bd4b5e70999a9c17ac94eb..675ca2e5f8f03cc2fd6db840b78d35532c9d9db1 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-binutils-2.25.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb index e7a4d305fe1162d1b886824372d4ec88b8544f68..49ea4854d5e8970fea2eb09fc6a54624d6bff227 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb index 6e2de92ed5905e500ecaf1fd8622971719e3f5cb..b86be0771d8efffe1b6cd9387e07f0c458ccc294 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.1.0-binutils-2.25.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb index ab6365038384b116ad80f0d641dd1fda0c4ab45d..cf9325ba99112d4a1889540f481c2ec90a03eeae 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-5.4.0-2.26.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb index 4a7f47d9bcb40821121d9aa9cc78f32d3b32f4e9..7c607c059e86484968b5b1038c2119a49f940eb2 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.2.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb index 72fbf1541bfd0865ca471fbb3a5243c0e67b9880..25039d6e396a577167383d2e4de1f6d9439a6695 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.3.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb index 83effb6682bc6daab9c4a5d934fc9d58748617a2..697ed5923120ee5404f59224cefc507772b18290 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-4.9.4.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.25', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb index d508b59ac77db2845ffda78be95c36b0d4987aaa..9fd2f629f97d9502180e771f6d5906265d559728 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.3.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.26', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb index 702e8595184d52126dd9f26b583214f6a082cd6e..3ea2d5a8a5afa25f7af5d20f260dcffe0f6a783a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-5.4.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.26', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb index 87ca206fb45ee4783f0df54e6767cd8e2a59c466..dfbcc454666ab755c1e6933e8aae53fa5d2dfca4 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.1.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.27', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb index 9a89ad1fbdf638acdb27a35a66649bcbde50dd13..a888ba53c1240dfd76b48d3a67a49fcb92404967 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCCcore-6.2.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.27', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb index 9fd3840472384e917e5a856d3bcb14a2228af3f2..e74ca76bb2bea6ac1dc2c74822ad1ad197f0eec3 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb index 222b4603e6d91f68ca6fe1816315cbfaf2d3fa73..89d12d3ecc2e4e147f9a477f810c26b282bb08df 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.3-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb index 8d48b943902dd45395d8248a55fd1b0648d6124d..b8a22e8dd194f3a15ee44d7ec2a490a440099a07 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-5.1.0-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb index 4190871d6ee78291c358e267c371804cccaeded0..9f81198d348415f57167fc141dc75b8979cc59f3 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb index a244ff7f0d32c754f9dd457361171520c6b50b32..abf727c78deb3bc1ccfa8a1fe9f775ade31ed165 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015.05.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb index 6b8e25d1d42559d7b505da0956fd7bd0cf2092e4..8a2f6a69b7d43539ccfe0151856a99c53a33733c 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb index 414bbac849b88499423c5944b17aa363068d9fdb..c94c57b0c911055acc529cfd437dbe11dd32d855 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb index e93393c961bc77670f00ae7b3bd160ffdc1cba6b..ac1d3f233643f4f97cdb3cb6487c5ee12ca180b5 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016.04.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb index 32fe2f7b787c2f1e5256edbf79b01bf1f9490117..d6580cb3e912f9ef998897c63f593b0d4a79e632 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS='-fgnu89-inline'" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb index 3d6737ba0844df35224d64b4791b3038305d375c..7121f7d1727c335e7deb7b501a6656b33cae72a4 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb index 04ba474daf3d405ee78469377703cf87323f7f83..75de298f7a2256f6ea512673be8ebb5ac3120584 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-gimkl-2.11.5.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb index ca3c0c7b6c868e7f1e51413e8dd50e531f994e65..0157f04741ee78a501612f2b08239d54c8d2ddf8 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.4.0.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb index e8ed91309a368f8bb795180ae758bbb8a41f90a8..740881ec34dcb8f2020c9b59346ef58394f923ba 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb index a896f05992d9ffd1cf83b9424750bfc8fec0a514..e141025d053bf252f4a42e8c8bee8aa227b84f71 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb index bd224278e8028e427833c158dd02ea97a777a24a..39930debabedaf8d4f9988e6142966c46fd2a571 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb index 942e49510c5e71e41f31807db5125456cc644d64..0f8a70041c7af83e8096e5f4540fe4c151f20115 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb index dbdac66931a995d724bf928810361b7b9bdcc49b..0f22f64f828faa6629df92cc33054f7965c2531a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb index 683e8274c8ce7cfef125f22feed38dbcec3534cc..aba40b2a53d26e0310d51f054fa8ee9f4a095a60 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016.02-GCC-4.9.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb index 2b9dd5a6b802aaa1193273ccb36735ac4431362c..308aa5a579e8b29559b606277139e82ff07284cb 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb index d339ed79b83a37832f155aa63944b49b636e753e..4da8a15bace7536825240d5d4c77a5318f7bb8ba 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016b.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17.eb index 159d8d0173e40d21c1db63119ba323d2da90113d..0ac466ffad840e19b776436d0398a845710d15ff 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17.eb @@ -4,23 +4,26 @@ name = 'M4' version = '1.4.17' homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. - It is mostly SVR4 compatible although it has some extensions - (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. + +description = """ + GNU M4 is an implementation of the traditional Unix macro processor. It is + mostly SVR4 compatible although it has some extensions (for example, handling + more than 9 positional parameters to macros). GNU M4 also has built-in + functions for including files, running shell commands, doing arithmetic, etc. """ toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3ce725133ee552b8b4baca7837fb772940b25e81b2a9dc92537aeaf733538c9e'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'files': ["bin/m4"], + 'files': ['bin/m4'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb index c1c1439bf3cf0cf7590093428dc22da70b45314e..34356fc1a7559274663e92278ca777aca021413f 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-5.4.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.26', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb index ffbaa7a77a230679ef26403bdb6a9ae57d94633b..ae199e4d28ce29b49d2a662223e0ca8a9fa89420 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.3.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.27', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..a71de342f17d9bbf8f36db66b38528bd41e261cd --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' + +description = """ + GNU M4 is an implementation of the traditional Unix macro processor. It is + mostly SVR4 compatible although it has some extensions (for example, handling + more than 9 positional parameters to macros). GNU M4 also has built-in + functions for including files, running shell commands, doing arithmetic, etc. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [ + ('binutils', '2.28', '', True), +] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ['bin/m4'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb index 18394615f92cd33ca3aae0475956c409fde5a6ec..0c20559e8b9b83b309360754fea39dab6a89a759 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.1.0.eb @@ -17,7 +17,7 @@ source_urls = [GNU_SOURCE] builddependencies = [('binutils', '2.28', '', True)] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..4605723e361b4a8a4573658c1c3ec2e393d27bc4 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18-GCCcore-7.2.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.18' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.29', '', True)] + +# '-fgnu89-inline' is required to avoid linking errors with older glibc's, +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 +configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" + +sanity_check_paths = { + 'files': ['bin/m4'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb index f186b0ad857e83e1c7cc8157e211c6102c4ffebd..ac19a0bf0a0d0abfd9f72be9ac836b45d2961e36 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.18.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.18.eb @@ -4,23 +4,26 @@ name = 'M4' version = '1.4.18' homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. - It is mostly SVR4 compatible although it has some extensions - (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. + +description = """ + GNU M4 is an implementation of the traditional Unix macro processor. It is + mostly SVR4 compatible although it has some extensions (for example, handling + more than 9 positional parameters to macros). GNU M4 also has built-in + functions for including files, running shell commands, doing arithmetic, etc. """ toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/529 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-cxx CPPFLAGS=-fgnu89-inline" sanity_check_paths = { - 'files': ["bin/m4"], + 'files': ['bin/m4'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb b/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb index b2fe855c565215f0e3c172f776504c98c1456224..708d54f14621a7f089445b88b3b5a92ae6d17d3b 100644 --- a/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb +++ b/easybuild/easyconfigs/m/MACH/MACH-1.0.18.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb index fe54887474e69d6cc812349117bcc55422812757..a1e0594673d284fe32931110374b1f93787cd854 100644 --- a/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/m/MACS/MACS-1.4.2-1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb index 74d5a36f68061da53233e8a7c768bb9742dfa6f0..d1dc14f1ecdfaccdaa8259f3b2ec47481e0d976e 100644 --- a/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2015 Virginia Bioinformatics Institute at Virginia Tech # Authors:: Dominik L. Borkowski diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb index 66ff95669d4e5ecc43601beade4f76801e92974e..301e024b2e0e4a3131b6f00e75dc3ff05fbf2d1b 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb index 6bf747d6075ccf1f0e91d1e9c6bf7ef74ff58b04..de247f7e05dfcf98b1d1bd253f317cc90bbc392a 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb index 725469edc9f58df3cb6e537527e0426df5253aae..420ca7286280dac31b88ca309546187eeaa71be7 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.305-foss-2016b-with-extensions.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb index 013f802b61d35c06296af9ef9d9623eef1e24c9d..fb42e73bb65f7cd101774ce47da9ac29eade27f9 100644 --- a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb index 05e18b2e8bdc729ddcadc862c4ee4d7b108b81cd..92679ceb39bb9bd56c785c8e3c4cb6abaa45d6ab 100644 --- a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb +++ b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb index b0b8036c47660933fa83884b8e72ebff20c604e8..2d79a877dec6f79f7eba09d0af855ce6a637d9cf 100644 --- a/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb @@ -12,9 +12,4 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('Java', '1.7.0_10')] -import os -license_server = os.getenv('EB_MATLAB_LICENSE_SERVER', 'license.example.com') -license_server_port = os.getenv('EB_MATLAB_LICENSE_SERVER_PORT', '00000') -key = os.getenv('EB_MATLAB_KEY', '00000-00000-00000-00000-00000-00000-00000-00000-00000-00000') - moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb index 65e39e18726fcae599612fd9e26f0cf39a311481..068032d3106cfa114f4a677f9f31be75ca6e3a45 100644 --- a/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb @@ -12,9 +12,4 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('Java', '1.8.0_45')] -import os -license_server = os.getenv('EB_MATLAB_LICENSE_SERVER', 'license.example.com') -license_server_port = os.getenv('EB_MATLAB_LICENSE_SERVER_PORT', '00000') -key = os.getenv('EB_MATLAB_KEY', '00000-00000-00000-00000-00000-00000-00000-00000-00000-00000') - moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2016a.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2016a.eb index e0113113d06007fb73f4fb596a38927cc8f1fc3b..02024eedffad749d6e9adbde760fa4d2687f67a6 100644 --- a/easybuild/easyconfigs/m/MATLAB/MATLAB-2016a.eb +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2016a.eb @@ -12,9 +12,4 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('Java', '1.8.0_92')] -import os -license_server = os.getenv('EB_MATLAB_LICENSE_SERVER', 'license.example.com') -license_server_port = os.getenv('EB_MATLAB_LICENSE_SERVER_PORT', '00000') -key = os.getenv('EB_MATLAB_KEY', '00000-00000-00000-00000-00000-00000-00000-00000-00000-00000') - moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2017a.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5aa71b404fc1a7142313f2b52299f32bc7a84023 --- /dev/null +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2017a.eb @@ -0,0 +1,17 @@ +name = 'MATLAB' +version = '2017a' + +homepage = 'http://www.mathworks.com/products/matlab' +description = """MATLAB is a high-level language and interactive environment + that enables you to perform computationally intensive tasks faster than with + traditional programming languages such as C, C++, and Fortran.""" + +toolchain = {'name': 'dummy', 'version': ''} + +# be sure to copy both DVD content to the SAME directory, +# including the hidden files, especially .dvd1 and .dvd2 +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Java', '1.8.0_121')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index b1a95f40315c0e5fe1ad6bc379d7ac39f988d91f..79f149914d3a89a676295a9a0f093f52425e5d39 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index 0619f29465bb1fd6c9f1f2677cc6aee95ff6b8c9..8922cbe4f1e3b65d1751591931da53aaa1b52dea 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb b/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb index a3ab3c425714ee1778c6d3233548f51c4e9d413a..82d928f9029e86559c418278f6ff1b8ae9777ad0 100644 --- a/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb +++ b/easybuild/easyconfigs/m/MEGACC/MEGACC-7.0.18-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016, UNIGE # Authors:: Yann Sagon diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index 2b1ca4f4f3f20c78e3264ebb11f3d97949008b5b..a51d0ef4508e2be2366741b2c6cbd526ef706ccb 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 8c5d271d61589250e8f5defa196bdb4c4139cef7..71e10b9d12afd807fa3aba61ed1be7dc97134a7b 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2017a.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2017a.eb index b1648c008ca038f10da2ea0009d7911eef5796de..e2b238572cac34ef67919b9cb3e244baa3d59b78 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2017a.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2017a.eb @@ -15,7 +15,7 @@ source_urls = [ 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', ] -#We use 32bit for indices and 64bit for content +# we use 32bit for indices and 64bit for content patches = ['METIS-5.1.0-use-doubles.patch'] builddependencies = [('CMake', '3.8.0')] @@ -23,4 +23,3 @@ builddependencies = [('CMake', '3.8.0')] configopts = ['', 'shared=1'] moduleclass = 'math' - diff --git a/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb index 6c78bbddafbee7052f01c57e9a95343e47c6aaea..11cadedbcfbdce02146754119ed9a61f90d65297 100644 --- a/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MM-align/MM-align-20130815-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb index 9077537b1d06cf800724f603dea02c31f42bd2ae..c3c02301be7d1c38fc0940a69582cea3c1476faa 100644 --- a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb +++ b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb index a98288f90013bd344111c317b0c8974b16f95acd..8006954711e5efda7f856c172ee6e948fcc60b17 100644 --- a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb +++ b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-goolf-1.4.10-20140425-24cf06.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb index 3ce4130b75b0fa6d923dc005eec0ad830f2e63a2..054ec92efa2c3c482e1f45379e743b2a882cb544 100644 --- a/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb +++ b/easybuild/easyconfigs/m/MOSAIK/MOSAIK-2.2.28-ictce-6.2.5-20140425-24cf06.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5bddb3e5d55009e267d4f2a347a17cd5ce29210b --- /dev/null +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.3-intel-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'MPC' +version = '1.0.3' + +homepage = 'http://www.multiprecision.org/' +description = """Gnu Mpc is a C library for the arithmetic of + complex numbers with arbitrarily high precision and correct + rounding of the result. It extends the principles of the IEEE-754 + standard for fixed precision real floating point numbers to + complex numbers, providing well-defined semantics for every + operation. At the same time, speed of operation at high precision + is a major design goal.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.multiprecision.org/mpc/download/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('GMP', '6.1.2'), + ('MPFR', '3.1.5'), +] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpc.%s' % SHLIB_EXT, 'include/mpc.h'], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b3d040944b14d9e2554974a6d700a73696479ddc --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.5-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.5' + +homepage = 'http://www.mpfr.org' + +description = """ + The MPFR library is a C library for multiple-precision floating-point + computations with correct rounding. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['ca498c1c7a74dd37a576f353312d1e68d490978de4395fa28f1cbd46a364e658'] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GMP', '6.1.2'), +] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb index 6e3b23ba3c47db9b4891bd9f72db96fd6e20ae61..d8d121944ac37a6f7e5707871777580efa7c2380 100644 --- a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb +++ b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb index 8577e3deb428d40a86db39a25f20d82dcdd81150..e553dd3905ad05270e098c0f9592a5c9b8b9cfe3 100644 --- a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb +++ b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb b/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb index 9830a06815e154406bd90ac3dfe295383ef4b698..733f6228b4ea8f086391dd5a7e86a12138168e9d 100644 --- a/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb +++ b/easybuild/easyconfigs/m/MRIcron/MRIcron-20150601.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa0e747a561e55c98b8305b87a4016bca4aa9972 --- /dev/null +++ b/easybuild/easyconfigs/m/MRtrix/MRtrix-3.0_RC2-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,26 @@ +name = 'MRtrix' +version = '3.0_RC2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.brain.org.au/software/index.html#mrtrix' +description = """MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner + robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'cstd': 'c++11'} + +source_urls = ['https://github.com/MRtrix3/mrtrix3/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['88187f3498f4ee215b2a51d16acb7f2e6c33217e72403a7d48c2ec5da6e2218b'] + +builddependencies = [ + ('Eigen', '3.3.4', '', True), +] +dependencies = [ + ('zlib', '1.2.11'), + ('Python', '2.7.13'), + ('Mesa', '17.0.2'), + ('Qt', '4.8.7'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb index 279406579deaaeb3d63dfff20f781c159d473ebe..d8f8b6c5762d040332fa36bb486d2cd7952ebfbb 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb index c1b84b6840f0e4e069852902e1dcf3679fc99829..1c9331d3a6b59f990c1ce076e4b49c88f8541059 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb index 7f6b9e72b527fb6d617863990fabaa9825c6fd74..c14d1b405f9f9e7ffdce895b346155133367d16b 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb index 89fe1f89da0a1d8deb2821bf1b712bb8fff613d2..5f3eab90e44322ec9cc2ab37f090cd35fa1aebd6 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb index 2a22c67912d9cafc596eacddf5e8450fd51fffe2..e8c2cf77933d2ab3febb86ca8bfd63bd3e2ecbe0 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..df73ec7490e3295074efdf52b9ed5be01d01110d --- /dev/null +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-4.0.0beta-goolf-1.7.20.eb @@ -0,0 +1,23 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'ConfigureMake' + +name = 'MUMmer' +version = '4.0.0beta' + +homepage = 'http://mummer.sourceforge.net/' +description = """MUMmer is a system for rapidly aligning entire genomes, + whether in complete or draft form. AMOS makes use of it.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/gmarcais/mummer/releases/download/v%(version)s/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +patches = ['mummer-%(version)s.patch'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MUMmer/mummer-4.0.0beta.patch b/easybuild/easyconfigs/m/MUMmer/mummer-4.0.0beta.patch new file mode 100644 index 0000000000000000000000000000000000000000..b95c705ef84ec579754d0b788547e080ec1abad8 --- /dev/null +++ b/easybuild/easyconfigs/m/MUMmer/mummer-4.0.0beta.patch @@ -0,0 +1,15 @@ +Fix a compilation error in version 4.0.0beta +https://github.com/gmarcais/mummer/issues/7 + +diff -ru mummer-4.0.0beta.orig/src/essaMEM/mummer.cpp mummer-4.0.0beta/src/essaMEM/mummer.cpp +--- mummer-4.0.0beta.orig/src/essaMEM/mummer.cpp 2017-04-06 19:49:04.000000000 +0200 ++++ mummer-4.0.0beta/src/essaMEM/mummer.cpp 2017-05-17 15:36:51.998784593 +0200 +@@ -218,7 +218,7 @@ + case 22: + #ifdef VERSION + std::cout << VERSION << '\n'; +-#elif ++#else + std::cout << "\n"; + #endif + exit(0); diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb index 026425a12b6a3eb6053ac9c903dda035676f0093..0107cb4698733c664ad481aac4e0d4f2eb62264c 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb index f41c1f775842229aba4abc9cd9b6ff9df9fc3d0e..57e72b59d65744a214f317e21559a1885eeea053 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb index eb4529c9fa1612a92e77c2b1fe749e6da1c8841d..839544e3dd82c899e0bffe48cd44439e9941756c 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Andreas Panteli , diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb index 2998cc688ab6606bdeb9cc72f47f3f4fc4672455..6ff84960ddb8404db51b356b43bbfbc2be35e7e0 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb index 467b83b6ce987dfcf90d0e1a627c06836ace24ef..03afecade9bb55c25f25c1069d86c976c613edad 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-intel-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb index a3e8ea9b643661e8ea77b79168307c69d944e1b8..d1011fd9c1e4b66acb21d6878ce13afd332a3ba0 100644 --- a/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/m/MUST/MUST-1.2.0-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb index 9ce401d07a653da2bc214bdb85275f1f7228ede5..39ec3bd32a6ddeec96cac1c53f7d865a2f4ef6d0 100644 --- a/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb index 973e13d8940994f53ac7b92dbbf57e276e44570f..086df1b66a53262dea2667fd392c10875e63d638 100644 --- a/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MView/MView-1.57-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb b/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..ba00fd6f18ba9f3925f2d7d18456c525869776c1 --- /dev/null +++ b/easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12-R-3.3.3.eb @@ -0,0 +1,38 @@ +name = 'MXNet' +version = '0.9.3' +versionsuffix = '-Python-%(pyver)s-R-%(rver)s' + +homepage = 'http://mxnet.io/' +description = """Flexible and Efficient Library for Deep Learning""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'cstd': 'c++11', 'opt': True, 'pic': True, 'openmp': True} + +source_urls = ['https://github.com/dmlc/mxnet/archive'] + +# MXNet pulls in a bunch of submodules which don't have releases. +# We download the current HEAD of the repos at the current time (13/03/17) +sources = [ + 'v%(version)s.tar.gz', # MXNet + 'https://github.com/dmlc/ps-lite/archive/6856021ca925c7.tar.gz', # ps-lite + 'https://github.com/dmlc/mshadow/archive/c29ac58320d7b0.tar.gz', # mshadow + 'https://github.com/dmlc/nnvm/archive/0d64855f741e04.tar.gz', # nnvm + 'https://github.com/dmlc/dmlc-core/archive/b32ec4aee65a66.tar.gz', # dmlc-core +] + +checksums = [ + "84971e4a0e2e9db3757623657aa5b9ec", # v0.9.3.tar.gz + "12c96664978c545a7269b93635719b18", # 6856021ca925c7.tar.gz + "3dc48183e123c650707bcf26a9254941", # c29ac58320d7b0.tar.gz + "fb04cb1694f1e66591a31a18bc92b451", # 0d64855f741e04.tar.gz + "da873c881758c0e10ac0928f86568456", # b32ec4aee65a66.tar.gz +] + +dependencies = [ + ('Python', '2.7.12'), + ('graphviz', '0.5.1', '-Python-%(pyver)s'), + ('OpenCV', '3.1.0'), + ('R', '3.3.3', '-X11-20160819'), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb index b454981b04a8be4d951d995531c838c7ce8269cb..9a34deab14ffc341fe89deeeb519ee1f493379e6 100644 --- a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb index e008b133f568b552edac02549da207fff20c417a..6c4e32238695b43aa2407c83aaa1e2ebb220c749 100644 --- a/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/MaCH/MaCH-1.0.18.c-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb b/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..08c7be27188afbf024422264006d1f58a8e1801f --- /dev/null +++ b/easybuild/easyconfigs/m/MaSuRCA/MaSuRCA-3.2.2-foss-2016a.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2017 University of Geneva +# Authors:: Yann Sagon +# License:: MIT/GPL +# $Id$ +# +## + +easyblock = 'ConfigureMake' + +name = 'MaSuRCA' +version = '3.2.2' + +homepage = 'http://www.genome.umd.edu/masurca.html' + +description = '''MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph + and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing + only short reads from Illumina sequencing or a mixture of short reads and long reads + (Sanger, 454, Pacbio and Nanopore).''' + +toolchain = {'name': 'foss', 'version': '2016a'} + +# need a temporary url to download it. Do it manually here: +# http://www.genome.umd.edu/masurca_form.html +sources = ['%(name)s-%(version)s.tar.gz'] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.5'), + ('Boost', '1.61.0'), + ('zlib', '1.2.8'), +] + +buildopts = "install-special" +start_dir = "global-1" + +sanity_check_paths = { + 'files': ['bin/masurca'], + 'dirs': ['include', 'lib'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..0f724f7b475911d2afa4c287063ed6eee9eee544 --- /dev/null +++ b/easybuild/easyconfigs/m/Mako/Mako-1.0.6-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,25 @@ +easyblock = 'PythonPackage' + +name = 'Mako' +version = '1.0.6' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.makotemplates.org' +description = """A super-fast templating language that borrows the best ideas from the existing templating languages""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = [ + '48559ebd872a8e77f92005884b3d88ffae552812cdf17db6768e5c3be5ebbe0d', # Mako-1.0.6.tar.gz +] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': ['bin/mako-render'], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s.egg'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb b/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb index 8357cd6199b33d861ee0004c64c81076052967b7..b268eeb16394bdfeb2d0d2ca3de24d7c473e48f2 100644 --- a/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb +++ b/easybuild/easyconfigs/m/Maq/Maq-0.7.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/m/MariaDB/MariaDB-10.1.24-intel-2017a.eb b/easybuild/easyconfigs/m/MariaDB/MariaDB-10.1.24-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9869ac1342ef24023c27f3cbff8d9a95b86198e8 --- /dev/null +++ b/easybuild/easyconfigs/m/MariaDB/MariaDB-10.1.24-intel-2017a.eb @@ -0,0 +1,42 @@ +easyblock = 'CMakeMake' + +name = 'MariaDB' +version = '10.1.24' + +homepage = 'https://mariadb.org/' +description = """MariaDB An enhanced, drop-in replacement for MySQL.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://downloads.mariadb.org/f/mariadb-%(version)s/source'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'MariaDB-10.1.13-link-rt-for-jemalloc.patch', +] + +dependencies = [ + ('zlib', '1.2.11'), + ('ncurses', '6.0'), + ('jemalloc', '4.5.0'), + ('PCRE', '8.40'), + ('XZ', '5.2.3'), + ('Boost', '1.64.0'), + ('libxml2', '2.9.4'), +] + +builddependencies = [('CMake', '3.8.2')] + +separate_build_dir = True + +configopts = "-DWITH_PCRE=system -DWITH_JEMALLOC=yes -DWITH_ZLIB=system -DMYSQL_MAINTAINER_MODE=ON " +configopts += "-DWITH_EMBEDDED_SERVER=ON " # for libmysqld.so & co +configopts += "-DWITHOUT_TOKUDB=ON " # not supported with Intel compilers + +sanity_check_paths = { + 'files': ['bin/mysql', 'bin/mysqld_safe', 'lib/libmysqlclient.%s' % SHLIB_EXT, 'lib/libmysqld.%s' % SHLIB_EXT, + 'scripts/mysql_install_db'], + 'dirs': ['include', 'share'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..6bf4ec7171370367f6ad8641c5aadc2b319fcc65 --- /dev/null +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-11.1.1.eb @@ -0,0 +1,17 @@ +name = 'Mathematica' +version = '11.1.1' + +homepage = 'http://www.wolfram.com/mathematica' +description = """Mathematica is a computational software program used in many scientific, engineering, mathematical +and computing fields.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['Mathematica_%(version)s_LINUX.sh'] +checksums = ['80cb3a25337d809bf865e5405cf5975dccf1dcaa20874ee301c98d41011281ce'] + +license_server = 'license.example.com' + +sanity_check_commands = [('mathematica', '--version')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb b/easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cae59a3997c72df4d20fba3f06a269c7a13947c2 --- /dev/null +++ b/easybuild/easyconfigs/m/Maven/Maven-3.5.0.eb @@ -0,0 +1,23 @@ +easyblock = 'PackedBinary' + +name = 'Maven' +version = '3.5.0' + +homepage = 'http://maven.apache.org/index.html' +description = """Binary maven install, Apache Maven is a software project management and comprehension tool. Based on +the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a +central piece of information. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['apache-maven-%(version)s-bin.tar.gz'] +source_urls = ['http://apache.org/dist/maven/maven-%(version_major)s/%(version)s/binaries/'] +checksums = ['beb91419245395bd69a4a6edad5ca3ec1a8b64e41457672dc687c173a495f034'] + +sanity_check_paths = { + 'files': ['bin/mvn'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb b/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb index 5b5a91c678c8f939cb6df7bb32ed96574936e4c1..752b5a4a61784298ef3240ad2b4da05350e568d1 100644 --- a/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb +++ b/easybuild/easyconfigs/m/Mawk/Mawk-1.3.4-goolf-1.4.10-20150503.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-11.2.1-foss-2015a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-11.2.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..42ded1fee47e9ffcd4929ee993886b2ead39ef67 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-11.2.1-foss-2015a.eb @@ -0,0 +1,63 @@ +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '11.2.1' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'https://mesa.freedesktop.org/archive/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] + +builddependencies = [ + ('flex', '2.6.0'), + ('Bison', '3.0.4'), + ('Autotools', '20150215'), + ('pkg-config', '0.29.1'), + ('libpthread-stubs', '0.3'), + ('makedepend', '1.0.5'), +] + +dependencies = [ + ('eudev', '3.1.5'), + ('libxml2', '2.9.3'), + ('libdrm', '2.4.68'), + ('LLVM', '3.7.1'), + ('X11', '20160819'), +] + +# Use the os provided libudev or the EB provided eudev +# osdependencies = ['libudev'] + +# GLU is not part anymore of Mesa package! +configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" +configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" +configopts += " --with-osmesa-bits=32 --enable-texture-float " + +# package-config files for os dependencies are in an os specific place +# preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' +preconfigopts = ' libtoolize && ' + +prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' + +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, + 'lib/libGLESv1_CM.%s' % SHLIB_EXT, 'lib/libGLESv2.%s' % SHLIB_EXT, + 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glx.h', 'include/GL/osmesa.h', + 'include/GL/gl.h', 'include/GL/glxext.h', + 'include/GL/glx_mangle.h', 'include/GLES/gl.h', + 'include/GLES2/gl2.h', 'include/GLES3/gl3.h'], + 'dirs': [] +} + +maxparallel = 1 + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bf4cca33d3cfc3e5447b6c51e390f74158f39c61 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-foss-2017a.eb @@ -0,0 +1,70 @@ +# the purpose of the easyconfig is to build a Mesa for software rendering, +# not hardware rendering. This means you want at least SSE4.2. We build: +# - llvmpipe: the high-performance Gallium LLVM driver +# - swr: Intel's OpenSWR +# it will try to use the llvmpipe by default. It you want swr, do: +# GALLIUM_DRIVER=swr + +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '17.0.2' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + +toolchain = {'name': 'foss', 'version': '2017a'} +# swr detects and builds parts specific for AVX and AVX2. If we use +# -xHost, this always gets overwritten and will fail. +toolchainopts = {'optarch': False} + +source_urls = [ + 'https://mesa.freedesktop.org/archive/', + 'https://mesa.freedesktop.org/archive/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] +sources = [SOURCELOWER_TAR_XZ] +patches = ['Mesa-%(version)s_fix-strip-llvm-flags.patch'] +checksums = [ + 'f8f191f909e01e65de38d5bdea5fb057f21649a3aed20948be02348e77a689d4', # mesa-17.0.2.tar.xz + '3edd64bc2a42b9065cfb86e872ba7e8a7c74144f7a867c2b5ec62d16078afb36', # Mesa-17.0.2_fix-strip-llvm-flags.patch +] + +builddependencies = [ + ('flex', '2.6.3'), + ('Bison', '3.0.4'), + ('Autotools', '20150215'), + ('pkg-config', '0.29.1'), + ('Mako', '1.0.6', '-Python-2.7.13'), + ('libxml2', '2.9.4'), +] + +dependencies = [ + ('zlib', '1.2.11'), + ('nettle', '3.3'), + ('libdrm', '2.4.76'), + ('LLVM', '4.0.0'), + ('X11', '20170314'), +] + +# GLU is not part anymore of Mesa package! +configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" +configopts += " --disable-gbm --disable-driglx-direct --with-gallium-drivers='swrast,swr' --disable-egl" +configopts += " --with-osmesa-bits=32 --enable-texture-float --enable-llvm-shared-libs " + +buildopts = 'V=1' + +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, + 'lib/libGLESv1_CM.%s' % SHLIB_EXT, 'lib/libGLESv2.%s' % SHLIB_EXT, + 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glx.h', 'include/GL/osmesa.h', + 'include/GL/gl.h', 'include/GL/glxext.h', + 'include/GL/glx_mangle.h', 'include/GLES/gl.h', + 'include/GLES2/gl2.h', 'include/GLES3/gl3.h'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb index 8bb12d31a371e4738c7116a49927e02c5a883e5e..fb11d4be6703d3dc2ac12402ef002aab099b8f8f 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-17.0.2-intel-2017a.eb @@ -19,14 +19,18 @@ toolchain = {'name': 'intel', 'version': '2017a'} # -xHost, this always gets overwritten and will fail. toolchainopts = {'optarch': False} -sources = [SOURCELOWER_TAR_XZ] source_urls = [ 'https://mesa.freedesktop.org/archive/', 'https://mesa.freedesktop.org/archive/%(version)s', 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', ] +sources = [SOURCELOWER_TAR_XZ] patches = ['Mesa-%(version)s_fix-strip-llvm-flags.patch'] +checksums = [ + 'f8f191f909e01e65de38d5bdea5fb057f21649a3aed20948be02348e77a689d4', # mesa-17.0.2.tar.xz + '3edd64bc2a42b9065cfb86e872ba7e8a7c74144f7a867c2b5ec62d16078afb36', # Mesa-17.0.2_fix-strip-llvm-flags.patch +] builddependencies = [ ('flex', '2.6.3'), @@ -34,7 +38,7 @@ builddependencies = [ ('Autotools', '20150215'), ('pkg-config', '0.29.1'), ('Mako', '1.0.6', '-Python-2.7.13'), - ('libxml2', '2.9.4', '-Python-2.7.13'), + ('libxml2', '2.9.4'), ] dependencies = [ diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..bf18a3528db74b082a1913227dc657218e036f4b --- /dev/null +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-GCCcore-6.4.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Mesquite' +version = '2.3.0' + +homepage = 'https://software.sandia.gov/mesquite/' + +description = """Mesh-Quality Improvement Library""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://software.sandia.gov/mesquite/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['4ab4ceadfa596e16c00dbb0e8b830a9112fa1b73291ca07633ec379a39b8bb28'] + +builddependencies = [ + ('binutils', '2.28'), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb index 3887c3f2e8db78e37fd4aef9cae31a223e30d3fb..2fa6bdbab4764c22f6a6a853fe59cb2155b041a4 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb index 98f80aa50e8566c553693a912bb5c7803eaaa2d6..ec9153655e13ae676bc7888ba22614b99cedfdb1 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb index 3af2bae350a4dc33a92dca393c996a77b93c141d..db06302aba868230e6caeca3df443f4afe92710f 100644 --- a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb index 3f4fca59197932da6c8187cd4b81f5971f4e6e4f..644456e884cf34be481e6659cc4b22c728eefb23 100644 --- a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb b/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb index 947de950b4e41c6bd143eda0ec8434055715624d..8577f2b939f860b8aac7010b43024ea942649076 100644 --- a/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/m/Minia/Minia-2.0.7-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/Miniconda2/Miniconda2-4.3.21.eb b/easybuild/easyconfigs/m/Miniconda2/Miniconda2-4.3.21.eb new file mode 100644 index 0000000000000000000000000000000000000000..a5ae211a5c53456856aa70f4c6fc932256fd8753 --- /dev/null +++ b/easybuild/easyconfigs/m/Miniconda2/Miniconda2-4.3.21.eb @@ -0,0 +1,17 @@ +easyblock = 'EB_Anaconda' + +name = 'Miniconda2' +version = '4.3.21' + +homepage = 'https://www.continuum.io/anaconda-overview' +description = """Built to complement the rich, open source Python community, +the Anaconda platform provides an enterprise-ready data analytics platform +that empowers companies to adopt a modern open data science analytics architecture. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://repo.continuum.io/miniconda/'] +sources = ['%(name)s-%(version)s-Linux-x86_64.sh'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb index c110a85228ad976748d4be98897face27b4c4d6a..653db9e11eb704f0734e30df4b76c015ddffc51a 100644 --- a/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb b/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb index c6a015a815e6889b96b54bfc28079307e21cde41..262f951ba094cc51ba84bf67e3b43de50c941314 100644 --- a/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/m/Minimac2/Minimac2-2014.9.15-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb index 4beaf4d721ffea94753ebab8f0b8ff3a6957068d..f59e41f39306e334774eeb535308ae00751d247e 100644 --- a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb index 5da93a4bfe9cb6be9a931c193907082b2d20e9b9..f84995643d42e91cdad58f330b49ae91e28f38f3 100644 --- a/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb index aa90066de817aa04da5119d3c76921ac87473002..025271c90bc1c38337f15f78ce7c5b72eeb32605 100644 --- a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb +++ b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_76.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb index 4774c63625a8e0ddc85e8f72f494a219f84c4d4f..46a5db5d00f4ea6f5bcd279d1e30dcc2b394fc89 100644 --- a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.4-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb index c8d608145e1fdea1c64373852fc5a8b2ccb9b41f..e09b7d71286ffc1707792d0afd38ac0a22958be7 100644 --- a/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/m/MuTect/MuTect-1.1.7-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb index 52da5ecd72393035adf38d0c0a0207d509928f00..433ec7e3b7b2629cd57e51bd0056003ca4498bb8 100644 --- a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.7-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -27,39 +27,38 @@ exts_defaultclass = 'PythonPackage' exts_list = [ ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), ('pyparsing', '2.1.9', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), ('pytz', '2016.6.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz/'], }), ('cycler', '0.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/c/cycler/'], + 'source_urls': ['https://pypi.python.org/packages/source/c/cycler/'], }), ('python-dateutil', '2.5.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - 'modulename': 'dateutil', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'modulename': 'dateutil', }), ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.python.org/packages/source/m/markupsafe'], + 'source_urls': ['https://pypi.python.org/packages/source/m/markupsafe'], }), ('click', '6.6', { - 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], + 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], }), ('PyYAML', '3.12', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyyaml'], - 'modulename': 'yaml', + 'source_urls': ['https://pypi.python.org/packages/source/p/pyyaml'], + 'modulename': 'yaml', }), ('simplejson', '3.8.2', { - 'source_urls': ['https://pypi.python.org/packages/source/s/simplejson/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/simplejson/'], }), ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], }), ('multiqc', version, { - #'source_tmpl': 'v%(version)s.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/m/multiqc/'], }), ] diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb index 4ca3af6861f5a9ab27bf6a901c4ce9f1de3dc098..0be8df4a6a271b387aed5e5f21b5de741a25ed6f 100644 --- a/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-0.9-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Adam Huffman # The Francis Crick Institute # Elements derived from work by Pablo Escobar @@ -29,36 +29,36 @@ exts_defaultclass = 'PythonPackage' exts_list = [ ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), ('pyparsing', '2.1.9', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), ('pytz', '2016.6.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz/'], }), ('cycler', '0.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/c/cycler/'], + 'source_urls': ['https://pypi.python.org/packages/source/c/cycler/'], }), ('python-dateutil', '2.5.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - 'modulename': 'dateutil', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + 'modulename': 'dateutil', }), ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.python.org/packages/source/m/markupsafe'], + 'source_urls': ['https://pypi.python.org/packages/source/m/markupsafe'], }), ('click', '6.6', { - 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], + 'source_urls': ['https://pypi.python.org/packages/source/c/click/'], }), ('PyYAML', '3.12', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyyaml'], - 'modulename': 'yaml', + 'source_urls': ['https://pypi.python.org/packages/source/p/pyyaml'], + 'modulename': 'yaml', }), ('simplejson', '3.8.2', { - 'source_urls': ['https://pypi.python.org/packages/source/s/simplejson/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/simplejson/'], }), ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], }), ('multiqc', version, { 'source_urls': ['https://pypi.python.org/packages/source/m/multiqc/'], diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb index ef981bb4df0567188d1e7ebd4b8c659652ed919f..fccc02c38ae655910312a96a834bea567a2bc9c4 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index e13659096ee58391accd23935e3faadfd7009d51..e6d5d57368d3f3b146fb9d8309cd998f665b346b 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index 7ab215e130a333d966f215791f38671eb850694a..9b88858f9031ed9abf07f837f95534704f1f9eaf 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb index 256925f8ab3a3b480426193659e4feb482f4f730..649ae523d57ff29548c8468f4600ed40f14893c0 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb b/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb index bff321b4b29d6cdc8897f6eec09d733c38c6281c..7ca6f969a43b2297eee339975db3240fe02b505c 100644 --- a/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-foss-2015a.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..29786d53157b482f98648e069ae54a3751c35066 --- /dev/null +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'makedepend' +version = '1.0.5' + +homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_UTIL_SOURCE] + +builddependencies = [ + ('X11', '20160819'), +] + +sanity_check_paths = { + 'files': ['bin/makedepend'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..402493847b9e83deebc4c47d8ab0043b6997b6b4 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-foss-2017a-Python-2.7.13.eb @@ -0,0 +1,48 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +versionsuffix = '-Python-%(pyver)s' + +libpng_ver = '1.6.29' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('libpng', libpng_ver), + ('freetype', '2.7.1', '-libpng-%s' % libpng_ver), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + 'checksums': ['cd7b2d1018258d7247a71425e9f26463dfb444d411c39569972f4ce586b0c9d8'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + 'checksums': ['0ffbc44faa34a8b1704bc108c451ecf87988f900ef7ce757b8e2e84383121ff1'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13-Qt-4.8.7.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13-Qt-4.8.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..591cb38e66a620023104dea16f7f9048c8d4f3dc --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13-Qt-4.8.7.eb @@ -0,0 +1,46 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +qtver = '4.8.7' +versionsuffix = '-Python-%%(pyver)s-Qt-%s' % qtver + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('Qt', qtver), + ('PyQt', '4.12', '-Python-%(pyver)s'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13-libpng-1.6.29.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13-libpng-1.6.29.eb new file mode 100644 index 0000000000000000000000000000000000000000..5b2a328b11e611eb8f22b2ea2552b345f9033b9f --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13-libpng-1.6.29.eb @@ -0,0 +1,44 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +libpng_ver = '1.6.29' +versionsuffix = '-Python-%%(pyver)s-libpng-%s' % libpng_ver + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('freetype', '2.7.1', '-libpng-%s' % libpng_ver), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa289dd53bf32a3e1666f715327bd80e7f1af568 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,43 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '2.7.13'), + ('freetype', '2.7.1'), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-3.6.1-libpng-1.6.29.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-3.6.1-libpng-1.6.29.eb new file mode 100644 index 0000000000000000000000000000000000000000..bc8e86d8ca45b1712d3f19bae38ce876fdfbee36 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-2.0.2-intel-2017a-Python-3.6.1-libpng-1.6.29.eb @@ -0,0 +1,44 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '2.0.2' +libpng_ver = '1.6.29' +versionsuffix = '-Python-%%(pyver)s-libpng-%s' % libpng_ver + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '3.6.1'), + ('freetype', '2.7.1', '-libpng-%s' % libpng_ver), +] + +exts_list = [ + ('Cycler', '0.10.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 87c8b17b1f9538ff9c3d3455a63c24e5a064e732..a27e4ffe9f69f0822ca75376629b189312f5bdd6 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index 7047839f2d2bd4b8556c360fd6881f9930640627..fcd0c73edf3e12acafe625363687f36fbe73e00b 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index 96e39f3adaa4e776f666565d0dc1185599a48112..a78726d466364db42bf002b1ddf784022db48846 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb index 13a13c28d8ea56de898bce183a0962ad4cac2ed4..6682ecef20bf68116c2ac49c5ffe2db26288e167 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb index fdcf4609afe1d62a1d2a306310e13bb1fa6f3662..4002011eea371be359cc566188fdb8e3cb7f74f9 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb index 6a4c7c8893d9232906b1adc9902f6541fd0f6847..59b48a2d385725760ced93fbccd4c39d6dc197bf 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb index 31e12db3cce2683bc08cbf925e9d8d29da3e82eb..ef13aa622d504d5c0f3ae406520f6b9191fa60c5 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/m/memkind/memkind-1.5.0-GCCcore-5.4.0.eb b/easybuild/easyconfigs/m/memkind/memkind-1.5.0-GCCcore-5.4.0.eb index 6a31d172218d65b17242a59a4e7b08c512f3fd5c..3b6604a72ec2c44676f1dbeb8d55d9eaaa7a464a 100644 --- a/easybuild/easyconfigs/m/memkind/memkind-1.5.0-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/m/memkind/memkind-1.5.0-GCCcore-5.4.0.eb @@ -16,12 +16,12 @@ sources = ['v%(version)s.tar.gz'] builddependencies = [ ('binutils', '2.26'), - ('Coreutils', '8.27'), # needed to ensure that ./build_jemalloc.sh works properly - ('Autotools', '20150215'), # needed to ensure that ./build_jemalloc.sh works properly + ('Coreutils', '8.27'), # needed to ensure that ./build_jemalloc.sh works properly + ('Autotools', '20150215'), # needed to ensure that ./build_jemalloc.sh works properly ] dependencies = [ - ('tbb', '2017_U5'), # optional, to enable the tbb heap manager + ('tbb', '2017_U5'), # optional, to enable the tbb heap manager ('numactl', '2.0.11') ] diff --git a/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb b/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..0e029fec25ff7887ed50488255d6a4950030d275 --- /dev/null +++ b/easybuild/easyconfigs/m/minimap2/minimap2-2.0rc1-foss-2016b.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Adam Huffman +# The Francis Crick Institute +# adam.huffman@crick.ac.uk + +easyblock = 'MakeCp' + +name = 'minimap2' +version = '2.0rc1' + +homepage = 'https://github.com/lh3/minimap2' +description = """Minimap2 is a fast sequence mapping and alignment program that can find overlaps between + long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed + alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to + ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited + test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace + BWA-MEM for long reads and contig alignment.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = ['%(name)s-%(version)s.tar.bz2'] +source_urls = ['https://github.com/lh3/%(name)s/releases/download/v%(version)s/'] +checksums = ['452a13d7e944da941b6f1996392890dbe4b7f4256954dd06c99ea69939446a5b'] + +files_to_copy = [(['%(name)s'], 'bin'), 'LICENSE.txt', 'NEWS.md', 'README.md', (['%(name)s.1'], 'share/man/man1')] + +sanity_check_paths = { + 'files': ['bin/%(name)s'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/modred/modred-2.0.2-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/m/modred/modred-2.0.2-foss-2016b-Python-3.5.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d45b071d8024d23a2e57e046dd2ecd7c3cf69440 --- /dev/null +++ b/easybuild/easyconfigs/m/modred/modred-2.0.2-foss-2016b-Python-3.5.2.eb @@ -0,0 +1,22 @@ +easyblock = 'PythonPackage' + +name = 'modred' +version = '2.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = "https://pypi.python.org/pypi/modred/" +description = """Compute modal decompositions and reduced-order models, easily, efficiently, and in parallel.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '3.5.2')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2015b-Python-2.7.10.eb index eb46a80abede11ecd68d85758e01b11f804761fd..d98ab8d52855e823f9abfa0c2593521b58bbcc6a 100644 --- a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2015b-Python-2.7.10.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('Python', '2.7.10'), - ('matplotlib', '1.5.0', versionsuffix), + ('matplotlib', '1.5.0', versionsuffix), ] runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc;" diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016a-Python-2.7.11.eb index 62f71cc876a9669d2279ad02cde4dfeb229700f8..c9fec8f432ce7e358182b597c8e50a177a115870 100644 --- a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016a-Python-2.7.11.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('Python', '2.7.11'), - ('matplotlib', '1.5.1', versionsuffix), + ('matplotlib', '1.5.1', versionsuffix), ] runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc;" diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016b-Python-2.7.12.eb index 1b74bd9124fb534e9fef0e8b271fd26dbffbd1f1..a8659a20bf2a91db108eb28e3d6de894c8513651 100644 --- a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2016b-Python-2.7.12.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('Python', '2.7.12'), - ('matplotlib', '1.5.3', versionsuffix), + ('matplotlib', '1.5.3', versionsuffix), ] runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc;" diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ac9bf55468e67a5d2d855b725e333e7cb1c249d --- /dev/null +++ b/easybuild/easyconfigs/m/molmod/molmod-1.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'molmod' +version = '1.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/molmod/' +description = "MolMod is a Python library with many compoments that are useful to write molecular modeling programs." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/molmod/molmod/releases/download/v%(version)s'] +sources = [SOURCE_TAR_GZ] +patches = ['molmod-%(version)s_ignore-errors-np-det.patch'] + +dependencies = [ + ('Python', '2.7.13'), + ('matplotlib', '2.0.2', versionsuffix), +] + +runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc;" +runtest += "python setup.py build_ext -i; nosetests -v" + +# fix permissions issue on files in share/molmod subdir +postinstallcmds = ['chmod -R o+r %(installdir)s/share/molmod'] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/molmod'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/molmod/molmod-1.1_ignore-errors-np-det.patch b/easybuild/easyconfigs/m/molmod/molmod-1.1_ignore-errors-np-det.patch new file mode 100644 index 0000000000000000000000000000000000000000..6dfb4ce31c98fd46431e1224165147121e0bb1ba --- /dev/null +++ b/easybuild/easyconfigs/m/molmod/molmod-1.1_ignore-errors-np-det.patch @@ -0,0 +1,16 @@ +fix for incompatibility between recent Intel MKL versions and numpy +see https://github.com/numpy/numpy/issues/8529 +--- molmod/transformations.py.orig 2017-06-28 11:04:49.405580197 +0200 ++++ molmod/transformations.py 2017-06-28 11:04:12.324857787 +0200 +@@ -469,8 +469,9 @@ + W[0] = 1 + W[1] = 1 + W[2] = 1 +- if numpy.linalg.det(A) < 0: +- W[2] = -1 ++ with numpy.errstate(invalid='ignore'): ++ if numpy.linalg.det(A) < 0: ++ W[2] = -1 + r = numpy.dot(Vt.transpose()*W, U.transpose()) + return Complete(r, numpy.dot(r, -mb) + ma) + diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.7-intel-2017a.eb b/easybuild/easyconfigs/m/motif/motif-2.3.7-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e0ba802b63ed8f910523ac7fc7bbb6ba509a6cdc --- /dev/null +++ b/easybuild/easyconfigs/m/motif/motif-2.3.7-intel-2017a.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'motif' +version = '2.3.7' + +homepage = 'http://motif.ics.com/' +description = """Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building + applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. + It was the standard toolkit for the Common Desktop Environment and thus for Unix.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['%(name)s-%(version)s.tar.gz'] +source_urls = [SOURCEFORGE_SOURCE] + +dependencies = [ + ('X11', '20170314'), + ('libpng', '1.6.29'), + ('xbitmaps', '1.1.1', '', True), + ('freetype', '2.7.1', '-libpng-1.6.29'), + ('libjpeg-turbo', '1.5.1'), + ('bzip2', '1.0.6'), +] +builddependencies = [ + ('Autotools', '20150215'), + ('flex', '2.6.4'), + ('Bison', '3.0.4'), + ('util-linux', '2.29.2'), +] + +# makefile is not parallel safe +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libMrm.a', 'lib/libUil.a', 'lib/libXm.a', 'bin/mwm', 'bin/uil', 'bin/xmbind'], + 'dirs': ['include/Mrm', 'include/uil', 'include/X11', 'include/Xm'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb index e5d94c2ee2c45647db67ce23b92f6c7d452933ca..b3cad4430c19783d7c80e996da7fa245a4cc6c2a 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb @@ -26,4 +26,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/mpi4py' % pyshortver], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb index 4e871b0231ac5c063d62bb0c1d3fedc06e0ca56b..b04c0fc1997a890f605d376a26326bbfe8191098 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb @@ -27,4 +27,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/mpi4py' % pyshortver], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb index 14d09f706a14a8f9242096f91c331d1b956ad514..9d22c53e8f806c9bcf0c84c27c2d107e1aa41a2e 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb @@ -24,4 +24,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/mpi4py' % pyshortver], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb index 96628ba336dc2e2c1992ca321e3ff265fd250cb7..7f116835facfe86b65130dfd0a2546f4b3dcb91d 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb @@ -24,4 +24,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/mpi4py' % pyshortver], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb index e8592db2a2b51cbe3b428d0014834baaff54956f..88c6067f4d6d34be546d6e3e67c304f0c7a7ebb6 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb @@ -34,4 +34,4 @@ sanity_check_commands = [ ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), ] -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb index 9ee5130156a98b763ea9d9e0826b4a56b010546e..5e3a747282c0e7ccae8d4c998ab8923b3453b08c 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb @@ -23,4 +23,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/mpi4py' % py_maj_min], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb index 8f22d6b6077390304892791b58e0d50067804930..633d85b7c215d902fd3a427775f4767e811e096a 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb @@ -31,4 +31,4 @@ sanity_check_commands = [ ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), ] -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb index 654b6f59ec1756e96f8a951965d4aa6a9afc3cc7..01ec7adf94fbb05dee546055d28f3b608421ce84 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb @@ -31,4 +31,4 @@ sanity_check_commands = [ ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), ] -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016b-Python-2.7.12-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016b-Python-2.7.12-timed-pingpong.eb index e2e1da4cf2fed21ddae3580171add02847b0c4c7..94ab105eff2e0938bc2fda9fa8bc116bcfeb40e6 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016b-Python-2.7.12-timed-pingpong.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016b-Python-2.7.12-timed-pingpong.eb @@ -31,4 +31,4 @@ sanity_check_commands = [ ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), ] -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb index 0bec59079b83e83a48b7b662db060f7e25a6ef25..934953ce0a9709046746141e9d10f8760079c129 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb @@ -23,4 +23,4 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/mpi4py' % py_maj_min], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2016b-Python-2.7.12.eb index eade0fd4f9c129a5587fbbda53d42a3f4e4383de..a1f0fb7dc3b236abe4cb384c1bc7f9c3179bea67 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2016b-Python-2.7.12.eb @@ -20,4 +20,4 @@ sanity_check_paths = { 'dirs': ['lib/python%(pyshortver)s/site-packages/mpi4py'], } -moduleclass = 'mpi' +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index 273a8c9d5f3d78764ba95476a1b0345c3e1e3ee6..598a5a64ee67d993ad65c9e01cdf7871e41b58f6 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index 1bb43bc486d63198b04de31940f0815d583d58cf..1c9d77935ad881fb198b9b6f4b60a09eb5b4bde5 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index 58c91d09bcfaa73a523f8382b7bc85cc01d0e314..80d940898f35a18f4433febe4a51a524fe9ea1ff 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste diff --git a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb index 6602e3fb19c6d6d43ddd2f757c027b80412448a9..f8f47b4abcf3d5b0a70b4963125512e9e96af958 100644 --- a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb index 56a88f540cebb4d5ab9cb7362a1223386572d2bf..e9f53eb87dc16a152f36571aad638d6e1cef1276 100644 --- a/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/m/mpmath/mpmath-0.19-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb index fb05915a84a1056efd91dac6050d85c59d75185b..b2be7d9ff5abeecc362b5c16a9b1a0c40fd2e7e7 100644 --- a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb index 1bc0838af6595163735fac36af26ce2cc63b7c10..d385b5af30cff30f4f41e30d431cc233f1418d26 100644 --- a/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mrFAST/mrFAST-2.6.0.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb index e58c648eee9413bef89eeea7c932fe09debee4ed..f6a3fa5bda917cd40040959d3bae15268304fcc2 100644 --- a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb index 933177a5af396aeae81594db1e3aeaccbad1eb5b..12a460e95359fbf4880a825819f980b1038e84ae 100644 --- a/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mrsFAST/mrsFAST-2.6.0.4-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..d54dab67dbea3d457e1070f05cb2bbae3efacfbb --- /dev/null +++ b/easybuild/easyconfigs/m/muParser/muParser-2.2.5-GCCcore-6.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'muParser' +version = '2.2.5' + +homepage = 'http://beltoforion.de/article.php?a=muparser' + +description = """ + muParser is an extensible high performance math expression parser library + written in C++. It works by transforming a mathematical expression into + bytecode and precalculating constant parts of the expression. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/beltoforion/muparser/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['0666ef55da72c3e356ca85b6a0084d56b05dd740c3c21d26d372085aa2c6e708'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = "--disable-samples --enable-shared" + +sanity_check_paths = { + 'files': ['include/muParser.h', 'lib/libmuparser.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/mutil/mutil-1.822.3-intel-2016a.eb b/easybuild/easyconfigs/m/mutil/mutil-1.822.3-intel-2016a.eb index b4d2d3ae9302b6b2d64b94ef2843676fb54aac9a..851772647c6d795bce98d572445438a853dcac43 100644 --- a/easybuild/easyconfigs/m/mutil/mutil-1.822.3-intel-2016a.eb +++ b/easybuild/easyconfigs/m/mutil/mutil-1.822.3-intel-2016a.eb @@ -17,7 +17,7 @@ sources = [ ] source_urls = [ SOURCEFORGE_SOURCE, - 'http://ftpmirror.gnu.org/coreutils', + 'http://ftpmirror.gnu.org/gnu/coreutils', ] dependencies = [ diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.12-foss-2017a-mpi.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.12-foss-2017a-mpi.eb index 8c793e844757985b1742978acad2a7590b6b5250..216d7633939fe4063643b8c9b219226f80213d75 100644 --- a/easybuild/easyconfigs/n/NAMD/NAMD-2.12-foss-2017a-mpi.eb +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.12-foss-2017a-mpi.eb @@ -22,5 +22,3 @@ osdependencies = ['tcsh'] charm_arch = "mpi-linux-x86_64" moduleclass = 'chem' - - diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.12-intel-2017a-mpi.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.12-intel-2017a-mpi.eb new file mode 100644 index 0000000000000000000000000000000000000000..fd5bdbb7edfa34d00356b63ad9356801b11150e3 --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.12-intel-2017a-mpi.eb @@ -0,0 +1,24 @@ +name = 'NAMD' +version = '2.12' +versionsuffix = '-mpi' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of + large biomolecular systems.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.6.6'), + ('FFTW', '3.3.6'), +] + +# /bin/csh is required by 'config' script +osdependencies = ['tcsh'] + +charm_arch = 'mpi-linux-x86_64' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index d17113cb0639be7ab40d8a2f45f2e8f814b6ec19..ef1067a4f7e3a1cb0359b77174f9123cb58ae516 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 6c053969c2dc2c45fafd1d251677e5f5127e23ca..09bfc070e600e8500c7d1c104fc6231c30a1b561 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb index f361a2932fc54ad54f280dc7ddffc274da7c1e0b..2631c95531c3f9897ef6e77a4f15970c57aa6bc4 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb index 777c4695fda56a9c3bada376f69ab096cc34f1d1..9995450154bbf2d6ad14aa5194f71129ab0f383d 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb index 61250ef0ab190312acd0bd996109c6b7efb7a30c..3f9dfdbbef1514a901b4c85a1f8ccf0a376bf0a8 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb index d0c5c529db57f0951f5db8d25ea6154c3636b5a3..73698fba89d9cac5660665677c7c47e3e04931ed 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb index 8eacf467e7158b7f34d04ac0afd9b8a3bd847e63..cabd7636da95a49fab1b1cb80f813547e865ec7d 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb index 940cf3e83b2f5ae25acf4bfdb99e0fcfdadb6f09..1dc98bc56e46b24f17de57aed0e61a542b16122f 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb index 9bf83664591478f6e96cede8f460c06bd3767ffd..470433544befc01bf1a9e6b2bd07b1d281b7c289 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb index a9ff8272379ac8f385e3939a9f022f77503e3ae8..1040eaec79c6871219690359d1059f0470c8f884 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb index e4df9a5cd4cb9c60f71743d4beec408d4523edc7..701ac12d5ccf53123e7d4f66ac851b3728d5f970 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb index 8ece8f5082134c1c09b8167d3f0e6ce132d4630f..3cb349ff147b870ef612d90d506ddcd97bf1a7a9 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb index 058a25ffb36f3964ae7281b65de24903aa554d9d..0742f88efdc0c92f33a821f6f7bf07e96c802aba 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb index f174be96fdf3081afbcb6e0a7876bbc6128fd0e8..98cd4d01eca1fa453b008db6a31e276aee2498f1 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-GCCcore-5.4.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..30ce2d87b827184ccee9893d4a79d708069e104c --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-GCCcore-5.4.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.08' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb index 54389e341593b305b74656e3ea913aa89c9e1f2f..4bec0e9960492984b4d3619625e346f57fedff8e 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb index bcb04e784170e74ffa5fb8edd101eec1f6efcaff..f4676199058c61aa2650650d87fe2af160286f63 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb index 691495f52f089d59729d7048ab3e2fd79c28b357..0067d98017f92739c214ee4f3ed358df4086f4f7 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb index 72c77d668585c8b0fe9ee29c38ae4e61004f6d2f..1930c1a1fcb878fa6792f7e37d319f8795600cb8 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb index 60a507ddb83985ad1a08dc85ce34dfc209dcce27..ca8a73843294b412e6767e12d54c63b06e41ebbf 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb index 617fb0352331ac77dd9f693af31014a4b577e247..072b3e15a79319cb6a5bd724dafe136e93ae7b43 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb index 77ceaa2d9a8cb9485589e5d6aa8467335b855b98..27304350622de81242665466bacd26600b858275 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb index 92d511ac9cd6bfc946b6d508bac6a433d757d39b..742f32c7b6c90af6a2cb0fb9351159be39652c9a 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb index 7fa10b2782207828b8c541e1e19928ccb08ec229..99068e7f7b7d77677443d68fb424e17eb40fbeaa 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb index 3097f4cb0eb343cd51caea00867d31f8c0ec9ad0..727f9c3f6c6432952e31a294ea889f8b14d3783e 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb index dc884fc26040838108fa8bf3503dc09a14401fa5..f733c9124c1559e57f7a06c9e856d079dc515f2d 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.01-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb index 0ef2b03e67e146f336e255ea33f977debf47b3ad..0a75781a62c4d4e663b81061ff8bb4af19955c94 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb index 1c877d704551f890f8ff6d2f404533e6e1b440cb..35000996fbbec3a7b5db9eef093e86ded68f3601 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb index daeffdca98a1fc5643be51cb0f6a9e7bd8874658..5428307bd74375803059f704769d671cec528ad4 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb index a4d8935beb619f3ef473c28b08bb083670a1204f..b15496c3c99f4f375bbbc62e2b48caa6d9c630b3 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.12.02.eb b/easybuild/easyconfigs/n/NASM/NASM-2.12.02.eb new file mode 100644 index 0000000000000000000000000000000000000000..3c181896245d8287eeba420d9e146b81748897a8 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.12.02.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.12.02' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'version': 'dummy', 'name': 'dummy'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..a992c888d4e3af4f324444dcba32a012658ff377 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.13.01-GCCcore-6.4.0.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.13.01' + +homepage = 'http://www.nasm.us/' + +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['08f97baf0a7f892128c6413cfa93b69dc5825fbbd06c70928aea028835d198fa'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-18.0.0-intel-2017a.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-18.0.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..708e64725c3f17b63013074500cd27d40d4f51c6 --- /dev/null +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-18.0.0-intel-2017a.eb @@ -0,0 +1,47 @@ +easyblock = 'ConfigureMake' + +name = 'NCBI-Toolkit' +version = '18.0.0' + +homepage = 'http://ncbi.github.io/cxx-toolkit/' +description = """The NCBI Toolkit is a collection of utilities developed for the + production and distribution of GenBank, Entrez, BLAST, and related services + by the National Center for Biotechnology Information.""" +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT', + 'ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/2017/Jan_10_2017/', +] +sources = ['ncbi_cxx--%s.tar.gz' % '_'.join(version.split('.'))] +patches = ['NCBI-Toolkit-%(version)s_fix-make-install.patch'] +checksums = [ + 'f9c47db64e5e31fcb8fdebb165c3eb895cb1668e419f4b917414aadf70f1bdf5', # ncbi_cxx--18_0_0.tar.gz + 'c3e0fe8dcf5bd95c9efd9dcf3613bb053a16597eb40d4c23b8f1f7ae5e19951a', # NCBI-Toolkit-18.0.0_fix-make-install.patch +] + +dependencies = [ + ('Boost', '1.58.0'), + ('SAMtools', '1.4.1'), + ('HTSlib', '1.4.1'), + ('Python', '2.7.13'), + ('libxslt', '1.1.29'), + ('DB', '6.2.32'), +] + +preconfigopts = 'export CFLAGS="$CFLAGS -wd3377" && export CXXFLAGS="$CXXFLAGS -wd3377" && ' +preconfigopts += 'export LIBS="$LIBS -lstdc++" && ' +configopts = '--with-boost=$EBROOTBOOST --with-python=$EBROOTPYTHON ' +configopts += '--with-libxml=$EBROOTLIBXML2 --with-libxslt=$EBROOTLIBXSLT ' +configopts += '--with-dll --with-bin-release --with-mt ' +configopts += '--without-debug --without-ccache' + +buildopts = 'SAMTOOLS=$EBROOTSAMTOOLS SAMTOOLS_INCLUDE="-I$EBROOTSAMTOOLS/include/bam -I$EBROOTHTSLIB/include" ' +buildopts += 'SAMTOOLS_LIBS="-L$EBROOTSAMTOOLS/lib -lbam -L$EBROOTHTSLIB/lib -lhts"' + +sanity_check_paths = { + 'files': ['bin/blastn', 'bin/blastp', 'bin/blastx', 'bin/table2asn'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-18.0.0_fix-make-install.patch b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-18.0.0_fix-make-install.patch new file mode 100644 index 0000000000000000000000000000000000000000..e02333d788cb0495eb827db3e10ec3e59ee8022b --- /dev/null +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-18.0.0_fix-make-install.patch @@ -0,0 +1,14 @@ +fix for "omitting directory" error on installing of 'inc/common' during 'make install' +author: Kenneth Hoste (HPC-UGent) +--- ncbi_cxx--18_0_0/src/build-system/Makefile.in.top.orig 2017-06-29 14:51:43.855712613 +0200 ++++ ncbi_cxx--18_0_0/src/build-system/Makefile.in.top 2017-06-29 14:54:47.876416764 +0200 +@@ -51,7 +51,8 @@ + done + cd $(includedir0) && find * -name CVS -prune -o -print |\ + cpio -pd $(pincludedir) +- $(INSTALL) -m 644 $(incdir)/* $(pincludedir) ++ $(INSTALL) -m 644 $(incdir)/*.h $(pincludedir) ++ $(INSTALL) -m 644 $(incdir)/common/* $(pincludedir)/common + ## set up appropriate build and status directories somewhere under $(libdir)? + + install-gbench: diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index b11e19a8317bd64e59945570c9a007552371ff7c..af111599e901e269216543ba91e29fa07ee57275 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/NCL/NCL-6.4.0-intel-2017a.eb b/easybuild/easyconfigs/n/NCL/NCL-6.4.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9fa92eb87b43a62c048fed333fef90437432a131 --- /dev/null +++ b/easybuild/easyconfigs/n/NCL/NCL-6.4.0-intel-2017a.eb @@ -0,0 +1,39 @@ +name = 'NCL' +version = '6.4.0' + +homepage = 'http://www.ncl.ucar.edu' +description = """NCL is an interpreted language designed specifically for scientific data analysis and + visualization.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'cstd': 'c99', 'openmp': True, 'pic': True} + +# download via https://www.earthsystemgrid.org/dataset/ncl.html +sources = ['%(namelower)s_ncarg-%(version)s.tar.gz'] + +patches = ['NCL-%(version)s_fix-types.patch'] + +hdf5_ver = '1.8.18' +dependencies = [ + ('cURL', '7.53.1'), + ('JasPer', '1.900.1'), + ('g2lib', '1.4.0'), + ('g2clib', '1.6.0'), + ('HDF', '4.2.12'), + ('HDF5', hdf5_ver), + ('netCDF', '4.4.1.1', '-HDF5-%s' % hdf5_ver), + ('netCDF-Fortran', '4.4.4', '-HDF5-%s' % hdf5_ver), + ('Szip', '2.1'), + ('freetype', '2.7.1', '-libpng-1.6.29'), + ('zlib', '1.2.11'), + ('GDAL', '2.2.0', '-Python-2.7.13-HDF5-%s' % hdf5_ver), + ('UDUNITS', '2.2.24'), + ('ESMF', '6.3.0rp1', '-HDF5-%s' % hdf5_ver), + ('bzip2', '1.0.6'), + ('cairo', '1.14.8'), + ('libiconv', '1.15'), + ('GSL', '2.3'), +] +builddependencies = [('makedepend', '1.0.5')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/NCL/NCL-6.4.0_fix-types.patch b/easybuild/easyconfigs/n/NCL/NCL-6.4.0_fix-types.patch new file mode 100644 index 0000000000000000000000000000000000000000..ecdfe831e0e64bf022ecdaa0dba00e4e32a80f4e --- /dev/null +++ b/easybuild/easyconfigs/n/NCL/NCL-6.4.0_fix-types.patch @@ -0,0 +1,94 @@ +fix compilation problems due to incorrect type +author: Kenneth Hoste (HPC-UGent) +--- ni/src/lib/nfp/SCRIP2KMLW.c.orig 2017-04-21 11:22:11.523861897 +0200 ++++ ni/src/lib/nfp/SCRIP2KMLW.c 2017-04-21 11:22:17.773923222 +0200 +@@ -8,17 +8,17 @@ + NhlErrorTypes SCRIP2KML_W(void) { + /* Defining the Arguments */ + /* Argument # 0 */ +- string * scrip_filename; ++ NclQuark* scrip_filename; + char * c_scrip_filename; + int ncid; + + /* Argument # 1 */ +- string * kml_filename; ++ NclQuark* kml_filename; + char * c_kml_filename; + FILE * fid; + + /* Argument # 2 */ +- string * gridname; ++ NclQuark* gridname; + char * c_gridname; + + /* End of Defining the Arguments */ +@@ -48,7 +48,7 @@ + + /* Getting Arguments values */ + /* Argument # 0 */ +- scrip_filename = (string *) NclGetArgValue( ++ scrip_filename = (NclQuark*) NclGetArgValue( + 0, + 3, + NULL, +@@ -61,7 +61,7 @@ + c_scrip_filename = NrmQuarkToString(*scrip_filename); + + /* Argument # 1 */ +- kml_filename = (string *) NclGetArgValue( ++ kml_filename = (NclQuark*) NclGetArgValue( + 1, + 3, + NULL, +@@ -74,7 +74,7 @@ + c_kml_filename = NrmQuarkToString(*kml_filename); + + /* Argument # 1 */ +- gridname = (string *) NclGetArgValue( ++ gridname = (NclQuark*) NclGetArgValue( + 2, + 3, + NULL, +@@ -212,4 +212,4 @@ + free(grid_corner_lon); + fclose(fid); + return (NhlNOERROR); +-} +\ No newline at end of file ++} +--- ni/src/lib/nfp/Unstruct2KMLW.c.orig 2017-04-21 11:20:50.403067496 +0200 ++++ ni/src/lib/nfp/Unstruct2KMLW.c 2017-04-21 11:21:34.883504667 +0200 +@@ -7,12 +7,12 @@ + NhlErrorTypes Unstruct2KML_W(void) { + /* Defining the Arguments */ + /* Argument # 0 */ +- string * filename; ++ NclQuark* filename; + char * c_filename; + FILE * fid; + + /* Argument # 1 */ +- string * gridname; ++ NclQuark* gridname; + char * c_gridname; + + /* Argument # 2 */ +@@ -50,7 +50,7 @@ + + /* Getting Arguments values */ + /* Argument # 0 */ +- filename = (string *) NclGetArgValue( ++ filename = (NclQuark*) NclGetArgValue( + 0, + 6, + NULL, +@@ -63,7 +63,7 @@ + c_filename = NrmQuarkToString(*filename); + + /* Argument # 1 */ +- gridname = (string *) NclGetArgValue( ++ gridname = (NclQuark*) NclGetArgValue( + 1, + 6, + NULL, diff --git a/easybuild/easyconfigs/n/NCO/NCO-4.6.6-intel-2017a.eb b/easybuild/easyconfigs/n/NCO/NCO-4.6.6-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b9edf1373e454e5463a5f270fbed66061abaef3e --- /dev/null +++ b/easybuild/easyconfigs/n/NCO/NCO-4.6.6-intel-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'NCO' +version = '4.6.6' + +homepage = "http://nco.sourceforge.net" +description = """manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://nco.sourceforge.net/src'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('Bison', '3.0.4'), + ('flex', '2.6.4'), +] + +dependencies = [ + ('UDUNITS', '2.2.24'), + ('expat', '2.2.0'), + ('ANTLR', '2.7.7', '-Python-2.7.13'), + ('libdap', '3.18.1'), + ('GSL', '2.3'), + ('netCDF', '4.4.1.1', '-HDF5-1.8.18'), +] + +sanity_check_paths = { + 'files': ['bin/nc%s' % x for x in ('ap', 'ap2', 'atted', 'bo', 'diff', 'ea', 'ecat', 'es', + 'flint', 'ks', 'pdq', 'ra', 'rcat', 'rename', 'wa')] + + ['lib/libnco.a', 'lib/libnco.%s' % SHLIB_EXT, 'lib/libnco_c++.a', 'lib/libnco_c++.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb index abf5bbc2772c00c35a6dc60e2e40149569f355da..37e86398d4cd56ae163a2504535c78d9d28d81f1 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb index 607bdc3f75d4f4d91ad2401938511210a6c1a754..e7dbf65423f017652af514756a6e67ae1508b13c 100644 --- a/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb +++ b/easybuild/easyconfigs/n/NLopt/NLopt-2.4.2-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/n/NRGLjubljana/NRGLjubljana-2.4.3.23-foss-2016b.eb b/easybuild/easyconfigs/n/NRGLjubljana/NRGLjubljana-2.4.3.23-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e11e467c7e69ad8bfb42c431856765e7ba951bdf --- /dev/null +++ b/easybuild/easyconfigs/n/NRGLjubljana/NRGLjubljana-2.4.3.23-foss-2016b.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'NRGLjubljana' +version = '2.4.3.23' + +homepage = 'http://nrgljubljana.ijs.si/' +description = """ + NRG Ljubljana is an efficient implementation of the numerical renormalization group (NRG) + technique for solving quantum impurity problems that arise as simplified models of + magnetic impurities and as effective models in the dynamical mean field theory (DMFT) + approach to bulk correlated materials. +""" + +docurls = 'http://nrgljubljana.ijs.si/examples/' +software_license = 'LicenseGPLv3' + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s.tar.gz'] +source_urls = ['http://nrgljubljana.ijs.si/'] + +configopts = '--with-tools --with-boost-serialization=boost_serialization' +configopts += ' CXXFLAGS="-Ddsyev=dsyev_ -Ddsyevr=dsyevr_ -Dzheev=zheev_ -Dzheevr=zheevr_"' +configopts += ' LDFLAGS="-lopenblas -L${EBROOTBOOST}/lib"' + +dependencies = [ + ('GMP', '6.1.2'), + ('GSL', '2.3'), + ('Boost', '1.61.0'), +] + +sanity_check_paths = { + 'files': ["bin/nrg2_4", "bin/nrgcmpl2_4"], + 'dirs': [], +} + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index b4bf60ef3c5d2218be7d43b944569d3a520ac1c8..c8e516844715ba5a20c9ef81d6b4fc0948b909f7 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index 1ff272d5d594898a4272ebc8d4dd962e3731c6f7..efcd1039a64301ab011658c6d3a39a92a4196438 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..51e898837ead8ccdea940318946645aedddd1e92 --- /dev/null +++ b/easybuild/easyconfigs/n/ncompress/ncompress-4.2.4.4-GCCcore-6.4.0.eb @@ -0,0 +1,39 @@ +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +easyblock = 'ConfigureMake' + +name = 'ncompress' +version = '4.2.4.4' + +homepage = 'http://ncompress.sourceforge.net/' + +description = """ + Compress is a fast, simple LZW file compressor. Compress does not have the + highest compression rate, but it is one of the fastest programs to compress + data. Compress is the defacto standard in the UNIX community for compressing + files. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://github.com/vapier/ncompress/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['2670439935e7639c3a767087da99810e45bc3997d0638b3094396043571e5aec'] + +builddependencies = [ + ('binutils', '2.28'), +] + +skipsteps = ['configure'] + +installopts = '' +installopts += 'DESTDIR=%(installdir)s ' +installopts += 'BINDIR=/bin ' +installopts += 'MANDIR=/man/man1 ' + +sanity_check_paths = { + 'files': ['bin/compress', 'man/man1/compress.1'], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0ee6b52eeb124a9790f24fea0bfe971ca043e648 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-6.4.0.eb @@ -0,0 +1,48 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' + +description = """ + The Ncurses (new curses) library is a free software emulation of curses in + System V Release 4.0, and more. It uses Terminfo format, supports pads and + color and multiple highlights and forms characters and function-key mapping, + and has all the other SYSV-curses enhancements over BSD Curses. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f551c24b30ce8bfb6e96d9f59b42fbea30fa3a6123384172f9e7284bcf647260'] + +patches = ['ncurses-%(version)s_gcc-5.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", + "infotocap", + "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", + "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.%s' % (x, y, SHLIB_EXT) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-gimkl-2017a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0f183aae81c53f415915b84c544393b760fe34bc --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-gimkl-2017a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'version': '2017a', 'name': 'gimkl'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['ncurses-%(version)s_gcc-5.patch'] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.so' % (x, y) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb index 01beb0993132c83db0026a35794d1c30d2ece86c..b07eebeedb28cd26c577370e1c86ba655c8a924d 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb index 26ed84e0cab6fdb983ca08e64f71190ae63115bc..39826e3412be1187e7a4b0695e17dad4aae45528 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb index 5320b4aa4c47317b445f27a209446b7590978927..fc4eee291e4840e039501436111c991a9e537c4b 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.7-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/n/ne/ne-3.0.1-foss-2015a.eb b/easybuild/easyconfigs/n/ne/ne-3.0.1-foss-2015a.eb index 489806193093c601569fb92766a3408be3ab4760..ebfa1fab311e2ab8e69118d23ef3b75e8db4ab0f 100644 --- a/easybuild/easyconfigs/n/ne/ne-3.0.1-foss-2015a.eb +++ b/easybuild/easyconfigs/n/ne/ne-3.0.1-foss-2015a.eb @@ -15,6 +15,7 @@ source_urls = ['http://ne.di.unimi.it/'] sources = [SOURCELOWER_TAR_GZ] skipsteps = ['configure'] +buildopts = "PREFIX=%(installdir)s" installopts = "PREFIX=%(installdir)s" sanity_check_paths = { diff --git a/easybuild/easyconfigs/n/ne/ne-3.0.1-gimkl-2017a.eb b/easybuild/easyconfigs/n/ne/ne-3.0.1-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b43f3a5a819e77dfa309e140c6d7b38fe15808b8 --- /dev/null +++ b/easybuild/easyconfigs/n/ne/ne-3.0.1-gimkl-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'ne' +version = '3.0.1' + +homepage = 'http://ne.di.unimi.it/' +description = """ne is a free (GPL'd) text editor based on the POSIX standard +that runs (we hope) on almost any UN*X machine. ne is easy to use for the +beginner, but powerful and fully configurable for the wizard, and most sparing +in its resource usage.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = ['http://ne.di.unimi.it/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('ncurses', '6.0'), +] + +skipsteps = ['configure'] +buildopts = "PREFIX=%(installdir)s" +installopts = "PREFIX=%(installdir)s" + +sanity_check_paths = { + 'files': ['bin/ne'], + 'dirs': ['share'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.3.0-intel-2017a-HDF5-1.8.18.eb b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.3.0-intel-2017a-HDF5-1.8.18.eb new file mode 100644 index 0000000000000000000000000000000000000000..62c2012841a59eb36f4a85fa6af7f23f85c2aae8 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.3.0-intel-2017a-HDF5-1.8.18.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'netCDF-C++4' +version = '4.3.0' +versionsuffix = '-HDF5-1.8.18' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/Unidata/netcdf-cxx4/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [('netCDF', '4.4.1.1', versionsuffix)] + +sanity_check_paths = { + 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017a-HDF5-1.8.18.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017a-HDF5-1.8.18.eb new file mode 100644 index 0000000000000000000000000000000000000000..188697273d019c91cc9fd542daf7b4748ce2f147 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.4-intel-2017a-HDF5-1.8.18.eb @@ -0,0 +1,18 @@ +name = 'netCDF-Fortran' +version = '4.4.4' +versionsuffix = '-HDF5-1.8.18' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/Unidata/netcdf-fortran/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [('netCDF', '4.4.1.1', versionsuffix)] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..713953985ccaf4286b1669c7f79511a09aeb23ae --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb @@ -0,0 +1,35 @@ +name = 'netCDF' +version = '4.4.1.1' +hdf5_ver = '1.10.1' +versionsuffix = '-HDF5-%s' % hdf5_ver + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['7f040a0542ed3f6d27f3002b074e509614e18d6c515b2005d1537fec01b24909'] + +dependencies = [ + ('HDF5', hdf5_ver), + ('cURL', '7.54.0'), + ('Szip', '2.1'), +] + +builddependencies = [ + ('CMake', '3.8.2'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb new file mode 100644 index 0000000000000000000000000000000000000000..8bc6d56640be08053da2ae2e1739b8538ca38448 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.4.1.1-intel-2017a-HDF5-1.8.18.eb @@ -0,0 +1,36 @@ +name = 'netCDF' +version = '4.4.1.1' +hdf5_ver = '1.8.18' +versionsuffix = '-HDF5-%s' % hdf5_ver + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = ['v%(version)s.tar.gz'] +source_urls = [ + 'https://github.com/Unidata/netcdf-c/archive/' +] + +dependencies = [ + ('HDF5', hdf5_ver), + ('cURL', '7.53.1'), + ('Szip', '2.1'), +] + +builddependencies = [ + ('CMake', '3.7.2'), + ('Doxygen', '1.8.13'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f52ebe137f82576264d8da418cd1e106800cf82 --- /dev/null +++ b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,23 @@ +name = 'netcdf4-python' +version = '1.2.9' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://unidata.github.io/netcdf4-python/' +description = """Python/numpy interface to netCDF.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf4-python/archive/'] +sources = ['v%(version)srel.tar.gz'] +checksums = ['bbb6d40d33f5fe8fbf211b5706ff4af9484a91a5ab50d9f6607858bd34c1d10c'] + +patches = ['netcdf4-python-1.1.8-avoid-diskless-test.patch'] + +dependencies = [ + ('Python', '2.7.13'), + ('netCDF', '4.4.1.1', '-HDF5-1.10.1'), + ('cURL', '7.54.0'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb index b72cd92143c5e2a4ad1f8e8c7eac415002609ccc..8beb3e1e0d63439d4d8ea61576896c543391d3b1 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb @@ -15,8 +15,10 @@ dependencies = [('GMP', '5.0.5')] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb index e764834b2d0c67b53b474eb7f1ecd8b0c79cf3b8..a611494ef085d9b82f632a1b406e85b3147fca8f 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb @@ -20,8 +20,10 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-foss-2016a.eb b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-foss-2016a.eb index fc3be53324f5ec393dcdf687ea45549349389329..3dfb0c2269e5967ddb5e8ad378c6ed23047d1c01 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-foss-2016a.eb @@ -20,8 +20,10 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-intel-2016a.eb b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-intel-2016a.eb index c725853009cf6d40666b06da1df14f979414cd06..a8958f54144794588e0282de5b3672a2a65c1ec6 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-intel-2016a.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-intel-2016a.eb @@ -20,8 +20,10 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.2-GCCcore-5.4.0.eb b/easybuild/easyconfigs/n/nettle/nettle-3.2-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c818d9c206f135a83be05a8ce2b86f625ecdf02b --- /dev/null +++ b/easybuild/easyconfigs/n/nettle/nettle-3.2-GCCcore-5.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'nettle' +version = '3.2' + +homepage = 'http://www.lysator.liu.se/~nisse/nettle/' +description = """Nettle is a cryptographic library that is designed to fit easily + in more or less any context: In crypto toolkits for object-oriented + languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, + or even in kernel space.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('binutils', '2.26', '', True)] + +dependencies = [ + ('GMP', '6.1.1'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], + 'dirs': ['include/nettle'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.2-foss-2016b.eb b/easybuild/easyconfigs/n/nettle/nettle-3.2-foss-2016b.eb index d8b0e1009de7d82f3bb5753ead3da9279d97a158..9ed2f963619b67aa3e7b594d40bb21e0e384cb96 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.2-foss-2016b.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.2-foss-2016b.eb @@ -20,8 +20,10 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.2-intel-2016b.eb b/easybuild/easyconfigs/n/nettle/nettle-3.2-intel-2016b.eb index 728d2523674a97e20a89edb120aaf765b5290546..9441d6c8c56d2e159c5d4557a6790025c60aa6ee 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.2-intel-2016b.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.2-intel-2016b.eb @@ -20,8 +20,10 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.3.0.eb b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..29bb670c946f6417fddf2302932090302a47fea0 --- /dev/null +++ b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.3.0.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'nettle' +version = '3.3' + +homepage = 'http://www.lysator.liu.se/~nisse/nettle/' +description = """Nettle is a cryptographic library that is designed to fit easily + in more or less any context: In crypto toolkits for object-oriented + languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, + or even in kernel space.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = [ + '46942627d5d0ca11720fec18d81fc38f7ef837ea4197c1f630e71ce0d470b11e', # nettle-3.3.tar.gz +] + +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), +] + +dependencies = [ + ('GMP', '6.1.2'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], + 'dirs': ['include/nettle'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ec88285ad3a3ae136dd69c403a8465265e9a303e --- /dev/null +++ b/easybuild/easyconfigs/n/nettle/nettle-3.3-GCCcore-6.4.0.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'nettle' +version = '3.3' + +homepage = 'http://www.lysator.liu.se/~nisse/nettle/' + +description = """ + Nettle is a cryptographic library that is designed to fit easily in more or + less any context: In crypto toolkits for object-oriented languages (C++, + Python, Pike, ...), in applications like LSH or GNUPG, or even in + kernel space. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['46942627d5d0ca11720fec18d81fc38f7ef837ea4197c1f630e71ce0d470b11e'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('GMP', '6.1.2'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', + 'pkcs1-conv', 'sexp-conv']] + + ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, + 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + 'dirs': ['include/nettle'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.3-intel-2017a.eb b/easybuild/easyconfigs/n/nettle/nettle-3.3-intel-2017a.eb index d8f9e8fc31fb3db53de9250813872e9da1ccb5f0..eb6cb21d8fbe8153beeee06696fd2192632fc54e 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.3-intel-2017a.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.3-intel-2017a.eb @@ -20,8 +20,10 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, - 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], + [('lib/libhogweed.a', 'lib64/libhogweed.a'), + ('lib/libhogweed.%s' % SHLIB_EXT, 'lib64/libhogweed.%s' % SHLIB_EXT), + ('lib/libnettle.a', 'lib64/libnettle.a'), + ('lib/libnettle.%s' % SHLIB_EXT, 'lib64/libnettle.%s' % SHLIB_EXT)], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb b/easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a5b9e6ff70ef9ca0e081a1efd1cde261dc71e182 --- /dev/null +++ b/easybuild/easyconfigs/n/ngmlr/ngmlr-0.2.6-foss-2015b.eb @@ -0,0 +1,26 @@ +easyblock = 'CMakeMake' + +name = 'ngmlr' +version = '0.2.6' + +homepage = 'https://github.com/philres/ngmlr' +description = """Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a + reference genome with a focus on reads that span structural variations.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/philres/ngmlr/archive'] + +builddependencies = [('CMake', '3.4.1')] + +dependencies = [ + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/ngmlr'], + 'dirs': [''] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..7ce46ec76ce225e4b98d4e6326cb2159c813fd2f --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCCcore-6.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' + +description = """ + The numactl program allows you to run your application program on specific + cpu's and memory nodes. It does this by supplying a NUMA memory policy to + the operating system before running your program. The libnuma library provides + convenient ways for you to add NUMA memory policies into your own program. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] +checksums = ['450c091235f891ee874a8651b179c30f57a1391ca5c4673354740ba65e527861'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.13.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/n/numpy/numpy-1.13.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0c0134be72d7850e6745d1d768abe340b5309b1 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.13.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.13.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] + +patches = [ + 'numpy-1.12.0-mkl.patch', + 'numpy-%(version)s_fix-intel.patch', +] + +dependencies = [ + ('Python', '2.7.13'), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.13.0_fix-intel.patch b/easybuild/easyconfigs/n/numpy/numpy-1.13.0_fix-intel.patch new file mode 100644 index 0000000000000000000000000000000000000000..ea2a3558287e0f4b50b27d8085b8b5249961b41c --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.13.0_fix-intel.patch @@ -0,0 +1,83 @@ +see https://github.com/numpy/numpy/issues/9278 and https://github.com/numpy/numpy/pull/9285 +diff --git a/numpy/distutils/ccompiler.py b/numpy/distutils/ccompiler.py +index 93ef4587c26..bbc3923bd6d 100644 +--- a/numpy/distutils/ccompiler.py ++++ b/numpy/distutils/ccompiler.py +@@ -80,6 +80,7 @@ def _needs_build(obj, cc_args, extra_postargs, pp_opts): + + return False + ++ + def replace_method(klass, method_name, func): + if sys.version_info[0] < 3: + m = types.MethodType(func, None, klass) +@@ -88,6 +89,25 @@ def replace_method(klass, method_name, func): + m = lambda self, *args, **kw: func(self, *args, **kw) + setattr(klass, method_name, m) + ++ ++###################################################################### ++## Method that subclasses may redefine. But don't call this method, ++## it i private to CCompiler class and may return unexpected ++## results if used elsewhere. So, you have been warned.. ++ ++def CCompiler_find_executables(self): ++ """ ++ Does nothing here, but is called by the get_version method and can be ++ overridden by subclasses. In particular it is redefined in the `FCompiler` ++ class where more documentation can be found. ++ ++ """ ++ pass ++ ++ ++replace_method(CCompiler, 'find_executables', CCompiler_find_executables) ++ ++ + # Using customized CCompiler.spawn. + def CCompiler_spawn(self, cmd, display=None): + """ +diff --git a/numpy/distutils/fcompiler/intel.py b/numpy/distutils/fcompiler/intel.py +index eb6150201c2..4dee8492f9b 100644 +--- a/numpy/distutils/fcompiler/intel.py ++++ b/numpy/distutils/fcompiler/intel.py +@@ -57,7 +57,7 @@ def get_flags(self): + + def get_flags_opt(self): # Scipy test failures with -O2 + v = self.get_version() +- mpopt = 'openmp' if v and int(v.split('.')[0]) < 15 else 'qopenmp' ++ mpopt = 'openmp' if v and v < '15' else 'qopenmp' + return ['-xhost -fp-model strict -O1 -{}'.format(mpopt)] + + def get_flags_arch(self): +@@ -123,7 +123,7 @@ def get_flags(self): + + def get_flags_opt(self): # Scipy test failures with -O2 + v = self.get_version() +- mpopt = 'openmp' if v and int(v.split('.')[0]) < 15 else 'qopenmp' ++ mpopt = 'openmp' if v and v < '15' else 'qopenmp' + return ['-fp-model strict -O1 -{}'.format(mpopt)] + + def get_flags_arch(self): +diff --git a/numpy/distutils/intelccompiler.py b/numpy/distutils/intelccompiler.py +index 3b7756b598c..3386775ee56 100644 +--- a/numpy/distutils/intelccompiler.py ++++ b/numpy/distutils/intelccompiler.py +@@ -19,7 +19,7 @@ def __init__(self, verbose=0, dry_run=0, force=0): + UnixCCompiler.__init__(self, verbose, dry_run, force) + + v = self.get_version() +- mpopt = 'openmp' if v and int(v.split('.')[0]) < 15 else 'qopenmp' ++ mpopt = 'openmp' if v and v < '15' else 'qopenmp' + self.cc_exe = ('icc -fPIC -fp-model strict -O3 ' + '-fomit-frame-pointer -{}').format(mpopt) + compiler = self.cc_exe +@@ -59,7 +59,7 @@ def __init__(self, verbose=0, dry_run=0, force=0): + UnixCCompiler.__init__(self, verbose, dry_run, force) + + v = self.get_version() +- mpopt = 'openmp' if v and int(v.split('.')[0]) < 15 else 'qopenmp' ++ mpopt = 'openmp' if v and v < '15' else 'qopenmp' + self.cc_exe = ('icc -m64 -fPIC -fp-model strict -O3 ' + '-fomit-frame-pointer -{}').format(mpopt) + compiler = self.cc_exe diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index 0a78e38ade3221c55f36951e39e6afe42efefbfe..fcdbb10aadc948e5a8cda209927371015e38683a 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb index eb591f01b3856b65130b88688d4d56f92efad8cd..c1e9a74c6fa85d6b22a724d7ce01801ac6a01cf2 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb index 12dba48bf0852df7c4f031968e2f5d00248d13a4..a71841771ba27fa592cebbda7e61e58afc0c4343 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb index ee452fb08e6e382a4e9f29d116a20aca25649b5b..5a93a730dc6f784ba0b9c5f5748006a67a8af302 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb index d50dab2154905f6f81841b49c2d3b4d66d918b3a..cbd3a839746583c564fbaf4fe3e22c987dc3df73 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb index 6a2ab2df295538ba8e9251e633c4844994418c4e..c6cc202feddddba735822270b8f111e5d5801727 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb index 34e2fdbcea5512d2a15da831f62ae07863f27b20..c859d761df9a48c16617c5fdc41894b814b8d4db 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.2-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb index 2f3c2cf42185e1e65916ab339b22b5e5f433739c..4c1cdfb92244cd03eacc452073b1466f341bc2a7 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-2.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-4.0.0.2-OpenMPI-2.0.2.eb b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.0.2-OpenMPI-2.0.2.eb index c9312c40449cd838916b3f4cd03194e8d1578bb5..20a5faa3973b9337e3ced229600504f7bbcf2ab6 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-4.0.0.2-OpenMPI-2.0.2.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.0.2-OpenMPI-2.0.2.eb @@ -3,8 +3,8 @@ easyblock = "PackedBinary" name = "ORCA" version = '4.0.0.2' -openmpiversion = '2.0.2' -versionsuffix = '-OpenMPI-%s' % openmpiversion +ompi_ver = '2.0.2' +versionsuffix = '-OpenMPI-%s' % ompi_ver homepage = 'http://cec.mpg.de/forum/' description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry @@ -16,19 +16,18 @@ description = """ORCA is a flexible, efficient and easy-to-use general purpose t toolchain = {'name': 'dummy', 'version': ''} # Download from https://cec.mpg.de/orcadownload/index.php -sources = ['%%(namelower)s_%s_linux_x86-64_openmpi%s.tbz' % (version.replace('.', '_'), openmpiversion.replace('.', ''))] +sources = ['%%(namelower)s_%s_linux_x86-64_openmpi%s.tbz' % (version.replace('.', '_'), ompi_ver.replace('.', ''))] checksums = ['a5b8ecdd3d004af4bc8190c986f34e11'] -dependencies = [('OpenMPI', openmpiversion, '-GCC-6.3.0-2.27')] +dependencies = [('OpenMPI', ompi_ver, '-GCC-6.3.0-2.27')] sanity_check_paths = { 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', - 'rocis', 'scf', 'scfgrad', 'soc'] - for y in ["", "_mpi"]] + + 'rocis', 'scf', 'scfgrad', 'soc'] for y in ['', '_mpi']] + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', - 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + ['orca'], diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..b28cb7f1c00c700f7ee1b631a9204bae539d188d --- /dev/null +++ b/easybuild/easyconfigs/o/ORCA/ORCA-4.0.1-OpenMPI-2.0.2.eb @@ -0,0 +1,37 @@ +easyblock = "PackedBinary" + +name = "ORCA" +version = '4.0.1' + +ompi_ver = '2.0.2' +versionsuffix = '-OpenMPI-%s' % ompi_ver + +homepage = 'http://cec.mpg.de/forum/' +description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry + with specific emphasis on spectroscopic properties of open-shell molecules. + It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- + and multireference correlated ab initio methods. + It can also treat environmental and relativistic effects.""" + +toolchain = {'name': 'dummy', 'version': ''} + +# Download from https://cec.mpg.de/orcadownload/index.php +sources = ['%%(namelower)s_%s_linux_x86-64_openmpi%s.tar.xz' % (version.replace('.', '_'), ompi_ver.replace('.', ''))] + +checksums = ['6644b95fdb16e117b870fd9e5cea8b4f829f1547d5df4e87d52ef08e3f1ee310'] + +dependencies = [('OpenMPI', ompi_ver, '-GCC-6.3.0-2.27')] + +sanity_check_paths = { + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] for y in ['', '_mpi']] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca'], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/o/OSU-Micro-Benchmarks/OSU-Micro-Benchmarks-5.3.2-foss-2017a.eb b/easybuild/easyconfigs/o/OSU-Micro-Benchmarks/OSU-Micro-Benchmarks-5.3.2-foss-2017a.eb index 3f1b8657b8989734d30069d08da144acbc71b5d9..009425ac2bf08d1a96a26e4cb59eea3870fc2d93 100644 --- a/easybuild/easyconfigs/o/OSU-Micro-Benchmarks/OSU-Micro-Benchmarks-5.3.2-foss-2017a.eb +++ b/easybuild/easyconfigs/o/OSU-Micro-Benchmarks/OSU-Micro-Benchmarks-5.3.2-foss-2017a.eb @@ -22,4 +22,3 @@ sanity_check_paths = { } moduleclass = 'perf' - diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb index 831526692c13f152f7754aaa9db7ed3b3d65c984..2b97f66bf400da92df15ed6a70fa3f6637bd0879 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb index 3d6eb22e24d5f2d424ef80840e030fc070cc27e9..47ba7c137cf8180e513eed2286a977e84e767a91 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb index 60c9ce8691c6e8f36bbdec05df5fac58981f76a5..6e577637597a49ce3954367a4473a0e16147a472 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb index 341f324efb4c044aea22ac1f738ee8015b06602e..b3e56a6986895008c499da3cf74fd3bc76202049 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-1.2.1-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb b/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb index 4f583c01b16b6ce7120e5003306b9460ad846819..d76e3051fb876f8aaf7e4a7600f96a8bdeedad3f 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-1.5.1-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb index 3b724d990f936421caee4f1361e8d34cd3a7098a..2e24f54ef8683f093c8f18737c76122b4e0b8043 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb index c2ecdc414e1a32be41fb58fc327d1aa46685089f..41a3d0f3c9f9a3ab1fb545aeffcee7780e8d2bb0 100644 --- a/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb +++ b/easybuild/easyconfigs/o/OTF2/OTF2-2.0-foss-2017a.eb @@ -1,9 +1,9 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer -## License:: 3-clause BSD +# License:: 3-clause BSD # # This work is based on experiences from the UNITE project # http://apps.fz-juelich.de/unite/ @@ -38,4 +38,3 @@ sanity_check_paths = { } moduleclass = 'perf' - diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb index 335f79d16b292fadb11e42c9d76e2cd02abbe5aa..7bcec339f4ec1412477609e01ca9885136d3c150 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb index d34174340c21b01fdcfc7a12d2c39a51e37adeba..d26e10aab343ee83728662b87303bce3ecf98857 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb index c408bf08bd6844364be244d7304ceb7704e61978..51d2029f8b4818d5e654d741036e4e674b5cf3c7 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb index ed69d393e309d9aaedf30c6b04683fb8df2a1e77..fa31b8119c854f65c622f0b786ab553c9ada22ac 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli , Fotis Georgatos diff --git a/easybuild/easyconfigs/o/Octave/Octave-4.2.1-intel-2017a.eb b/easybuild/easyconfigs/o/Octave/Octave-4.2.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b28e83ac96381904eb1a96ddfc01948f9c1732a2 --- /dev/null +++ b/easybuild/easyconfigs/o/Octave/Octave-4.2.1-intel-2017a.eb @@ -0,0 +1,65 @@ +easyblock = 'ConfigureMake' + +name = 'Octave' +version = '4.2.1' + +homepage = 'http://www.gnu.org/software/octave/' +description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['%(name)s-%(version)s_intel.patch'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('flex', '2.6.4'), + ('Autotools', '20150215'), + ('libtool', '2.4.6'), + ('gperf', '3.0.4'), +] + +dependencies = [ + ('X11', '20170314'), + ('PCRE', '8.40'), + ('ncurses', '6.0'), + ('libreadline', '6.3'), + ('arpack-ng', '3.5.0'), + ('cURL', '7.53.1'), + ('FLTK', '1.3.4'), + ('fontconfig', '2.12.1', '-libpng-1.6.29'), + ('freetype', '2.7.1', '-libpng-1.6.29'), + ('GLPK', '4.61'), + ('GL2PS', '1.4.0'), + ('gnuplot', '5.0.6'), + ('Java', '1.8.0_131', '', True), + ('zlib', '1.2.11'), + ('Mesa', '17.0.2'), + ('libGLU', '9.0.0'), + ('Qhull', '2015.2'), + ('Qt5', '5.8.0'), + ('HDF5', '1.8.18', '-serial'), + ('qrupdate', '1.1.2'), + ('SuiteSparse', '4.5.5', '-METIS-5.1.0'), + ('GraphicsMagick', '1.3.25'), + ('FFTW', '3.3.6'), +] + +configopts = 'MOC=$EBROOTQT5/bin/moc ' +configopts += 'UIC=$EBROOTQT5/bin/uic ' +configopts += 'RCC=$EBROOTQT5/bin/rcc ' +configopts += 'LRELEASE=$EBROOTQT5/bin/lrelease ' +configopts += '--with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK" --disable-docs ' +# correct for both GCC and Intel compilers +configopts += '--enable-fortran-calling-convention=gfortran' + +sanity_check_paths = { + 'files': ['bin/octave'], + 'dirs': [] +} + +sanity_check_commands = [('octave', '--eval "1+2"')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb b/easybuild/easyconfigs/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb index 26fbd9394a27708cd241ac3e6559497dcc93739c..88870a022f22db013082ad9df6ebd96ec7ea92d7 100644 --- a/easybuild/easyconfigs/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb +++ b/easybuild/easyconfigs/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb @@ -41,10 +41,10 @@ configopts += '--with-netcdf-prefix=$EBROOTNETCDFMINFORTRAN ' configopts += '--with-etsf-io-prefix=$EBROOTETSF_IO ' configopts += '--with-pfft-prefix=$EBROOTPFFT --with-mpifftw-prefix=$EBROOTFFTW ' -runtest = 'MPIEXEC=`which mpirun` check' +runtest = 'MPIEXEC=`which mpirun` check' sanity_check_paths = { - 'files': ["bin/octopus_mpi"], + 'files': ["bin/octopus_mpi"], 'dirs': [] } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-4.9.4-2.25-LAPACK-3.6.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-4.9.4-2.25-LAPACK-3.6.0.eb index 28a8a8d5c5cf2636eea07003a7f594f55b230035..475ac86396ba71722fae6697efb1a68bd160fb40 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-4.9.4-2.25-LAPACK-3.6.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-4.9.4-2.25-LAPACK-3.6.0.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0.eb index 92f08781e2d69acd6fd7a0d8e52c3ceba2ed1417..06c39b82613d5e279b4208b0dcdceb941f0edbc5 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.0.eb index 0b62a315f7bfccf8b06901d303df49c81afbb246..eaa818e6252b8ad3808e814f4ec9402d2cae4028 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.0.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1.eb index 85f10c536ab8a5bddb784cf96edf44be2d46cc85..dc7f656e6a6dde4c77445d0c4034c35f097d336e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-gompi-2016.07-LAPACK-3.6.1.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-gompi-2016.07-LAPACK-3.6.1.eb index 80a706fa331223901ad0788e8e9ac0d9152986be..17a2ecb8289ad1f464b69ad24304d0a193f2c8fb 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-gompi-2016.07-LAPACK-3.6.1.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.18-gompi-2016.07-LAPACK-3.6.1.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-5.4.0-2.26-LAPACK-3.7.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-5.4.0-2.26-LAPACK-3.7.0.eb index 4c55b7dc6ceeb2d5afa2b909e34a5525fc3ce8bf..61372509b2a5bc82f4f10969826c6fa7ecb17cb1 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-5.4.0-2.26-LAPACK-3.7.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-5.4.0-2.26-LAPACK-3.7.0.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0.eb index 143c9edae7fb4e1df920724d36be148f48a9b745..d9aed5da097991aff5c72a655952166f0897c3cd 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompi-2016.09-LAPACK-3.6.1.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompi-2016.09-LAPACK-3.6.1.eb index 0978b24ceddc792dc43002f640eee0bc7cfccea3..761f990fdbd2c0965b123fa93450498718f5538e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompi-2016.09-LAPACK-3.6.1.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompi-2016.09-LAPACK-3.6.1.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompic-2016.10-LAPACK-3.6.1.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompic-2016.10-LAPACK-3.6.1.eb index 55794b44742b487687b77be8810d063d17ba14d8..f4055fe601ba9278d524e2bd269302111f317c8b 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompic-2016.10-LAPACK-3.6.1.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.19-gompic-2016.10-LAPACK-3.6.1.eb @@ -21,7 +21,7 @@ lapack_unpack_cmd += 'tar -C lapack-netlib --strip-components=1 -zxf %s; cd -' sources = [ 'v%(version)s.tar.gz', - (lapack_src, lapack_unpack_cmd), + {'filename': lapack_src, 'extract_cmd': lapack_unpack_cmd}, large_src, timing_src, ] diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016a.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016a.eb index 141e1f7cdd8129a8adb690859e17cf6dd258ca72..2faed16c6d49fe389e4b531f6dbcf7d92a03a375 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016a.eb @@ -19,7 +19,7 @@ source_urls = [ sources = [ '%(version)s.zip', - ('ippicv_linux_20151201.tgz', 'cp %s %(builddir)s'), + {'filename': 'ippicv_linux_20151201.tgz', 'extract_cmd': "cp %s %(builddir)s"}, ] builddependencies = [ diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016b.eb index 1495f695f6d4fbe661a710c9b89e234ae62979ec..31bcd04d21f40f0a383c67db525593dfc179ad28 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016b.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-foss-2016b.eb @@ -19,7 +19,7 @@ source_urls = [ sources = [ '%(version)s.zip', - ('ippicv_linux_20151201.tgz', 'cp %s %(builddir)s'), + {'filename': 'ippicv_linux_20151201.tgz', 'extract_cmd': "cp %s %(builddir)s"}, ] builddependencies = [ diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb index 23de8de267aa92e2f9ac0aaa2bb7b5f2aad06db1..7b5c4b2c99eb0f12bd509638956df04a122bea4a 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb @@ -19,7 +19,7 @@ source_urls = [ sources = [ '%(version)s.zip', - ('ippicv_linux_20151201.tgz', 'cp %s %(builddir)s'), + {'filename': 'ippicv_linux_20151201.tgz', 'extract_cmd': "cp %s %(builddir)s"}, ] patches = ['OpenCV-%(version)s_with_IPP.patch'] diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb index 0b6f2141a73dd22e67a7d5e8314c8a353b523821..dadbcc0e052b9794894f036d2b5e25ece975e992 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb @@ -19,7 +19,7 @@ source_urls = [ sources = [ '%(version)s.zip', - ('ippicv_linux_20151201.tgz', 'cp %s %(builddir)s'), + {'filename': 'ippicv_linux_20151201.tgz', 'extract_cmd': "cp %s %(builddir)s"}, ] patches = ['OpenCV-%(version)s_with_IPP.patch'] diff --git a/easybuild/easyconfigs/o/OpenCoarrays/OpenCoarrays-1.9.0-gompi-2017a.eb b/easybuild/easyconfigs/o/OpenCoarrays/OpenCoarrays-1.9.0-gompi-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1b457179dacf620bf5554917111c91bfe187f3a --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCoarrays/OpenCoarrays-1.9.0-gompi-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'CMakeMake' + +name = 'OpenCoarrays' +version = '1.9.0' + +homepage = 'https://github.com/sourceryinstitute/opencoarrays' +description = """OpenCoarrays is an open-source software project that supports +the coarray Fortran (CAF) parallel programming features of the Fortran 2008 +standard and several features proposed for Fortran 2015 in the draft Technical +Specification TS 18508 Additional Parallel Features in Fortran.""" + +toolchain = {'name': 'gompi', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/sourceryinstitute/opencoarrays/releases/download/%(version)s'] + +sources = [SOURCE_TAR_GZ] + +separate_build_dir = True + +builddependencies = [('CMake', '3.8.2')] + +sanity_check_paths = { + 'files': ['bin/caf', 'bin/cafrun', 'include/opencoarrays.mod', ('lib/libcaf_mpi.a', 'lib64/libcaf_mpi.a')], + 'dirs': [], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb index 7985e4b2671c60eb4b7cad3206bb05011871d543..b17352b6a7ecbc5af9a9628bd8ab13676c91046e 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb @@ -21,7 +21,7 @@ patches = [ ('ThirdParty-%(version)s_cleanup.patch', ".."), # patch should not be applied in OpenFOAM subdir ] -dependencies = [ +dependencies = [ ('libreadline', '6.3'), # OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes) ('METIS', '5.1.0', '-32bitIDX'), diff --git a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb index 33c2f06dffd4d2ff3673d5f82a15dd28e44e7eea..c0eaaaab718e70187802bbfcd538c6fb314b1191 100644 --- a/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/o/OpenMM/OpenMM-6.1-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -43,9 +43,6 @@ sanity_check_paths = { modextrapaths = { 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', -} - -modextravars = { 'OPENMM_INCLUDE_PATH': 'include', 'OPENMM_LIB_PATH': 'lib', } diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27-opa.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27-opa.eb index 3413573e743cb394ee369408f0a66389efac6447..3736ce11cc1467bd825c715295ead7844f88664f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27-opa.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.0.2-GCC-6.3.0-2.27-opa.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'OpenMPI' version = '2.0.2' -versionsuffix= '-opa' +versionsuffix = '-opa' homepage = 'http://www.open-mpi.org/' description = """The Open MPI Project is an open source MPI-2 implementation.""" @@ -33,5 +33,3 @@ sanity_check_paths = { } moduleclass = 'mpi' - - diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..88a05b260e9678fbfcb668441740ade25167cc2d --- /dev/null +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'OpenPGM' +version = '5.2.122' + +homepage = 'http://code.google.com/p/openpgm/' + +description = """ + OpenPGM is an open source implementation of the Pragmatic General Multicast + (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable + and scalable multicast protocol that enables receivers to detect loss, request + retransmission of lost data, or notify an application of unrecoverable loss. + PGM is a receiver-reliable protocol, which means the receiver is responsible + for ensuring all data is received, absolving the sender of reception + responsibility. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/openpgm/'] +sources = ['libpgm-%(version)s.tar.gz'] +checksums = ['6b895f550b95284dcde7189b01e04a9a1c1f94579af31b1eebd32c2207a1ba2c'] + +builddependencies = [ + ('binutils', '2.28'), +] + +start_dir = 'pgm' + +sanity_check_paths = { + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb index 69dec5c347e9f49ad15158b66fd4e04b1c6dc912..bb8c2ce07105af587a341194e96e9f21911506a3 100644 --- a/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OptiX/OptiX-3.8.0-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors:: Stephane Thiell ## easyblock = 'Binary' diff --git a/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb index 7960265e875aa5d7bd8accf80e803345d4e28b7c..28cec1fdb8e03da4b9678bbdf4b1d6eca594f8a3 100644 --- a/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OptiX/OptiX-3.9.0-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors:: Stephane Thiell ## easyblock = 'Binary' diff --git a/easybuild/easyconfigs/o/OrfM/OrfM-0.6.1-foss-2016b.eb b/easybuild/easyconfigs/o/OrfM/OrfM-0.6.1-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..904722c27984f8390f1bea7a5cc859c18bcb1433 --- /dev/null +++ b/easybuild/easyconfigs/o/OrfM/OrfM-0.6.1-foss-2016b.eb @@ -0,0 +1,36 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: Copyright 2014-2017 adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exequiel Sepulveda +# License:: LGPL-v3.0 +# +# Notes:: +## + +easyblock = 'ConfigureMake' + +name = 'OrfM' +version = '0.6.1' + +homepage = 'https://github.com/wwood/OrfM' +description = """A simple and not slow open reading frame (ORF) caller. +No bells or whistles like frameshift detection, +just a straightforward goal of returning a FASTA file +of open reading frames over a certain length from a FASTA/Q file +of nucleotide sequences. +""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'usempi': True} + +sources = ['%(namelower)s-%(version)s.tar.gz'] +source_urls = ['https://github.com/wwood/OrfM/releases/download/v%(version)s'] + +sanity_check_paths = { + 'files': ['bin/orfm'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb b/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb index 665ae52c04d529e79b628283fed4fc30ce53d3a8..ce8b6a310c6049085ec4c02e66a72acea60c4d1c 100644 --- a/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb index a3f69b41dfb4e964cab6ef529cb80189d3dc2d9e..4ce9f6acc1d1ee04cf0f20167d6d46bce0a68fb1 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb index 5d277564d74812fd54f21d7d5c0cdb6e68ba1136..663098d7eaf56bdbe797736f54c3f46a37050f60 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index 6ad4131d3db3006cb92feafcead572e7ef79c840..abf2f2f348c3c733c2f5645024a0b6ea424bd081 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index 7dfa97e510fbf8910ebeaa9381d19d9d451781e7..5fdc97ba25b9860dc1c107f752be40a859e4708b 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb index d485c2eb5712568c2707c76737dbc0facb1fd307..552073498302aa5e8a427ae65e308b37316b0a9a 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index c548c0f167e153eb1d0ba90d5b1a548688f902bc..beb87afa42fdb72f4f2c1ec87df40220c3a48e08 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb index cbf18980bca4811f0997088527ee305a5621c3db..591c1a1cfb9e75d63c84f32bb08f80665f52057d 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.0-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb index b5babf4529e2f11a63dff30a4740b5cd67f16da7..aedb5208f2d654e0e5d0f97cbeea44200aeccf8c 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb index e76514b4cc54e18cd2ebf0ea24bf994b246a15a2..3aaed283711bc269500b147bf5d5a86fcbe00192 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.4.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..19d05f84520cadbecca27eaad761b23909b4e16a --- /dev/null +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.5.1-GCCcore-6.4.0.eb @@ -0,0 +1,55 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html +## + +easyblock = 'ConfigureMake' + +name = 'PAPI' +version = '5.5.1' + +homepage = 'http://icl.cs.utk.edu/projects/papi/' + +description = """ + PAPI provides the tool designer and application engineer with a consistent + interface and methodology for use of the performance counter hardware found + in most major microprocessors. PAPI enables software engineers to see, in near + real time, the relation between software performance and processor events. + In addition Component PAPI provides access to a collection of components + that expose performance measurement opportunites across the hardware and + software stack. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://icl.cs.utk.edu/projects/papi/downloads/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['49dc2c2323f6164c4a7e81b799ed690ee73158671205e71501f849391dd2c2d4'] + +builddependencies = [ + ('binutils', '2.28'), +] + +start_dir = 'src' + +parallel = 1 + +runtest = 'fulltest' + +sanity_check_paths = { + 'files': ["bin/papi_%s" % x + for x in ["avail", "clockres", "command_line", "component_avail", + "cost", "decode", "error_codes", "event_chooser", + "mem_info", "multiplex_cost", "native_avail", + "version", "xml_event_info"]], + 'dirs': [], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb index e1ffffe6152d84a7b9754868291d9abb0cdd2e5f..b212b2e2eff888917b6433ac7144b65dccceef8b 100644 --- a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb index 795cc4f409ca348c9fe0770d32b069c62f4c7e6b..a0d4aaa3eed01c81567ee6d0936d259ec36b7d3d 100644 --- a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index 4ba60f4784654bc4969d52d35e8330ccc66256c5..ed87db57299d39e1c06328c30e33ab9a107c88f6 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.40-GCCcore-6.3.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9dc9830554289594302d504c31bb5693297a4d2b --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-GCCcore-6.3.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.40' + +homepage = 'http://www.pcre.org/' +description = """The PCRE library is a set of functions that implement regular expression pattern matching using + the same syntax and semantics as Perl 5.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = [ + '1d75ce90ea3f81ee080cdc04e68c9c25a9fb984861a0618be7bbf676b18eda3e', # pcre-8.40.tar.gz +] + +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.27', '', True), +] + +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.40-gimkl-2017a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..fedf649f9d097727ead8548cb280753611767e73 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.40-gimkl-2017a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.40' + +homepage = 'http://www.pcre.org/' +description = """The PCRE library is a set of functions that implement regular expression pattern matching using + the same syntax and semantics as Perl 5.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..197001b9a8ac08f9084187cf164aeb2731525091 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.41-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.41' + +homepage = 'http://www.pcre.org/' + +description = """ + The PCRE library is a set of functions that implement regular expression + pattern matching using the same syntax and semantics as Perl 5. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['244838e1f1d14f7e2fa7681b857b3a8566b74215f28133f14a8f5e59241b682c'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.11'), +] + +configopts = """\ + --enable-utf\ + --enable-unicode-properties\ + --enable-pcre16\ + --enable-pcre32\ +""" + +sanity_check_paths = { + 'files': ['bin/pcre-config', 'include/pcre.h', + 'share/man/man3/pcre.3', 'lib/libpcre32.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig', 'share/doc/pcre/html', 'share/man/man1'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb index 48f05702911454a17be17a6a5f67f79ca2445604..e3744fc95aef014410f3af92e8caf5809825c9d0 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb index f50e7519a2ac13354066b88d16058fc84ae3e9e2..381266ea154c2f528ecde6b686acf547f8302e04 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb b/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb index 4acb86b02182eb26cf833201e8ae3242291af8a0..17487e128362aac8830522e9e9781ba76ed3d647 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.20-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb index bb1e979e805cd021d8d5d004d8f85da8e6045c3f..ca20f00b88c5bdaac66c13190666ea441e0ba689 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.20-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb b/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb index c1c3137a73a9ae2235801c7dfb6dd740f6f2ce21..7f1635e8a89ea4d7b89b9aeecdc516639636fe92 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.22-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb index 5ee2eb89d1a6840c2054edb07435099de8024bcf..31449b54e7969e5542eada01c66f138c62f1d7c8 100644 --- a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -18,7 +18,7 @@ source_urls = ['http://sco.h-its.org/exelixis/web/software/pear/files/'] sources = ['%(namelower)s-%(version)s-src.tar.gz'] dependencies = [ - ('zlib', '1.2.8'), + ('zlib', '1.2.8'), ('bzip2', '1.0.6'), ] diff --git a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb index 63d0944c2801c8859172e7bdd919ac31abe780fe..8aa84dce9f230df4a2dc5b14becf42a2e4d9422f 100644 --- a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' @@ -17,7 +17,7 @@ sources = ['%(namelower)s-%(version)s.tar.gz'] checksums = ['1ab079a2cea61aee816012966b7ccacd'] dependencies = [ - ('zlib', '1.2.8'), + ('zlib', '1.2.8'), ('bzip2', '1.0.6'), ] diff --git a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb index 33e09a2ad6dc3ed20f784d99f4c549fc7667ec53..3ec9dad84916ef6880bedc08e6a6d95c25dcd05d 100644 --- a/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb +++ b/easybuild/easyconfigs/p/PEAR/PEAR-0.9.8-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' @@ -17,7 +17,7 @@ sources = ['%(namelower)s-%(version)s.tar.gz'] checksums = ['1ab079a2cea61aee816012966b7ccacd'] dependencies = [ - ('zlib', '1.2.8'), + ('zlib', '1.2.8'), ('bzip2', '1.0.6'), ] diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.7.5-intel-2016b-downloaded-deps.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.7.5-intel-2016b-downloaded-deps.eb index 87e4b65750cc408efa1ce685383789971d2148b2..44a7eca4df3ddff40f3a23b377e2489b60e5288a 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.7.5-intel-2016b-downloaded-deps.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.7.5-intel-2016b-downloaded-deps.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] # (build) dependencies provided through EasyBuild builddependencies = [('CMake', '3.5.2')] -dependencies = [('HDF5','1.8.18')] +dependencies = [('HDF5', '1.8.18')] # external packages that are downloaded with --download-=1 and --download--static=1 download_deps_static = ['hypre', 'metis', 'ml', 'mumps', 'parmetis', 'prometheus', 'ptscotch', 'suitesparse', diff --git a/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb b/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb index 32e6adc9b7a90a9068057b47b04a760e16b6309f..6c18c7665d9a8e1366ecb1f5a493a605382d957f 100644 --- a/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/p/PGDSpider/PGDSpider-2.1.0.3-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/PGI/PGI-16.1-CDK-GCC-4.9.2-2.25.eb b/easybuild/easyconfigs/p/PGI/PGI-16.1-CDK-GCC-4.9.2-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..d25dc435aeaf5bfbf013d2cd934d75701be10262 --- /dev/null +++ b/easybuild/easyconfigs/p/PGI/PGI-16.1-CDK-GCC-4.9.2-2.25.eb @@ -0,0 +1,25 @@ +name = 'PGI' +version = '16.1' + +homepage = 'http://www.pgroup.com/' +description = "C, C++ and Fortran compilers from The Portland Group - PGI" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['pgicdk-%(version_major)s%(version_minor)s.tar.gz'] +checksums = ['442c044b9690a84b6600cd6919480bcb'] + +gccver = '4.9.2' +binutilsver = '2.25' +versionsuffix = '-CDK-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), + ('numactl', '2.0.11', '', ('GCCcore', gccver)), +] + +# license file +license_file = HOME + '/licenses/pgi/license.dat' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb b/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb index 9a71ee57a7aa7b03d334d982cdc362317e9bea79..d018f814f23635bd995bab69d888e150d49809db 100644 --- a/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb +++ b/easybuild/easyconfigs/p/PHASE/PHASE-2.1.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..050e2ce1affadfd9de873dbfea2a7d854dca150e --- /dev/null +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'PIL' +version = '1.1.7' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.pythonware.com/products/pil' +description = """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. + This library supports many file formats, and provides powerful image processing and graphics capabilities.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://effbot.org/downloads/'] +sources = ['Imaging-%(version)s.tar.gz'] + +patches = ['PIL-%(version)s-find-deps.patch'] + +dependencies = [ + ('zlib', '1.2.11'), + ('Python', '2.7.13'), + ('libjpeg-turbo', '1.5.1'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +options = {'modulename': 'PIL'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb index 3dbf1f6dcc42ec05a02b64bfd237b91ed53a1cfe..f172624a2643a533832e68b6c9aa5f0b96ec6293 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2015b'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] patches = ['PLINK-1.07_redeclaration.patch'] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb index 3a9a5a29e93ad257e3ac850417097f09f0575f33..08a47b6d0e3e14c4f564e77fbb9440ccccb9cb6f 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] patches = ['PLINK-1.07_redeclaration.patch'] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb index 8d5a6d2eb62ed53d9542a2a09cdd66a255e6111a..9782f91b1d109b73191d78e7d4e8f7fe6249dd1a 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -22,7 +22,7 @@ toolchain = {'name': 'foss', 'version': '2016b'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['hhttp://zzz.bwh.harvard.edu/plink/dist/'] patches = ['PLINK-1.07_redeclaration.patch'] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb index 136c6e53e0f3000ba11c397f8f15e50f9f7e0f4d..5a77a49bf9b69a7109cd5fae0177a3f56fb7eeb6 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli , @@ -11,14 +11,14 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = "plink-1.07-src: Whole-genome association analysis toolset" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] dependencies = [('zlib', '1.2.7')] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb index 0a3b48db5b713e79644b50e7c0e1287bf37305ee..8f4e1d77e16fd83b3f7a5f17bcb58dbd16284121 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -8,7 +8,7 @@ easyblock = 'MakeCp' name = 'PLINK' version = '1.07' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/' description = """ PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for @@ -20,7 +20,7 @@ toolchain = {'name': 'ictce', 'version': '6.2.5'} toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist/'] dependencies = [('zlib', '1.2.8')] diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb index 7f7c8b29a2133f6367d22e7fe0d05220d301e291..f2b5d4628b9881ee625707a6141deaea7c427f6a 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb @@ -3,13 +3,13 @@ easyblock = 'PackedBinary' name = 'PLINK' version = '1.07-x86_64' -homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +homepage = 'http://zzz.bwh.harvard.edu/plink/dist' description = 'plink-1.07-src: Whole-genome association analysis toolset' toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['%(namelower)s-%(version)s.zip'] -source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +source_urls = ['http://zzz.bwh.harvard.edu/plink/dist'] checksums = ['fd0bafeda42151b20534e4f97b0d97df'] diff --git a/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb b/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb index 1ed4041bd8385c13811cd42a9cf74b31d1d2b26d..de9f5cdd555343dbfe9459055c0f1ddd56bda901 100644 --- a/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/PLINKSEQ/PLINKSEQ-0.10-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb b/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb index b01bff9fa68804c7ba08401c73ebec59b6077d43..95b77ff16a15202c6cf9b36402d40c30716c300b 100644 --- a/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb +++ b/easybuild/easyconfigs/p/POV-Ray/POV-Ray-3.7.0.0-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index 1cdadae78c70b957483dfc5857c52968c900b672..ba3147aeda1714e1935ce126409eab9567159583 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index 6807550e34fa4f7c017beb030462f0a75d3fd75c..e1d9097357463681f2080be314a9c1fedd7d0a27 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb index 59d3a92f6906df4b4f17a034667880fb86f2f3f7..d91b5c16d2f86504d1b66c7063da8ffd94708af8 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb index cc4ff83fdde4217abd126aeda7b560ca628f82a9..e37d705eb5c53e5c71ce4bd47a8b57a2a6907a69 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb index 463e126a1ae7787f4ec56c7ec98397dfb97c69f6..e5306a0264dcb318c7989a0ff3c806c844763762 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb index 261f83dd09ca436fc714c0d859baad042c30bec2..a8599a45321bf0fcaeb074a4a06a8a9d74c32664 100644 --- a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -108,7 +108,7 @@ modextrapaths = { postinstallcmds = [ "sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/*.pl", # fix shebang line "chmod +x %(installdir)s/*.pl" # add execution permission -] +] sanity_check_paths = { 'files': ['prinseq-lite.pl', 'prinseq-graphs.pl', 'prinseq-graphs-noPCA.pl'], diff --git a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb index f2db54990629ba4376beeda8d4769e468a998e16..b72be2600bc9dd7d9c7d9d4f6eb929057ba28e27 100644 --- a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -106,7 +106,7 @@ modextrapaths = { postinstallcmds = [ "sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/*.pl", # fix shebang line "chmod +x %(installdir)s/*.pl" # add execution permission -] +] sanity_check_paths = { 'files': ['prinseq-lite.pl', 'prinseq-graphs.pl', 'prinseq-graphs-noPCA.pl'], diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb index 8e0db7e9a170db6194c106e125e95c70a0144722..00f55ae5a34d04150b24157308fb6484137c8276 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou @@ -21,7 +21,7 @@ source_urls = ['http://download.osgeo.org/proj/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', 'bin/nad2bin', 'bin/proj'], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb index 34a1760e0e9adf7dc21d8d159b4cf3aadc4de2d7..f7686d47694c3bd8155c904bbc8b8dcb71b09a90 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb index 968d0aa66a1fcb4fe3d9f5cfe51fea5e52ae86db..76fc53fbf07c316a6051336e5453105a8b15891d 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb index ce218bd9f2f67a4d7202a617feafa4fc74329f11..200a9f51d13935a0e5283c667d3ea96f5a07287d 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou @@ -22,7 +22,7 @@ source_urls = ['http://download.osgeo.org/proj/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', 'bin/nad2bin', 'bin/proj'], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb index 8073931ffce7aacd20ca64abffc5e19e177afab3..3cf2db1934d01424e82a9116beefd327a582ce6e 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb index 324f2cd7f8b9dca770e5632ea84d5d371397b25e..f00ad2c895a8d95533b56f6e19321c50c17b579b 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb index 67b8275d1e8c9e2009b14661827c3040d2ae269e..6f79ab820c25f8049eaa7413541e739df691b3f9 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb index bcb1e2a0d171f9dcda9ae72d70eebdca74be1ce1..9de59c679b33155fadc9403ac70fce8567fd69f4 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb index 7b1bb021f39096d25cff1ed07aec6cad2b458218..f1ed8cc4b89eef96861c7a32f259152343e99e3a 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb index 0bd9d6514dc09fed7be0cc973ee5d2c190b0810e..cfe024f452e78500d2af4cc827d5d40a790544a3 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb index 07a9a99e429601b8c609862ff7bc3a39ce894afa..b01ce62b7f78c4fe139ac775acc2e1574b8669b8 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.3-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2014-2015 The Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.40.5-intel-2017a.eb b/easybuild/easyconfigs/p/Pango/Pango-1.40.5-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d7561a197b5679e406b39a82c8648019c060a7b9 --- /dev/null +++ b/easybuild/easyconfigs/p/Pango/Pango-1.40.5-intel-2017a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'Pango' +version = '1.40.5' + +homepage = 'http://www.pango.org/' +description = """Pango is a library for laying out and rendering of text, with an emphasis on internationalization. +Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the +context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('X11', '20170314'), + ('GLib', '2.52.0'), + ('cairo', '1.14.8'), + ('HarfBuzz', '1.3.1'), +] + +builddependencies = [('GObject-Introspection', '1.52.0')] + +configopts = "--disable-silent-rules --enable-introspection=yes --enable-static --enable-shared " + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb index 973a23b9d22f0c778b92ff6004a230fe1d24b4bf..6cdd113ef0442012e57626ade3bf8f8954a36b60 100644 --- a/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/p/Parallel-ForkManager/Parallel-ForkManager-1.06-goolf-1.4.10-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Andreas Panteli diff --git a/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb b/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb index aabbb0dc2439a5650798caed56c847d497d2be94..8a33b156195234b0b17ba404c964b0b51a8c8d68 100644 --- a/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/p/Paraver/Paraver-4.4.5-GCC-4.7.3.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb b/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb index f5a5940d0dd87b925c9accd9b2440b8260ebacdd..6e4a28d4a2bf6d4103d5288bb7c217f6c1c8e861 100644 --- a/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Paraver/Paraver-4.5.6-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb index beddc1be80d02da0ed4f61c26fd683ebf7078c37..cb8631f82886d0060cc34b7ec21dab51883f92b6 100644 --- a/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.0-foss-2015a-mt.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.0-foss-2015a-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..7848df036c3c7e506236376da4713656bd3a9399 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.0-foss-2015a-mt.eb @@ -0,0 +1,901 @@ +name = 'Perl' +version = '5.22.0' +use_perl_threads = True +versionsuffix = '-mt' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +dependencies = [ + ('DB', '6.0.30'), # for DB_File module + ('SQLite', '3.8.9'), # for DBD::SQLite module + ('expat', '2.1.0'), # for XML::Parser I think + ('libxml2', '2.9.2'), # for XML::LibXML +] + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +maxparallel = 1 + +# runtest = 'test' + +exts_list = [ + ('Module::Build', '0.4210', { # std module but recent BioPerl needs a recent version for some reason + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::MakeMaker', '7.04', { + 'source_tmpl': 'ExtUtils-MakeMaker-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('local::lib', '2.000011', { + 'source_tmpl': 'local-lib-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('DB_File', '1.835', { + 'source_tmpl': 'DB_File-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PM/PMQS/'], + }), + ('DBI', '1.633', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Tree::DAG_Node', '1.26', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Try::Tiny', '0.22', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Devel::StackTrace', '2.00', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Exception::Class', '1.39', { + 'source_tmpl': 'Exception-Class-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Deep', '0.117', { + 'source_tmpl': 'Test-Deep-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Algorithm::Diff', '1.15', { + 'source_tmpl': 'Algorithm-Diff-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/N/NE/NEDKONZ/'], + }), + ('Text::Diff', '1.41', { + 'source_tmpl': 'Text-Diff-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Differences', '0.61', { + 'source_tmpl': 'Test-Differences-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Exception', '0.32', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Test::Requires', '0.08', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Test::Tester', '0.109', { + 'source_tmpl': 'Test-Tester-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FD/FDALY'], + }), + ('File::Slurp::Tiny', '0.003', { + 'source_tmpl': 'File-Slurp-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Capture::Tiny', '0.30', { + 'source_tmpl': 'Capture-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('List::MoreUtils', '0.413', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Package::DeprecationManager', '0.14', { + 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('TAP::Harness::Env', '3.35', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], + }), + ('Sub::Name', '0.05', { + 'source_tmpl': 'Sub-Name-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], + }), + ('Eval::Closure', '0.13', { + 'source_tmpl': 'Eval-Closure-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('Devel::GlobalDestruction', '0.13', { + 'source_tmpl': 'Devel-GlobalDestruction-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('boolean', '0.45', { + 'source_tmpl': 'boolean-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Moose', '2.1405', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Params::Validate', '1.20', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + # For uoa00001, Zendesk #9076 + ('Math::CDF', '0.1', { + 'source_tmpl': 'Math-CDF-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CA/CALLAHAN/'], + }), + ('DateTime::Locale', '0.46', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Singleton', '1.4', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('DateTime::TimeZone', '1.92', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Warnings', '0.021', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], + }), + ('Exporter::Tiny', '0.042', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOBYINK/'], + }), + ('List::AllUtils', '0.09', { + 'source_tmpl': 'List-AllUtils-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime', '1.20', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('URI', '1.69', { + 'source_tmpl': 'URI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Request', '6.06', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('AnyEvent', '7.09', { + 'source_tmpl': 'AnyEvent-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], + }), + ('Devel::CheckCompiler', '0.06', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY/'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO/'], + }), + ('LWP', '6.13', { + 'source_tmpl': 'libwww-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('aliased', '0.31', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mock::Quick', '1.108', { + 'source_tmpl': 'Mock-Quick-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('Mouse', '2.4.2', { + 'source_tmpl': 'Mouse-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::LibXML', '2.0121', { + 'source_tmpl': 'XML-LibXML-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Config::General', '2.58', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('Test::Simple', '0.98', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSCHWERN'], + }), + ('Font::TTF', '1.05', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('B::LintSubs', '0.06', { + 'source_tmpl': 'B-LintSubs-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Test::Most', '0.34', { + 'source_tmpl': 'Test-Most-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Readonly', '1.04', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO/'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('Want', '0.26', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], + }), + ('DBD::SQLite', '1.48', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('forks', '0.36', { + 'source_tmpl': 'forks-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RY/RYBSKEJ/'], + }), + ('File::Which', '1.09', { + 'source_tmpl': 'File-Which-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Perl::Unsafe::Signals', '0.02', { + 'source_tmpl': 'Perl-Unsafe-Signals-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RG/RGARCIA/'], + }), + ('Bit::Vector', '7.4', { + 'source_tmpl': 'Bit-Vector-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/ST/STBEY/'], + }), + ('Parse::RecDescent', '1.967009', { + 'source_tmpl': 'Parse-RecDescent-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JT/JTBRAUN/'], + }), + ('Inline', '0.80', { + 'source_tmpl': 'Inline-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('File::ShareDir::Install', '0.10', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GW/GWYN/'], + }), + ('Inline::C', '0.76', { + 'source_tmpl': 'Inline-C-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('IO::All', '0.85', { + 'source_tmpl': 'IO-All-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('IO::Prompt', '0.997002', { + 'source_tmpl': 'IO-Prompt-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCONWAY/'], + }), + ('Getopt::Long', '2.47', { + 'source_tmpl': 'Getopt-Long-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JV/JV/'], + }), + ('AppConfig', '1.66', { + 'source_tmpl': 'AppConfig-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('Archive::Extract', '0.76', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Archive::Tar', '2.08', { + 'source_tmpl': 'Archive-Tar-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Archive::Zip', '1.57', { + 'source_tmpl': 'Archive-Zip-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PH/PHRED/'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR/'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + # BioPerl bundle was here + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('Class::DBI', '3.0.17', { + 'source_tmpl': 'Class-DBI-v%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Class::Inspector', '1.28', { + 'source_tmpl': 'Class-Inspector-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER/'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/'], + }), + ('CPANPLUS', '0.9154', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD/'], + }), + ('Data::UUID', '1.220', { + 'source_tmpl': 'Data-UUID-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR/'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ/'], + }), + ('SQL::Statement', '1.407', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Module::Pluggable', '5.1', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SI/SIMONW/'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Expect', '1.21', { + 'source_tmpl': 'Expect-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RG/RGIERSIG/'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('FreezeThaw', '0.5001', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules/'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSOUTH/'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SJ/SJCARBON/'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DS/DSKOLL/'], + }), + ('IO::Socket::SSL', '2.016', { + 'source_tmpl': 'IO-Socket-SSL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SU/SULLR/'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA/'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Mail::Util', '2.14', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MARKOV/'], + }), + ('MIME::Types', '2.11', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MARKOV/'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Net::HTTP', '6.06', { + 'source_tmpl': 'Net-HTTP-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Net::SMTP::SSL', '1.01', { + 'source_tmpl': 'Net-SMTP-SSL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CW/CWEST/'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJENNESS/'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RM/RMBARKER/'], + }), + ('Pod::POM', '0.29', { + 'source_tmpl': 'Pod-POM-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AN/ANDREWF/'], + }), + ('Shell', '0.72', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FE/FERREIRA/'], + }), + ('Statistics::Descriptive', '3.0609', { + 'source_tmpl': 'Statistics-Descriptive-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MP/MPIOTR/'], + }), + ('Text::Soundex', '3.04', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Time::Piece', '1.30', { + 'source_tmpl': 'Time-Piece-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('version', '0.9912', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JP/JPEACOCK/'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::Simple', '2.20', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::XPath', '1.13', { + 'source_tmpl': 'XML-XPath-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSERGEANT/'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERRIN/'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD/'], + }), + ('Term::ReadKey', '2.32', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JS/JSTOWE/'], + 'patches': ['TermReadKey-2.32.patch'], + }), + ('Moo', '2.000001', { + 'source_tmpl': 'Moo-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('strictures', '2.000001', { + 'source_tmpl': 'strictures-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('File::Find::Rule::Perl', '1.13', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Version', '1.002004', { + 'source_tmpl': 'Test-Version-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/X/XE/XENO/'], + }), + ('Test::Harness', '3.35', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Import::Into', '1.002004', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-%(version)s.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'], + }), + ('Algorithm::Munkres', '0.08', { + 'source_tmpl': 'Algorithm-Munkres-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TP/TPEDERSE/'], + }), + ('Graph', '0.96', { + 'source_tmpl': 'Graph-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JH/JHI/'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDO/'], + }), + ('CGI', '4.21', { + 'source_tmpl': 'CGI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEEJO/'], + }), + ('Bio::Phylo', '0.58', { + 'source_tmpl': 'Bio-Phylo-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RV/RVOSA/'], + }), + ('SVG', '2.64', { + 'source_tmpl': 'SVG-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SZ/SZABGAB/'], + }), + ('XML::DOM', '1.44', { + 'source_tmpl': 'XML-DOM-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/'], + }), + ('XML::DOM::XPath', '0.14', { + 'source_tmpl': 'XML-DOM-XPath-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'], + }), + ('XML::Parser::PerlSAX', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD/'], + }), + ('XML::Parser', '2.44', { + 'source_tmpl': 'XML-Parser-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('XML::Twig', '3.49', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'], + }), + ('XML::Writer', '0.625', { + 'source_tmpl': 'XML-Writer-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JO/JOSEPHW/'], + }), + ('XML::DOM', '1.44', { + 'source_tmpl': 'XML-DOM-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/'], + }), + ('Spreadsheet::ParseExcel', '0.65', { + 'source_tmpl': 'Spreadsheet-ParseExcel-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOUGW/'], + }), + ('XML::DOM::XPath', '0.14', { + 'source_tmpl': 'XML-DOM-XPath-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'], + }), + ('Convert::Binary::C', '0.77', { + 'source_tmpl': 'Convert-Binary-C-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHX/'], + }), + ('Sys::SigAction.pm', '0.21', { + 'source_tmpl': 'Sys-SigAction-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LB/LBAXTER/'], + }), + ('Acme::Damn', '0.06', { + 'source_tmpl': 'Acme-Damn-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IB/IBB/'], + }), + ('Set::IntervalTree', '0.10', { + 'source_tmpl': 'Set-IntervalTree-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BE/BENBOOTH/'], + }), + ('HTML::TableExtract', '2.13', { + 'source_tmpl': 'HTML-TableExtract-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSISK/'], + }), + ('Bio::Perl', '1.6.924', { + 'source_tmpl': 'BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.0-foss-2015a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a2edfbd0bd6ab837c1fdfc8b90d8653db024a112 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.0-foss-2015a.eb @@ -0,0 +1,898 @@ +name = 'Perl' +version = '5.22.0' +use_perl_threads = False + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +dependencies = [ + ('DB', '6.0.30'), # for DB_File module + ('SQLite', '3.8.9'), # for DBD::SQLite module + ('expat', '2.1.0'), # for XML::Parser I think + ('libxml2', '2.9.2'), # for XML::LibXML +] + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +maxparallel = 1 + +exts_list = [ + ('Module::Build', '0.4210', { # std module but recent BioPerl needs a recent version for some reason + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::MakeMaker', '7.04', { + 'source_tmpl': 'ExtUtils-MakeMaker-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('local::lib', '2.000011', { + 'source_tmpl': 'local-lib-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('DB_File', '1.835', { + 'source_tmpl': 'DB_File-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PM/PMQS/'], + }), + ('DBI', '1.633', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Tree::DAG_Node', '1.26', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Try::Tiny', '0.22', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Devel::StackTrace', '2.00', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Exception::Class', '1.39', { + 'source_tmpl': 'Exception-Class-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Deep', '0.117', { + 'source_tmpl': 'Test-Deep-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Algorithm::Diff', '1.15', { + 'source_tmpl': 'Algorithm-Diff-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/N/NE/NEDKONZ/'], + }), + ('Text::Diff', '1.41', { + 'source_tmpl': 'Text-Diff-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Differences', '0.61', { + 'source_tmpl': 'Test-Differences-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Exception', '0.32', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Test::Requires', '0.08', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Test::Tester', '0.109', { + 'source_tmpl': 'Test-Tester-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FD/FDALY'], + }), + ('File::Slurp::Tiny', '0.003', { + 'source_tmpl': 'File-Slurp-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Capture::Tiny', '0.30', { + 'source_tmpl': 'Capture-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('List::MoreUtils', '0.413', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Package::DeprecationManager', '0.14', { + 'source_tmpl': 'Package-DeprecationManager-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('TAP::Harness::Env', '3.35', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], + }), + ('Sub::Name', '0.05', { + 'source_tmpl': 'Sub-Name-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], + }), + ('Eval::Closure', '0.13', { + 'source_tmpl': 'Eval-Closure-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('Devel::GlobalDestruction', '0.13', { + 'source_tmpl': 'Devel-GlobalDestruction-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('boolean', '0.45', { + 'source_tmpl': 'boolean-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Moose', '2.1405', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Params::Validate', '1.20', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + # For uoa00001, Zendesk #9076 + ('Math::CDF', '0.1', { + 'source_tmpl': 'Math-CDF-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CA/CALLAHAN/'], + }), + ('DateTime::Locale', '0.46', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Singleton', '1.4', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('DateTime::TimeZone', '1.92', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Warnings', '0.021', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], + }), + ('Exporter::Tiny', '0.042', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOBYINK/'], + }), + ('List::AllUtils', '0.09', { + 'source_tmpl': 'List-AllUtils-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime', '1.20', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('URI', '1.69', { + 'source_tmpl': 'URI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Request', '6.06', { + 'source_tmpl': 'HTTP-Message-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('AnyEvent', '7.09', { + 'source_tmpl': 'AnyEvent-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], + }), + ('Devel::CheckCompiler', '0.06', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY/'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO/'], + }), + ('LWP', '6.13', { + 'source_tmpl': 'libwww-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('aliased', '0.31', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mock::Quick', '1.108', { + 'source_tmpl': 'Mock-Quick-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('Mouse', '2.4.2', { + 'source_tmpl': 'Mouse-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::LibXML', '2.0121', { + 'source_tmpl': 'XML-LibXML-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Config::General', '2.58', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('Test::Simple', '0.98', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSCHWERN'], + }), + ('Font::TTF', '1.05', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('B::LintSubs', '0.06', { + 'source_tmpl': 'B-LintSubs-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Test::Most', '0.34', { + 'source_tmpl': 'Test-Most-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Readonly', '1.04', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO/'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('Want', '0.26', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], + }), + ('DBD::SQLite', '1.48', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('forks', '0.36', { + 'source_tmpl': 'forks-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RY/RYBSKEJ/'], + }), + ('File::Which', '1.09', { + 'source_tmpl': 'File-Which-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Perl::Unsafe::Signals', '0.02', { + 'source_tmpl': 'Perl-Unsafe-Signals-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RG/RGARCIA/'], + }), + ('Bit::Vector', '7.4', { + 'source_tmpl': 'Bit-Vector-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/ST/STBEY/'], + }), + ('Parse::RecDescent', '1.967009', { + 'source_tmpl': 'Parse-RecDescent-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JT/JTBRAUN/'], + }), + ('Inline', '0.80', { + 'source_tmpl': 'Inline-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('File::ShareDir::Install', '0.10', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GW/GWYN/'], + }), + ('Inline::C', '0.76', { + 'source_tmpl': 'Inline-C-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('IO::All', '0.85', { + 'source_tmpl': 'IO-All-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('IO::Prompt', '0.997002', { + 'source_tmpl': 'IO-Prompt-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCONWAY/'], + }), + ('Getopt::Long', '2.47', { + 'source_tmpl': 'Getopt-Long-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JV/JV/'], + }), + ('AppConfig', '1.66', { + 'source_tmpl': 'AppConfig-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('Archive::Extract', '0.76', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Archive::Tar', '2.08', { + 'source_tmpl': 'Archive-Tar-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Archive::Zip', '1.57', { + 'source_tmpl': 'Archive-Zip-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PH/PHRED/'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR/'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + # BioPerl bundle was here + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('Class::DBI', '3.0.17', { + 'source_tmpl': 'Class-DBI-v%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Class::Inspector', '1.28', { + 'source_tmpl': 'Class-Inspector-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER/'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/'], + }), + ('CPANPLUS', '0.9154', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD/'], + }), + ('Data::UUID', '1.220', { + 'source_tmpl': 'Data-UUID-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR/'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ/'], + }), + ('SQL::Statement', '1.407', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Module::Pluggable', '5.1', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SI/SIMONW/'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Expect', '1.21', { + 'source_tmpl': 'Expect-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RG/RGIERSIG/'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('FreezeThaw', '0.5001', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules/'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSOUTH/'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SJ/SJCARBON/'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DS/DSKOLL/'], + }), + ('IO::Socket::SSL', '2.016', { + 'source_tmpl': 'IO-Socket-SSL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SU/SULLR/'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA/'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Mail::Util', '2.14', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MARKOV/'], + }), + ('MIME::Types', '2.11', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MARKOV/'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Net::HTTP', '6.06', { + 'source_tmpl': 'Net-HTTP-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Net::SMTP::SSL', '1.01', { + 'source_tmpl': 'Net-SMTP-SSL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CW/CWEST/'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJENNESS/'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RM/RMBARKER/'], + }), + ('Pod::POM', '0.29', { + 'source_tmpl': 'Pod-POM-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AN/ANDREWF/'], + }), + ('Shell', '0.72', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FE/FERREIRA/'], + }), + ('Statistics::Descriptive', '3.0609', { + 'source_tmpl': 'Statistics-Descriptive-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MP/MPIOTR/'], + }), + ('Text::Soundex', '3.04', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Time::Piece', '1.30', { + 'source_tmpl': 'Time-Piece-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('version', '0.9912', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JP/JPEACOCK/'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::Simple', '2.20', { + 'source_tmpl': 'XML-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::XPath', '1.13', { + 'source_tmpl': 'XML-XPath-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSERGEANT/'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERRIN/'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD/'], + }), + ('Term::ReadKey', '2.32', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JS/JSTOWE/'], + 'patches': ['TermReadKey-2.32.patch'], + }), + ('Moo', '2.000001', { + 'source_tmpl': 'Moo-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('strictures', '2.000001', { + 'source_tmpl': 'strictures-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('File::Find::Rule::Perl', '1.13', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Version', '1.002004', { + 'source_tmpl': 'Test-Version-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/X/XE/XENO/'], + }), + ('Test::Harness', '3.35', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Import::Into', '1.002004', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-%(version)s.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'], + }), + ('Algorithm::Munkres', '0.08', { + 'source_tmpl': 'Algorithm-Munkres-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TP/TPEDERSE/'], + }), + ('Graph', '0.96', { + 'source_tmpl': 'Graph-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JH/JHI/'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDO/'], + }), + ('CGI', '4.21', { + 'source_tmpl': 'CGI-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEEJO/'], + }), + ('Bio::Phylo', '0.58', { + 'source_tmpl': 'Bio-Phylo-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RV/RVOSA/'], + }), + ('SVG', '2.64', { + 'source_tmpl': 'SVG-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SZ/SZABGAB/'], + }), + ('XML::DOM', '1.44', { + 'source_tmpl': 'XML-DOM-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/'], + }), + ('XML::DOM::XPath', '0.14', { + 'source_tmpl': 'XML-DOM-XPath-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'], + }), + ('XML::Parser::PerlSAX', '0.08', { + 'source_tmpl': 'libxml-perl-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD/'], + }), + ('XML::Parser', '2.44', { + 'source_tmpl': 'XML-Parser-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('XML::Twig', '3.49', { + 'source_tmpl': 'XML-Twig-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'], + }), + ('XML::Writer', '0.625', { + 'source_tmpl': 'XML-Writer-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JO/JOSEPHW/'], + }), + ('XML::DOM', '1.44', { + 'source_tmpl': 'XML-DOM-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/'], + }), + ('Spreadsheet::ParseExcel', '0.65', { + 'source_tmpl': 'Spreadsheet-ParseExcel-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOUGW/'], + }), + ('XML::DOM::XPath', '0.14', { + 'source_tmpl': 'XML-DOM-XPath-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'], + }), + ('Convert::Binary::C', '0.77', { + 'source_tmpl': 'Convert-Binary-C-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHX/'], + }), + ('Sys::SigAction.pm', '0.21', { + 'source_tmpl': 'Sys-SigAction-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LB/LBAXTER/'], + }), + ('Acme::Damn', '0.06', { + 'source_tmpl': 'Acme-Damn-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IB/IBB/'], + }), + ('Set::IntervalTree', '0.10', { + 'source_tmpl': 'Set-IntervalTree-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BE/BENBOOTH/'], + }), + ('HTML::TableExtract', '2.13', { + 'source_tmpl': 'HTML-TableExtract-%(version)s.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSISK/'], + }), + ('Bio::Perl', '1.6.924', { + 'source_tmpl': 'BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016a.eb index f1ad7853f0e743374853288575fc38aa26e70314..da492710dcdb8818e6a11a3bb242e7acd0aaeff4 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016a.eb @@ -880,6 +880,14 @@ exts_list = [ 'source_tmpl': 'MailTools-2.14.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016b.eb index 873d35ef8aa5207d8157d9f3ff2ca3e83a5b8cf3..40d7dcb64dd3d9d3455b1e8e1328b854a82d19d8 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016b.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-foss-2016b.eb @@ -880,6 +880,14 @@ exts_list = [ 'source_tmpl': 'MailTools-2.14.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a.eb index b58ce50af426ae2650a5977fdb0d12e2307813ca..84b07d8df709234e784d8742c11fb5677eaa1f8c 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a.eb @@ -881,6 +881,14 @@ exts_list = [ 'source_tmpl': 'MailTools-2.14.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.2-goolf-1.7.20.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.2-goolf-1.7.20.eb index 2a1f8007bbec605028b0f577892ad45cddebf6da..f1a40e88ccf092c826e02152da75154c07b97ab2 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.22.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.2-goolf-1.7.20.eb @@ -879,6 +879,14 @@ exts_list = [ 'source_tmpl': 'MailTools-2.18.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.2-intel-2016a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.2-intel-2016a.eb index c8a4524d45495f7604bbbaab39da8b8cd3f3653d..972556dd95c04fb4d6c782cd8b2c34833523442b 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.22.2-intel-2016a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.2-intel-2016a.eb @@ -880,6 +880,14 @@ exts_list = [ 'source_tmpl': 'MailTools-2.18.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCC-5.4.0-2.26.eb index f39c5f51b0562769daefe05394a9924dded01e27..ff9b04399d89d0ff10194a1fcf88630e6cddf6ba 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCC-5.4.0-2.26.eb @@ -887,6 +887,14 @@ exts_list = [ 'source_tmpl': 'PDF-API2-2.031.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb index 47164262e373a4e62a462e2ca4e6e57c32b3b9fe..62d5ecc186ad8880322976b35e6289cdfd935fc1 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-GCCcore-4.9.3.eb @@ -889,6 +889,14 @@ exts_list = [ 'source_tmpl': 'PDF-API2-2.031.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-foss-2016b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-foss-2016b.eb index 3f4c7638c71f34260cfc8c07ae616d6c286e7fd9..41e1a649441776256ea4e1a5777126fb380fa41a 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-foss-2016b.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-foss-2016b.eb @@ -887,6 +887,14 @@ exts_list = [ 'source_tmpl': 'PDF-API2-2.031.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-intel-2016b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-intel-2016b.eb index 8fd86e040fb3f2e2bf27068bd03babe7b9439485..da2611b723b955445c6af85790eee48db53e9b5b 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.0-intel-2016b.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.0-intel-2016b.eb @@ -888,6 +888,14 @@ exts_list = [ 'source_tmpl': 'PDF-API2-2.031.tar.gz', 'source_urls': ['http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/'], }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..82a8efae483ae548f10b6a515c01d4e2ff9693f4 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-foss-2017a.eb @@ -0,0 +1,1130 @@ +name = 'Perl' +version = '5.24.1' + +homepage = 'https://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e6c185c9b09bdb3f1b13f678999050c639859a7ef39c8cad418448075f5918af'] + +# !! order of extensions is important !! +# extensions updated on April 4th 2017 +exts_list = [ + ('Config::General', '2.63', { + 'source_tmpl': 'Config-General-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c'], + }), + ('ExtUtils::Helpers', '0.026', { + 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416'], + }), + ('Test::Harness', '3.38', { + 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['af906dd279217a6db5064a058658f2b1d5aa1d307ed6f142d96ac4d339754c01'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb'], + }), + ('Text::Glob', '0.11', { + 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287'], + }), + ('Regexp::Common', '2016060801', { + 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': ['fc2fc178facf0292974d6511bad677dd038fe60d7ac118e3b83a1ca9e98a8403'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': ['423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': ['b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0'], + }), + ('Test::Warnings', '0.026', { + 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08'], + }), + ('File::ShareDir::Install', '0.11', { + 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8'], + }), + ('DateTime::Locale', '1.16', { + 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['dfaf4c42149c0622e80721773b8d7229d7785280503585895c9fe9f51e076cfe'], + }), + ('DateTime::TimeZone', '2.11', { + 'source_tmpl': 'DateTime-TimeZone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['a7c0b2581d2bf6d5cc535364099a67678a9f6ee608e5042dff9ef9c4c577ea6b'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + 'checksums': ['2768a391d50ab94b95cefe540b9232d7046c13ee86d01859e04c044903222eb5'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['c15f1a12f0c2130c9efff3c2e1afe5887b08ccd033bd132186d1e7d5087fd66d'], + }), + ('Module::Build', '0.4222', { + 'source_tmpl': 'Module-Build-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['e74b45d9a74736472b74830599cec0d1123f992760f9cd97104f94bee800b160'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + 'checksums': ['4c44fe0ea255a9fd00741ee545063f6692d2a28e7ef2fbaad1b24a92803362a4'], + }), + ('Try::Tiny', '0.28', { + 'source_tmpl': 'Try-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['f1d166be8aa19942c4504c9111dade7aacb981bc5b3a2a5c5f6019646db8c146'], + }), + ('Params::Validate', '1.26', { + 'source_tmpl': 'Params-Validate-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['821ac3cfa9715b94f60926faf316b9ff722785594b37036202371ad2303a72ed'], + }), + ('List::MoreUtils', '0.418', { + 'source_tmpl': 'List-MoreUtils-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['365651edea4e0c806576e4dcfc3dfb98bb4cbb343bc5c3e04cdc7b5b71ed4988'], + }), + ('Exporter::Tiny', '0.044', { + 'source_tmpl': 'Exporter-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], + 'checksums': ['eda868cc2da094b685ceace4245b83de11f439feb98e0ec8246cfbb9109c88ab'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + 'checksums': ['38220d04f02e3a803193c2575a1644cce0b95ad4b95c19eb932b94e2647ef678'], + }), + ('DateTime', '1.42', { + 'source_tmpl': 'DateTime-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['efa4badf07365d1b03ee5527fc79baaf7d8b449bf7baad13599f04177232416e'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['9a48433f86e08ce18e03526e2982de52162eb909d19735460f07eefcaf463ea6'], + }), + ('Readonly', '2.05', { + 'source_tmpl': 'Readonly-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], + 'checksums': ['4b23542491af010d44a5c7c861244738acc74ababae6b8838d354dfb19462b5e'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + 'checksums': ['9d4de21612253a1d3252ff7657d7e832dcf3cc2a748a8c84f73de618a3a38239'], + }), + ('Tree::DAG_Node', '1.29', { + 'source_tmpl': 'Tree-DAG_Node-%(version)s.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + 'checksums': ['2d04eb011aa06cee633c367d1f322b8d937020fde5d5393fad6a26c93725c4a8'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['e7e1cf36026f1ef96d8233e18a3fb39e1eafe9109edc639ecf25b20651cd76be'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + 'checksums': ['3c5e08329106f9cee3ab444b81331c5935f83084a151d88505e7a465da540f41'], + }), + ('DBI', '1.636', { + 'source_tmpl': 'DBI-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + 'checksums': ['8f7ddce97c04b4b7a000e65e5d05f679c964d62c8b02c94c1a7d815bb2dd676c'], + }), + ('DBD::SQLite', '1.54', { + 'source_tmpl': 'DBD-SQLite-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + 'checksums': ['3929a6dbd8d71630f0cb57f85dcef9588cd7ac4c9fa12db79df77b9d3a4d7269'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], + 'checksums': ['11a815fc45fdf0efabb1822ab77faad8b9eea162572c5f0940c8ed7d56e6b8b8'], + }), + ('Archive::Extract', '0.80', { + 'source_tmpl': 'Archive-Extract-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['25cbc2d5626c14d39a0b5e4fe8383941e085c9a7e0aa873d86e81b6e709025f4'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], + 'checksums': ['445535b3dfab88140c7a0d2776b1e78f254dc7e9c81072d5a01afc95a5db499a'], + }), + ('Shell', '0.73', { + 'source_tmpl': 'Shell-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + 'checksums': ['f7dbebf65261ed0e5abd0f57052b64d665a1a830bab4c8bbc220f235bd39caf5'], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['36350e12f58871437ba03391f80a506e447e3c6630cc37d0625bc25ff1c7b4d2'], + }), + ('Test::Simple', '1.302078', { + 'source_tmpl': 'Test-Simple-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': ['ab47f3a980ad9aedb78a731719a0487f02a7bc30c17b65457e6dfc3a89a04c15'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + 'checksums': ['a3dc1526f3dde72d3c64ea00007b86ce608cdcd93567cf6e6e42dc10fdc4511d'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + 'checksums': ['8c67fd6608c3c4e74f7324f1404a856c331dbf48d9deda6aaa8296ea41bf199d'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['176fa02771f542a4efb1dbc2a4c928e8f4391bf4078473bd6040d8f11adb0ec1'], + }), + ('XML::SAX::Base', '1.09', { + 'source_tmpl': 'XML-SAX-Base-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': ['66cb355ba4ef47c10ca738bd35999723644386ac853abbeb5132841f5e8a2ad0'], + }), + ('XML::NamespaceSupport', '1.12', { + 'source_tmpl': 'XML-NamespaceSupport-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + 'checksums': ['47e995859f8dd0413aa3f22d350c4a62da652e854267aa0586ae544ae2bae5ef'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + 'checksums': ['32b04b8e36b6cc4cfc486de2d859d87af5386dd930f2383c49347050d6f5ad84'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + 'checksums': ['efb8b58b6981efc6c9c4b4a3b550728f8c179f3c8d57c05724873011c08de65e'], + }), + ('Test::Exception', '0.43', { + 'source_tmpl': 'Test-Exception-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + 'checksums': ['156b13f07764f766d8b45a43728f2439af81a3512625438deab783b7883eb533'], + }), + ('Text::Table', '1.132', { + 'source_tmpl': 'Text-Table-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': ['cd601742ee526a9c54b9fe0a4c051e1b09a23b75e2c97de14305218116aba516'], + }), + ('MIME::Types', '2.13', { + 'source_tmpl': 'MIME-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': ['99c3376357bbe22cc8b6c78f560aa18d81621287695cd629008a6c4e66b77bf8'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + 'checksums': ['15762fa4e43b41302cff261c7ad75aacdc874f416981f206d783f20acd023adb'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + 'checksums': ['0b1617af218dfab911ba0fbd72210529a246efe140332da77fe3e03d11000117'], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + 'checksums': ['0865836a1bcbc34d4a0ee34b5ccc14d7b511f1fd300bf390f002dac349539843'], + }), + ('HTML::Parser', '3.72', { + 'source_tmpl': 'HTML-Parser-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['ec28c7e1d9e67c45eca197077f7cdc41ead1bb4c538c7f02a3296a4bb92f608b'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + 'checksums': ['c36fd2b68d48c2e17417bf2873c78820f3ae02460fdf5976b8eeab887d59e16c'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 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['61e567a7679588887b7b86d427bc476ea6d77fffe7e0d17d640f89007d98ef0f'], + }), + ('HTTP::Cookies', '6.03', { + 'source_tmpl': 'HTTP-Cookies-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/O/OA/OALDERS'], + 'checksums': ['05051f2761832317554b0be4b74012c35fd278f6af2c9d218f055e0de891457c'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + 'checksums': ['1bbfbf7d1d4871e5a83bab2137e22d089078206815190eb1d5c1260a3499456f'], + }), + ('Test::Exception::LessClever', '0.009', { + 'source_tmpl': 'Test-Exception-LessClever-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['3b2731a44956a11f74b46b3ecf0734fab651e1c0bcf120f8b407aa1b4d43ac34'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 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'checksums': ['43fd867742701a3f9fcc7bd59838ab72c6490c0ebaf66901068ec6997514adc2'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': ['85b94f3513093ec0a25b91f9f2571918519ae6f2b7a1e8546f8f78d09a877143'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['e8b9941da0f9f0c9c01068401a5e81341f0e3707d1c754f8e11f42a7e629e333'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], + 'checksums': ['6614fa7518f094f853741b63c73f3627168c5d3aca89b1d02b1016dc32854e09'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + 'checksums': ['9fb0534bb7ef6ca1f6cc1dc3f29750d6d424394d14c40efdc77832fad3cebde8'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + 'checksums': ['b2296fdcf9addc8e8fc39e15eb2c3d81145f6355258438bc783b12b02c41cb81'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + 'checksums': ['bd9e77a3fb662b40b43b18d3280cd352edf9fad8d94283e518181cc1ce9f0567'], + }), + ('DateTime::Tiny', '1.06', { + 'source_tmpl': 'DateTime-Tiny-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + 'checksums': ['bd725df481d7223ee787e154c116098b08a129f55e0763194b07ebea3dda33ec'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['247f0d88e55076fd3f6c7bf3fd527989d62fcc1ef9bde9bf2ee11c280adcaeab'], + }), + ('Text::Format', '0.60', { + 'source_tmpl': 'Text-Format-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + 'checksums': ['664f313570604624ff9e1fc9b26b6d04e06897b3e4eac83089fc0905a692a2b8'], + }), + ('Devel::CheckCompiler', '0.07', { + 'source_tmpl': 'Devel-CheckCompiler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + 'checksums': ['768b7697b4b8d4d372c7507b65e9dd26aa4223f7100183bbb4d3af46d43869b5'], + }), + ('Log::Handler', '0.88', { + 'source_tmpl': 'Log-Handler-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + 'checksums': ['45bf540ab2138ed3ff93afc205b0516dc75755b86acdcc5e75c41347833c293d'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], + 'checksums': ['85e2f805bfc81cd738c294316b27a515397036f397a0ff1c6c8d754c38530306'], + }), + ('Devel::StackTrace', '2.02', { + 'source_tmpl': 'Devel-StackTrace-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': ['cbbd96db0ecf194ed140198090eaea0e327d9a378a4aa15f9a34b3138a91931f'], + }), + ('Term::ReadKey', '2.14', { + 'source_tmpl': 'TermReadKey-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KJ/KJALB'], + 'checksums': ['6009158cd9889f8c00da78af99847ace5052f1ca04fa30eb3411fdc26d54c9a8'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + 'checksums': ['11b7549b13ec5d87cc695dd4c777cd02983dd5fe9866012877fb530f48b3dfd0'], + }), + ('Moose', '2.2004', { + 'source_tmpl': 'Moose-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['e4c881bf8d8fd5821aea8a8c7c57ed850c2373d4800949798a55c06ca9e8d2b0'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + 'checksums': ['f27733e8d89cf2ab621284c2584da90ab0cb743ba2295ee739fe51bf92561e37'], + }), + ('Font::TTF', '1.06', { + 'source_tmpl': 'Font-TTF-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': ['4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565'], + }), + ('File::Find::Rule', '0.34', { + 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe'], + }), + ('SQL::Statement', '1.410', { + 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['7367fcda896367c96d98416cad423c9f98adb7e04b793c5c7deb3052a1213182'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': ['ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': ['06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c'], + }), + ('Data::OptList', '0.110', { + 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3'], + }), + ('CPANPLUS', '0.9164', { + 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['3fcd8c7bb1973df484236fc3d59ed17c8a35057f56546ba44bfc780b97fec0a8'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': ['a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d'], + }), + ('Text::Soundex', '3.05', { + 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed'], + }), + ('Lingua::EN::PluralToSingular', '0.19', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': ['c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e'], + }), + ('Want', '0.29', { + 'source_tmpl': 'Want-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': ['b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7'], + }), + ('Cwd::Guard', '0.05', { + 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': ['7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': ['c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7'], + }), + ('Mail::Util', '2.18', { + 'source_tmpl': 'MailTools-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': ['dfee9e770257371112f20d978e637759e81bc4f19e97b083585c71ecab37b527'], + }), + ('Text::Template', '1.47', { + 'source_tmpl': 'Text-Template-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': ['50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc'], + }), + ('PDF::API2', '2.031', { + 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': ['6ea5d38f99dfb1e8acf57c9c7579659b3eee84944295a135f90e607e0a3f43e9'], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': ['bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1'], + }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + 'checksums': ['1f01cf2dc666a2ba3bf5219ec9e2290143e5e569747431412c8423916a9846c5'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + 'checksums': ['6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb index 7186e3ec910c15c8d54767f0c565d90050a81b88..e827a0f69acf69976b930f53fbfcfdbc78d96aa1 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.24.1-intel-2017a.eb @@ -9,6 +9,7 @@ toolchainopts = {'pic': True} source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['e6c185c9b09bdb3f1b13f678999050c639859a7ef39c8cad418448075f5918af'] # !! order of extensions is important !! # extensions updated on April 4th 2017 @@ -16,879 +17,1113 @@ exts_list = [ ('Config::General', '2.63', { 'source_tmpl': 'Config-General-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + 'checksums': ['0a9bf977b8aabe76343e88095d2296c8a422410fd2a05a1901f2b20e2e1f6fad'], }), ('File::Listing', '6.04', { 'source_tmpl': 'File-Listing-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + 'checksums': ['1e0050fcd6789a2179ec0db282bf1e90fb92be35d1171588bd9c47d52d959cf5'], }), ('ExtUtils::InstallPaths', '0.011', { 'source_tmpl': 'ExtUtils-InstallPaths-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7609fa048cdcf1451cad5b1d7d494f30e3d5bad0672d15404f1ea60e1df0067c'], }), ('ExtUtils::Helpers', '0.026', { 'source_tmpl': 'ExtUtils-Helpers-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['de901b6790a4557cf4ec908149e035783b125bf115eb9640feb1bc1c24c33416'], }), ('Test::Harness', '3.38', { 'source_tmpl': 'Test-Harness-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['af906dd279217a6db5064a058658f2b1d5aa1d307ed6f142d96ac4d339754c01'], }), ('ExtUtils::Config', '0.008', { 'source_tmpl': 'ExtUtils-Config-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['ae5104f634650dce8a79b7ed13fb59d67a39c213a6776cfdaa3ee749e62f1a8c'], }), ('Module::Build::Tiny', '0.039', { 'source_tmpl': 'Module-Build-Tiny-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + 'checksums': ['7d580ff6ace0cbe555bf36b86dc8ea232581530cbeaaea09bccb57b55797f11c'], }), ('aliased', '0.34', { 'source_tmpl': 'aliased-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['c350524507cd827fab864e5d4c2cc350b1babaa12fa95aec0ca00843fcc7deeb'], }), ('Text::Glob', '0.11', { 'source_tmpl': 'Text-Glob-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['069ccd49d3f0a2dedb115f4bdc9fbac07a83592840953d1fcdfc39eb9d305287'], }), ('Regexp::Common', '2016060801', { 'source_tmpl': 'Regexp-Common-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + 'checksums': ['fc2fc178facf0292974d6511bad677dd038fe60d7ac118e3b83a1ca9e98a8403'], }), ('GO::Utils', '0.15', { 'source_tmpl': 'go-perl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + 'checksums': ['423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12'], }), ('Module::Pluggable', '5.2', { 'source_tmpl': 'Module-Pluggable-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + 'checksums': ['b3f2ad45e4fd10b3fb90d912d78d8b795ab295480db56dc64e86b9fa75c5a6df'], }), ('Test::Fatal', '0.014', { 'source_tmpl': 'Test-Fatal-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['bcdcef5c7b2790a187ebca810b0a08221a63256062cfab3c3b98685d91d1cbb0'], }), ('Test::Warnings', '0.026', { 'source_tmpl': 'Test-Warnings-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['ae2b68b1b5616704598ce07f5118efe42dc4605834453b7b2be14e26f9cc9a08'], }), ('File::ShareDir::Install', '0.11', { 'source_tmpl': 'File-ShareDir-Install-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + 'checksums': ['32bf8772e9fea60866074b27ff31ab5bc3f88972d61915e84cbbb98455e00cc8'], }), ('DateTime::Locale', '1.16', { 'source_tmpl': 'DateTime-Locale-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + 'checksums': 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['https://cpan.metacpan.org/authors/id/B/BH/BHALLISSY'], + 'checksums': ['4b697d444259759ea02d2c442c9bffe5ffe14c9214084a01f743693a944cc293'], }), ('IPC::Run3', '0.048', { 'source_tmpl': 'IPC-Run3-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['3d81c3cc1b5cff69cca9361e2c6e38df0352251ae7b41e2ff3febc850e463565'], }), ('File::Find::Rule', '0.34', { 'source_tmpl': 'File-Find-Rule-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + 'checksums': ['7e6f16cc33eb1f29ff25bee51d513f4b8a84947bbfa18edb2d3cc40a2d64cafe'], }), ('SQL::Statement', '1.410', { 'source_tmpl': 'SQL-Statement-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + 'checksums': ['7367fcda896367c96d98416cad423c9f98adb7e04b793c5c7deb3052a1213182'], }), ('File::Slurp', '9999.19', { 'source_tmpl': 'File-Slurp-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], + 'checksums': ['ce29ebe995097ebd6e9bc03284714cdfa0c46dc94f6b14a56980747ea3253643'], }), ('Package::Stash', '0.37', { 'source_tmpl': 'Package-Stash-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + 'checksums': ['06ab05388f9130cd377c0e1d3e3bafeed6ef6a1e22104571a9e1d7bfac787b2c'], }), ('Data::OptList', '0.110', { 'source_tmpl': 'Data-OptList-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['366117cb2966473f2559f2f4575ff6ae69e84c69a0f30a0773e1b51a457ef5c3'], }), ('CPANPLUS', '0.9164', { 'source_tmpl': 'CPANPLUS-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + 'checksums': ['3fcd8c7bb1973df484236fc3d59ed17c8a35057f56546ba44bfc780b97fec0a8'], }), ('IO::Tty', '1.12', { 'source_tmpl': 'IO-Tty-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + 'checksums': ['a2ef8770d3309178203f8c8ac25e623e63cf76e97830fd3be280ade1a555290d'], }), ('Text::Soundex', '3.05', { 'source_tmpl': 'Text-Soundex-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + 'checksums': ['f6dd55b4280b25dea978221839864382560074e1d6933395faee2510c2db60ed'], }), ('Lingua::EN::PluralToSingular', '0.19', { 'source_tmpl': 'Lingua-EN-PluralToSingular-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], + 'checksums': ['c71b6c1aec01aae9c42aef0d9f147a437e91a7cc5cea6e4abbc35440638f299e'], }), ('Want', '0.29', { 'source_tmpl': 'Want-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + 'checksums': ['b4e4740b8d4cb783591273c636bd68304892e28d89e88abf9273b1de17f552f7'], }), ('Cwd::Guard', '0.05', { 'source_tmpl': 'Cwd-Guard-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + 'checksums': ['7afc7ca2b9502e440241938ad97a3e7ebd550180ebd6142e1db394186b268e77'], }), ('Bundle::BioPerl', '2.1.9', { 'source_tmpl': 'Bundle-BioPerl-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + 'checksums': ['c343ba97f49d86e7fb14aef4cfe3124992e2a5c3168e53a54606dd611d73e5c7'], }), ('Mail::Util', '2.18', { 'source_tmpl': 'MailTools-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + 'checksums': ['dfee9e770257371112f20d978e637759e81bc4f19e97b083585c71ecab37b527'], }), ('Text::Template', '1.47', { 'source_tmpl': 'Text-Template-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT'], + 'checksums': ['50d742c74482478aa01008d468290fcfbc0b9a1219cfe1284076f1f31f0be8fc'], }), ('PDF::API2', '2.031', { 'source_tmpl': 'PDF-API2-%(version)s.tar.gz', 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SS/SSIMMS'], + 'checksums': ['6ea5d38f99dfb1e8acf57c9c7579659b3eee84944295a135f90e607e0a3f43e9'], + }), + ('Devel::CheckLib', '1.11', { + 'source_tmpl': 'Devel-CheckLib-%(version)s.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MATTN'], + 'checksums': ['bd6d1c187e80be6de1f0d37add441ba8f14950c7bc1f54e764770ed484b232c1'], + }), + ('SVG', '2.77', { + 'source_tmpl': 'SVG-2.77.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/'], + 'checksums': ['1f01cf2dc666a2ba3bf5219ec9e2290143e5e569747431412c8423916a9846c5'], + }), + ('Statistics::Basic', '1.6611', { + 'source_tmpl': 'Statistics-Basic-1.6611.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/J/JE/JETTERO/'], + 'checksums': ['6855ce5615fd3e1af4cfc451a9bf44ff29a3140b4e7130034f1f0af2511a94fb'], }), ] diff --git a/easybuild/easyconfigs/p/Perl4-CoreLibs/Perl4-CoreLibs-0.003-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/p/Perl4-CoreLibs/Perl4-CoreLibs-0.003-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..5590b7d7de8a08f13c5c6a910444299137ffa63f --- /dev/null +++ b/easybuild/easyconfigs/p/Perl4-CoreLibs/Perl4-CoreLibs-0.003-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'Perl4-CoreLibs' +version = '0.003' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'https://metacpan.org/pod/Perl4::CoreLibs' +description = "Libraries historically supplied with Perl 4" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://search.cpan.org/CPAN/authors/id/Z/ZE/ZEFRAM/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Perl', '5.24.1'), +] + +options = {'modulename': 'Perl4::CoreLibs'} + +sanity_check_paths = { + 'files': ['lib/perl5/site_perl/%(perlver)s/getopts.pl'], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb index 2ee0e32243a25aa516db98deefcbb9187c555eee..dfae3001aaeccac91eb13f564550761c9132e186 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb index 3c4e95c7ce3f04734542fc26a6ea1ca5098d7850..f0201e1312a3f945628435daabba077f61e7d439 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Pillow/Pillow-4.1.1-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/p/Pillow/Pillow-4.1.1-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..7e73af7e4a980531a6913123f2b0d3039a20cc63 --- /dev/null +++ b/easybuild/easyconfigs/p/Pillow/Pillow-4.1.1-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'Pillow' +version = '4.1.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://pillow.readthedocs.org/' +description = """Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. + PIL is the Python Imaging Library by Fredrik Lundh and Contributors.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '3.6.1'), + ('libjpeg-turbo', '1.5.1'), + ('libpng', '1.6.29'), + ('zlib', '1.2.11'), + ('LibTIFF', '4.0.8'), + ('freetype', '2.7.1', '-libpng-1.6.29'), +] + +options = {'modulename': 'PIL'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb index bca12c0034c692c32615cf608fe8627e57d02486..a1bd0d68a7fc0dc23fbacaba73e0ed196f79db20 100644 --- a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb index 9f45199e957c63f63c862b78cad8290ab3ad82c8..7c9fc74d13b9db6cd422bd24b33de8fb869601bb 100644 --- a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb +++ b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5b8-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-foss-2017a.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b4c1e2fdf5ac2602b9b1fd593121a0b03181bc5d --- /dev/null +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-foss-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'MakeCp' + +name = 'Platanus' +version = '1.2.4' + +homepage = 'http://platanus.bio.titech.ac.jp/' +description = """PLATform for Assembling NUcleotide Sequences""" + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'openmp': True, 'cstd': 'c++0x'} + +buildopts = 'CXXFLAGS="$CXXFLAGS -Dnullptr=0 -lm -fpermissive"' + +source_urls = ['http://platanus.bio.titech.ac.jp/?ddownload=150'] +sources = ['%(name)s_v%(version)s.tar.gz'] + +files_to_copy = [(["platanus"], 'bin'), "README", "LICENSE"] + +sanity_check_paths = { + 'files': ["bin/platanus"], + 'dirs': [""], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb index fb465f5c8927a0420b246d8a4a347c5203f5ccc3..f30e2624cc0edcae97f5455633cf507564b74776 100644 --- a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.4-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb index c8749eca4a0f3d66d4cb82e69f1ece1c9c6f9ddf..105ca94d208cf0355699fe9506e48f62b0c00b58 100644 --- a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Mazur # Research IT # Biozentrum, University of Basel diff --git a/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb index 30ff748dc8c05e6ff5995466fd16db636884eb56..008ed299aa6a6de26fdc241860e7118dd58dba25 100644 --- a/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/p/PyOpenGL/PyOpenGL-3.1.1a1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyOpenGL/PyOpenGL-3.1.1a1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..e76b799546be85c564263066939dab673b1b63fd --- /dev/null +++ b/easybuild/easyconfigs/p/PyOpenGL/PyOpenGL-3.1.1a1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,42 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: +# +# Notes:: +## + +easyblock = 'PythonPackage' + +name = 'PyOpenGL' +version = '3.1.1a1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://pyopengl.sourceforge.net' +description = """PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('bzip2', '1.0.6'), +] + +dependencies = [ + ('Python', '2.7.12'), + ('Mesa', '12.0.2'), +] + +options = {'modulename': 'OpenGL'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 51aeabb7ca96d2743c6cc615a8acba65086fdb72..36bbf7c9f62548979626915edbac9322154a7c2d 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb index 328b12d5a91891a90cd324e86b820ef0a1008611..af29a1b6dd6fe78079871aaf7a20e8aefd28eec3 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb index 992e13df88a1c506383f269ae1aa70a8d0f6ed40..0bee14ad365fd862c10b292b24cb4e8a3d8b51c7 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-foss-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb index 0d39a830f0aac18ec09a311bfe93c2703a75f48f..a32f5973035df781a00acf023bb757c6f1f5b123 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb index f40c0f4c4be6530467713181180ce7e4d5cb2d3e..aa50b0c60dd22d3e291c964d5372d69cd039357e 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb index a3811f7d21ef685f2b6860c9781a55a77a991900..afceaf85fcccabcba3d7e1ada0271e8f1da897d3 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb index b495a5ba45473287484c34d62a3f261d26f19105..a3cbafa68a8a0cc09fd45b3352e3ff9781ad0880 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.4-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb index f8e50daad20abe90266cdc11ea5c5efbd83ab26d..52a8b8d0db038d2a0dc4eeaef63e6688e79627cb 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb index 8afd4b1225f1441bb300b374163016696942402b..95b12ce511083a09009d45b110e9ccf53d10cd6e 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..12cb80c0d580c4d4cbb1e02fb01d56e3586e6335 --- /dev/null +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.12-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'ConfigureMakePythonPackage' + +name = 'PyQt' +version = '4.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' +description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-%(version)s'] +sources = ['PyQt4_gpl_x11-%(version)s.tar.gz'] + +dependencies = [ + ('Python', '2.7.13'), + ('SIP', '4.19.2', versionsuffix), + ('Qt', '4.8.7'), +] + +configopts = "configure-ng.py --confirm-license" +configopts += " --destdir=%(installdir)s/lib/python%(pyshortver)s/site-packages " +configopts += " --sipdir=%(installdir)s/share/sip/PyQt%(version_major)s" + +options = {'modulename': '%(name)s%(version_major)s'} + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s%(version_major)s'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyQt5/PyQt5-5.8.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/PyQt5/PyQt5-5.8.2-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..60a9bfec1e899f796cd254e4861a426e55972c83 --- /dev/null +++ b/easybuild/easyconfigs/p/PyQt5/PyQt5-5.8.2-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMakePythonPackage' + +name = 'PyQt5' +version = '5.8.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' +description = """PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt5/PyQt-%(version)s'] +sources = ['%(name)s_gpl-%(version)s.tar.gz'] + +dependencies = [ + ('Python', '2.7.13'), + ('SIP', '4.19.2', versionsuffix), + ('Qt5', '5.8.0'), +] + +configopts = "configure.py --confirm-license" +configopts += " --destdir=%(installdir)s/lib/python%(pyshortver)s/site-packages " +configopts += " --no-sip-files" + +options = {'modulename': '%(name)s'} + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb4c534d26fbc7c03692088d70adef7a2570a643 --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,38 @@ +easyblock = 'PythonPackage' + +name = 'PyYAML' +version = '3.12' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'https://pypi.python.org/pypi/PyYAML/' + +description = """ + PyYAML is a YAML parser and emitter for the Python programming language. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab'] + +builddependencies = [ + ('binutils', '2.28'), + ('Python', pyver, pysubver), +] + +dependencies = [ + ('libyaml', '0.1.6'), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb index 624f14ed188ea0a58a793381768c7c292f1db148..ef54c7fce273ca891a7c3df34ee06061ed903bdc 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.10.0-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..76d42a604f8879611150b048851e245590870f3d --- /dev/null +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.8.4-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# 0.9.1.4: +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'PythonPackage' + +name = 'Pysam' +version = '0.8.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pysam-developers/pysam' +description = """Pysam is a python module for reading and manipulating Samfiles. + It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" + +toolchain = {'name': 'intel', 'version': '2016b'} + +source_urls = ['https://github.com/pysam-developers/pysam/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['4acbfe4b15b1db2417094ea64836d416a66e368e6c0e3031b597509f21e8c021'] + +dependencies = [ + ('Python', '2.7.12'), + ('ncurses', '6.0'), + ('zlib', '1.2.8'), + ('cURL', '7.52.1'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb index f0889a65b2bc239ad7bc4a87956f2eac9746a6d6..829a039d16cd50405868dbdbb5971efaa6f391a4 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.0-goolf-1.7.20-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -20,8 +20,8 @@ parallel = 1 dependencies = [ ('Python', '2.7.11'), ('ncurses', '5.9'), - ('zlib', '1.2.8'), - ('cURL', '7.44.0'), + ('zlib', '1.2.8'), + ('cURL', '7.44.0'), ] # this is a bundle of Python packages diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb index 3deabf6808af1926cd63354940e49ba4ae0a1613..93e0a90956229c125ae4a1559ee8e059e6e42f5c 100644 --- a/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.9.1.4-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -23,8 +23,8 @@ parallel = 1 dependencies = [ ('Python', '2.7.12'), ('ncurses', '6.0'), - ('zlib', '1.2.8'), - ('cURL', '7.49.1'), + ('zlib', '1.2.8'), + ('cURL', '7.49.1'), ] # this is a bundle of Python packages diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2015.11.eb b/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2015.11.eb index 8a60745ce6c7ca8690b017cb63ef329bf583d509..e436c82dbe1249b5a139d839c9d16bc445316d1b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2015.11.eb @@ -27,7 +27,7 @@ dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), # this requires a full X11 stack + ('Tk', '8.6.4', '-no-X11'), # this requires a full X11 stack ('GMP', '6.1.0'), ] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2016.03.eb b/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2016.03.eb index f9d52e68ec42ce87b0f0f2d6d69328889dec9803..acbb85722ba2e000caba5d4a59029efccd90d770 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2016.03.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.11-CrayGNU-2016.03.eb @@ -27,7 +27,7 @@ dependencies = [ ('libreadline', '6.3'), ('ncurses', '6.0'), ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), # this requires a full X11 stack + ('Tk', '8.6.4', '-no-X11'), # this requires a full X11 stack ('GMP', '6.1.0'), ] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.12-iccifort-2016.3.210-GCC-5.4.0-2.26-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.12-iccifort-2016.3.210-GCC-5.4.0-2.26-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..78379d49239955fdf6d3b4c198d206a2d7f5f876 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.12-iccifort-2016.3.210-GCC-5.4.0-2.26-bare.eb @@ -0,0 +1,33 @@ +name = 'Python' +version = '2.7.12' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '6.0'), + ('SQLite', '3.13.0'), + ('Tk', '8.6.5'), # this requires a full X11 stack + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2h'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.12-iomkl-2017a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.12-iomkl-2017a.eb index eb4f43f9dda3df0e581bbbc6693e1b775f9c54fe..bfb67d268a246055162b63d6739f5a2b77b6bba2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.12-iomkl-2017a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.12-iomkl-2017a.eb @@ -128,6 +128,9 @@ exts_list = [ ('virtualenv', '15.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..0860032fc3e38acbac5b0199c402ba0e0009e8ae --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-GCCcore-6.4.0-bare.eb @@ -0,0 +1,56 @@ +name = 'Python' +version = '2.7.13' +versionsuffix = '-bare' + +homepage = 'http://python.org/' + +description = """ + Python is a programming language that lets you work more quickly and + integrate your systems more effectively. + +Note: This module is meant to provide a builddependency for other Python + modules while using EasyBuild's --minimaltoolchain option. Modules + built with it will require the full Python later +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] +checksums = ['a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('libreadline', '7.0'), + ('ncurses', '6.0'), + ('SQLite', '3.19.3'), + ('zlib', '1.2.11'), +] + +osdependencies = [ + # rely upon distribution for timely security updates + ('openssl-devel', 'libssl-dev', 'libopenssl-devel'), +] + +# We hide this by default since users should not use it in production, +# high-performance Python should be delivered at compiler level with +# a default extension set +# hidden = True + +# bare installation: only known module deps for GCCcore tools included +exts_list = [] + +# Until such time that EasyBuild accepts 'rpath' as a toolchainopt... +# add RPATH so this can be used as a builddependency for "bare" PythonPackages +preconfigopts = """ + sed -e\ + 's:$(LINKCC) $(LDFLAGS) $(LINKFORSHARED):$(LINKCC) $(LDFLAGS) $(LINKFORSHARED) -Wl,-rpath=%(installdir)s/lib:'\ + -i.eb Makefile.pre.in +""" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-foss-2017a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-foss-2017a.eb index 5abe3e3e7db0eab47a6a45f63d53f6c135c60491..836a809f6b9e4d5310bc1f072abc7830fb1e102e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.13-foss-2017a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-foss-2017a.eb @@ -130,6 +130,12 @@ exts_list = [ ('virtualenv', '15.1.0', { 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.13-intel-2017a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.13-intel-2017a.eb index 099f1ae1b247f445ab491653b526b49d8ebbd28b..0bc26ff7b9f4b1610a3b5d505a0c360223003b59 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.13-intel-2017a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.13-intel-2017a.eb @@ -130,6 +130,12 @@ exts_list = [ ('virtualenv', '15.1.0', { 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.5.2-GCC-5.4.0-2.26-bare.eb b/easybuild/easyconfigs/p/Python/Python-3.5.2-GCC-5.4.0-2.26-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..1e9fd31ecc0bed9877223ce5d24df6f56c7bdbb7 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.5.2-GCC-5.4.0-2.26-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '3.5.2' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '6.0'), + ('SQLite', '3.13.0'), + ('Tk', '8.6.5'), # this requires a full X11 stack + ('GMP', '6.1.1'), + ('libffi', '3.2.1'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2h'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.5.2-iccifort-2016.3.210-GCC-5.4.0-2.26-bare.eb b/easybuild/easyconfigs/p/Python/Python-3.5.2-iccifort-2016.3.210-GCC-5.4.0-2.26-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..7c126a429472d2735ee2cc27d477d490e7e2bdc0 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.5.2-iccifort-2016.3.210-GCC-5.4.0-2.26-bare.eb @@ -0,0 +1,32 @@ +name = 'Python' +version = '3.5.2' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '6.0'), + ('SQLite', '3.13.0'), + ('Tk', '8.6.5'), # this requires a full X11 stack + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2h'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb b/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb index b226f52d5171ed4f2a0e3c0013ff535d1a306158..9157c902c696153311b14d80a845fdb52cad8fed 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.6.1-intel-2017a.eb @@ -122,6 +122,12 @@ exts_list = [ ('virtualenv', '15.1.0', { 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], }), + ('docopt', '0.6.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/docopt'], + }), + ('joblib', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/j/joblib'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/p11-kit/p11-kit-0.23.2-GCCcore-5.4.0.eb b/easybuild/easyconfigs/p/p11-kit/p11-kit-0.23.2-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0e997ce499eb1697469b17a76da40f63a621cdb9 --- /dev/null +++ b/easybuild/easyconfigs/p/p11-kit/p11-kit-0.23.2-GCCcore-5.4.0.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'p11-kit' +version = '0.23.2' + +homepage = 'http://p11-glue.freedesktop.org/p11-kit.html' +description = """Provides a way to load and enumerate PKCS#11 modules. + Provides a standard configuration setup for installing + PKCS#11 modules in such a way that they're discoverable. + Also solves problems with coordinating the use of PKCS#11 + by different components or libraries living in the same process.""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = ['http://p11-glue.freedesktop.org/releases/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('libtasn1', '4.12'), + ('libffi', '3.2.1'), +] + +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ['bin/p11-kit', 'bin/trust'] + + ['lib/libp11-kit.%s' % SHLIB_EXT], + 'dirs': ['include/p11-kit-1/p11-kit'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb index f8e2358b4aa780f53637547de88b7d42f3e50a97..4538b1fdca6007f29ebc4e8d48e1a3f522972395 100644 --- a/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2014 Cyprus Institute # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 3810b2de94c9dd4f1361d166a8079763bb57a2ea..3fc50c73101decbd82bee8f7090f0740ff58dae5 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index fc4fbe41bc3641206aa40cf86846a23be2f68a8d..62379f0f87937e8211e4f57700667546034070ef 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/p/pbbam/pbbam-20170508-intel-2017a.eb b/easybuild/easyconfigs/p/pbbam/pbbam-20170508-intel-2017a.eb index 5e218a32253330cc4eff4efe76d35549eca8e566..a724ce7cbeb54f12e818132ecda0ad007217104b 100644 --- a/easybuild/easyconfigs/p/pbbam/pbbam-20170508-intel-2017a.eb +++ b/easybuild/easyconfigs/p/pbbam/pbbam-20170508-intel-2017a.eb @@ -16,7 +16,7 @@ source_urls = [ 'https://github.com/google/googletest/archive/', ] sources = [ - ('%s.tar.gz' % commit, "tar xfvz %s --strip-components=1"), # pbbam + {'filename': '%s.tar.gz' % commit, 'extract_cmd': "tar xfvz %s --strip-components=1"}, # pbbam 'release-%s.tar.gz' % gtest_ver, # googletest ] diff --git a/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb b/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb index cc1d205d402f6f9feb304f256ac9647a2b0a1cd3..2b1fc2a612a206b450da550317f2d4cfb36eccaf 100644 --- a/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb +++ b/easybuild/easyconfigs/p/perl-app-cpanminus/perl-app-cpanminus-1.7039.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/p/picard/picard-2.1.0.eb b/easybuild/easyconfigs/p/picard/picard-2.1.0.eb index 702287f8f6a5d7792834b49e76080ed2ba6c3be3..9cc6b0c56aa3f443eee4b25f5d5dd4ff810a0e82 100644 --- a/easybuild/easyconfigs/p/picard/picard-2.1.0.eb +++ b/easybuild/easyconfigs/p/picard/picard-2.1.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb new file mode 100755 index 0000000000000000000000000000000000000000..ab38eef7a5f1e73af157a2e6ecf419194fc4caff --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.10.1-Java-1.8.0_131.eb @@ -0,0 +1,45 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +# 2.10.1: +# Adam Huffman +# The Francis Crick Institute +# +## + +easyblock = 'JAR' + +name = 'picard' +version = '2.10.1' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] +sources = [{ + 'filename': '%(name)s-%(version)s.jar', + 'download_filename': '%(name)s.jar', +}] + +checksums = ['ace0de725f7dbf3a1f621ac146e205b41bc872a0bdc700cf687124740fb60412'] + +postinstallcmds = [' mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar'] + +dependencies = [('Java', '1.8.0_131')] + +sanity_check_paths = { + 'files': ['picard.jar'], + 'dirs': [], +} + +modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/picard/picard-2.2.4-Java-1.8.0_92.eb b/easybuild/easyconfigs/p/picard/picard-2.2.4-Java-1.8.0_92.eb new file mode 100644 index 0000000000000000000000000000000000000000..4af929c18d0f272afee889f1c5a7080241de1e48 --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.2.4-Java-1.8.0_92.eb @@ -0,0 +1,34 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +## + +name = 'picard' +version = '2.2.4' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] +sources = ['%(name)s-tools-%(version)s.zip'] + +java = 'Java' +javaver = '1.8.0_92' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': ['picard.jar'], + 'dirs': [], +} + +modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb new file mode 100755 index 0000000000000000000000000000000000000000..f2d725154484eb282c18e13bc7f3dfb57416e622 --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.6.0-Java-1.8.0_131.eb @@ -0,0 +1,46 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: MIT +# +# 2.6.0: +# Adam Huffman +# The Francis Crick Institute +## + +easyblock = 'JAR' + +name = 'picard' +version = '2.6.0' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] +sources = ['%(name)s.jar'] + +sources = [{ + 'filename': '%(name)s-%(version)s.jar', + 'download_filename': '%(name)s.jar', +}] + +checksums = ['671d9e86e6bf0c28ee007aea55d07e2456ae3a57016491b50aab0fd2fd0e493b'] + +postinstallcmds = [' mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar'] + +dependencies = [('Java', '1.8.0_131')] + +sanity_check_paths = { + 'files': ['picard.jar'], + 'dirs': [], +} + +modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb index b6ccc91bd2510359c93332b87b5bd7384bbe5a4d..513a7c2b795bb870f0ede70aa4e93b8b257ee045 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel @@ -18,7 +18,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://github.com/madler/pigz/archive/'] sources = ['v%(version)s.tar.gz'] -checksums = ['3a41409da23ff093b61e414d602c5650'] +checksums = ['3a41409da23ff093b61e414d602c5650'] # README recommends zlib 1.2.6 or higher dependencies = [('zlib', '1.2.8')] diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb index e3e7f189b133c2886de6ebf4d5a15c56d8d9c3d7..594f9b1a27e58ac4e112e8129846abaee515eff8 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb index a50f50774ee6e71c62e5aa40a1422aa66000ed20..6bf9fd86a2662bb8f67f1739ebbce5a57846bcb1 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..0a2b15f59b83c2d6f322f1d73ec5db322a872f7a --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2016b.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'pigz' +version = '2.3.3' + +homepage = 'http://zlib.net/pigz/' +description = """ pigz, which stands for parallel implementation of gzip, is a fully + functional replacement for gzip that exploits multiple processors and multiple cores + to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib + and pthread libraries. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/madler/pigz/archive/'] +sources = ['v%(version)s.tar.gz'] +checksums = ['fb80e8d31498226c99fe8c8b3d19364d'] + +# Patch Makefile so zlib provided by EasyBuild is picked up +patches = ['pigz-2.3.3_Makefile.patch'] + +# README recommends zlib 1.2.6 or higher +dependencies = [('zlib', '1.2.8')] + +buildopts = ' CC=$CC' + +parallel = 1 + +files_to_copy = [(["pigz", "unpigz"], "bin")] + +sanity_check_paths = { + 'files': ["bin/pigz", "bin/unpigz"], + 'dirs': [""], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f5201cbea55613c34cb53b74ff35153079d2702c --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4-GCCcore-6.4.0.eb @@ -0,0 +1,46 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'pigz' +version = '2.3.4' + +homepage = 'http://zlib.net/pigz/' + +description = """ + pigz, which stands for parallel implementation of gzip, is a fully + functional replacement for gzip that exploits multiple processors and multiple + cores to the hilt when compressing data. pigz was written by Mark Adler, and + uses the zlib and pthread libraries. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://zlib.net/pigz/'] +sources = [SOURCE_TAR_GZ] +checksums = ['6f031fa40bc15b1d80d502ff91f83ba14f4b079e886bfb83221374f7bf5c8f9a'] + +# Patch Makefile so zlib provided by EasyBuild is picked up +patches = ['%(name)s-%(version)s_Makefile.patch'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +parallel = 1 + +files_to_copy = [(["pigz", "unpigz"], "bin")] + +sanity_check_paths = { + 'files': ['bin/pigz', 'bin/unpigz'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch b/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..685a17d8ca72520ca7f45ec3df44317d09bcb55e --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.4_Makefile.patch @@ -0,0 +1,20 @@ +# Patch Makefile so zlib provided by EasyBuild is picked up +# Authors:: Jack Perdue - TAMU HPRC - http://hprc.tamu.edu + +--- Makefile.orig 2017-07-12 22:16:56.931252958 -0500 ++++ Makefile 2017-07-12 22:25:34.472386094 -0500 +@@ -1,12 +1,11 @@ +-CC=cc +-CFLAGS=-O3 -Wall -Wextra ++ZLIB=-L$(EBROOTZLIB)/lib + LDFLAGS= + LIBS=-lm -lpthread -lz + ZOPFLI=zopfli/src/zopfli/ + # use gcc and gmake on Solaris + + pigz: pigz.o yarn.o try.o ${ZOPFLI}deflate.o ${ZOPFLI}blocksplitter.o ${ZOPFLI}tree.o ${ZOPFLI}lz77.o ${ZOPFLI}cache.o ${ZOPFLI}hash.o ${ZOPFLI}util.o ${ZOPFLI}squeeze.o ${ZOPFLI}katajainen.o +- $(CC) $(LDFLAGS) -o pigz $^ $(LIBS) ++ $(CC) $(LDFLAGS) -o pigz $^ $(ZLIB) $(LIBS) + ln -f pigz unpigz + + pigz.o: pigz.c yarn.h try.h ${ZOPFLI}deflate.h ${ZOPFLI}util.h diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9fb260913809f7794c88f20647192d1412e184e8 --- /dev/null +++ b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = "pixman" +version = '0.34.0' + +homepage = 'http://www.pixman.org/' + +description = """ + Pixman is a low-level software library for pixel manipulation, providing + features such as image compositing and trapezoid rasterization. Important + users of pixman are the cairo graphics library and the X server. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_GZ] +checksums = ['21b6b249b51c6800dc9553b65106e1e37d0e25df942c90531d4c3997aa20a88e'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.1-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..11d61b23f736056061025b276e9f926dddfe0b38 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.1-GCCcore-5.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://pkg-config.freedesktop.org/releases/'] + +builddependencies = [ + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.26', '', True), +] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.1-gimkl-2017a.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.1-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b2d6e14f04b81703cd529557478e94ab3844f67b --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.1-gimkl-2017a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://pkg-config.freedesktop.org/releases/'] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c02bedf48d94e7fc1df77367bc427225f8ae670f --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-6.4.0.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29.2' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' + +description = """ + pkg-config is a helper tool used when compiling applications and libraries. + It helps you insert the correct compiler options on the command line so an + application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other + libraries). +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['https://pkg-config.freedesktop.org/releases/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['6fc69c01688c9458a57eb9a1664c9aba372ccda420a02bf4429fe610e7e7d591'] + +builddependencies = [ + ('binutils', '2.28'), +] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ba3ed319cee1474932c63f832c897ae6d988e806 --- /dev/null +++ b/easybuild/easyconfigs/p/plotly/plotly-4.7.1-intel-2017a-R-3.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'Bundle' + +name = 'plotly' +version = '4.7.1' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://cran.r-project.org/web/packages/plotly' +description = """Easily translate 'ggplot2' graphs to an interactive web-based version and/or + create custom web-based visualizations directly from R.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +dependencies = [('R', '3.4.0', '-X11-20170314')] + +exts_defaultclass = 'RPackage' +exts_list = [ + ('htmlwidgets', '0.9', { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', + 'http://cran.r-project.org/src/contrib/', + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', + 'checksums': ['1154b541ccd868e41d3cf0d7f188f7275ec99f61fe2c7de21c8a05edb19b985e'], + }), + (name, version, { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', + 'http://cran.r-project.org/src/contrib/', + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', + 'checksums': ['7cd4b040f9bfd9356a8a2aba59ccf318cae6b5d94ded7463e2e823c10fa74972'], + }), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/prodigal/prodigal-2.6.2-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/p/prodigal/prodigal-2.6.2-GCC-4.9.3-binutils-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..e5b64245b55f09f37d56d973d120e05a94e78787 --- /dev/null +++ b/easybuild/easyconfigs/p/prodigal/prodigal-2.6.2-GCC-4.9.3-binutils-2.25.eb @@ -0,0 +1,39 @@ +## +# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia +# Homepage: https://www.adelaide.edu.au/phoenix/ +# +# Copyright:: adelaide.edu.au/phoenix +# Authors:: Robert Qiao , Exe Escobedo +# License:: GPL-v3.0 +# +# Notes:: +## + +easyblock = 'MakeCp' + +name = 'prodigal' +version = '2.6.2' + +homepage = 'http://prodigal.ornl.gov/' + +description = """Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) + is a microbial (bacterial and archaeal) gene finding program developed + at Oak Ridge National Laboratory and the University of Tennessee.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-binutils-2.25'} + +source_urls = ['https://github.com/hyattpd/Prodigal/archive/'] +sources = ['v%(version)s.tar.gz'] + +files_to_copy = [ + (['prodigal'], 'bin'), + (['*.h'], 'include'), + (['LICENSE'], 'license'), +] + +sanity_check_paths = { + 'files': ['bin/prodigal'], + 'dirs': ['include', 'license'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/pydlpoly/pydlpoly-20150225-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/p/pydlpoly/pydlpoly-20150225-intel-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..9e06a0f8d2f2d2f33b99001ba4b92c5c3c37c226 --- /dev/null +++ b/easybuild/easyconfigs/p/pydlpoly/pydlpoly-20150225-intel-2016b-Python-2.7.12.eb @@ -0,0 +1,39 @@ +easyblock = 'MakeCp' + +name = 'pydlpoly' +version = '20150225' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://cmc.aci.ruhr-uni-bochum.de/cmc/' +description = """Pydlpoly is a molecular dynamics simulation package which is a modified version of DL-POLY with + a Python language interface.""" + +toolchain = {'name': 'intel', 'version': '2016b'} +toolchainopts = {'usempi': True, 'pic': True} + +sources = ['%(name)s_250215.tgz'] +checksums = ['cd84a4b563dd16823e22fe6c450b07fd95036e20e0c6b7fc308afdb347241122'] + +dependencies = [ + ('Python', '2.7.12'), # also provides mpi4py, numpy + ('h5py', '2.7.0', versionsuffix), + ('FFTW', '2.1.5'), +] + +start_dir = 'source' + +parallel = 1 +buildopts = 'FC="$FC" LD="$FC -o" LDFLAGS="$FFLAGS" FFLAGS="-c $FFLAGS" LDLIBS="-ldfftw" F2PY_COMP=intelem' + +files_to_copy = ['doc', 'py', 'scripts', 'so'] + +sanity_check_paths = { + 'files': ['so/_pydlpoly.%s' % SHLIB_EXT], + 'dirs': ['py'], +} +sanity_check_commands = ["python -c 'import pydlpoly'"] + +modextrapaths = {'PYTHONPATH': ['py', 'so']} +modextravars = {'PDLPDIR': '%(installdir)s'} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/pydlpoly/pydlpoly-20150225-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/p/pydlpoly/pydlpoly-20150225-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..89fcff1c23da540940be3bfd019948a32219c2ae --- /dev/null +++ b/easybuild/easyconfigs/p/pydlpoly/pydlpoly-20150225-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,39 @@ +easyblock = 'MakeCp' + +name = 'pydlpoly' +version = '20150225' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://cmc.aci.ruhr-uni-bochum.de/cmc/' +description = """Pydlpoly is a molecular dynamics simulation package which is a modified version of DL-POLY with + a Python language interface.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True, 'pic': True} + +sources = ['%(name)s_250215.tgz'] +checksums = ['cd84a4b563dd16823e22fe6c450b07fd95036e20e0c6b7fc308afdb347241122'] + +dependencies = [ + ('Python', '2.7.13'), # also provides mpi4py, numpy + ('h5py', '2.7.0', versionsuffix), + ('FFTW', '2.1.5'), +] + +start_dir = 'source' + +parallel = 1 +buildopts = 'FC="$FC" LD="$FC -o" LDFLAGS="$FFLAGS" FFLAGS="-c $FFLAGS" LDLIBS="-ldfftw" F2PY_COMP=intelem' + +files_to_copy = ['doc', 'py', 'scripts', 'so'] + +sanity_check_paths = { + 'files': ['so/_pydlpoly.%s' % SHLIB_EXT], + 'dirs': ['py'], +} +sanity_check_commands = ["python -c 'import pydlpoly'"] + +modextrapaths = {'PYTHONPATH': ['py', 'so']} +modextravars = {'PDLPDIR': '%(installdir)s'} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb b/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb index 4b9209b380904fa4a0cb8ef8b53fdf998dfee09c..b1a1d1feb4d080a71f49f8c047a4e1059f5801d0 100644 --- a/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb +++ b/easybuild/easyconfigs/q/QIIME/QIIME-1.9.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9734e3543a41440788e7621b5c191120ea879f54 --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-GCCcore-6.4.0.eb @@ -0,0 +1,45 @@ +easyblock = 'CMakeMake' + +name = 'Qhull' +version = '2015.2' + +homepage = 'http://www.qhull.org' + +description = """ + Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, + halfspace intersection about a point, furthest-site Delaunay triangulation, + and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and + higher dimensions. Qhull implements the Quickhull algorithm for computing the + convex hull. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.qhull.org/download/'] +sources = ['%(namelower)s-%(version_major)s-src-7.%(version_minor)s.0.tgz'] +checksums = ['78b010925c3b577adc3d58278787d7df08f7c8fb02c3490e375eab91bb58a436'] + +patches = [ + 'Qhull-%(version)s-intel-fix.patch', + 'Qhull_pkgconfig.patch', +] + +builddependencies = [ + ('binutils', '2.28'), + ('CMake', '3.8.2'), +] + +sanity_check_paths = { + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, + 'lib/pkgconfig/qhull.pc'], + 'dirs': [], +} + +modextrapaths = { + 'CPATH': ['qhull/include'], +} + +parallel = 1 + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-intel-2017a.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a35971ec3e0849100f1b758273852c619c68bc41 --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2015.2-intel-2017a.eb @@ -0,0 +1,36 @@ +easyblock = 'CMakeMake' + +name = 'Qhull' +version = '2015.2' + +homepage = 'http://www.qhull.org' +description = """ +Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, +furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, +and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['%(namelower)s-%(version_major)s-src-7.%(version_minor)s.0.tgz'] +source_urls = ['http://www.qhull.org/download/'] + +patches = [ + 'Qhull-%(version)s-intel-fix.patch', + 'Qhull_pkgconfig.patch', +] + +builddependencies = [('CMake', '3.8.1')] + +sanity_check_paths = { + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, 'lib/pkgconfig/qhull.pc'], + 'dirs': [], +} + +modextrapaths = { + 'CPATH': ['qhull/include'], +} + +parallel = 1 + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2015a-GLib-2.48.2-Python-2.7.11.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2015a-GLib-2.48.2-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa6c4175a40297135b6c0a10d46e2cd3418ddc0b --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2015a-GLib-2.48.2-Python-2.7.11.eb @@ -0,0 +1,29 @@ +name = 'Qt' +version = '4.8.7' +glib = 'GLib' +glibver = '2.48.2' +glibsuffix = '-%s-%s' % (glib, glibver) +python = 'Python' +pyver = '2.7.11' +pysuffix = '-%s-%s' % (python, pyver) +versionsuffix = '%s%s' % (glibsuffix, pysuffix) + +homepage = 'http://qt.io/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', + 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-%(version)s_phonon-export.patch'] + +dependencies = [ + ('GLib', '2.48.2'), + ('X11', '20160819'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..71fe074ee9fad2e1dd51a8272655df8533b14b31 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-foss-2017a.eb @@ -0,0 +1,33 @@ +name = 'Qt' +version = '4.8.7' + +homepage = 'http://qt.io/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'cstd': 'gnu++98'} + +source_urls = [ + 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', + 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] +checksums = [ + 'e2882295097e47fe089f8ac741a95fef47e0a73a3f3cdf21b56990638f626ea0', # qt-everywhere-opensource-src-4.8.7.tar.gz + '3853c87c33695bfa57e207ffb0d94cb2565aa462eccdf44d2b2804fd44ecbad6', # Qt-4.8.7_phonon-export.patch +] + +patches = ['Qt-%(version)s_phonon-export.patch'] + +builddependencies = [ + ('pkg-config', '0.29.2'), +] + +dependencies = [ + ('GLib', '2.52.0'), + ('libpng', '1.6.29'), + ('X11', '20170314'), + ('libGLU', '9.0.0'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb index 16a64ab3be7a54492c2976a842878d752582ee3d..0a472e9d66fdac35fb9478a7bc8ea937c3f12886 100644 --- a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb index 8514e49d958fc97db7a61be41701a70eea7a11fa..d677851e09184b12443ef527178be7d7571c9ec1 100644 --- a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index e4973548b5d8599d18f6c4bb2e41e7bd60df6181..91fe68d23d98a52b107a7ad412a550f617d8a16f 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/q/qrupdate/qrupdate-1.1.2-intel-2017a.eb b/easybuild/easyconfigs/q/qrupdate/qrupdate-1.1.2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f82f6763a2e3baf044664323c3fe6bba44b4e33 --- /dev/null +++ b/easybuild/easyconfigs/q/qrupdate/qrupdate-1.1.2-intel-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'qrupdate' +version = '1.1.2' + +homepage = 'https://sourceforge.net/projects/qrupdate/' +description = """qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +patches = ['%(name)s-%(version)s_makeconf.patch'] + +buildopts = 'lib' + +files_to_copy = [(['libqrupdate.a'], 'lib')] + +sanity_check_paths = { + 'files': ['lib/libqrupdate.a'], + 'dirs': [], +} + +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index 1e12105e71b928a341e95219c0fa1cea4f9cc966..5c02ce39e5951bf53b771a89a9c76dc62a7ca3cc 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb index 80580237a7e5089cf955fd31c2aff1017e6c6fc1..43f571de80b3ede1cc42d2a00f532ffb17c3755b 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb @@ -37,27 +37,27 @@ exts_filter = ("R -q --no-save", "library(%(ext_name)s)") # CRAN packages on which these Bioconductor packages depend are available in R module on which this depends # !! order of packages is important !! -# packages updated on May 11th 2017 +# packages updated on May 28th 2017 exts_list = [ ('BiocGenerics', '0.22.0', bioconductor_options), ('Biobase', '2.36.2', bioconductor_options), - ('S4Vectors', '0.14.0', bioconductor_options), - ('IRanges', '2.10.0', bioconductor_options), + ('S4Vectors', '0.14.2', bioconductor_options), + ('IRanges', '2.10.2', bioconductor_options), ('GenomeInfoDbData', '0.99.0', bioconductor_options), ('GenomeInfoDb', '1.12.0', bioconductor_options), ('AnnotationDbi', '1.38.0', bioconductor_options), ('zlibbioc', '1.22.0', bioconductor_options), ('XVector', '0.16.0', bioconductor_options), ('Biostrings', '2.44.0', bioconductor_options), - ('GenomicRanges', '1.28.1', bioconductor_options), + ('GenomicRanges', '1.28.3', bioconductor_options), ('BiocParallel', '1.10.1', bioconductor_options), ('Rsamtools', '1.28.0', bioconductor_options), ('lambda.r', '1.1.9', ext_options), ('futile.options', '1.0.0', ext_options), ('futile.logger', '1.4.3', ext_options), - ('DelayedArray', '0.2.2', bioconductor_options), + ('DelayedArray', '0.2.4', bioconductor_options), ('SummarizedExperiment', '1.6.1', bioconductor_options), - ('GenomicAlignments', '1.12.0', bioconductor_options), + ('GenomicAlignments', '1.12.1', bioconductor_options), ('ShortRead', '1.34.0', bioconductor_options), ('graph', '1.54.0', bioconductor_options), ('affyio', '1.46.0', bioconductor_options), @@ -83,7 +83,7 @@ exts_list = [ ('DEGseq', '1.30.0', bioconductor_options), ('hgu133plus2.db', '3.2.3', bioconductor_options), ('illuminaio', '0.18.0', bioconductor_options), - ('rtracklayer', '1.36.0', bioconductor_options), + ('rtracklayer', '1.36.3', bioconductor_options), ('biomaRt', '2.32.0', bioconductor_options), ('GenomicFeatures', '1.28.0', bioconductor_options), ('bumphunter', '1.16.0', bioconductor_options), @@ -97,15 +97,15 @@ exts_list = [ ('annotate', '1.54.0', bioconductor_options), ('GSEABase', '1.38.0', bioconductor_options), ('genefilter', '1.58.1', bioconductor_options), - ('Category', '2.38.0', bioconductor_options), + ('Category', '2.42.0', bioconductor_options), ('GOstats', '2.42.0', bioconductor_options), ('BSgenome', '1.44.0', bioconductor_options), - ('VariantAnnotation', '1.22.0', bioconductor_options), + ('VariantAnnotation', '1.22.1', bioconductor_options), ('interactiveDisplayBase', '1.14.0', bioconductor_options), ('AnnotationHub', '2.8.1', bioconductor_options), ('AnnotationFilter', '1.0.0', bioconductor_options), ('ProtGenerics', '1.8.0', bioconductor_options), - ('ensembldb', '2.0.1', bioconductor_options), + ('ensembldb', '2.0.2', bioconductor_options), ('biovizBase', '1.24.0', bioconductor_options), ('OrganismDbi', '1.18.0', bioconductor_options), ('ggbio', '1.24.0', bioconductor_options), @@ -139,7 +139,7 @@ exts_list = [ ('cummeRbund', '2.18.0', bioconductor_options), ('GenomicFiles', '1.12.0', bioconductor_options), ('derfinderHelper', '1.10.0', bioconductor_options), - ('derfinder', '1.10.3', bioconductor_options), + ('derfinder', '1.10.4', bioconductor_options), ('polyester', '1.12.0', bioconductor_options), ('Rsubread', '1.26.0', bioconductor_options), ('pcaMethods', '1.68.0', bioconductor_options), @@ -157,6 +157,10 @@ exts_list = [ ('RcppParallel', '4.3.20', ext_options), ('dada2', '1.4.0', bioconductor_options), ('LEA', '1.8.1', bioconductor_options), + ('tximport', '1.4.0', bioconductor_options), + ('scater', '1.4.0', bioconductor_options), + ('scran', '1.4.5', bioconductor_options), + ('SC3', '1.4.2', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb index 95846046fcc051f4504e33074a0a1a376f45e9a2..193456e409477dc58f780303b7c78e63dc13e33e 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb @@ -166,7 +166,7 @@ exts_list = [ ('mice', '2.25', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('logistf', '1.21', ext_options), + ('logistf', '1.21', ext_options), ('akima', '0.5-12', ext_options), ('bitops', '1.0-6', ext_options), ('boot', '1.3-17', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb index 1389b272dd97610f9d897163d28214e040eeb527..48a36233ea3b6f60c80329aa394eabd07d23dc57 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016a.eb @@ -166,7 +166,7 @@ exts_list = [ ('mice', '2.25', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('logistf', '1.21', ext_options), + ('logistf', '1.21', ext_options), ('akima', '0.5-12', ext_options), ('bitops', '1.0-6', ext_options), ('boot', '1.3-17', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb index 0acfcbd0b3ca6e2ab295021d15c9a3702729638e..c866f9a169973533623f4d964acb7bb9ab1b0c69 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2016b.eb @@ -166,7 +166,7 @@ exts_list = [ ('mice', '2.25', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('logistf', '1.21', ext_options), + ('logistf', '1.21', ext_options), ('akima', '0.5-12', ext_options), ('bitops', '1.0-6', ext_options), ('boot', '1.3-17', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb index 39a19900bb04cb652dc872fc6352d0d8645efea2..becdf1c5041eff5f561c75dfdcf58d435c2e8c09 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb @@ -176,7 +176,7 @@ exts_list = [ ('mice', '2.25', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('logistf', '1.21', ext_options), + ('logistf', '1.21', ext_options), ('akima', '0.5-12', ext_options), ('bitops', '1.0-6', ext_options), ('boot', '1.3-17', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb index ad907eaa040750b6ed346a9338f3ae05a7e45ece..470ef9623d46adf5022c80442865238802d219e0 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb @@ -166,7 +166,7 @@ exts_list = [ ('mice', '2.25', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('logistf', '1.21', ext_options), + ('logistf', '1.21', ext_options), ('akima', '0.5-12', ext_options), ('bitops', '1.0-6', ext_options), ('boot', '1.3-17', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb b/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb index 3b6ee9a746b8dc2cd3e374c2bbb649a152a4a8d5..512b0289b6107ede76282a2a306c771641609331 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.3-foss-2016b-X11-20160819.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -#Actually use Tcl/Tk +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib" +# actually use Tcl/Tk configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh ' # Enable graphics capabilities for plotting. configopts += " --with-cairo --with-libpng --with-jpeglib --with-libtiff" @@ -507,4 +507,3 @@ exts_list = [ ] moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb index 963e0745721f5aec823bf5f7ee52c9f20f6a334b..262dd0c1219f1220624c467e5ff86d23ab2630b9 100644 --- a/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.3.3-intel-2017a-X11-20170314.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -#Actually use Tcl/Tk +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib" +# actually use Tcl/Tk configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh ' # Enable graphics capabilities for plotting. configopts += " --with-cairo --with-libpng --with-jpeglib --with-libtiff" @@ -508,4 +508,3 @@ exts_list = [ ] moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb index 949ed58bbbf64e90fa88c59527d0fe7fde35a715..1f364643eb0935256e3dabb30ae6e950752aac3c 100644 --- a/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb +++ b/easybuild/easyconfigs/r/R/R-3.4.0-intel-2017a-X11-20170314.eb @@ -12,7 +12,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib" # Actually use Tcl/Tk configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh ' # Enable graphics capabilities for plotting. @@ -44,6 +44,8 @@ dependencies = [ ('PROJ', '4.9.3'), # for rgdal ('GMP', '6.1.2'), # for igraph ('NLopt', '2.4.2'), # for nloptr + ('FFTW', '3.3.6'), # for fftw + ('libsndfile', '1.0.28'), # for seewave # OS dependency should be preferred if the os version is more recent then this version, # it's nice to have an up to date openssl for security reasons # ('OpenSSL', '1.0.2h'), @@ -508,7 +510,48 @@ exts_list = [ ('purrr', '0.2.2', ext_options), ('downloader', '0.4', ext_options), ('imager', '0.40.2', dict(ext_options.items() + [('patches', ['imager-0.40.2_icpc-wd308.patch'])])), + ('pracma', '2.0.4', ext_options), + ('signal', '0.7-6', ext_options), + ('tuneR', '1.3.2', ext_options), + ('pastecs', '1.3-18', ext_options), + ('audio', '0.1-5', ext_options), + ('fftw', '1.0-4', ext_options), + ('seewave', '2.0.5', ext_options), + ('gsw', '1.0-3', ext_options), + ('oce', '0.9-21', ext_options), + ('ineq', '0.2-13', ext_options), + ('soundecology', '1.3.2', ext_options), + ('memuse', '3.0-1', ext_options), + ('pinfsc50', '1.1.0', ext_options), + ('vcfR', '1.5.0', ext_options), + ('glmmML', '1.0.2', ext_options), + ('ucminf', '1.1-4', ext_options), + ('ordinal', '2015.6-28', ext_options), + ('Rtsne', '0.13', dict(ext_options.items() + [('patches', ['Rtsne-0.13_icpc-wd308.patch'])])), + ('cowplot', '0.7.0', ext_options), + ('tsne', '0.1-3', ext_options), + ('pbapply', '1.3-3', ext_options), + ('RcppProgress', '0.3', ext_options), + ('sn', '1.5-0', ext_options), + ('tclust', '1.2-7', ext_options), + ('ranger', '0.8.0', ext_options), + ('hexbin', '1.27.1', ext_options), + ('crosstalk', '1.0.0', ext_options), + ('pryr', '0.1.2', ext_options), + ('moments', '0.14', ext_options), + ('forcats', '0.2.0', ext_options), + ('laeken', '0.4.6', ext_options), + ('VIM', '4.7.0', ext_options), + ('proxy', '0.4-17', ext_options), + ('smoother', '1.1', ext_options), + ('dynamicTreeCut', '1.63-1', ext_options), + ('DT', '0.2', ext_options), + ('beeswarm', '0.2.3', ext_options), + ('vipor', '0.4.5', ext_options), + ('ggbeeswarm', '0.6.0', ext_options), + ('shinydashboard', '0.6.1', ext_options), + ('rrcov', '1.4-3', ext_options), + ('WriteXLS', '4.0.0', ext_options), ] moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch b/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch new file mode 100644 index 0000000000000000000000000000000000000000..6c76f3883e5f4a81b3783a65d8e9217b659aed7f --- /dev/null +++ b/easybuild/easyconfigs/r/R/Rtsne-0.13_icpc-wd308.patch @@ -0,0 +1,22 @@ +add -wd308 compiler option to avoid compiler warning #308 being treated as an error +author: Kenneth Hoste (HPC-UGent) +-- Rtsne.orig/src/Makevars 2017-04-14 17:51:58.000000000 +0200 ++++ Rtsne/src/Makevars 2017-07-07 15:29:41.426358000 +0200 +@@ -25,4 +25,5 @@ + ## done by a number of packages, but recommended only for more advanced users + ## comfortable with autoconf and its related tools. + +- ++# disable Intel C++ compiler (icpc) warning/error #308, to avoid 'member "std::complex::_M_value" is inaccessible' ++PKG_CXXFLAGS = -wd308 +--- Rtsne.orig/MD5 2017-04-14 18:38:37.000000000 +0200 ++++ Rtsne/MD5 2017-07-07 15:29:58.247065000 +0200 +@@ -6,7 +6,7 @@ + 7af8fde3597798501e00bdc337d8f03e *README.md + 42ae2f3c4872e03c5e401d949a86cad9 *inst/CITATION + 065bed604fc3d4be094fea9fbf7f162e *man/Rtsne.Rd +-fcd429500be5e9251157f001145e8a8b *src/Makevars ++5ed55ce6fb49190f62c48ff8ce8705a1 *src/Makevars + e9a378d06e68a325926bf92e779f280e *src/Makevars.win + 5d991038a3c68e7232302c837179c26d *src/RcppExports.cpp + 3740407bdc49d16ee9a7a8d5ee96a327 *src/Rtsne.cpp diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb index d7d22ad5ae512534ec8b26258dc81ed8e4e6e1eb..7f1a2331ac9f6d94752174c72a39dd8f391a5ee7 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb index dd4462802ce5d12126261b35dc1c345caaba54cc..80e5bb60d4959026b20f51714ff96102aa5f34ee 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb index d55bca8237ce5cfcd771f7dcf7b1f7de69e29e5d..7542264fa709f1ac8559dddf4f76eadddb0b7862 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb index 859f2adbb769c0db2637c92807494c16453d13cf..eac6deabdaee5a56a50f86aa19c35253b2d0a9bb 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 1fd62ac72d9368ae136ebbf15e0e471789a27d18..525c7dcda51cdfbdb61cae0f828fd5b701eddb77 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index ff4020095bb22c19115426a6a2120d45717eab67..60eaccfc4721389a72de363401f41a1fd511c58b 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.4-intel-2016b-single.eb b/easybuild/easyconfigs/r/RELION/RELION-1.4-intel-2016b-single.eb index add5ffc72c4a6f87e160e00c8485947eca5a8c20..2998c29cfdd8987d80a2642128e19cb4161e4b8a 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.4-intel-2016b-single.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.4-intel-2016b-single.eb @@ -24,7 +24,7 @@ dependencies = [ ] # RELION expects FLTK to be in external/fltk-1.3.0 and we have to add fltk libraries -configopts = '--enable-mpi --enable-float ' +configopts = '--enable-mpi --enable-float ' configopts += 'LIBS="-lfltk -lXcursor -lXfixes -lXext -lXft -lfontconfig -lXinerama -lpthread -lX11" ' configopts += '&& ln -s $EBROOTFLTK/include external/fltk-1.3.0 ' # users expect the maingui binary to be called relion diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb index 4ff67a0efb6d4f3a1f758a9a13bb34e204f97039..642eea5ef8fb07e70cb9d097ad1b58d5e694717e 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index 2155ac1e7630e81bc4d2f5322ff8eddac08e01b5..83c1690c1c743fdeac7d2057c3c79525eab5c3c6 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index 03f3c66babb1946ee19c480e4023d4c2784d3c83..23460531f8183f531433362fda2b673b2c2202ab 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb index d0bbd7da765642af019f23f747fb780a86329269..2500753cc5916792ec381248d4f4418226b8e16e 100644 --- a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb index d3a31d723c1a6e81544ad1fe513ea86143d5baf4..2d60c20928ebd2da1602cb7a35304959c42ae7b1 100644 --- a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb +++ b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.3-foss-2015b-Python-2.7.10-R-3.2.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb index f122fed527159c2320b52af4ac2083a6bcb0a355..0e7c072381002ef6b2220f3a93a51378a1f3fd47 100644 --- a/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb +++ b/easybuild/easyconfigs/r/RSeQC/RSeQC-2.6.4-foss-2016b-Python-2.7.12-R-3.3.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute @@ -25,7 +25,7 @@ source_urls = [SOURCEFORGE_SOURCE] dependencies = [ ('R', '3.3.1'), ('Python', '2.7.12'), - ('Pysam', '0.9.1.4', basepyversionsuffix), + ('Pysam', '0.9.1.4', basepyversionsuffix), ] runtest = "python setup.py test" diff --git a/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb b/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb index 462568a58d3b25191947132fb3f6dda27970aa92..99b121a0e8d63c5ee42bc671432508e80adebf36 100644 --- a/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb +++ b/easybuild/easyconfigs/r/Reads2snp/Reads2snp-2.0.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/r/RepastHPC/RepastHPC-2.2.0-foss-2016a.eb b/easybuild/easyconfigs/r/RepastHPC/RepastHPC-2.2.0-foss-2016a.eb index fc07069bfffcd51840368ac627945f039af9f067..1ed10f0d18e54247ff75a3233e56e557a317d399 100644 --- a/easybuild/easyconfigs/r/RepastHPC/RepastHPC-2.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/r/RepastHPC/RepastHPC-2.2.0-foss-2016a.eb @@ -23,7 +23,7 @@ dependencies = [ configopts = '--with-boost=$EBROOTBOOST --with-netcdf=$EBROOTNETCDFMINCPLUSPLUS' sanity_check_paths = { - 'files': ['lib/librelogo-%%(version)s.%s' % SHLIB_EXT, 'lib/librepast_hpc-%%(version)s.%s' % SHLIB_EXT ], + 'files': ['lib/librelogo-%%(version)s.%s' % SHLIB_EXT, 'lib/librepast_hpc-%%(version)s.%s' % SHLIB_EXT], 'dirs': ['bin/rumor', 'bin/zombie', 'include', 'lib'], } diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.3.4.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.3.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..3149eef3ad16aaf53bd55ae5c74adff4698fe47d --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.3.4.eb @@ -0,0 +1,58 @@ +name = 'Ruby' +version = '2.3.4' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +ext_options = { + 'source_urls': ['http://rubygems.org/downloads/'], + 'source_tmpl': '%(name)s-%(version)s.gem', +} + +exts_list = [ + ('ffi', '1.9.18', ext_options), + ('childprocess', '0.7.0', ext_options), + ('json', '2.1.0', ext_options), + ('cabin', '0.9.0', ext_options), + ('backports', '3.8.0', ext_options), + ('arr-pm', '0.0.10', ext_options), + ('clamp', '1.1.2', ext_options), + ('multipart-post', '2.0.0', ext_options), + ('faraday', '0.12.1', ext_options), + ('faraday_middleware', '0.11.0.1', ext_options), + ('highline', '1.7.8', ext_options), + ('net-http-pipeline', '1.0.1', ext_options), + ('connection_pool', '2.2.1', ext_options), + ('net-http-persistent', '2.9.4', ext_options), + ('multi_json', '1.12.1', ext_options), + ('public_suffix', '2.0.5', ext_options), + ('addressable', '2.4.0', ext_options), + ('gh', '0.15.1', ext_options), + ('launchy', '2.4.3', ext_options), + ('ethon', '0.10.1', ext_options), + ('typhoeus', '1.1.2', ext_options), + ('websocket', '1.2.4', ext_options), + ('pusher-client', '0.6.2', ext_options), + ('diff-lcs', '1.3', ext_options), + ('rspec-support', '3.6.0', ext_options), + ('rspec-mocks', '3.6.0', ext_options), + ('rspec-expectations', '3.6.0', ext_options), + ('rspec-core', '3.6.0', ext_options), + ('rspec', '3.6.0', ext_options), + ('rack', '2.0.3', ext_options), + ('rack-protection', '2.0.0', ext_options), + ('tilt', '2.0.7', ext_options), + ('mustermann', '1.0.0', ext_options), + ('sinatra', '2.0.0', ext_options), + ('rack-test', '0.6.3', ext_options), + ('bundler', '1.15.1', ext_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/Rust/Rust-1.18.0-foss-2017a.eb b/easybuild/easyconfigs/r/Rust/Rust-1.18.0-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..22f0bbe7986b28acc3f9eedf22efb5099052da58 --- /dev/null +++ b/easybuild/easyconfigs/r/Rust/Rust-1.18.0-foss-2017a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Rust' +version = '1.18.0' + +homepage = 'https://www.rust-lang.org' +description = """Rust is a systems programming language that runs blazingly fast, prevents segfaults, + and guarantees thread safety.""" + +toolchain = {'name': 'foss', 'version': '2017a'} + +source_urls = ['https://static.rust-lang.org/dist/'] +sources = ['rustc-%(version)s-src.tar.gz'] + +builddependencies = [('CMake', '3.8.2')] + +sanity_check_paths = { + 'files': ['bin/rustc', 'bin/rustdoc'], + 'dirs': ['share/doc', 'share/man', 'lib/rustlib'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb index 764e0a56544a32f545de656718e3f9c1f8246dd5..a2dd96fcb99b3e4c41da24c4bc5fee1b9ef0a55c 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb index 67667d2f43bcc42bb5b7511d4a971fc3b8905e1f..0e88376e1b07b3fbc9ee63ab29c15ecdf10affac 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb index 515ad4d74a56684ec38f4cc1faa6f368b1942a3c..de39a6a664a657efd6637038e73bb0502eeb5b38 100644 --- a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb index ebe8bfa5d5bff0f3fc1abbdda886124d3b5f9ec0..cbe0f89b4804daf1e841c8221349182aec24c87f 100644 --- a/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/rainbow/rainbow-2.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..2809740b9c10f289730104dd0c62badfb835612d --- /dev/null +++ b/easybuild/easyconfigs/r/rjags/rjags-4-6-intel-2017a-R-3.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'RPackage' + +name = 'rjags' +version = '4-6' +versionsuffix = '-R-%(rver)s' + +homepage = 'http://cran.r-project.org/web/packages/rjags' +description = """The rjags package is an interface to the JAGS library.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/rjags/', +] +sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['cf24bb1e7c8445bafb49097089ad33e5bd5d8efbccf16fc7e32ad230f05f89ad'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('JAGS', '4.2.0'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['rjags'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/r/rootpy/rootpy-0.8.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/r/rootpy/rootpy-0.8.0-foss-2016a-Python-2.7.11.eb index efecae95e82d8260c65c1986d29df209d6518378..21a990b69beb590f32235bee1611580889ae413b 100644 --- a/easybuild/easyconfigs/r/rootpy/rootpy-0.8.0-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/r/rootpy/rootpy-0.8.0-foss-2016a-Python-2.7.11.eb @@ -20,7 +20,7 @@ sources = ['%(version)s.tar.gz'] dependencies = [ ('Python', '2.7.11'), - ('ROOT','v6.08.02','-Python-%(pyver)s'), + ('ROOT', 'v6.08.02', '-Python-%(pyver)s'), ('matplotlib', '1.5.1', versionsuffix + '-freetype-2.6.3') ] diff --git a/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb b/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb index 5b2154b1464bc23344220edc8de9c09fccc8b7c2..7752f26f31e2380f0b5cdce4d5c1a32e1121a898 100644 --- a/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb +++ b/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Forschungszentrum Juelich GmbH # Authors:: Damian Alvarez diff --git a/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb b/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb index 3c539b01d11ab2539b815f19f0ba8f1c010138cb..e6e619d7aea4eeb228fa6b6da47c587855fa60c6 100644 --- a/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb +++ b/easybuild/easyconfigs/s/SAGE/SAGE-6.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb b/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb index f51861712892f3d3088ed5591cc077bfe7cd43e0..44c08dffd3a1bfd64e2e570dbc72c1a22dc02a87 100644 --- a/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb +++ b/easybuild/easyconfigs/s/SAGE/SAGE-6.4.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.17-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.17-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..53a5edea87e8b0e97d562511a1563dff3b15326a --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.17-intel-2017a.eb @@ -0,0 +1,19 @@ +name = 'SAMtools' +version = '0.1.17' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://github.com/samtools/%(namelower)s/archive/%(version)s'] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 073affc93bf62d87a903cff1aefe15e35f4ccaff..41c9a41b52cbdf6654e99b080ed1768796f0c6b9 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index 5b8825becb9a2f1730e2b426d98820dea5dafabc..cb95f09db12ec87bc9f5cd73d25ed805e5ba3eb0 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index e632ad1cd5caf5bc2d499fee5ecb0b26249f9340..c3c62371e337493f219c5d0f9d97c420967b5bf0 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index d1a314837966c07fca5e001438ad1639a0545b16..4feaa862951a49fd7429d92514bf70213559b2e8 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb index 37118ac1e183b33c640fcc6b1be9add4cb8b32b5..fe530c9987b3bb26f9fdf14cc91ab42637cc4e55 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb index ffeec869d84fc1e180f1e5fda0614df6be32c359..6d55792df58d6be92b74985ab40693920ed902b4 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index f6766acbd26aac25f5c3b84c9726230c6851ba52..143b4f0e11eef88650f81b530a3761cbea5f592d 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb index 805874583a9b3a81d667859ea92480f6d94c5e2e..ec9e8200a52c8a593c3719c0d14fd928979c5a8a 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb index 3835083700e6a61402f7f002d7477c15b2305ada..e36e28d9bb154a7ad7505bb3976baeee3e703537 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb index be9360b7e58260f70071ebc91dce097c3a1a5d0f..a99016b9902c37c980d5760ec0332967aa9ed3d4 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb index 598ba6e51e620a64765c5152f8895f4b84789e15..e1dd81f16023f7457964e6c0c6af0bc124bc0e21 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb index 97a147d8ecfe0b29fc5b1dd0ffbb9314ec13f560..b93365bdd789d3960942351123d4daed52501fbe 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb index e3ff7301d8bf43ab5f1a5dc47b841caf6381d52a..ce7c10f8f23b352388854712b8acc76b503d3565 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb index 289687681922c87ccefe6248634cd0b485007881..09d30b179c3e333589e3eeaeb76b75d85a8a9d27 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb index 739c632246bcd9469d420af8af445945179efe52..303f3a583d7d8d119a2b02a7af841e66b69a1580 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015b-HTSlib-1.2.1.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb index 4ff251eb7303ffd4196818b02532a2dcdc83f843..63b113948c8f8e760fc85b3c7213ca61c23eb3f2 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb index 96d3b95f0f589aff38d705a2139fa9632ce9afb8..40b271c59eab013949c991d4f9e724c5424c0373 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb index d869d21007896411d990c56c08f20a99c0b6d3c6..20c0daa2e9f7188c42d1ba9f3437c3429cc4719d 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb index a7026c36d0ea34c5ca96e7cf06b3861a2b2b5e04..af67f0ad298166019c78cf564c89c1d42fa8468a 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb index 7fa65122da6adf2cade52e15cb64bf0a93dc0977..1fcd04d5c51c03f94851a05e95e9f29d9411c16b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb index 91ca187c34fd6563aafe6d71bdd9d9fdb090844c..8a9d0ec272503d8513c300c2f03d839fae05d07b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb index cf342e2224a2bffe8f71631180fb715e368d0b2c..aaae3bc65c2aa3ef4e800b53d8f46cdf9615576b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b-HTSlib-1.3.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb index ad73efb9d97c3caff60f68af3249977d1baaee47..1d3b8759e622e4809a8bdd47ecf9ac7ff772ac66 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3.1-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb index 340f9547b81cb4696761761939a6da123c765cb4..becb1e33dffce2b48ee1cb083df31efe18963de8 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb index f62000066175bc24469bed539dd3c70416a34925..a590f0e5c55d859bfb0f87d0715ee64261afed00 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb index 3167310f24bc4b1343a34b37de34ce04e967f2ee..5fc351ad6844320977c154fa66243b94c2482eb2 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb index 86a737bc611285559bf5c333a288d58f3a6b0146..a9362a745f1cbce29a90471eaa40c11bece27abf 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1cb0955d1915a6ace36f7e3ac058d18e0196920c --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.4.1-intel-2017a.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# Modified by: Adam Huffman +# The Francis Crick Institute +# +# Modified for version 1.4 by: Kurt Lust, UAntwerpen +# +## +name = 'SAMtools' +version = '1.4.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +# The htslib component of SAMtools 1.4 uses zlib, bzip2 and lzma compression. +# The latter is currently provided by XZ. +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.3'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..30006e4f3c06cea89d9fa690f253471753ad9b63 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-foss-2016b.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# Modified by: Adam Huffman +# The Francis Crick Institute +# +# Modified for version 1.4 by: Kurt Lust, UAntwerpen +# +## +name = 'SAMtools' +version = '1.5' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] +checksums = ['8542da26832ee08c1978713f5f6188ff750635b50d8ab126a0c7bb2ac1ae2df6'] + +# The htslib component of SAMtools 1.4 uses zlib, bzip2 and lzma compression. +# The latter is currently provided by XZ. +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.2'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb new file mode 100755 index 0000000000000000000000000000000000000000..ae85c244273f9377f24569e70b3ce7a7e8e5e486 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.5-intel-2017a.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# Modified by: Adam Huffman +# The Francis Crick Institute +# +# Modified for version 1.4 by: Kurt Lust, UAntwerpen +# +## +name = 'SAMtools' +version = '1.5' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +# The htslib component of SAMtools 1.4 uses zlib, bzip2 and lzma compression. +# The latter is currently provided by XZ. +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), + ('bzip2', '1.0.6'), + ('XZ', '5.2.3'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb index d732b448eb4c483f267e48bbb72369db9030efad..ec8b73d7259453b4e0763bc0e177395930c29854 100644 --- a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb index 88fe827b030bb2923ea49a7f9d70f5cb87edfeef..607082a50217ac158003a8658dd1d96b7fbc090e 100644 --- a/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/s/SCANMS/SCANMS-2.02-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9f1e6bee5766841237b72dbbd1f4fe88c0e46e82 --- /dev/null +++ b/easybuild/easyconfigs/s/SCnorm/SCnorm-0.99.7-intel-2017a-R-3.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'RPackage' + +name = 'SCnorm' +version = '0.99.7' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://bioconductor.org/packages/SCnorm' +description = "This package implements SCnorm — a method to normalize single-cell RNA-seq data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [ + 'http://bioconductor.org/packages/release/bioc/src/contrib/', + 'https://bioconductor.org/packages/devel/bioc/src/contrib/', +] +sources = ['%(name)s_%(version)s.tar.gz'] +checksums = ['f7f6b63aade398ab8f7860ca895914c7bd8161bf2387f2727fe44a897124ae02'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('R-bundle-Bioconductor', '3.5', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a.eb b/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..cfdd0743d4847403bbcfc00d6140a49320f645d5 --- /dev/null +++ b/easybuild/easyconfigs/s/SCons/SCons-2.5.1-intel-2017a.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'SCons' +version = '2.5.1' + +homepage = 'http://www.scons.org/' +description = "SCons is a software construction tool." + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +# SCons requires Python 2, rely on system Python so we can use SCons when module for Python 3.x is loaded +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +sanity_check_paths = { + 'files': ['bin/scons', 'bin/scons-time', 'bin/sconsign'], + 'dirs': ['lib/%(namelower)s-%(version)s/%(name)s'], +} + +options = {'modulename': False} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index cd91fac4e45cd58bc024da27d09b3de8b5574afc..1d6583cd4c2e08bccfa20ae4eb71b121f21c29d4 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb b/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb index 9d089f04eb6ce8fe5e556c92a0fe0929a3eeee15..e43bffbbb49d1f08376cd46382c3caa8deb8786d 100644 --- a/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SDL2/SDL2-2.0.4-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb b/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb index f2424bbea4413d3d1572131a13c8a3739e01a1ea..8b988dc0fd6860559c0baa96d56a051aa31159b7 100644 --- a/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb +++ b/easybuild/easyconfigs/s/SHAPEIT/SHAPEIT-2.r837.GLIBCv2.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb index 5c52477972cba40987510d41d6c6d1581400dbc4..08978cbb4bfe9a28bbaa66ff37df5959d67d1e13 100644 --- a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb index e7737796170140164d3121fac915aa6df14c4aeb..89441506e0fb91a69dfe381642145932eec0670b 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a-tools.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb index a093e042cbd71ccbe35f739b1e144d6ebe562fdb..ca3d9eb8ab64cd11f47d5184ef1d38a50e04a63b 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.6.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb index 7e537ec0fb74d1ce0643e97c730dce9f2b7a0ecd..d9d11099a34eb3323b8dd3a3fa2ef6b32028f10a 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a-tools.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer @@ -42,4 +42,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb index 46e980be5fabb23679bfa8fe332bc4620e30e770..37b3f1f4e715195f92e959c0d4dbba4b4596c827 100644 --- a/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb +++ b/easybuild/easyconfigs/s/SIONlib/SIONlib-1.7.1-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany # Authors:: Markus Geimer @@ -36,4 +36,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb index 49346a9d1c3e09f8e1e220b9bb52badcb4ee6be3..90532985800ef8a20d9195247a6f061115d4c309 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb index e61810f5fd719695670a96fcaf4a9a49f47f70e9..c121f5bccb942cb44e44bfbc3dba2879924ec5d0 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb index eed3ec9cee2bcd3192cf420e752025087e5edb23..472bc669cef141685482bbb0f1e0820a4d91ffce 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb index 517317038b1a4653c3d031057ad96987c5d28491..4370af06f2142213dfb3da5c0588f6ac390f72c4 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb index b2e1479cba032d634c25261e72fadb3f0e4bd471..fc5e6d4e1f3d458114975608f9dc4c4c84aef507 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb index 0ac8c1861dc319fa5edca39d8d3b4a8316e22ae2..8d523f3226c3bf2462551b088b1546d72b537c21 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb index b3dda163251fb2506504094814dfa5c6d53f25cb..09c013815db20d0ef1b618cf0adf9c7ce55090b4 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18-intel-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb index dbc48b8044d8de9956052828588f23750d75e32a..a247773edd94ca98b9d2a8cda413c9ada61f1757 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb index 57997a86bf365f99400571c661a8530c48d1fe1e..f0abfcf40e4ec742dbdefe0decb7ea95a8318f15 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.18.1-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb index be020214d208cc75a91f6d54dfb1130f95bc3b00..9f50c745690c751288b6ddf757297030d5c9ea1d 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.19-foss-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb index 9f5fa19c2405b19b80789b58f2f17d3b5c8e14ec..2e69e76a1afadfbd2a3cbf5ddeb35ae5e7dc983d 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.19-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Bart Verleye # Center for eResearch, Auckland easyblock = 'ConfigureMakePythonPackage' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..cea8cbea9cbfda764c0d9ed3cdc2391d38078fd7 --- /dev/null +++ b/easybuild/easyconfigs/s/SIP/SIP-4.19.2-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,30 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'ConfigureMakePythonPackage' + +name = 'SIP' +version = '4.19.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.riverbankcomputing.com/software/sip/' +description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] + +dependencies = [('Python', '2.7.13')] + +configopts = "configure.py --bindir %(installdir)s/bin --incdir %(installdir)s/include " +configopts += "--destdir %(installdir)s/lib/python%(pyshortver)s/site-packages" + +sanity_check_paths = { + 'files': ['bin/sip', 'include/sip.h'] + + ['lib/python%%(pyshortver)s/site-packages/%s' % x + for x in ['sip.%s' % SHLIB_EXT, 'sipconfig.py', 'sipdistutils.py']], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index ed0395223c0f987f3529b023e390ac0bd151bfa7..07bc8cff7aa04162bd5647eef104d570e9dcd47a 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index 16d05cf3415d4629cc248f5ca3056d83d4f86e8d..7d14bea6a9282f7ef858be91316e599651dd1320 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb index 67f7cd27da2a5e2797fae76372864fe19f2b66c9..8734a7daed79a0343e72d700b804e2faf6485468 100644 --- a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb +++ b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb index 05651770f255c298fa1280a02b6d5a26e05a4455..f288d7f917c6d113daa1725f1c9442419a9a44f7 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb index 0ce4a98f03a7ce0941e95ac157a0afdc9f52c69f..762c7d68fd786dbd841dab1d39d9081f6b9d97fe 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb index ab6bd52347d6edb3be4ed7f7600a344124f7b54c..672b4b6174df49e85a9a7c41f446fb5a9be0266d 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb index 5eb12170f691dabeff20d40076ee7ea346823cb8..36652b20f0e7036bd45634526f1361794d41f8f3 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb index 6e5c9aeb32976d72204dbe1dab1279f1e50f3fcb..5d56e586a24c90ef41713ca43befc5122eae570d 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.10.1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb index b8ae8d0ad8e5d9dbe668ae176e5be97b9fd4d9fe..50ca4cd509d9abafed06edb8dd8a8f04dfa35420 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb index df712d6830e021244dc5e9007615cec963ad836e..46422756f799a3c42e5e93077afd136044497b06 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.6.2-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb index af3845c60d3667cb3aab66edc57688e12c25a5ae..52377a3fe1906f07b85d150452654259bc260419 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb index a92f27ffacdc39c0c7ff8d172e787286fe62de0c..00831a4e1c77a296939ac611400ca661a4bd2805 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.9.0-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb index c435d47a74ea04b3011d892f400f39138b4b3fc6..17f00411a9769d4f0b613d2c5e6efa8147cbd32c 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb index 212dfd1d759aa2babb6fef13c6dc9a71626c4fc5..16c91c0d283a0e87b1068fdd6fede3fc660f7a5a 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb index c8632b48d572c276b996aba0b56456a7b0c36ec9..1d32b0c2a3578df3af971cb518585a3ba97c5053 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCC-5.4.0-2.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb index f7ba78e65490810e94a492d60a75b72717958ad8..f9639f1cf89f9311794cba63f0280c124e82fd6b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-6.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb index ee0989cdf47ed8c704440cd282ede5d793f06632..e48edbbcf7adf6fd3626973f0f58b1533b702b25 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016.04.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb index ec5703f27d295215cc4c2feabe8bbc54f2fc6861..2bfe96771adcc9e20d26509ec70d46b466806d08 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb index 1c9912537cd18e464e190ab516d13458d1f91a72..c95b85d4e3ef21ff1663b40db1aa0999fc902345 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..6e1bb042c83358de481aba98286973b06cd5db59 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.13.0' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} + +source_urls = ['http://www.sqlite.org/2016/'] +version_minor_etc = version.split('.')[1:] +version_minor_etc += '0' * (3 - len(version_minor_etc)) +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version_minor_etc) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.5'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', + 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb index e6b03228911fc5aded438146b45172caa9daa78c..701c924942d6d4fcca03534f567e8683eb998785 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb index cb84023340bea0a91d547e3c76dc278c12f7e729..55a1ec7a8936d0e7dc1d590220fc8ded70327cfe 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.14.1-GCCcore-4.9.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb index 41b5a58bd2f43ce24149f8da9f6eec7decf247ff..d5d4a80684192939f9d59282108cb3bac3d3d849 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.17.0-GCCcore-6.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e10115f361d1442b70a054ae0fe3c32b6df0199e --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.19.3-GCCcore-6.4.0.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the +# policy: http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.19.3' + +homepage = 'http://www.sqlite.org/' + +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +# eg. http://www.sqlite.org/2017/sqlite-autoconf-3190300.tar.gz +source_urls = ['http://www.sqlite.org/2017/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] +checksums = ['06129c03dced9f87733a8cba408871bd60673b8f93b920ba8d815efab0a06301'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('libreadline', '7.0'), + ('Tcl', '8.6.6'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', + 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index e74d6f7a39766fa092500382030b609632320ed2..f3308cf41ccab89ededbd50a58fe1a4ba72d3bd1 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index 30d45082a108519460d3aa99726ecbecdbbd15c8..e3447aee6be04218501c541416f8ebe0d9e9b696 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index c08623a5a59b7af21c42bac4f65a93584f6e1ae9..f65ec4dae62a21671fe9758b77e86834b28d7ce7 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index 05b5ca95c117dd1c498dd1a5f1c40f969dcb1b24..80c5606194f2f5945c134e800b8c1dd492366412 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb index 15a228e4cfc9b4bd122434011507cd6bccbfb101..2a4b96094aa4316c6330050506ca7712fc58c7bc 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb index 87526d7754bf4761dcf583fd873a6d3d79292399..8ce08d273da04a80422d8e7721d2ad20b1595e90 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GNU-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb index 0e3d5b09430ed07edfbb7cd4c0034e7938a090d0..9fe38bf12a1628f6888e9bd531fcf2b0499ee1dd 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb index 3cdb5e9a31fbfc508208b3558c63f8198434aaba..5a806bef031bb29d47754b7ea40978fb67cbef2b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb index c9bee3d1d5acad8ec0e9aa6e33a6bf7392a175bd..0d4572d689a7fcf77f9268a53486857ec3efbfac 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb index 2b1f98a6ac983759dc616a9651729b2bec0cfa3f..e01c86890607cef2d0b3cdd124e182a1305dbb36 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb index 86716967ffc8b7a52a5ec1b8d1b2ba6da070694f..7fb046898e3500f3a2f7cf0abf3336edd0857cf3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb index 70270519d3f01f4ec89fd66243ebb0cba989b8d8..8738842f40d1b9b6723829e4dbca44461a1af079 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb index 5c38e72b1ad0b072caa888d6175a1ba6ec6e6ace..94e236ef73fb2fe13ce07bc333994e457cc7ebb3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb index 0a07713fbb5ea66d2b195b31db03f56727b7f1d2..db742635b8c915cc6249787fed503b905e76229d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.4.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb index 72f8da9d34e2fb34cdd60417b000cedfc6b59128..6cd5fb9e4fc685a9fb94247a62713b191944b86b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.5-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb index ac855e7cba016f96354e6ee4dfd766b2c7842125..883edbcbca3ecf2b8b2226b168cc9db8971ec383 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb index f0ed15f86c2fc14128c7d7ffa75499170df4e4a2..00aa9db43337557cfeb7c9e7a0a48deda812dd76 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb index 27cd84d7ec041f654f7d5fd0ed068d683fce9431..77933d168ba99727534c2ec68fe98d02be7da6c3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.8.4.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb index ed00f7b98118e00660598ab90df90abf62f66049..53c285b78030243617414ab4bbbcbb5d6136170a 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb index 5e77859d0758dc3e6880c242b90029237e0552a9..bc6c9dd40e7bd2aeddbeb3ecb9a06e8bc4ad1d0b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb index a8d05d1f1812277b65b503324696401a259d7c6b..2916ae6c7edc9411b7ea84100ca6d65e9bb260a0 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb index b3cfb08afd9932c4d94921d5f0ad09d999f700aa..fb622bfe69b6f442462fa4abd6df599d3b287f4d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb index d4af19e4fa10770ad9e26e5a0829efbdba1cb3a9..55e1cd7d9f72bbc1d1878e221e6e348981d96fae 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb index 763de183e3b2388df89c6ed94c3ce524f5ee9a91..31dbee8c485bf33dd5c3ea2c8e476225df7e22dc 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb index 6946daaee7f143abbc3a051e200b92ec5a0a968e..c93baeda44f1c6aab11bc037fe7fa1c62a70c8ea 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.16.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb index ee10abf94853081b471a6cfaae6b205fd191a6bc..53e7f6572d33071a81bbcfc977937d124afdf4ea 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb index f5e96601f1c29872133cd8ebac5fb30ebf970b49..3dcf095ade1395edb99587513d67bdde472caf87 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..dd707477c94ab395d82173fea1d4f022832aacfc --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.9-foss-2015a.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +name = 'SQLite' +version = '3.8.9' + +easyblock = 'ConfigureMake' + +homepage = 'http://www.hwaci.com/sw/sqlite/' +description = "SQLite: SQL Database Engine in a C Library" + +# eg. http://www.hwaci.com/sw/sqlite/2013/sqlite-autoconf-3080100.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +sources = ['sqlite-autoconf-%s0%s0%s00.tar.gz' % tuple(version.split('.'))] # very weird way to calculate your filename + +toolchain = {'name': 'foss', 'version': '2015a'} + +dependencies = [ + ('libreadline', '6.2'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb index 408f74829a1280fc3d4b1c81696ff9fca3f6ff63..9084d936c85f4d357cdfb52a944f247bdf9f634e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2015.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb index 5c92bc81368cac969b77db8d56ab73c49839b35d..2eb44c755da6989cbf841cb2a873c13f94efea94 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-CrayGNU-2016.03.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb index 5c86155323d7709e14db16f8a7c3c658989eaa9d..bb425e87a70b944e8f550eb0ab2cbba93dd827c8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb index 8902612f46b4678821d4f7fff6b3065d133b379f..f7d80fd057e9ed28e2b66c9fe21e2559f62363a4 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb index 4b9cea2422164d46c7714aff891e2cf985aa3383..55a3d892fc462beaeb2d7846b1f944e9ce7b8896 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb index d75861cbb66d1b2fcbbf164916054ae7d4139656..b694c4fcaadfec6291e250647ab2c935b173cce5 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-goolf-1.7.20.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb index 177a74a0fbe28fa5296a165de5525f0bbb0f06fd..28138bf96874bc4f502d1f30f0945f75f13e4b1b 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb index 885ab346a94862dd491f56d518f791e813d6bd2d..ecce43f756027a3fb31a33c4737b9bab72637c23 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb index 46583c5246dd0a8fb355ec1c1c3ad901f34b80e3..21da1895728b4c31ff3a0fdcb9aeb52502ef52df 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb index c1a72bbbe4eb833694c78ec0a8e7f9875cca25a1..fb1547876e224d4a357f7b4e2f5242c53c9499fd 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.07.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb index 68f9f01974dcd3ff9525ea58d688385095167b98..3de2d7ff50e00eb2a4191381cee0c213d1f6b099 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-iomkl-2016.09-GCC-4.9.3-2.25.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb index fc325c12fd412351c3880a9ffbe661bd0f1ff047..cfbdcb45e7bf7dd6306cc66502d406fcb8809207 100644 --- a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.3.5-centos_linux64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb index 54156d430362f194c3e0815ee79c2e3c9c37d1e4..263ce2d19fc6594c576a4a200e7284ca101696e2 100644 --- a/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb +++ b/easybuild/easyconfigs/s/SRA-Toolkit/SRA-Toolkit-2.5.4-1-centos_linux64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb index 0e8750aa56a92bca49be6c674c2413e423a96a74..c7d58c5217d3f7f3d17fc92a324b9012a0fe79f9 100644 --- a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb +++ b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb index ea1f495c8a6b9f24ec2dcaf74d60f7ef3fb3c9f0..24b10cedf9db3b90c4e50b122da27f8440e2529c 100644 --- a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb +++ b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SSPACE_Basic/SSPACE_Basic-2.1.1-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/s/SSPACE_Basic/SSPACE_Basic-2.1.1-intel-2017a-Perl-5.24.1.eb index 9d51ecf299c8c3963cf999f8b6be8f70a60f8e22..d196a375f06eea930af393dee87b0254dbac5f55 100644 --- a/easybuild/easyconfigs/s/SSPACE_Basic/SSPACE_Basic-2.1.1-intel-2017a-Perl-5.24.1.eb +++ b/easybuild/easyconfigs/s/SSPACE_Basic/SSPACE_Basic-2.1.1-intel-2017a-Perl-5.24.1.eb @@ -18,10 +18,13 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['README', 'SSPACE_Basic.pl'], + 'files': ['dotlib/DotLib.pm', 'README', 'SSPACE_Basic.pl'], 'dirs': ['bin', 'tools'], } -modextrapaths = {'PATH': ''} +modextrapaths = { + 'PATH': '', + 'PERL5LIB': 'dotlib', +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb index c87beb9409d680024e5903ce83cec0e901e26b69..4b19365503253d84f24e14b5507251b1707633ab 100644 --- a/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb index c819f307db7716444808d574a550bc59d707377a..851afee49530611cafc4b7f3f853d91e01d9daef 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb index 04188b3f1aa186c655082bea1a5ec7f16cbad567..c464f7f180967021106c8a760912eca738d490cb 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb index 457ab933f77dedbea0c46b51107ee9bc2249b048..3b0c1e3f28928651bdb9fa848be9586d2c7e5957 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb index b4f28e006edb94bfd49ee28b19993dd7bcb5aba2..ce729a34b0a60ea5971952c5e7c502d1917e1038 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb index acf5436cbec2dd0ef0db0d4f1c0f188eadc305ce..6147b68e4b0e5530036a396e1c5bd80657694db1 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb index 43cc47b2aa1c809271a9515625463e6fb7575734..47cc2f8fb86cb9585ebdc37013fef54ea2313fb1 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb index d8c6f0be04287f0e426a8200720ae397a6efa9a6..6655aaf6999af7641f199bd2b797812978b10dd2 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.2a-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb index 05c3e56c2fab7ebccfd8993a66165b198d31369b..fdff081070632053de2252bdfcfad5948db0ca5f 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.2b-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..02ac65a9a019b71ee70fdf0c1c6db6a1c0dd3461 --- /dev/null +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.3a-intel-2017a.eb @@ -0,0 +1,43 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# Modified by: +# Adam Huffman +# The Francis Crick Institute + +easyblock = 'MakeCp' + +name = 'STAR' +version = '2.5.3a' + +homepage = 'https://github.com/alexdobin/STAR' +description = "STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays." + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/alexdobin/STAR/archive/'] +sources = ['%(version)s.tar.gz'] + +dependencies = [ + ('zlib', '1.2.11'), +] + +start_dir = 'source' + +buildopts = ' STAR && make STARlong' + +parallel = 1 + +files_to_copy = [ + (['source/STAR', 'source/STARlong'], 'bin'), + 'CHANGES.md', 'doc', 'extras', 'LICENSE', 'README.md', 'RELEASEnotes.md', +] + +sanity_check_paths = { + 'files': ["bin/STAR", "bin/STARlong"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb b/easybuild/easyconfigs/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb index 352f9013ea58102bda4c8c3ded4086abf7dce5bf..a8666f197a2358d38304ae5e034476ede07b312c 100644 --- a/easybuild/easyconfigs/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb @@ -15,7 +15,7 @@ toolchain = {'name': 'foss', 'version': '2016a'} source_urls = ['https://git.metabarcoding.org/obitools/sumatra/uploads/251020bbbd6c6595cb9fce6077e29952/'] sources = ['%(namelower)s_v%(version)s.tar.gz'] -prebuildopts = 'make clean &&' +prebuildopts = 'make clean &&' files_to_copy = [(['sumatra'], 'bin'), 'sumatra_user_manual.pdf'] diff --git a/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb b/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb index bf5aca83719e4d7ad3b9a4b66eabd26a2e0c5bc0..29f05e2070644c776fa680bac18d778bdffc5f32 100644 --- a/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb +++ b/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb @@ -14,7 +14,7 @@ description = "A molecular surface solver, which can be used as rendering method toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://www.ks.uiuc.edu/Research/vmd/extsrcs'] -sources = [('%(namelower)s.tar.Z', 'tar -xzf %s')] +sources = [{'filename': '%(namelower)s.tar.Z', 'extract_cmd': "tar -xzf %s"}] builddependencies = [ ('makedepend', '1.0.4'), diff --git a/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb b/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb index c10863bf7083b5b7801f0c19dfcdc0e12cf03705..4fb273d1b66ac9b10c6100dbb96ebc85b9fe15af 100644 --- a/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb +++ b/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb @@ -14,7 +14,7 @@ description = "A molecular surface solver, which can be used as rendering method toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://www.ks.uiuc.edu/Research/vmd/extsrcs'] -sources = [('%(namelower)s.tar.Z', 'tar -xzf %s')] +sources = [{'filename': '%(namelower)s.tar.Z', 'extract_cmd': "tar -xzf %s"}] builddependencies = [ ('makedepend', '1.0.4'), diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..5c78d52fbe5263d998a23eaf91f539a7be7a7736 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.12-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,20 @@ +name = 'SWIG' +version = '3.0.12' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('Python', '3.6.1'), + ('PCRE', '8.40'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b7cab53e10086d0afd0806a299c934811267de9 --- /dev/null +++ b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'Sailfish' +version = '0.10.1' +versionsuffix = '-Python-2.7.12' + +homepage = 'http://www.cs.cmu.edu/~ckingsf/software/%(namelower)s/' +description = """Sailfish is a software tool that implements a novel, alignment-free algorithm for the estimation of + isoform abundances directly from a set of reference sequences and RNA-seq reads. """ + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/kingsfordgroup/%(namelower)s/archive/'] +sources = ['v%(version)s.tar.gz'] + +checksums = ['a0d6d944382f2e07ffbfd0371132588e2f22bb846ecfc3d3435ff3d81b30d6c6'] + +patches = ['%(name)s-%(version)s_skip-included-Jellyfish.patch'] + +builddependencies = [('CMake', '3.7.2')] + +dependencies = [ + ('Boost', '1.63.0', versionsuffix), + ('tbb', '2017_U5'), + ('Jellyfish', '2.2.6'), + ('g2log', '1.0'), +] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': [] +} + +# build fails otherwise +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch new file mode 100644 index 0000000000000000000000000000000000000000..6f8d75e09831e59d0ec056194f26afaada7750e9 --- /dev/null +++ b/easybuild/easyconfigs/s/Sailfish/Sailfish-0.10.1_skip-included-Jellyfish.patch @@ -0,0 +1,64 @@ +* skip downloading and building of Jellyfish, since it's provided via EasyBuild already +* don't hardcode $CMAKE_CXX_FLAGS +author: Paul Jähne +--- CMakeLists.txt ++++ CMakeLists.txt +@@ -25,7 +25,7 @@ + + ## Set the standard required compile flags + # Nov 18th --- removed -DHAVE_CONFIG_H +-set (CMAKE_CXX_FLAGS "-pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type") ++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -L$ENV{EBROOTJELLYFISH}/lib -ljellyfish-2.0 -pthread -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type") + + ## + # OSX is strange (some might say, stupid in this regard). Deal with it's quirkines here. +@@ -287,23 +287,6 @@ + set(SUFFARRAY_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/external/install/include) + + +-message("Build system will fetch and build Jellyfish") +-message("==================================================================") +-ExternalProject_Add(libjellyfish +- DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external +- DOWNLOAD_COMMAND curl -k -L https://github.com/gmarcais/Jellyfish/releases/download/v2.2.3/jellyfish-2.2.3.tar.gz -o jellyfish-2.2.3.tgz && +- rm -fr jellyfish-2.2.3 && +- tar -xzvf jellyfish-2.2.3.tgz +- SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.3 +- INSTALL_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/install +- CONFIGURE_COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.3/configure --prefix= CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_COMMAND ${MAKE} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_IN_SOURCE 1 +- INSTALL_COMMAND make install && +- cp config.h /include/jellyfish-2.2.3/jellyfish/ && +- cp config.h /include/ +-) +- + find_package(TBB) + ## + # +--- src/CMakeLists.txt ++++ src/CMakeLists.txt +@@ -43,7 +43,6 @@ + ${GAT_SOURCE_DIR}/external/cereal/include + ${GAT_SOURCE_DIR}/external/install/include + ${GAT_SOURCE_DIR}/external/install/include/rapmap +-${GAT_SOURCE_DIR}/external/install/include/jellyfish-2.2.3 + ${ZLIB_INCLUDE_DIR} + ${TBB_INCLUDE_DIRS} + ${Boost_INCLUDE_DIRS} +@@ -97,7 +96,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + m + ${TBB_LIBRARIES} + ${LIBSAILFISH_LINKER_FLAGS} +@@ -115,7 +113,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + m + ${TBB_LIBRARIES} + ${LIBSAILFISH_LINKER_FLAGS} diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ef3760d15f2d3e9de18af94d2bffd683dd5ddc6 --- /dev/null +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2-foss-2016b-Python-2.7.12.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'CMakeMake' + +name = 'Salmon' +version = '0.8.2' +versionsuffix = '-Python-2.7.12' + +homepage = 'https://github.com/COMBINE-lab/%(namelower)s' +description = """Salmon is a wicked-fast program to produce a highly-accurate, + transcript-level quantification estimates from RNA-seq data.""" + +toolchain = {'name': 'foss', 'version': '2016b'} +toolchainopts = {'pic': True, 'openmp': True} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/COMBINE-lab/%(namelower)s/archive/'] + +checksums = ['299168e873e71e9b07d63a84ae0b0c41b0876d1ad1d434b326a5be2dce7c4b91'] + +patches = ['%(name)s-%(version)s_skip-included-Jellyfish.patch'] + +builddependencies = [('CMake', '3.7.2')] + +dependencies = [ + ('Boost', '1.63.0', versionsuffix), + ('tbb', '2017_U5'), + ('Jellyfish', '2.2.6'), +] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch new file mode 100644 index 0000000000000000000000000000000000000000..cc8f3208b975e84dc956599859a0082026807e0f --- /dev/null +++ b/easybuild/easyconfigs/s/Salmon/Salmon-0.8.2_skip-included-Jellyfish.patch @@ -0,0 +1,99 @@ +* skip downloading and building of Jellyfish, since it's provided via EasyBuild already +* don't hardcode $CMAKE_CXX_FLAGS +author: Paul Jähne +--- CMakeLists.txt.orig 2017-07-05 08:07:10.000000000 +0200 ++++ CMakeLists.txt 2017-07-05 08:15:13.000000000 +0200 +@@ -32,7 +32,7 @@ + + ## Set the standard required compile flags + # Nov 18th --- removed -DHAVE_CONFIG_H +-set (CMAKE_CXX_FLAGS "-pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") ++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -L$ENV{EBROOTJELLYFISH}/lib -ljellyfish-2.0 -pthread -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type") + + ## + # OSX is strange (some might say, stupid in this regard). Deal with it's quirkines here. +@@ -459,33 +459,6 @@ + BUILD_IN_SOURCE TRUE + ) + +-find_package(Jellyfish 2.2.6) +- +-if (NOT JELLYFISH_FOUND) +-message("Build system will fetch and build Jellyfish") +-message("==================================================================") +-ExternalProject_Add(libjellyfish +- DOWNLOAD_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external +- ## +- #URL https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz +- #DOWNLOAD_NAME jellyfish-2.2.6.tgz +- #URL_HASH SHA1=53819a57ea8ffae26e3f917babf978f8215ef117 +- #TLS_VERIFY FALSE +- ## +- DOWNLOAD_COMMAND curl -k -L https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz -o jellyfish-2.2.6.tgz && +- ${SHASUM} 4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e jellyfish-2.2.6.tgz && +- rm -fr jellyfish-2.2.6 && +- tar -xzvf jellyfish-2.2.6.tgz +- SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.6 +- INSTALL_DIR ${CMAKE_CURRENT_SOURCE_DIR}/external/install +- CONFIGURE_COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/external/jellyfish-2.2.6/configure --prefix= CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_COMMAND ${MAKE} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CXXFLAGS=${JELLYFISH_CXX_FLAGS} +- BUILD_IN_SOURCE 1 +- INSTALL_COMMAND make ${QUIET_MAKE} install +-) +-set (FETCHED_JELLYFISH TRUE) +-endif() +- + ## Try and find TBB first + find_package(TBB 4.4 COMPONENTS tbb tbbmalloc tbbmalloc_proxy ) + +--- src/CMakeLists.txt.orig 2017-07-05 09:12:35.000000000 +0200 ++++ src/CMakeLists.txt 2017-07-05 09:18:12.000000000 +0200 +@@ -4,7 +4,6 @@ + ${GAT_SOURCE_DIR}/external + ${GAT_SOURCE_DIR}/external/cereal/include + ${GAT_SOURCE_DIR}/external/install/include +-${GAT_SOURCE_DIR}/external/install/include/jellyfish-2.2.6 + ${GAT_SOURCE_DIR}/external/install/include/bwa + ${ZLIB_INCLUDE_DIR} + ${TBB_INCLUDE_DIRS} +@@ -12,12 +11,6 @@ + ${GAT_SOURCE_DIR}/external/install/include/rapmap + ) + +-if (JELLYFISH_FOUND) +- include_directories(${JELLYFISH_INCLUDE_DIR}) +-else() +- include_directories(${GAT_SOURCE_DIR}/external/install/include/jellyfish-2.2.6) +-endif() +- + set ( SALMON_MAIN_SRCS + QSufSort.c + is.c +@@ -135,7 +128,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + ${GAT_SOURCE_DIR}/external/install/lib/libbwa.a + m + ${LIBLZMA_LIBRARIES} +@@ -160,11 +152,6 @@ + add_dependencies(salmon libboost) + endif() + +-if (${FETCHED_JELLYFISH}) +- add_dependencies(salmon_core libjellyfish) +- add_dependencies(salmon libjellyfish) +-endif() +- + if (${FETCHED_TBB}) + add_dependencies(salmon_core libtbb) + add_dependencies(salmon libtbb) +@@ -193,7 +180,6 @@ + ${ZLIB_LIBRARY} + ${SUFFARRAY_LIB} + ${SUFFARRAY64_LIB} +- ${GAT_SOURCE_DIR}/external/install/lib/libjellyfish-2.0.a + ${GAT_SOURCE_DIR}/external/install/lib/libbwa.a + m + ${LIBLZMA_LIBRARIES} diff --git a/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb b/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb index c6c18b59b896719376e0af071a9a4e3dea8b3fe0..aaa111b447def96e015da797d90bb7a2e216e8de 100644 --- a/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb +++ b/easybuild/easyconfigs/s/Sambamba/Sambamba-0.6.6.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -18,7 +18,7 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = ['https://github.com/lomereiter/sambamba/releases/download/v%(version)s/'] sources = ['%(namelower)s_v%(version)s_linux.tar.bz2'] -postinstallcmds = ['cd %(installdir)s && ln -s sambamba_v%(version)s sambamba',] +postinstallcmds = ['cd %(installdir)s && ln -s sambamba_v%(version)s sambamba'] sanity_check_paths = { 'files': ['sambamba_v%(version)s', 'sambamba'], diff --git a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb index 55d127b2f7d9b73bbcce60e64867ab0c60e3fba1..9c891ad20037e079b879cad78f798e5c75b21069 100644 --- a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.2-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb index 250c8ea829c5f46d148968ac376636873704c3d8..f768f2c53c7d323dc7700ecac5272d207bc7b72f 100644 --- a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.3-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb index df0333c95eb5cb399e5a0ca56b8df61e9e322fd1..26a76a0f44bae6012ae4fbe5da4fa6701d4476d4 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.1-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb index 137bacee9cab4f55cbfc869ca4330c81a0c97e92..3f228919973db285d9fac63a2694dd5fb0faacb6 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-1.2.3-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Authors:: Jordi Blasco # License:: New BSD # diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb b/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb index 91b0941367ae6df6439ce4d8d3a890e732f8a3f3..c70a882623e0c76eb3afae3db1419974cac09eb0 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-1.4-foss-2015a.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb b/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb index 5df9e5efffae1c0a3c5c6d88100ac3c2112e87e7..65fe9f43f322e72c3469c2c1344a9f3a9bce47eb 100644 --- a/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Score-P/Score-P-2.0.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # Markus Geimer diff --git a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb index 8a868683035dbe42e19aaa44cbc42c185b674d5c..31c53447fc75d69ea6ee533cd776f7bd5e02fb9e 100644 --- a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-goolf-1.4.10-Python-2.7.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb index a2b58989a1840342a5f76f33850752e315e44e74..1cbfd0027aa8b19edf528b7a065d36feef97b1dc 100644 --- a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.6.0-intel-2015b-Python-2.7.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb index c0dc9e45f89a6db0b390e96474539abf5cdd531f..e80e2daca5c5b18457f9706af5a0d5ca4f34bb95 100644 --- a/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/s/Seaborn/Seaborn-0.7.1-intel-2016b-Python-2.7.12.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb b/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb index 1b943d40629f80f642a5024e671bc59bf09951cd..a54e53ac82de801197f8d887a45636d815a10e9c 100644 --- a/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb +++ b/easybuild/easyconfigs/s/SelEstim/SelEstim-1.1.4-Linux-64bits.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb b/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d596bb25f82a63cba08170e9478cedbe729bae8 --- /dev/null +++ b/easybuild/easyconfigs/s/SeqAn/SeqAn-2.3.2-foss-2016b.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = "CMakeMake" + +name = 'SeqAn' +version = '2.3.2' + +homepage = 'https://www.seqan.de/' +description = """SeqAn is an open source C++ library of efficient algorithms and data structures + for the analysis of sequences with the focus on biological data""" + +# GCC > 5 required. https://github.com/seqan/seqan#prerequisites +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/seqan/seqan/archive/'] +sources = ['%(namelower)s-v%(version)s.tar.gz'] + +# CMake > 3 required. CMake >= 3.4 recommended +builddependencies = [('CMake', '3.7.2')] + +dependencies = [ + ('zlib', '1.2.8'), + ('bzip2', '1.0.6') +] + +separate_build_dir = True + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["gustaf_mate_joining", "mason_materializer", "mason_variator", + "rabema_prepare_sam", "seqan_tcoffee", "s4_join", "samcat", "splazers", + "yara_mapper"]], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb index 86ba1ed78fcfcb9a1cab449a63b421728273f586..5baf4c32003fd7f06d4a0c2b39e91558d3551e8d 100644 --- a/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SeqPrep/SeqPrep-1.2-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb index ae2145d3dff09f4d8df0f69c9f8fcbbe50029026..e171a32650420345ed84e6c2e402d05bebf79b7c 100644 --- a/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/s/Seqmagick/Seqmagick-0.6.1-foss-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2016 University of Geneva Switzerland # Authors:: Yann Sagon diff --git a/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..60c29277334a2460117d33a2daf9845242eea01e --- /dev/null +++ b/easybuild/easyconfigs/s/Seurat/Seurat-1.4.0.16-intel-2017a-R-3.4.0.eb @@ -0,0 +1,26 @@ +easyblock = 'RPackage' + +name = 'Seurat' +version = '1.4.0.16' +versionsuffix = '-R-%(rver)s' + +homepage = 'http://satijalab.org/seurat' +description = "Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data." + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/satijalab/seurat/archive/'] +sources = [{ + 'filename': SOURCE_TAR_GZ, + 'download_filename': '3bd092a.tar.gz', +}] +checksums = ['2079b09698aadc1f3fdd3de5ac708add7196f4713d9f6a01b85d05b3a6ba2ec5'] + +dependencies = [('R', '3.4.0', '-X11-20170314')] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb b/easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a7acc195e9df833a596e47f9412588a25f87d40e --- /dev/null +++ b/easybuild/easyconfigs/s/Siesta/Siesta-4.0.1-intel-2017a.eb @@ -0,0 +1,17 @@ +name = 'Siesta' +version = '4.0.1' + +homepage = 'http://departments.icmab.es/leem/siesta' +description = """SIESTA is both a method and its computer program implementation, to perform efficient electronic + structure calculations and ab initio molecular dynamics simulations of molecules and solids.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://launchpad.net/siesta/%(version_major_minor)s/%(version)s/+download'] +checksums = ['bfb9e4335ae1d1639a749ce7e679e739fdead5ee5766b5356ea1d259a6b1e6d1'] + +dependencies = [('netCDF-Fortran', '4.4.4')] + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb b/easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..44fa8757f723ea40aa89161d84a807f5b964fec1 --- /dev/null +++ b/easybuild/easyconfigs/s/Siesta/Siesta-4.1-b3-intel-2017a.eb @@ -0,0 +1,18 @@ +name = 'Siesta' +version = '4.1-b3' + +homepage = 'http://departments.icmab.es/leem/siesta' +description = """SIESTA is both a method and its computer program implementation, to perform efficient electronic + structure calculations and ab initio molecular dynamics simulations of molecules and solids.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +vl = version.split('-') +source_urls = ['https://launchpad.net/siesta/%s/%%(version)s/+download' % vl[0]] +checksums = ['f51970f34ee9b6b9de7fb77f722dde4e10817bafe7315716502eaa22bb96a090'] + +dependencies = [('netCDF-Fortran', '4.4.4')] + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/s/Singularity/Singularity-2.2.1-GCC-6.3.0-2.27.eb b/easybuild/easyconfigs/s/Singularity/Singularity-2.2.1-GCC-6.3.0-2.27.eb new file mode 100644 index 0000000000000000000000000000000000000000..94de58b73119310a787b0cc29faf9665c8395b4c --- /dev/null +++ b/easybuild/easyconfigs/s/Singularity/Singularity-2.2.1-GCC-6.3.0-2.27.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'Singularity' +version = '2.2.1' + +homepage = 'http://gmkurtzer.github.io/singularity' +description = """Singularity is a portable application stack packaging and runtime utility.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} + +source_urls = ['https://github.com/gmkurtzer/singularity/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['bin/run-singularity', 'bin/singularity', 'etc/singularity/singularity.conf', + 'libexec/singularity/sexec-suid'], + 'dirs': ['etc', 'libexec/singularity'], +} + +# next steps after instalations +# INSTALATION_PATH=your_instalation_path +# chown root:root $INSTALATION_PATH/Singularity/*/etc/singularity/singularity.conf +# chown root:root $INSTALATION_PATH/Singularity/*/libexec/singularity/sexec-suid +# chmod +s $INSTALATION_PATH/Singularity/*/libexec/singularity/sexec-suid + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..b3cde7397819209daac066130967046029a6a186 --- /dev/null +++ b/easybuild/easyconfigs/s/Singularity/Singularity-2.3.1-GCC-5.4.0-2.26.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'Singularity' +version = '2.3.1' + +homepage = 'http://gmkurtzer.github.io/singularity' +description = """Singularity is a portable application stack packaging and runtime utility.""" + +toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'} + +source_urls = ['https://github.com/gmkurtzer/singularity/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['d25be31b443969b12179fbdb6db38c24002f06234bf923424bda1d662ad34e71'] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['bin/run-singularity', 'bin/singularity', 'etc/singularity/singularity.conf', + 'libexec/singularity/bin/action-suid'], + 'dirs': ['etc', 'libexec/singularity'], +} + +# next steps after installation +# INSTALLATION_PATH=your_installation_path +# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/singularity.conf +# chown root:root $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# chown root:root $INSTALLATION_PATH/Singularity/*/var/singularity/mnt/container +# chmod 4755 $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid +# chmod +s $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb b/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb index a71ba0bca64cad483c78615003a8e682aa316559..08b010527ababdcd7182b5c3f8fa026fd2846b93 100644 --- a/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SoX/SoX-14.4.2-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Stephane Thiell ### diff --git a/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb b/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb index bb975b50f83bd95c22494970366d87b28a382b11..ba655d3a436d321097afbf89d42926c880fd3668 100644 --- a/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb +++ b/easybuild/easyconfigs/s/SolexaQA++/SolexaQA++-3.1.5-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb b/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb index 6af29bdb8bf4ff672d2230b46fd790c108d12ec4..4a5290e8781df8628787b03ce1ac81f02bc5eb32 100644 --- a/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb b/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb new file mode 100644 index 0000000000000000000000000000000000000000..8b3d26f8e7484f88b1c4e539ad71e791e9857f42 --- /dev/null +++ b/easybuild/easyconfigs/s/Spark/Spark-2.2.0-Hadoop-2.6-Java-1.8.0_144.eb @@ -0,0 +1,29 @@ +easyblock = 'Tarball' + +name = 'Spark' +version = '2.2.0' +versionsuffix = '-Hadoop-2.6-Java-%(javaver)s' + +homepage = 'http://spark.apache.org' +description = """Spark is Hadoop MapReduce done in memory""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s-bin-hadoop2.6.tgz'] +source_urls = [ + 'http://apache.belnet.be/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.eu.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.us.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', +] +checksums = ['86f33f6f4fe545cb848600004144f09b6e8413af47ce02c1203c3ecda075288d'] + +dependencies = [('Java', '1.8.0_144')] + +sanity_check_paths = { + 'files': ['bin/spark-shell'], + 'dirs': ['python'] +} + +modextrapaths = {'PYTHONPATH': 'python'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SpiceyPy/SpiceyPy-1.1.1-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/s/SpiceyPy/SpiceyPy-1.1.1-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..e2776528bdd314fcb627b27ec2246ba391a45046 --- /dev/null +++ b/easybuild/easyconfigs/s/SpiceyPy/SpiceyPy-1.1.1-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,22 @@ +easyblock = 'PythonPackage' + +name = 'SpiceyPy' +version = '1.1.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/AndrewAnnex/SpiceyPy' +description = "SpiceyPy is a Python wrapper for the NAIF C SPICE Toolkit (N65)" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Python', '3.6.1')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/s/Spyder/Spyder-3.1.4-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/Spyder/Spyder-3.1.4-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..148b4a94d1a59ba25a61690409bedc9b5188d559 --- /dev/null +++ b/easybuild/easyconfigs/s/Spyder/Spyder-3.1.4-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,117 @@ +easyblock = 'Bundle' + +name = 'Spyder' +version = '3.1.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/spyder-ide/spyder' +description = """Spyder is an interactive Python development environment providing MATLAB-like features in a simple + and light-weighted software.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +dependencies = [ + ('Python', '2.7.13'), + ('PyQt5', '5.8.2', versionsuffix), + ('PyZMQ', '16.0.2', versionsuffix + '-zmq4'), +] + +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('qtconsole', '4.3.0', { + 'source_urls': ['https://pypi.python.org/packages/source/q/qtconsole'], + }), + ('rope', '0.10.5', { + 'source_urls': ['https://pypi.python.org/packages/source/r/rope'], + }), + ('jedi', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/j/jedi'], + }), + ('pyflakes', '1.5.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyflakes'], + }), + ('Sphinx', '1.6.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/Sphinx'], + }), + ('Pygments', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments'], + }), + ('pylint', '1.7.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pylint'], + }), + ('pep8', '1.7.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pep8'], + }), + ('psutil', '5.2.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/psutil'], + }), + ('ipython_genutils', '0.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/i/ipython_genutils/'], + }), + ('traitlets', '4.3.2', { + 'source_urls': ['https://pypi.python.org/packages/source/t/traitlets/'], + }), + ('jsonschema', '2.6.0', { + 'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'], + }), + ('nbformat', '4.3.0', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nbformat/'], + }), + ('configparser', '3.5.0', { + 'source_urls': ['https://pypi.python.org/packages/source/c/configparser/'], + 'patches': ['configparser-3.5.0_no-backports-namespace.patch'], + 'use_pip': True, + }), + ('entrypoints', '0.2.2', { + 'source_urls': ['https://pypi.python.org/packages/source/e/entrypoints/'], + 'source_tmpl': 'entrypoints-%(version)s-py2.py3-none-any.whl', + 'unpack_sources': False, + 'use_pip': True, + }), + ('pandocfilters', '1.4.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandocfilters/'], + }), + ('testpath', '0.3', { + 'source_urls': ['https://pypi.python.org/packages/py2.py3/t/testpath/'], + 'source_tmpl': 'testpath-%(version)s-py2.py3-none-any.whl', + 'unpack_sources': False, + 'use_pip': True, + }), + ('nbconvert', '5.1.1', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nbconvert'], + 'use_pip': True, + }), + ('QtAwesome', '0.4.4', { + 'source_urls': ['https://pypi.python.org/packages/source/Q/QtAwesome'], + 'prebuildopts': "rm -r qtawesome/tests/__pycache__ && ", + }), + ('pickleshare', '0.7.4', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pickleshare'], + }), + ('QtPy', '1.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/Q/QtPy'], + }), + ('chardet', '3.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/c/chardet'], + }), + ('numpydoc', '0.6.0', { + 'source_urls': ['https://pypi.python.org/packages/source/n/numpydoc'], + }), + (name.lower(), version, { + 'source_urls': ['https://pypi.python.org/packages/source/s/spyder'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/spyder'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Spyder/configparser-3.5.0_no-backports-namespace.patch b/easybuild/easyconfigs/s/Spyder/configparser-3.5.0_no-backports-namespace.patch new file mode 100644 index 0000000000000000000000000000000000000000..6deccec5e63c1766f51240c58e5d53b3a8da7d36 --- /dev/null +++ b/easybuild/easyconfigs/s/Spyder/configparser-3.5.0_no-backports-namespace.patch @@ -0,0 +1,31 @@ +don't let configparser define 'backports' namespace, since that interferes with other packaging that provide stuff in 'backports' + +patch obtained from https://github.com/NIXOS/nixpkgs/blob/master/pkgs/development/python-modules/configparser/0001-namespace-fix.patch +see also https://bitbucket.org/ambv/configparser/issues/17/importerror-when-used-with-other-backports +diff --git a/setup.py b/setup.py +index 3b07823..63ed25d 100644 +--- a/setup.py ++++ b/setup.py +@@ -42,7 +42,6 @@ setup( + py_modules=modules, + package_dir={'': 'src'}, + packages=find_packages('src'), +- namespace_packages=['backports'], + include_package_data=True, + zip_safe=False, + install_requires=requirements, +diff --git a/src/backports/__init__.py b/src/backports/__init__.py +index f84d25c..febdb2f 100644 +--- a/src/backports/__init__.py ++++ b/src/backports/__init__.py +@@ -3,9 +3,3 @@ + + from pkgutil import extend_path + __path__ = extend_path(__path__, __name__) +- +-try: +- import pkg_resources +- pkg_resources.declare_namespace(__name__) +-except ImportError: +- pass +-- diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.40-foss-2016a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.40-foss-2016a.eb index 197e799318ae826633c6354725790ba8b67ca015..cdb98a37f52509601d8bb175491644406db9b461 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.40-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.40-foss-2016a.eb @@ -15,8 +15,8 @@ source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('zlib', '1.2.8'), - ('SAMtools', '1.3.1'), + ('zlib', '1.2.8'), + ('SAMtools', '1.3.1'), ('sparsehash', '2.0.2'), ] diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.42-foss-2016a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.42-foss-2016a.eb index e042becab7ed989272fb91a5c85b43ac2c529a43..bb7e9baadc71e92b66b655cea97b8fde5c56db4a 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.42-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.42-foss-2016a.eb @@ -15,8 +15,8 @@ source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('zlib', '1.2.8'), - ('SAMtools', '1.3.1'), + ('zlib', '1.2.8'), + ('SAMtools', '1.3.1'), ('sparsehash', '2.0.2'), ] diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.44-foss-2016a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.44-foss-2016a.eb index 1df7d789c0aea115f59d5d31eb1edc9187287cd2..f99a6a428fc7f29c6e59186f042aa01e6c2e41e8 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.44-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.44-foss-2016a.eb @@ -15,8 +15,8 @@ source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('zlib', '1.2.8'), - ('SAMtools', '1.3.1'), + ('zlib', '1.2.8'), + ('SAMtools', '1.3.1'), ('sparsehash', '2.0.2'), ] diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.45-foss-2016a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.45-foss-2016a.eb index 4f24751d68768efec19062ded0317f0f1a5910d4..116c79b992f9302bb18dcb050368bd70696f3341 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.45-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.45-foss-2016a.eb @@ -15,8 +15,8 @@ source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('zlib', '1.2.8'), - ('SAMtools', '1.3.1'), + ('zlib', '1.2.8'), + ('SAMtools', '1.3.1'), ('sparsehash', '2.0.2'), ] diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.46-intel-2017a.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.46-intel-2017a.eb index 341b4db710aea32ffb799717d365367da08cf4d1..4509b19211caad0374852938a05d47d9b10c7bf9 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.46-intel-2017a.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.46-intel-2017a.eb @@ -15,8 +15,8 @@ source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('zlib', '1.2.11'), - ('SAMtools', '1.4'), + ('zlib', '1.2.11'), + ('SAMtools', '1.4'), ('sparsehash', '2.0.3'), ] diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index df639eb5dc896a990d7a1bf95fc5f07f3c647023..ab80ccc5bde5e7190829b540731174a53d46cb06 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 43fedd4e90594fcf5df82a1687af5ef14a4a0280..4a0685460a012594226dae279176e1971c30bce1 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb index f2c6a5db74d25128e912fa05ba105c13473c0132..0d9f6439b27018c42bdbfa247af537167fca47e5 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb index 69634c30e6ad8b812118421f021606c127fbdf0e..6f1084f664a1dfc4ce11d70ac5b56d5d29ab6acf 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.0-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8347d427b4a85fe7014575f7f23f35d30b617708 --- /dev/null +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'StringTie' +version = '1.3.3' + +homepage = 'http://ccb.jhu.edu/software/stringtie/' + +description = """ + StringTie is a fast and highly efficient assembler of RNA-Seq alignments + into potential transcripts. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://ccb.jhu.edu/software/stringtie/dl/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c01b16a681dc55f114dbfc2fcd725f615b2d9a79058ff8c110047cfa9cbe2976'] + +builddependencies = [ + ('binutils', '2.28'), +] + +files_to_copy = [(['stringtie'], 'bin'), 'README', 'LICENSE'] + +sanity_check_paths = { + 'files': ['bin/stringtie'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb index 2476496f2d911a030954c704d4736da1eb04ae42..0d4e070e86a424aff1b3e757911062201c773bb2 100644 --- a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3-intel-2017a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3924753a7951990e1b65f4581db2f6f353e0a24d --- /dev/null +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.3.3b-foss-2016b.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'MakeCp' + +name = 'StringTie' +version = "1.3.3b" + +homepage = 'http://ccb.jhu.edu/software/stringtie/' +description = """StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://ccb.jhu.edu/software/stringtie/dl/'] +sources = [SOURCELOWER_TAR_GZ] + +checksums = ['8f9ed07ff532a0641cd04b23e27eb547'] + +files_to_copy = [(['stringtie'], 'bin'), 'README', 'LICENSE'] + +sanity_check_paths = { + 'files': ['bin/stringtie'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb index 612c514399d551d78cb161032f962944f479ac10..ca748e8873e2ad59fe3d809076d5817263c18222 100644 --- a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb +++ b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb index e525a015c81350f03cc3ebe31807e95b770d5bf7..3ea35d4e6efa19bcabc1fa578186d3963ca35c6d 100644 --- a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb +++ b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb index ecdac2f7d2a7fdca54c47212898ab53d673253df..baebc0d9898ed5951cd70cbf50c4898bd1c943c9 100644 --- a/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb +++ b/easybuild/easyconfigs/s/Subread/Subread-1.5.0-p1-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute easyblock = 'MakeCp' diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.5.5-foss-2017a-METIS-5.1.0.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.5.5-foss-2017a-METIS-5.1.0.eb index 4727d14749d15be4824c8cc6464baeb87b109488..e63d1a798f3f144c1371af98bc1b5727967fd14b 100644 --- a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.5.5-foss-2017a-METIS-5.1.0.eb +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.5.5-foss-2017a-METIS-5.1.0.eb @@ -17,4 +17,3 @@ dependencies = [('METIS', metis_ver)] maxparallel = 1 moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..51caf7745bd24ac69cf850bce4e0abeff2fbb7c7 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCCcore-5.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +builddependencies = [('binutils', '2.26', '', True)] + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb index 9365662b36f8c416781be36d9ebe968577da2f28..7be82daa90cc90fe62be4ce7ab16ab93249cc998 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2017a.eb @@ -21,4 +21,3 @@ sanity_check_paths = { } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..be905d9536c16dc452d75c3e3d2f0e866f2bab70 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gimkl-2017a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'gimkl', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..98b8e0cf482460af3b507d991a28792f7727eec1 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1.1-GCCcore-6.4.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' + +description = """ + Szip compression software, providing lossless compression of scientific data +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['897dda94e1d4bf88c91adeaad88c07b468b18eaf2d6125c47acac57e540904a9'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb b/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb index a99c1c09125d6262ca110a974a815b1ba5ab1cfc..3f53f0997abc50ec174302fe1d81e9e3dac43a87 100644 --- a/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/samblaster/samblaster-0.1.24-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -17,10 +17,10 @@ source_urls = ['https://github.com/GregoryFaust/samblaster/archive/'] sources = ['v.%(version)s.tar.gz'] files_to_copy = [ - (['samblaster'], 'bin/'), - 'README.md', - 'SAMBLASTER_Supplemental.pdf', - 'LICENSE.txt', + (['samblaster'], 'bin/'), + 'README.md', + 'SAMBLASTER_Supplemental.pdf', + 'LICENSE.txt', ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.18.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.18.1-intel-2017a-Python-2.7.13.eb new file mode 100755 index 0000000000000000000000000000000000000000..388e0e3afa8f588d78971c2d88b9a6b44c49d99a --- /dev/null +++ b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.18.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'scikit-learn' +version = '0.18.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://scikit-learn.org/stable/index.html' +description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, +building upon numpy, scipy, and matplotlib. As a machine-learning module, +it provides versatile tools for data mining and analysis in any field of science and engineering. +It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.13'), + ('matplotlib', '2.0.2', versionsuffix), +] + +options = {'modulename': 'sklearn'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/sklearn'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.18.2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.18.2-intel-2017a-Python-3.6.1.eb new file mode 100755 index 0000000000000000000000000000000000000000..680d9601f6f9e2e66fc8cf8b3a6f13db0e6a59b1 --- /dev/null +++ b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.18.2-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'scikit-learn' +version = '0.18.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://scikit-learn.org/stable/index.html' +description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, +building upon numpy, scipy, and matplotlib. As a machine-learning module, +it provides versatile tools for data mining and analysis in any field of science and engineering. +It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '3.6.1'), + ('matplotlib', '2.0.2', versionsuffix + '-libpng-1.6.29'), +] + +options = {'modulename': 'sklearn'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/sklearn'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb index 0c7b7b159e226748d5c4c0a5fc2ac850d48cf2c2..beef8b39ecc331e14ca5ab6ae017d7a2127c7781 100644 --- a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..09a2f081e9294cb93f4dba4aac5ff626583eef7c --- /dev/null +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-foss-2016b.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +easyblock = 'MakeCp' + +name = "segemehl" +version = "0.2.0" + +homepage = 'http://www.bioinf.uni-leipzig.de/Software/segemehl/' +description = """ segemehl is a software to map short sequencer reads to reference genomes. + Unlike other methods, segemehl is able to detect not only mismatches but also insertions + and deletions. Furthermore, segemehl is not limited to a specific read length and is able + to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching + strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads + gziped queries to save both disk and memory space and allows bisulfite sequencing mapping + and split read mapping. """ + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['http://www.bioinf.uni-leipzig.de/Software/segemehl/'] +sources = ['%s_%s.tar.gz' % (name, version.replace('.', '_'))] + +checksums = ['fef4db00ed2742a2bf4131eed674bb08'] + +parallel = 1 + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), +] + +files_to_copy = [(["lack.x", "segemehl.x", "testrealign.x"], "bin")] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["lack.x", "segemehl.x", "testrealign.x"]], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb index a9245a0b765630c5682a1b4540d3fb69fb4171ce..beeb661537eb44e4612ffb61a21b37acd21c0feb 100644 --- a/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.2.0-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/seqtk/seqtk-1.2-intel-2017a.eb b/easybuild/easyconfigs/s/seqtk/seqtk-1.2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d6c74b18dc297564d348b39591f13d5f1ff61816 --- /dev/null +++ b/easybuild/easyconfigs/s/seqtk/seqtk-1.2-intel-2017a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'seqtk' +version = '1.2' + +homepage = 'https://github.com/lh3/seqtk/' +description = """Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. + It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/lh3/seqtk/archive/'] + +buildopts = 'CC="$CC" CFLAGS="$CLFAGS"' + +files_to_copy = ["seqtk"] + +sanity_check_paths = { + 'files': files_to_copy, + 'dirs': [], +} + +modextrapaths = { + 'PATH': [''], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..9b5a4054e167e6d1bc3bfc8e1f202228ac75ce12 --- /dev/null +++ b/easybuild/easyconfigs/s/setuptools/setuptools-36.2.0-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'setuptools' +version = '36.2.0' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'http://pypi.python.org/pypi/setuptools/' + +description = """ + Download, build, install, upgrade, and uninstall Python packages -- easily! +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] +checksums = ['4c2bda3829c9dbbe9c2b33d89c4b1cb6d45813615ab8e248ad352e3697a96d81'] + +builddependencies = [ + ('Python', pyver, pysubver), +] + +pylibdir = "lib/python%s/site-packages/%s" % (pyshortver, name) +sanity_check_paths = { + 'files': ["bin/easy_install", "%s-%s-py%s.egg" % + (pylibdir, version, pyshortver)], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/sharutils/sharutils-4.15-GCCcore-6.3.0.eb b/easybuild/easyconfigs/s/sharutils/sharutils-4.15-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..06f3fc97f7e1767872688e26641dedea12fe44b1 --- /dev/null +++ b/easybuild/easyconfigs/s/sharutils/sharutils-4.15-GCCcore-6.3.0.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'sharutils' +version = '4.15' + +homepage = 'https://www.gnu.org/software/sharutils/' +description = """GNU shar makes so-called shell archives out of many files, preparing them for transmission by + electronic mail services, while unshar helps unpacking shell archives after reception.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.27', '', True)] + +sanity_check_paths = { + 'files': ['bin/shar', 'bin/uudecode', 'bin/uuencode', 'bin/unshar'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb b/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb index a2500b9e047a4001fc7382f44908ef689f418edc..bc93dbaa1d0bcf858ff4b110acf25c4a0692a41d 100644 --- a/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb +++ b/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb b/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..f5345426c3642e3491f0d474183f3c52d5596cf9 --- /dev/null +++ b/easybuild/easyconfigs/s/six/six-1.10.0-GCCcore-6.4.0-Python-2.7.13-bare.eb @@ -0,0 +1,31 @@ +# Author:: Jack Perdue - TAMU HPRC - http://sc.tamu.edu + +easyblock = 'PythonPackage' + +name = 'six' +version = '1.10.0' +pyver = '2.7.13' +pyshortver = '2.7' +pysubver = '-bare' +versionsuffix = '-Python-%s%s' % (pyver, pysubver) + +homepage = 'https://pypi.python.org/pypi/six/1.10.0' + +description = "Python 2 and 3 compatibility utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_LOWER_SOURCE] +checksums = ['105f8d68616f8248e24bf0e9372ef04d3cc10104f1980f54d57b2ce73a5ad56a'] + +builddependencies = [ + ('Python', pyver, pysubver), +] + +sanity_check_paths = { + 'files': ['lib/python%s/site-packages/%%(name)s.py' % pyshortver], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..51eeeb84910eb8758b8dcff255bcb695ac8c0817 --- /dev/null +++ b/easybuild/easyconfigs/s/skewer/skewer-0.2.2-goolf-1.7.20.eb @@ -0,0 +1,30 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'skewer' +version = '0.2.2' + +homepage = 'https://github.com/relipmoc/skewer' +description = """skewer (transferred from https://sourceforge.net/projects/skewer) implements the + bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is + specially designed for processing next-generation sequencing (NGS) paired-end sequences""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['https://github.com/relipmoc/skewer/archive/'] +sources = ['%(version)s.tar.gz'] + +buildopts = 'CXX="$CXX" CXXFLAGS="-c $CXXFLAGS" LDFLAGS="$CXXFLAGS -pthread"' + +files_to_copy = [(['skewer'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/skewer'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/sleuth/sleuth-0.29.0-intel-2017a-R-3.4.0.eb b/easybuild/easyconfigs/s/sleuth/sleuth-0.29.0-intel-2017a-R-3.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..aba646221e644e4d06fd8d759b61991235ec6363 --- /dev/null +++ b/easybuild/easyconfigs/s/sleuth/sleuth-0.29.0-intel-2017a-R-3.4.0.eb @@ -0,0 +1,25 @@ +easyblock = 'RPackage' + +name = 'sleuth' +version = '0.29.0' +versionsuffix = '-R-%(rver)s' + +homepage = 'http://pachterlab.github.io/sleuth' +description = """Investigate RNA-Seq transcript abundance from kallisto and perform differential expression analysis.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/pachterlab/sleuth/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('R', '3.4.0', '-X11-20170314'), + ('R-bundle-Bioconductor', '3.5', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': [name], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb b/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb index 585ebb993230e094e50238e611eca8acef958295..306703a33f1da72e816c544b2b570e86be6375b2 100644 --- a/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb +++ b/easybuild/easyconfigs/s/splitRef/splitRef-0.0.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -25,7 +25,7 @@ sanity_check_paths = { } # add folder splitRef_V002 to PATH -modextrapaths = { +modextrapaths = { 'PATH': '%s_V%s' % (name, altver) } diff --git a/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb b/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb index b3d358e4a359acbc21736f5b9e72a5ee25813c56..adcf73dd1b49185e81f6d6740834885cba6aa7b5 100644 --- a/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb +++ b/easybuild/easyconfigs/s/sratoolkit/sratoolkit-2.5.7.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # adam.huffman@crick.ac.uk diff --git a/easybuild/easyconfigs/s/statsmodels/statsmodels-0.6.1-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/s/statsmodels/statsmodels-0.6.1-intel-2016b-Python-3.5.2.eb index 435f33a3bd0cb81d02f95e92268395a8c673edf2..484c222815bb065d06e8985d8f445fd84038a8d4 100644 --- a/easybuild/easyconfigs/s/statsmodels/statsmodels-0.6.1-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/s/statsmodels/statsmodels-0.6.1-intel-2016b-Python-3.5.2.eb @@ -21,7 +21,7 @@ exts_list = [ 'source_tmpl': 'patsy-%(version)s.zip', }), (name, version, { - 'source_urls': ['https://pypi.python.org/packages/sources/statsmodels'], + 'source_urls': ['https://pypi.python.org/packages/source/statsmodels'], 'source_tmpl': 'statsmodels-%(version)s.zip', }), ] diff --git a/easybuild/easyconfigs/s/statsmodels/statsmodels-0.8.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/s/statsmodels/statsmodels-0.8.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..85483b000553e668f72f17f8027d18b8e555a138 --- /dev/null +++ b/easybuild/easyconfigs/s/statsmodels/statsmodels-0.8.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,36 @@ +easyblock = 'Bundle' + +name = 'statsmodels' +version = '0.8.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://statsmodels.sourceforge.net/' +description = """Statsmodels is a Python module that allows users to explore data, estimate statistical models, +and perform statistical tests.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [('Python', '2.7.13')] + +exts_list = [ + ('patsy', '0.4.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/patsy'], + 'source_tmpl': 'patsy-%(version)s.zip', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/statsmodels'], + 'source_tmpl': 'statsmodels-%(version)s.tar.gz', + }), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb b/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb index e91ebd2437620657b9837671eda231bf43f0461d..004ae316932e0e9d7bdd5c76e86971b4817afc54 100644 --- a/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/stress/stress-1.0.4-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb b/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb index f056af2b4f5cdf4d06bbcf67b640b3e02f6a919a..56b9997a88914d2a0b14b279e338b969ce2802a0 100644 --- a/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb +++ b/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Author: Adam Huffman # The Francis Crick Institute diff --git a/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb b/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb index 72a246892c2acc7d5f6654c928441ff54d7342eb..211ff82a357ac07cc12ba587585bc1d56bd55c84 100644 --- a/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/TAU/TAU-2.22.2-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index c502d5385e3f361b41852ef622e04b093d66ee70..e97300a69cd1fd04d8b5b373b6c95aa6bd7cd308 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb index c6409b2a072bf7a82dcacb86f3817b2bec0f17dc..3ffa16eea4990561c89fe116831b543244213bf7 100644 --- a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb index 69b3b4ca40e0c7fce4c3078e0926bd0c4a45142e..d39813bb2eab67e44418871e9b001c7bd8223672 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Authors:: Thekla Loizou diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb index 20133db9039806621ceacdac438793d67860138a..7791f62bfc948c813dc1b524e25209d7020a1308 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC # Author:: Thekla Loizou diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.19-foss-2017a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.19-foss-2017a.eb index 0514b4e68241ac03378224b0d64384ef876cf91c..91e78ce92823f71578451c9e869101c50622ce76 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.19-foss-2017a.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.19-foss-2017a.eb @@ -24,4 +24,3 @@ runtest = 'test' start_dir = 'unix' moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.5-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.5-iccifort-2016.3.210-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..d9890f701783187b0168aa47e54e164e8fd5ca37 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.5-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.5' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, +testing and many more.""" + +toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cffeed4270993c30bf744acf67481c1b5a8bc82c --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.6-GCCcore-6.4.0.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.6' + +homepage = 'http://www.tcl.tk/' + +description = """ + Tcl (Tool Command Language) is a very powerful but easy to learn dynamic + programming language, suitable for a very wide range of uses, including web + and desktop applications, networking, administration, testing and many more. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] +checksums = ['a265409781e4b3edcc4ef822533071b34c3dc6790b893963809b9fe221befe07'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('zlib', '1.2.11'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +sanity_check_paths = { + 'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'include/tcl.h', + 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT, + 'lib/tclConfig.sh', 'man/man1/tclsh.1'], + 'dirs': ['share'], +} + + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-2.7.12.eb index b94ca618c9b8f2aa9bb1ad005adc55ae135d1ad8..3dc06f1df1e503ac59daf7b239fdb2dede9a611b 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-2.7.12.eb @@ -13,7 +13,7 @@ pymaj = '2' pymin = '7' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/7e/c6/837f4e249aae5c86a632eaaa9779e601eca1487772f8ad75c347bf9e813f/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)smu-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-3.5.2.eb index d8b29474228f408421e81d904836b0c2db25ce40..6dc066128be7bd86f4bf8a4a82917a74ff2eaaf6 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-foss-2016b-Python-3.5.2.eb @@ -13,7 +13,7 @@ pymaj = '3' pymin = '5' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/e5/5c/56e6522fdcd6f8739dcbc4de62e8b0040e141785bb42e5b53a83b0ba3e58/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)sm-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-2.7.12.eb index 8ccd735bee54751a955b581e11869adfacc41c57..c374b3a8a7ad1d61ee199047c2e3f05ac539f536 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-2.7.12.eb @@ -13,7 +13,7 @@ pymaj = '2' pymin = '7' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/7e/c6/837f4e249aae5c86a632eaaa9779e601eca1487772f8ad75c347bf9e813f/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)smu-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-3.5.2.eb index 4898d79427ad87e87974a7aae531a42948ffbc72..bbe2973b536fb194de975a9db1ab576b1555243b 100644 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-0.12.1-intel-2016b-Python-3.5.2.eb @@ -13,7 +13,7 @@ pymaj = '3' pymin = '5' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/e5/5c/56e6522fdcd6f8739dcbc4de62e8b0040e141785bb42e5b53a83b0ba3e58/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)sm-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-2.7.12.eb index f1c3f15e89395b55da9b672a76f3222297f8a2c5..d6e4c6cbb382582c9adfacbf2266ee2ebddc3c5c 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-2.7.12.eb @@ -13,7 +13,7 @@ pymaj = '2' pymin = '7' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/7e/7c/f398393beab1647be0a5e6974b8a34e4ea2d3cb7bd9e38bd43a657ed27d1/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)smu-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-3.5.2.eb index 42b703619c8541ff9636f2d13f595d6aeacf9ae4..293d4b85579ac7b250b29444ce48bd7999a1f78c 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.0.1-intel-2016b-Python-3.5.2.eb @@ -13,7 +13,7 @@ pymaj = '3' pymin = '5' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/1f/38/c255432f18005362dd2459e3bff2b2411eb7d02ca09fa20ee1dd1311f69f/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)sm-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-2.7.13.eb index a6aec94f185e1299f18b91531fe64f176d787ecb..c3e49d93e0c28a83aeb20f12d04b6b0d74f70ace 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-2.7.13.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-2.7.13.eb @@ -13,7 +13,7 @@ pymaj = '2' pymin = '7' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/8a/73/74c610decd5e0a1fd7f441a32e3561d21c28ced98fd6d3d9d5c70dbf92ce/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)smu-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-3.6.1.eb index f134b5be2b30a704bd140a5c96a67d6c5b66ab8c..1dd71b4078230e8f3d26205fd8685bbcff4e56eb 100755 --- a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-3.6.1.eb +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.1.0-intel-2017a-Python-3.6.1.eb @@ -13,7 +13,7 @@ pymaj = '3' pymin = '6' pymajmin = pymaj + pymin -source_urls = ['https://pypi.python.org/packages/cd/e4/b2a8bcd1fa689489050386ec70c5c547e4a75d06f2cc2b55f45463cd092c/'] +source_urls = [PYPI_SOURCE] sources = [ 'tensorflow-%%(version)s-cp%(pymajmin)s-cp%(pymajmin)sm-manylinux1_x86_64.whl' % {'pymajmin': pymajmin}, ] diff --git a/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.0-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.0-intel-2017a-Python-3.6.1.eb new file mode 100755 index 0000000000000000000000000000000000000000..b53e9967d6c8f4533f67fe6a7f6ace83b1faf73f --- /dev/null +++ b/easybuild/easyconfigs/t/Tensorflow/Tensorflow-1.2.0-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,48 @@ +easyblock = 'Bundle' + +name = 'Tensorflow' +version = '1.2.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://www.tensorflow.org/' +description = "An open-source software library for Machine Intelligence" + +toolchain = {'name': 'intel', 'version': '2017a'} + +pymaj = '3' +pymin = '6' +pyver = pymaj + pymin + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' + +dependencies = [ + ('Python', '%s.%s.1' % (pymaj, pymin)), + ('protobuf-python', '3.3.0', versionsuffix), +] + +exts_list = [ + ('backports.weakref', '1.0rc1', { + 'modulename': 'backports.weakref', + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.weakref'], + }), + ('tensorflow', version, { + 'source_urls': ['https://pypi.python.org/packages/source/t/tensorflow'], + 'source_tmpl': 'tensorflow-%%(version)s-cp%(pyver)s-cp%(pyver)sm-manylinux1_x86_64.whl' % {'pyver': pyver}, + 'checksums': ['a3835274cddd9c5b5a752e39b34c31a2d3d80e0ebcb5488e2dafaf3d614391d1'], + 'use_pip': True, + 'unpack_sources': False, + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/tensorboard'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index af40f4958d0f9864063f929972bae0f1a58e349e..e759c8ef9892ad7ff4311d1edc64fe3e8f8f5162 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/Theano/Theano-0.9.0-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/t/Theano/Theano-0.9.0-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..6119fbb5768fce8483c75364f3b31d41e5075573 --- /dev/null +++ b/easybuild/easyconfigs/t/Theano/Theano-0.9.0-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'Theano' +version = '0.9.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://deeplearning.net/software/theano' +description = """Theano is a Python library that allows you to define, optimize, +and evaluate mathematical expressions involving multi-dimensional arrays efficiently.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': ['bin/theano-cache', 'bin/theano-nose'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.5-iccifort-2016.3.210-GCC-5.4.0-2.26.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.5-iccifort-2016.3.210-GCC-5.4.0-2.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f81a41effd21df2e5d81258ea3c31a3ce35fddd --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.5-iccifort-2016.3.210-GCC-5.4.0-2.26.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.5' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for + building a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'iccifort', 'version': '2016.3.210-GCC-5.4.0-2.26'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +patches = ['Tk-8.6.4_different-prefix-with-tcl.patch'] + +dependencies = [ + ('Tcl', version), + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tkinter/Tkinter-2.7.13-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/t/Tkinter/Tkinter-2.7.13-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..a9547d301476b4389cd742ec1fd613bfada1fc2a --- /dev/null +++ b/easybuild/easyconfigs/t/Tkinter/Tkinter-2.7.13-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,19 @@ +name = 'Tkinter' +version = '2.7.13' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://python.org/' +description = """Tkinter module, built with the Python buildsystem""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/python/%(version)s/'] +sources = ['Python-%(version)s.tgz'] + +dependencies = [ + ('Python', '2.7.13'), + ('Tk', '8.6.6'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb index 063b42af9e5fb265d2765c09595a16c7d72da021..febb5f6fbb399d76d46cdd4c450b1829c9908198 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb index d99d70b100c2417eddd9b9f880f16acc2a59ca79..43d3b55138099d70c5505f24b5f88d417ab36caf 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.13-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb index 6743572399208ab0950369ed77f5e3a8357cfc1a..63c44a4d0f6ee91ac8542fc46818b13dc4aae8a1 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.14-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index 0136815261d9c05c76ad661330b9747aefb119a2..22225c98c388d9af821f7a41a5643a64b348efa9 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index dff35b1d3f294222d327bfbf6f8e11d4484cb4d4..c3104a01d24f855c356eb6b4c7b4cdb6253e08a6 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index 5890c30330194bec2e93449b9e82edd72be73e87..30a6d4d9a9e327c58c2ba44b7de6e0b60ccd5645 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index 60dbbd04a50670d9d84f04b10351d86f7253783a..900fa70d9e7fb8119f2eb033dce970cecfeca72f 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb index f7aede356f066cfdbb30b0db03f8bf477709ae6d..41077a3e9836f98e06e4cececde7d675fcc58f32 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.0-intel-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb index 3bdcb05552a28ff6719346f1cdbed3c892d558c7..2dd3fe0d6e8848cd620d96753c56baf0fa6b0ce1 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2015b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb index bf3b1885b25cc80841cba85486c562439ad257f3..e3d8f194e2291295a7da2ceefdbc07ffafd4a893 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f3a9590faf9070b1ee9585db8ea7fa1aceeb7e91 --- /dev/null +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-intel-2017a.eb @@ -0,0 +1,41 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'TopHat' +version = '2.1.1' + +homepage = 'http://ccb.jhu.edu/software/tophat/' +description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'cstd': 'c++11'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] + +patches = [ + 'tophat-2.0.13-zlib.patch', + 'TopHat-2.1.1_fix-templating-error.patch', +] + +dependencies = [ + ('Boost', '1.64.0'), + ('zlib', '1.2.11'), +] + +configopts = '--with-boost=$EBROOTBOOST' + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/tophat'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1_fix-templating-error.patch b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1_fix-templating-error.patch new file mode 100644 index 0000000000000000000000000000000000000000..0abcfeeb268d5fd1999d2521e47b4b27c293b8de --- /dev/null +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.1.1_fix-templating-error.patch @@ -0,0 +1,13 @@ +fix templating compilation error, let type inference do its job +authors: Kenneth Hoste (HPC-UGent), Ward Poelmans (VUB) +--- tophat-2.1.1/src/tophat_reports.cpp.orig 2017-05-16 11:24:21.776900497 +0200 ++++ tophat-2.1.1/src/tophat_reports.cpp 2017-05-16 11:25:31.958523978 +0200 +@@ -2705,7 +2705,7 @@ + junction_stat.gtf_match = true; + junction_stat.accepted = true; + +- gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); ++ gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); + } + } + fprintf(stderr, "Loaded %d GFF junctions from %s.\n", (int)(gtf_junctions.size()), gtf_juncs.c_str()); diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb index edea937fc8bc36a5ab34068f5c8d5b45c2216ca3..2994b5477402a576155e6aea8a65efdea057e376 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb index 7af5c3b6cd9baee3dc8cf220e85841009c9c2dd7..b17b02345e760e7824bec5b19d843b36bc55a712 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb index 69f8803b05b01c73d16eed75a020e6ae1fd8ea04..2a37a8ab132a3b4dacb35c609fa671d9838511e9 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild recipy as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-foss-2016b.eb b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..ed3b6794101bddba64f7d7479c332560db9177c2 --- /dev/null +++ b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.4.4-foss-2016b.eb @@ -0,0 +1,33 @@ +# 0.4.2 modified by: +# Adam Huffman +# The Francis Crick Institute +# TODO: deal with the hardcoding of /usr/bin/perl + +easyblock = "PackedBinary" + +name = 'Trim_Galore' +version = '0.4.4' + +homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/' +description = """A wrapper tool around Cutadapt and FastQC to consistently apply + quality and adapter trimming to FastQ files, with some extra functionality for + MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = ['%(namelower)s_v%(version)s.zip'] +source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] + +install_cmd = "cp -a * %(installdir)s && chmod +x %(installdir)s/%(namelower)s" + +dependencies = [ + ('FastQC', '0.11.5', '-Java-1.7.0_80', True), + ('cutadapt', '1.9.1', '-Python-2.7.12'), +] + +sanity_check_paths = { + 'files': ["trim_galore"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb b/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb index 091f914cb3b0491a2352f53bf000318eb65d9478..bcb8cdfed46ef9e0250e1486e3e874b99a4f0fde 100644 --- a/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/t/Trimmomatic/Trimmomatic-0.32-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb index 1f448f04b91840bdb1ad1eecfb5232ea0f4ebe55..821333d6ef71e9bdbba2e200b07f5dbbef503385 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb index 30e64b353f604b806efe2b751dad742dd0f658f8..014e8ca4110e76efa96c23c22e3d2ac29eca0e83 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb index 181142b3dbf262d701260a5ea6083c1357ff3922..b4e2affc990df94877dd64f3e9aec68e94bcec95 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.2.0-foss-2016a.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c700a10e0677bb05af9fb4c9d83cd41ebab179ca --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.4.0-foss-2017a.eb @@ -0,0 +1,33 @@ +name = 'Trinity' +version = '2.4.0' + +homepage = 'http://trinityrnaseq.github.io' +description = """Trinity represents a novel method for the efficient and robust de novo reconstruction + of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, + Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" +toolchain = {'name': 'foss', 'version': '2017a'} +toolchainopts = {'optarch': True} + +source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] +sources = ['%(name)s-v%(version)s.tar.gz'] +checksums = ['2e91ed242923205b060164398aa325e5fe824040732d86c74ece4f98d7a6f220'] + +patches = [ + 'chrysalis_commandline_noconsts_2012-10-05.patch', +] + +builddependencies = [ + ('Autotools', '20150215', '', ('GCCcore', '6.3.0')), +] + +dependencies = [ + ('Java', '1.8.0_121', '', True), + ('ant', '1.10.1', '-Java-%(javaver)s', True), + ('Bowtie', '1.1.2'), + ('Bowtie2', '2.3.2'), + ('ncurses', '6.0'), + ('zlib', '1.2.11'), + ('Perl', '5.24.1'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb index e138adfe4c6b7496064bccfb7ca248be6d4c0366..6169c8b9f9b08dac0c999ff5b8040d228057842f 100644 --- a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb index af291cd25c46c9ada3c7e5365a6a760e46e7bb4b..beb5e691d004bba797041b69d0a714fbf1799192 100644 --- a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb +++ b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2014b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb index ef8197538da889d177f6306c1e7f16992ea21b36..6524a384882c43a89167df143a27b2136cd598b7 100644 --- a/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb +++ b/easybuild/easyconfigs/t/tabix/tabix-0.2.6-intel-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017.2.132.eb b/easybuild/easyconfigs/t/tbb/tbb-2017.2.132.eb index c81d846fcaaf18586fd01c2976eb3daaea17771e..c472a12964072e332c9f016254ad3704e8c489a5 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-2017.2.132.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-2017.2.132.eb @@ -2,7 +2,7 @@ name = 'tbb' version = '2017.2.132' homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' -description = """Intel Threading Building Blocks 4.0 (Intel TBB) +description = """Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017.4.174.eb b/easybuild/easyconfigs/t/tbb/tbb-2017.4.174.eb index 925ecf0fc93baa01b4915ead1bf46d1a65262601..3644e3125eb68968b2cce41efce13097dcb8e923 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-2017.4.174.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-2017.4.174.eb @@ -2,7 +2,7 @@ name = 'tbb' version = '2017.4.174' homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' -description = """Intel Threading Building Blocks 4.0 (Intel TBB) +description = """Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017.6.196.eb b/easybuild/easyconfigs/t/tbb/tbb-2017.6.196.eb new file mode 100644 index 0000000000000000000000000000000000000000..8156aab23b422a7c94d1c9b36a565d6a2e96e1eb --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2017.6.196.eb @@ -0,0 +1,25 @@ +name = 'tbb' +version = '2017.6.196' + +homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' + +description = """ + Intel Threading Building Blocks (Intel TBB) is a widely used, + award-winning C++ template library for creating reliable, portable, and + scalable parallel applications. Use Intel TBB for a simple and rapid way + of developing robust task-based parallel applications that scale to available + processor cores, are compatible with multiple environments, and are easier to + maintain. Intel TBB is the most proficient way to implement future-proof + parallel applications that tap into the power and performance of multicore + and manycore hardware platforms. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_tbb_%(version)s.tgz'] + +requires_runtime_license = False + +dontcreateinstalldir = True + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c187512784193a05475aab35510e381da7fce8a0 --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U5-foss-2016b.eb @@ -0,0 +1,17 @@ +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild + +name = 'tbb' +version = '2017_U5' + +homepage = 'https://01.org/tbb/' +description = """Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that + take full advantage of multicore performance, that are portable, composable and have future-proof scalability.""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +source_urls = ['https://github.com/01org/tbb/archive/'] +sources = ['%(version)s.tar.gz'] + +checksums = ['780baf0ad520f23b54dd20dc97bf5aae4bc562019e0a70f53bfc4c1afec6e545'] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1b8ceddb15e7ff57283c1572437d5ff9d536cdb6 --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-GCCcore-6.3.0.eb @@ -0,0 +1,18 @@ +name = 'tbb' +version = '2017_U6' + +homepage = 'https://01.org/tbb/' +description = """Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that + take full advantage of multicore performance, that are portable, composable and have future-proof scalability.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['https://github.com/01org/tbb/archive/'] +sources = ['%(version)s.tar.gz'] +checksums = ['1f7df7af6045179a45eba9b5dfde74d185ee7f573328f103c137696f81e4ae5a'] + +builddependencies = [ + ('binutils', '2.27') +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/tbb/tbb-2017_U6-intel-2017a.eb b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9fd9a0ec5adc363d6c264f6c56fccfc6c549aa83 --- /dev/null +++ b/easybuild/easyconfigs/t/tbb/tbb-2017_U6-intel-2017a.eb @@ -0,0 +1,13 @@ +name = 'tbb' +version = '2017_U6' + +homepage = 'https://01.org/tbb/' +description = """Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that + take full advantage of multicore performance, that are portable, composable and have future-proof scalability.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/01org/tbb/archive/'] +sources = ['%(version)s.tar.gz'] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/tbb/tbb-4.0.0.233.eb b/easybuild/easyconfigs/t/tbb/tbb-4.0.0.233.eb index 276beb485d9639a3b211705143b3947dcc6da661..fe58ba8f6dc40383271b192491445e5f5e041f6d 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-4.0.0.233.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-4.0.0.233.eb @@ -2,7 +2,7 @@ name = 'tbb' version = '4.0.0.233' homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' -description = """Intel Threading Building Blocks 4.0 (Intel TBB) +description = """Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based diff --git a/easybuild/easyconfigs/t/tbb/tbb-4.0.5.339.eb b/easybuild/easyconfigs/t/tbb/tbb-4.0.5.339.eb index 88a0f193971e1466e3d32642829a8d7ce89eaa76..db524b240774f4d6849869acf37a1120edd6a1e2 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-4.0.5.339.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-4.0.5.339.eb @@ -2,7 +2,7 @@ name = 'tbb' version = '4.0.5.339' homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' -description = """Intel Threading Building Blocks 4.0 (Intel TBB) +description = """Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based diff --git a/easybuild/easyconfigs/t/tbb/tbb-4.3.6.211.eb b/easybuild/easyconfigs/t/tbb/tbb-4.3.6.211.eb index bf885c9389faba90db08eccc33e375048a363eaf..8f93bdda020b28d5fcb3623345ce443a737736df 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-4.3.6.211.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-4.3.6.211.eb @@ -2,7 +2,7 @@ name = 'tbb' version = '4.3.6.211' homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' -description = """Intel Threading Building Blocks 4.0 (Intel TBB) +description = """Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based diff --git a/easybuild/easyconfigs/t/tbb/tbb-4.4.2.152.eb b/easybuild/easyconfigs/t/tbb/tbb-4.4.2.152.eb index c5d8deaf1fc5a357d6c8e76740298f73298a8051..11fd6f658a3b0ae332e5501c0dd79ba4cf5ca1c3 100644 --- a/easybuild/easyconfigs/t/tbb/tbb-4.4.2.152.eb +++ b/easybuild/easyconfigs/t/tbb/tbb-4.4.2.152.eb @@ -2,7 +2,7 @@ name = 'tbb' version = '4.4.2.152' homepage = 'http://software.intel.com/en-us/articles/intel-tbb/' -description = """Intel Threading Building Blocks 4.0 (Intel TBB) +description = """Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb index bf01430fff3ad0c41391c6f5e5b1c146c475115d..09047308c7fc4ac37a6f84a4a9fe9eed9e6c0d80 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb index 57a30b1d872365cebb522bb347496687a21530e5..b79551e9301072bd9814a9172c22d22e09fb41ad 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb index 558feb75791db6ea3429c75de502bb7f638afe96..79fccb1726f39b7d873dc9d3b2450695de7644e0 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayIntel-2015.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb index 4b5f7237ff41083d2d456bc2eae3cb1bbc8daef7..20e7328d6bf50b6ec80272f1c7f2c7850fd8bacc 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb index a41413570718f14b94df20551bc451ec348e348b..a3d8189e6bd79b3151cc918203dbbc3cc6d240bf 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb index 5e7647f183055292f97422042fdc4a16a11f1662..2997563ac9ba223dafa82f8b2de7864c9cd14b3a 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb index 432a9ad37d900d4df9ec98470bf2d4049250c2c7..7adcf86b000ef725bb7dd3e04febda224249374a 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb index 648d6836c116ade2e1ac7b403725153f21694dc9..4cfdeaa84c3f81d56c58c3a1dd1946daccc5e68f 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb index 747d0991881ce58ee922f2a84f26179e1a2209b7..ba0c2dc9f5c6d07716f19704f03b9345dc3776ec 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb index ef7cef982f17551132450c2e3478cc7b8107c568..a1e7c5f53ceab90f9b23331220281d7ce21f73c8 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb index 4a02bab4b4f2a9264697256553e74937c6822ff2..3f9f04e15c1f207962ca20d5ae75aff0f59192f2 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.19.00-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb index 1413bb1d34fff1c40ada9d43dc2df254cf9c4c23..7522e28d255d7effe576178a86755eb9ee7ac2d3 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.20.00-GCCcore-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit # Authors:: Valentin Plugaru diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb index 72d80a88dd707be0846c79bda426158c3666e9bf..2ab471b81737d9b107883d8282f917340646e3b8 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb index 6769cda969032d32dfa09e419869846195d5a050..638cd3928b5c2dc611c447ee461c8209f0731914 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb index 13138db3b02a41b1abe082fa408b980361e3fa65..bec670c6aaf24459474333cae65ea65b908f3798 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb index 39dc1241a0bc16e2ae8c6ef9c5e78c254a1d040d..6aff879dc7e4ad3bef2171c945b1f29c7861b66e 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb index e773e384b2192dc1f1cb9637630a24b85e9ac034..432d91c01907e93da90b060fa16cf7afd2f8d1b9 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb index 964a50f27f8e5527bd2f10768014d2771cdcda43..4cb77bfe4a56f69b3bfda240a110707d46257979 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb index efdb4ae86f533759428bfd8dcc3a0d046bd46af7..b02471d4631ce940ec05f9cd7c649a92e609e776 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb index a1f9ee01f434a8fb89a1206d5b14d2d818e7a37c..72be70a029a6a118a3ac349a1ad7e5d1e7deb28d 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb index ae9bb8dae339bb4e1645b655c6788dd4d7f8a06a..318c851243e0d31b4316d8b6dba43b35be9161b2 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.20-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb index 0e89a4b4d60a782be26374d46d1b22f1e14ca3ad..70717c12c1d4062f4554b1a18ec2039bfb0e8824 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.24-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University # Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) diff --git a/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb b/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..91df69c67fba82743408700fb47e4c76e9511dd4 --- /dev/null +++ b/easybuild/easyconfigs/u/UNAFold/UNAFold-3.8-intel-2017a-Perl-5.24.1.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'UNAFold' +version = '3.8' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://mfold.rna.albany.edu/?q=DINAMelt/software' +description = """The UNAFold package contains several programs for performing energy minimization and partition + function calculations on nucleic acid sequences.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +checksums = ['f9392621762a74b02eb026caceb69568ea65b0cf0891ba25a805da721a90a275'] + +dependencies = [ + ('gnuplot', '5.0.6'), + ('Perl', '5.24.1'), +] + +sanity_check_paths = { + 'files': ['bin/concentration', 'bin/ct-energy', 'bin/hybrid', 'bin/hybrid2-min.pl', 'bin/sbs'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb index 27b08c5298d2607d1f5c5b6ef7380d7a2c608e6b..246ed0de3fed45612abe6952701ae3e8e225a992 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-foss-2016b.eb @@ -23,7 +23,10 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [('ncurses', '6.0')] +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), +] sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb index b5ac58a535cb6d5b633fe048a0a84f3d29d46889..c4419d6080edaee2908128abb8e643a5e56e7840 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29-intel-2016b.eb @@ -23,7 +23,10 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [('ncurses', '6.0')] +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.8'), +] sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5bf5c2a72487eddc097e8d1e9ca02d2568628671 --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-GCCcore-6.3.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.29.2' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = [ + '29ccdf91d2c3245dc705f0ad3bf729ac41d8adcdbeff914e797c552ecb04a4c7', # util-linux-2.29.2.tar.gz +] + +builddependencies = [ + ('binutils', '2.27'), +] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb index 3495ebee0c0a5ea6c6ed2e26e7df24d80d6b79a4..b79443655620b3f704193a29173ac8897977a10e 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.29.2-intel-2017a.eb @@ -23,7 +23,10 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet # disable building Python bindings (since we don't include Python as a dep) configopts += "--without-python " -dependencies = [('ncurses', '6.0')] +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] sanity_check_paths = { 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..64826e9aa5a5276a8b5983ed31c8981abca3b7db --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.30-GCCcore-6.4.0.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.30' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' + +description = "Set of Linux utilities" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['e84cc32566abf28b84efb5ee326e1f3597c3d19b9916740f50c75bd57e498ce0'] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('ncurses', '6.0'), + ('zlib', '1.2.11'), +] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb index 47c30351f2414f238b5137dfebf90e6114b0fcbd..fbb909422542e1cf6a3b694e0a746a752fd78862 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb index 1350a7b674dbb8883cbcfbf71b2067cf135e2888..d9afc1fbcdf35650a5ce163186913bddad651d1f 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb index 26093f8c38437f86d4f4069bc399e253d292d4b4..9ba6154d14783309f31d357f3a09abc6c3c1026c 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb index 9d1e642f258295a84534ae6d08780769174cbe21..c64bd42cd99f906cd813d00635a2b698b71743c1 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb index c7db740277d11437394f0a36467b49ba2dfe1a7c..a5698a5603a286476021fd897aa240e927e913bd 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2016a-Perl-5.22.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb index c4c82d2f79a5258fff6f6ad774b8fa4e7e8738ed..46e460924a9c7d31a2768988715f93a2bf2caa5c 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.4.10-Perl-5.16.3.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -19,15 +19,15 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [ ('Perl', '5.16.3'), -] +] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["vcftools", "fill-fs", "vcf-compare", "vcf-contrast", + 'files': ["bin/%s" % x for x in ["vcftools", "fill-fs", "vcf-compare", "vcf-contrast", "vcf-fix-ploidy", "vcf-merge"]], 'dirs': [], } -modextrapaths = { +modextrapaths = { 'PERL5LIB': 'lib/perl5/site_perl/', } diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb index 6a770e5ef19f4745b801575e3675d91bac66ce7e..d984b53e5f0db66a4c37b4100ded4fbeac2d8f12 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-goolf-1.7.20-Perl-5.22.2.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -19,15 +19,15 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [ ('Perl', '5.22.2'), -] +] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["vcftools", "fill-fs", "vcf-compare", "vcf-contrast", + 'files': ["bin/%s" % x for x in ["vcftools", "fill-fs", "vcf-compare", "vcf-contrast", "vcf-fix-ploidy", "vcf-merge"]], 'dirs': [], } -modextrapaths = { +modextrapaths = { 'PERL5LIB': 'lib/perl5/site_perl/', } diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb index 9f1d001bfa6fca2d25872aef5a1a7fe4688e6cff..08f1cb8b26f05394430857c99d06a66a9474bf08 100644 --- a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-intel-2016a-Perl-5.22.1.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb b/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb index 367fff56961428c99a2b009a51c0e81a65da05f7..ecaa08a9807f90c6c8bb69da705a3e7549699f2d 100644 --- a/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb +++ b/easybuild/easyconfigs/v/VEGAS/VEGAS-0.8.27.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Ravi Tripathi # Email: ravi89@uab.edu diff --git a/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb new file mode 100755 index 0000000000000000000000000000000000000000..6ef907ef1efded596f8c6f434a9e6455ce6130c9 --- /dev/null +++ b/easybuild/easyconfigs/v/VERSE/VERSE-0.1.5-foss-2016b.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY, as per https://github.com/easybuilders/easybuild +# Adam Huffman +# The Francis Crick Institute +easyblock = 'MakeCp' + +name = 'VERSE' +version = '0.1.5' + +homepage = 'https://github.com/qinzhu/VERSE' +description = """A versatile and efficient RNA-Seq read counting tool""" + +toolchain = {'name': 'foss', 'version': '2016b'} + +sources = [{ + 'filename': '%(name)s-%(version)s.zip', + 'download_filename': 'master.zip', # No proper release tarballs +}] + +source_urls = ['https://github.com/qinzhu/VERSE/archive'] + +buildopts = ' -f Makefile.Linux' + +start_dir = 'src' + +files_to_copy = [(['%(namelower)s'], 'bin'), 'LICENSE', 'readme.txt', 'update_log.txt', + '%(namelower)s_manual.html', 'testdata'] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s', 'readme.txt'], + 'dirs': ['testdata'] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb index 3e3df4bec479b2902698dd3cfa2824bc9ea73279..2f45c3f95b2d40d0e016c9091d6c4f6ba71cc4bc 100644 --- a/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VMD/VMD-1.9.3-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Authors:: Stephane Thiell ## name = 'VMD' @@ -10,7 +10,7 @@ homepage = 'http://www.ks.uiuc.edu/Research/vmd' description = """VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.""" -toolchain= {'name': 'intel' , 'version': '2016b'} +toolchain = {'name': 'intel', 'version': '2016b'} # downloading requires registration sources = ['vmd-%(version)s.src.tar.gz'] diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb index 8849734f1b32787fdb160ba4e2450d10657080d6..93686e2ec103c9eb8d4c46be5d37e483522f6af5 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index 45d8b25c17eeabd4d197b287083f91a63d02fd68..9bb845d1ba6bac5aa5266913e83d9c975b06312a 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb index 71edba0d68c65d32a7caef759763e63325972371..053267f953ef2f11eff4648e86caf1d0d2ec57d0 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-foss-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb index 94b031902b35b61e70bdf1066ac2f13ed6c8d846..4bb971d12b6067184b6402c612ad679de031436a 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb index e549b2e96326c874409b2ce4c326399c4afc2675..8128b35ee7ce01d8fbd47e90341af3b26db5a4a2 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016a-Python-2.7.11.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb index d63c30f413e02bc7aee49f60fc002f0416053ddd..164e61a3e9e4b31f60f0a64cce16c103ca244b74 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb index ce85c69cbd2c83caca5a2cbc964ffd084547a65d..ed12cc491a8ab547b979beaf038cd3bc9b5932d0 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-7.0.0-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb index ff2f4a0f6303c8defae0ca6b7d542fd5a6b39ecf..748919048ad8dadb801a98b93fddb5ce68666104 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-7.1.0-intel-2016b-Python-2.7.12.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..dffb09bfb69edd1182ec7a923cada6f08d7514f5 --- /dev/null +++ b/easybuild/easyconfigs/v/VTK/VTK-7.1.1-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,60 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## + +easyblock = 'CMakeMake' + +name = 'VTK' +version = '7.1.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.vtk.org' +description = """The Visualization Toolkit (VTK) is an open-source, freely available software system for + 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several + interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization + algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques + such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['http://www.vtk.org/files/release/%(version_major_minor)s'] +sources = [ + SOURCE_TAR_GZ, + '%(name)sData-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.8.0')] + +dependencies = [ + ('HDF5', '1.8.18'), + ('Python', '2.7.13'), + ('libGLU', '9.0.0'), + ('X11', '20170314'), +] + +configopts = "-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s " % SHLIB_EXT +configopts += "-DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s " % SHLIB_EXT +configopts += "-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DVTK_WRAP_PYTHON=ON " +configopts += "-DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython%%(pyshortver)s.%s " % SHLIB_EXT +configopts += " -DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python%(pyshortver)s " +preinstallopts = "mkdir -p %(installdir)s/lib/python%(pyshortver)s/site-packages/ && " +preinstallopts += "export PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages:$PYTHONPATH && " + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +sanity_check_paths = { + 'files': ['bin/vtk%s-%%(version_major_minor)s' % x for x in ['EncodeString', 'HashSource']], + 'dirs': ['lib/python%(pyshortver)s/site-packages/', 'include/vtk-%(version_major_minor)s'], +} + +sanity_check_commands = [('python', "-c 'import %(namelower)s'")] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/VTune/VTune-2017_update3.eb b/easybuild/easyconfigs/v/VTune/VTune-2017_update3.eb new file mode 100644 index 0000000000000000000000000000000000000000..e35eec89968b9c11ec08e614e0f10f4058da7d8a --- /dev/null +++ b/easybuild/easyconfigs/v/VTune/VTune-2017_update3.eb @@ -0,0 +1,15 @@ +name = 'VTune' +version = '2017_update3' + +homepage = 'http://software.intel.com/en-us/intel-vtune-amplifier-xe' +description = """Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, + Assembly and Java.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['vtune_amplifier_xe_%(version)s.tar.gz'] +checksums = ['1e32ce4a591439d42b23ad2960350f3354fe5f805f96c98f21ce315b66789025'] + +license_file = HOME + '/licenses/intel/license.lic' + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-foss-2016a.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-foss-2016a.eb index 1582b5a179778423338e592f4ef1f8dc06d61986..63ac2b03b033d1491fe2531c6af2bb4a25bbf474 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-foss-2016a.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.11.0-foss-2016a.eb @@ -22,6 +22,6 @@ sanity_check_paths = { 'files': ['bin/%s' % x for x in binaries] + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], 'dirs': [] -} +} moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index 577f4846d801ff4346aa18cb6d46041bf9ff539e..f191980d632e51ab50576426feb48dd27edd13be 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb index 85c8901493df8ce7a7cf21daa9e00e033a79000f..920b6b2d14330268636c24144993df66abc3117c 100644 --- a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb +++ b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb index a25a9d20e8c19c28641fa3d25aa6b487b931cd74..d365513d8839e10fc57ae73080f1cfca92ca7d4f 100644 --- a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb +++ b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb b/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb index 6a972993654bc5fd14fdd85c1e983e22a890eb32..17cc603f5a6dce0a33e5cb1b23af274037d903ee 100644 --- a/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb +++ b/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb @@ -1,5 +1,5 @@ ## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr diff --git a/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb b/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb index 8c1fc2104fe1a6349c9b0b53ba535f5db9a0ed66..55d368233c0be1c3faa48222e5507a0825999163 100644 --- a/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/v/VampirTrace/VampirTrace-5.14.4-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb b/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb index af1032ae7a8d4bf0bc1f4a8add4ceb9bd08f49a3..afd198004530b29c8263da5f39531c7dba138b7e 100644 --- a/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/v/VarScan/VarScan-2.3.6-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman # The Francis Crick Institute @@ -13,7 +13,7 @@ description = """Variant calling and somatic mutation/CNV detection for next-gen toolchain = {'name': 'dummy', 'version': ''} -sources = [('%(name)s.v%(version)s.jar', 'download')] +sources = ['%(name)s.v%(version)s.jar'] source_urls = ['https://sourceforge.net/projects/varscan/files/'] dependencies = [('Java', '1.7.0_80')] diff --git a/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb b/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb index dd6c6f31b089ff85efceca088f50bb40ba50f8e5..b1573bf27c3d4b3823875338ba2a8532e69044c4 100644 --- a/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Adam Huffman, based on initial work by Jordi Blasco # The Francis Crick Institute diff --git a/easybuild/easyconfigs/v/VariantMetaCaller/VariantMetaCaller-1.0-intel-2017a.eb b/easybuild/easyconfigs/v/VariantMetaCaller/VariantMetaCaller-1.0-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d77e58e531e9f57e350e87ef41c621b30510d31e --- /dev/null +++ b/easybuild/easyconfigs/v/VariantMetaCaller/VariantMetaCaller-1.0-intel-2017a.eb @@ -0,0 +1,25 @@ +easyblock = 'MakeCp' + +name = 'VariantMetaCaller' +version = '1.0' + +homepage = 'http://bioinformatics.mit.bme.hu/VariantMetaCaller/' +description = """VariantMetaCaller automatically integrates variant calling pipelines into a better performing + overall model that also predicts accurate variant probabilities.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'cstd': 'c++11', 'openmp': True} + +source_urls = ['http://bioinformatics.mit.bme.hu/VariantMetaCaller/'] +sources = ['%(name)s_v%(version)s.tar.gz'] + +patches = ['VariantMetaCaller-%(version)s_fix-hardcoding.patch'] + +files_to_copy = [(['VariantMetaCaller'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/VariantMetaCaller'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/VariantMetaCaller/VariantMetaCaller-1.0_fix-hardcoding.patch b/easybuild/easyconfigs/v/VariantMetaCaller/VariantMetaCaller-1.0_fix-hardcoding.patch new file mode 100644 index 0000000000000000000000000000000000000000..efa19b4c6e42a3951851cec60b21513f4e8a1fd2 --- /dev/null +++ b/easybuild/easyconfigs/v/VariantMetaCaller/VariantMetaCaller-1.0_fix-hardcoding.patch @@ -0,0 +1,29 @@ +fix hardcoding of g++ and optimisation flags +fix minor compilation issue "no operator "<<" matches these operands" +author: Kenneth Hoste (HPC-UGent) +diff --git a/VariantMetaCaller_v1.0/makefile.orig b/VariantMetaCaller_v1.0/makefile +index 78ff65d..c49027d 100644 +--- a/VariantMetaCaller_v1.0/makefile.orig ++++ b/VariantMetaCaller_v1.0/makefile +@@ -37,7 +37,7 @@ all: VariantMetaCaller + VariantMetaCaller: $(OBJS) $(USER_OBJS) + @echo 'Building target: $@' + @echo 'Invoking: GCC C++ Linker' +- g++ -o"VariantMetaCaller" $(OBJS) $(USER_OBJS) $(LIBS) -fopenmp ++ ${CXX} ${CXXFLAGS} ${LDFLAGS} -o"VariantMetaCaller" $(OBJS) $(USER_OBJS) $(LIBS) + @echo 'Finished building target: $@' + @echo ' ' + +diff --git a/VariantMetaCaller_v1.0/subdir.mk.orig b/VariantMetaCaller_v1.0/subdir.mk +index 530defe..110d8f3 100644 +--- a/VariantMetaCaller_v1.0/subdir.mk.orig ++++ b/VariantMetaCaller_v1.0/subdir.mk +@@ -35,7 +35,7 @@ genotypePrioritizer.d + ./%.o: %.cpp + @echo 'Building file: $<' + @echo 'Invoking: GCC C++ Compiler' +- g++ -O0 -g3 -Wall -c -fmessage-length=0 -std=c++11 -fopenmp -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o"$@" "$<" ++ ${CXX} ${CXXFLAGS} -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o"$@" "$<" + @echo 'Finished building: $<' + @echo ' ' + diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb index 8e5bf1c81ca95e37af888fdacf990d36913b7eed..1a83b16bd69658ccc6668d361ea454764165eb5d 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb index 7fff5ef5b5004d5d04176a8a874b6c38b77587ec..fab2964040b14b482ec4ca5a47b7fb2dcafe0836 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb index e2ba08da33733f40b73911d24e7c61616dbf8ffe..310c71d1cfd047f57e7a466403884ff3b86008a2 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb index 24b79e8841862e3c506a48c18468dbf4bb2a23f2..df2799a1c3cd72348af4bb052bc32bab7a90528d 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb index 7c27a7683f714a47d948e0e9a92200d3492c2d22..99932f6b56c3867e661cfd4f833397f9d27ece33 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb index 8457ee49034b0b489d2f8a2930debc46d7f0519f..41695b9d6e22a7c8150a7b6b9850a79135c6682e 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb index ad56fb1790ddd000066e37dff05367672dc304a4..e2cb04417926db69a6b193b23ccf4b43ebfc8b2b 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute # Authors:: Thekla Loizou , Andreas Panteli diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb index d05f4f9c7ac2a53b2d999f89d699c1621d2c6160..0c9debe5970f6a575a3434f897de67d81e77a3f8 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb index 52c0ab85db56a26b9bd052fae767bffc0a3319d4..7fc70475a3cde687f84aa4d514d079474d5b97c9 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb index fe2df81ad07432b1fec122de1075586f08392b52..8ee19aee565856f1845fc62e074a37ec568c20ad 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb index c23584dddd5b67feae080fb5552eed50cbafa289..fe1e76769e30891cbc9152bd2a56fd4d9883365c 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute # Authors:: Cedric Laczny , Fotis Georgatos , diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e2cfba9b55c941655d44c0379bd2b155c68d3cc --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2017a-mt-kmer_37.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute +# Authors:: Cedric Laczny , Fotis Georgatos , +# Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-kmer_37' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'openmp': True, 'pic': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +buildopts = "OPENMP=1 MAXKMERLENGTH=%s LONGSEQUENCES=1" % versionsuffix.split('_')[1] + +postinstallcmds = ["cd contrib/MetaVelvet-1.* && make && cd ../../ && cp -a contrib %(installdir)s/"] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index 45a8cbb1a5a7eeb4669f20267b005efe47384d41..924f3ce2cc523976d9df83dcf94046f2be75fa43 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index fafae9335ef7443b3424010fa2008a1d2833f935..cf8e038130161075dba80b47676605a7deb2dbe5 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index 29c51c10302ddb52177445faf35ed8bb942d203d..b1d2ca1c123b73e1afbf4a38a4d6edd4ac1edad2 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb index 3214395e25accd0eb0473d3996afec3fb2da498f..dc5c973772b40054d9161a3193afe8e62fe54c64 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.2.3-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb index ec625ff6c6a87d90354e8367522cfbf724942c83..4f26e4b2b5f612ca17d965fc85ee9187523bac88 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.4-foss-2016b.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb index fc2a6f62b89fb2ba00683733a7b0cb6f95667095..1232bbbdcc12faa09a94e915ce0938026ba4c7f5 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.3.5-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb index 824152274f5ea91bf82f8a7b2d058be47e1931e8..9e67a4c5359f77117bb59d2225884973be614b36 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb index 674a6d44d51ffb924fd363bb8ea99bfee2a1236c..f0f30967f23c3413d25578e9b2437875da6c0266 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-8.0-foss-2016a-Python-2.7.11.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb index 120e8225aedef50ecb301a0f613092fe1a0d78e2..51976a2e40bdb4eb87aab5585644180a771cb404 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goolf-1.4.10-Python-2.7.3.eb @@ -22,7 +22,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb index 5c807c96fb6c38f4b2e0ec9c19854898272ad46a..5d302a45536b62b4fc8f62a143c10de262f3e143 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,7 +23,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] # hack, 'import viper' fails because VTK and numpy dependencies are missing -# see https://github.com/hpcugent/easybuild-easyconfigs/issues/100 +# see https://github.com/easybuilders/easybuild-easyconfigs/issues/100 options = {'modulename': 'os'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb b/easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9d8d8d4d19c87ceee8fdce0ae260da1c30f994bc --- /dev/null +++ b/easybuild/easyconfigs/v/Voro++/Voro++-0.4.6-GCCcore-6.4.0.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'Voro++' +version = '0.4.6' + +homepage = 'http://math.lbl.gov/voro++/' + +description = """ + Voro++ is a software library for carrying out three-dimensional computations + of the Voronoi tessellation. A distinguishing feature of the Voro++ library is + that it carries out cell-based calculations, computing the Voronoi cell for + each particle individually. It is particularly well-suited for applications + that rely on cell-based statistics, where features of Voronoi cells (eg. + volume, centroid, number of faces) can be used to analyze a system of + particles. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://math.lbl.gov/voro++/download/dir/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ef7970071ee2ce3800daa8723649ca069dc4c71cc25f0f7d22552387f3ea437e'] + +builddependencies = [ + ('binutils', '2.28'), +] + +# No configure +skipsteps = ['configure'] + +# Override CXX and CFLAGS variables from Makefile +buildopts = 'CXX="$CXX" CFLAGS="$CXXFLAGS"' + +# Override PREFIX variable from Makefile +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ['bin/voro++', 'lib/libvoro++.a', 'include/voro++/voro++.hh'], + 'dirs': [], +} + +modextrapaths = {'CPATH': 'include/voro++'} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/v/vsc-install/vsc-install-0.10.26.eb b/easybuild/easyconfigs/v/vsc-install/vsc-install-0.10.26.eb new file mode 100644 index 0000000000000000000000000000000000000000..66693d8845b5bdf4e16b9f27df55127a00879585 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-install/vsc-install-0.10.26.eb @@ -0,0 +1,23 @@ +easyblock = 'PythonPackage' + +name = 'vsc-install' +version = '0.10.26' + +homepage = 'http://hpcugent.github.com/vsc-install/' +description = """Shared setuptools functions and classes for python libraries developed by UGent's HPC group""" + +# purposely built with system compilers & Python +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_SOURCE] + +options = {'modulename': 'vsc.install'} + +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb index 368c166390d1630230a75938c16c4e80105f5572..1243b5ec82ae02725697ecabe15d7f76cf0d076f 100644 --- a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.2.1.eb @@ -3,7 +3,7 @@ easyblock = 'VersionIndependentPythonPackage' name = 'vsc-mympirun' version = '3.2.1' -homepage = 'http://github.com/hpcugent/vsc-mympirun/' +homepage = 'https://github.com/hpcugent/vsc-mympirun/' description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" # we build this to work with every python version diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.0.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.0.eb new file mode 100755 index 0000000000000000000000000000000000000000..2a97ab5dabcb4a18ed516116066dafb1c81f30cd --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.0.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'vsc-mympirun' +version = '4.0.0' + +homepage = 'https://github.com/hpcugent/vsc-mympirun' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('vsc-install', '0.10.26')] +dependencies = [('vsc-base', '2.5.8')] + +osdependencies = ['python-setuptools'] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +# don't check for import of vsc.mympirun, since that may fail if vsc-base is picked up from the OS +options = {'modulename': 'vsc'} + +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[:2]) +sanity_check_paths = { + 'files': ['bin/mympirun', 'bin/mympisanity'], + 'dirs': ['bin/fake', 'lib/python%s/site-packages' % pyshortver], +} +sanity_check_commands = ["mympirun --help"] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb new file mode 100755 index 0000000000000000000000000000000000000000..5e6aaec33a5bd94f6cf743110538fdfab9bb3dc6 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-4.0.1.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'vsc-mympirun' +version = '4.0.1' + +homepage = 'https://github.com/hpcugent/vsc-mympirun' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['b5b08e6291a68802d29c344d5807e4c2a1945375055b57c819721151775789f0'] + +builddependencies = [('vsc-install', '0.10.26')] +dependencies = [('vsc-base', '2.5.8')] + +osdependencies = ['python-setuptools'] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +# don't check for import of vsc.mympirun, since that may fail if vsc-base is picked up from the OS +options = {'modulename': 'vsc'} + +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[:2]) +sanity_check_paths = { + 'files': ['bin/mympirun', 'bin/mympisanity'], + 'dirs': ['bin/fake', 'lib/python%s/site-packages' % pyshortver], +} +sanity_check_commands = ["mympirun --help"] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb b/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb index f8de4a4721538b577e478163e8ecf78973959932..9bf6597cd2d12558e2bb7b477b319c541d18fd13 100644 --- a/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/v/vt/vt-0.577-goolf-1.7.20.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics diff --git a/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb b/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb index c6a5e3fa1409d49e8ea46e9fb428f562f878d3fd..94ae40e0cdcf1f0760411e2f9d3f5611320d672c 100644 --- a/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/w/WEKA/WEKA-3.6.12-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb b/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb index 96ac9d6530ba3e488c4684abc3cd5e77b0559446..a06d973254a288c721c5b6347cf60feb3094db11 100644 --- a/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb index e27e4f7760b5aa5599db564df161ef830966bcfe..e4cd7e32e8b2cac6cabb729086f9b27b28f86a58 100644 --- a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb index cb26524e7fd5b61cacec4f498829114669b32448..e26d3170c28ad897aa8813cad3feee8b7c349887 100644 --- a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics # Biozentrum - University of Basel diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index 71553532b149b6ea24016f6b76131a29699c0882..fe7a81ee6d8436746cc16c5ea75badf7573b5fbc 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index b2e2623f1fc8cb6e0f85d2ca467492f68dc54c2f..e5c33bcbbd7029b93acfd177e2df6967c9ef0272 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos diff --git a/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb b/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb index daaefceb38c23cd18bc62ef580a8a6d899123b7c..dfff31c3a769e394a2853de532bdf97a0311bb66 100644 --- a/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb +++ b/easybuild/easyconfigs/w/wkhtmltopdf/wkhtmltopdf-0.12.3-Linux-x86_64.eb @@ -1,4 +1,4 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel # SIB Swiss Institute of Bioinformatics @@ -20,11 +20,11 @@ source_urls = ['http://download.gna.org/wkhtmltopdf/%(version_major_minor)s/%(ve sources = ['wkhtmltox-%(version)s_linux-generic-amd64.tar.xz'] osdependencies = [ - ('zlib', 'zlib1g'), - 'fontconfig', - ('freetype', 'libfreetype6'), - ('libX11', 'libx11-6'), - ('libXext', 'libxext6'), + ('zlib', 'zlib1g'), + 'fontconfig', + ('freetype', 'libfreetype6'), + ('libX11', 'libx11-6'), + ('libXext', 'libxext6'), ('libXrender', 'libxrender1') ] diff --git a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb index 93c328cff66a60c43d290f73289af8b542a0130a..ff437b5dba75299d334fa76c66745b36a721035f 100644 --- a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.7.3.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb index ccad95cd1da0eaf0423054d1327e29f359506573..7f314736fb97bcb73f092476fb242049fb0c919a 100644 --- a/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/w/wxPropertyGrid/wxPropertyGrid-1.4.15-GCC-4.9.2.eb @@ -1,4 +1,4 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild # Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr # License:: New BSD diff --git a/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb b/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..69f438faec02c9875ca722698dbd4a95a9e124e3 --- /dev/null +++ b/easybuild/easyconfigs/x/X11/X11-20160819-GCCcore-5.4.0.eb @@ -0,0 +1,134 @@ +easyblock = 'Bundle' + +name = 'X11' +version = '20160819' + +homepage = 'https://www.x.org' +description = "The X Window System (X11) is a windowing system for bitmap displays" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +source_urls = [ + XORG_LIB_SOURCE, + XORG_PROTO_SOURCE, + 'http://xcb.freedesktop.org/dist/', + 'http://xkbcommon.org/download/', + 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', +] + +builddependencies = [ + ('Autotools', '20150215'), + ('Bison', '3.0.4'), + ('gettext', '0.19.8'), + ('pkg-config', '0.29.1'), + ('binutils', '2.26', '', True), +] +dependencies = [ + ('freetype', '2.6.5'), + ('fontconfig', '2.12.1'), + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), +] + +default_easyblock = 'ConfigureMake' + +common_specs = { + 'sources': [SOURCE_TAR_GZ], + 'start_dir': '%(name)s-%(version)s', +} +components = [ + ('xorg-macros', '1.19.0', { + 'sources': ['util-macros-%(version)s.tar.gz'], + 'start_dir': 'util-macros-%(version)s', + }), + ('libpthread-stubs', '0.3', common_specs), + ('bigreqsproto', '1.1.2', common_specs), + ('compositeproto', '0.4.2', common_specs), + ('damageproto', '1.2.1', common_specs), + ('dmxproto', '2.3.1', common_specs), + ('dri2proto', '2.8', common_specs), + ('dri3proto', '1.0', common_specs), + ('fixesproto', '5.0', common_specs), + ('fontsproto', '2.1.3', common_specs), + ('glproto', '1.4.17', common_specs), + ('inputproto', '2.3.1', common_specs), + ('kbproto', '1.0.7', common_specs), + ('presentproto', '1.0', common_specs), + ('randrproto', '1.5.0', common_specs), + ('recordproto', '1.14.2', common_specs), + ('renderproto', '0.11', common_specs), + ('resourceproto', '1.2.0', common_specs), + ('scrnsaverproto', '1.2.2', common_specs), + ('videoproto', '2.3.3', common_specs), + ('xcmiscproto', '1.2.2', common_specs), + ('xextproto', '7.3.0', common_specs), + ('xf86bigfontproto', '1.2.0', common_specs), + ('xf86dgaproto', '2.1', common_specs), + ('xf86driproto', '2.1.1', common_specs), + ('xf86vidmodeproto', '2.3.1', common_specs), + ('xineramaproto', '1.2.1', common_specs), + ('xproto', '7.0.28', common_specs), + ('libXau', '1.0.8', common_specs), + ('libXdmcp', '1.1.2', common_specs), + ('xcb-proto', '1.11', common_specs), + ('libxcb', '1.11.1', common_specs), + ('xtrans', '1.3.5', common_specs), + ('libxkbcommon', '0.6.1', { + 'sources': ['libxkbcommon-%(version)s.tar.xz'], + 'start_dir': 'libxkbcommon-%(version)s', + }), + ('libX11', '1.6.3', common_specs), + ('libXext', '1.3.3', common_specs), + ('libFS', '1.0.7', common_specs), + ('libICE', '1.0.9', common_specs), + ('libSM', '1.2.2', common_specs), + ('libXScrnSaver', '1.2.2', common_specs), + ('libXt', '1.1.5', common_specs), + ('libXmu', '1.1.2', common_specs), + ('libXpm', '3.5.11', common_specs), + ('libXaw', '1.0.13', common_specs), + ('libXfixes', '5.0.2', common_specs), + ('libXcomposite', '0.4.4', common_specs), + ('libXrender', '0.9.9', common_specs), + ('libXcursor', '1.1.14', common_specs), + ('libXdamage', '1.1.4', common_specs), + ('libfontenc', '1.1.3', common_specs), + ('libXfont', '1.5.1', common_specs), + ('libXft', '2.3.2', common_specs), + ('libXi', '1.7.6', common_specs), + ('libXinerama', '1.1.3', common_specs), + ('libXrandr', '1.5.0', common_specs), + ('libXres', '1.0.7', common_specs), + ('libXtst', '1.2.2', common_specs), + ('libXv', '1.0.10', common_specs), + ('libXvMC', '1.0.9', common_specs), + ('libXxf86dga', '1.1.4', common_specs), + ('libXxf86vm', '1.1.4', common_specs), + ('libdmx', '1.1.3', common_specs), + ('libpciaccess', '0.13.4', common_specs), + ('libxkbfile', '1.0.9', common_specs), + ('libxshmfence', '1.2', common_specs), + ('xcb-util', '0.4.0', common_specs), + ('xcb-util-image', '0.4.0', common_specs), + ('xcb-util-keysyms', '0.4.0', common_specs), + ('xcb-util-renderutil', '0.3.9', common_specs), + ('xcb-util-wm', '0.4.1', common_specs), + ('xcb-util-cursor', '0.1.3', common_specs), +] + +# Python is required for xcb-proto +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[0:2]) + +preconfigopts = "if [ ! -f configure ]; then ./autogen.sh; fi && " + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], + 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb b/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..71b0754c396fa44cb6da6df4e393a174add2cc92 --- /dev/null +++ b/easybuild/easyconfigs/x/X11/X11-20170129-gimkl-2017a.eb @@ -0,0 +1,135 @@ +easyblock = 'Bundle' + +name = 'X11' +version = '20170129' + +homepage = 'https://www.x.org' +description = "The X Window System (X11) is a windowing system for bitmap displays" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = [ + XORG_LIB_SOURCE, + XORG_PROTO_SOURCE, + 'http://xcb.freedesktop.org/dist/', + 'http://xkbcommon.org/download/', + 'http://cgit.freedesktop.org/xorg/util/macros/snapshot', +] + +dependencies = [ + ('bzip2', '1.0.6'), + ('fontconfig', '2.12.1'), # pulls in freetype + ('zlib', '1.2.11'), +] +builddependencies = [ + ('Autotools', '20150215', '', True), + ('Bison', '3.0.4'), + ('gettext', '0.19.8', '', True), + ('pkg-config', '0.29.1'), +] + +default_easyblock = 'ConfigureMake' + +common_specs = { + 'sources': [SOURCE_TAR_GZ], + 'start_dir': '%(name)s-%(version)s', +} +components = [ + ('xorg-macros', '1.19.1', { # 2017-01-29 + 'sources': ['util-macros-%(version)s.tar.gz'], + 'start_dir': 'util-macros-%(version)s', + }), + ('libpthread-stubs', '0.3', common_specs), # 2009-10-14 + ('bigreqsproto', '1.1.2', common_specs), # 2012-03-23 + ('compositeproto', '0.4.2', common_specs), # 2010-10-30 + ('damageproto', '1.2.1', common_specs), # 2010-10-30 + ('dmxproto', '2.3.1', common_specs), # 2011-01-06 + ('dri2proto', '2.8', common_specs), # 2012-07-11 + ('dri3proto', '1.0', common_specs), # 2013-11-01 + ('fixesproto', '5.0', common_specs), # 2011-03-08 + ('fontsproto', '2.1.3', common_specs), # 2014-04-14 + ('glproto', '1.4.17', common_specs), # 2013-12-10 + ('inputproto', '2.3.2', common_specs), # 2016-04-04 + ('kbproto', '1.0.7', common_specs), # 2015-05-01 + ('presentproto', '1.1', common_specs), # 2017-01-26 + ('randrproto', '1.5.0', common_specs), # 2015-05-17 + ('recordproto', '1.14.2', common_specs), # 2012-03-23 + ('renderproto', '0.11.1', common_specs), # 2010-08-10 + ('resourceproto', '1.2.0', common_specs), # 2011-05-28 + ('scrnsaverproto', '1.2.2', common_specs), # 2012-03-23 + ('videoproto', '2.3.3', common_specs), # 2016-03-11 + ('xcmiscproto', '1.2.2', common_specs), # 2012-03-23 + ('xextproto', '7.3.0', common_specs), # 2013-12-27 + ('xf86bigfontproto', '1.2.0', common_specs), # 2009-08-27 + ('xf86dgaproto', '2.1', common_specs), # 2009-10-01 + ('xf86driproto', '2.1.1', common_specs), # 2011-01-06 + ('xf86vidmodeproto', '2.3.1', common_specs), # 2011-01-06 + ('xineramaproto', '1.2.1', common_specs), # 2011-01-06 + ('xproto', '7.0.31', common_specs), # 2016-09-23 + ('libXau', '1.0.8', common_specs), # 2013-05-24 + ('libXdmcp', '1.1.2', common_specs), # 2015-03-21 + ('xcb-proto', '1.12', common_specs), # 2016-05-18 + ('libxcb', '1.12', common_specs), # 2016-05-18 + ('xtrans', '1.3.5', common_specs), # 2014-09-22 + ('libxkbcommon', '0.7.1', { # 2017-01-18 + 'sources': ['libxkbcommon-%(version)s.tar.xz'], + 'start_dir': 'libxkbcommon-%(version)s', + }), + ('libX11', '1.6.4', common_specs), # 2016-10-04 + ('libXext', '1.3.3', common_specs), # 2014-07-24 + ('libFS', '1.0.7', common_specs), # 2015-05-01 + ('libICE', '1.0.9', common_specs), # 2014-06-07 + ('libSM', '1.2.2', common_specs), # 2013-09-08 + ('libXScrnSaver', '1.2.2', common_specs), # 2012-03-08 + ('libXt', '1.1.5', common_specs), # 2015-05-01 + ('libXmu', '1.1.2', common_specs), # 2013-09-08 + ('libXpm', '3.5.12', common_specs), # 2016-12-15 + ('libXaw', '1.0.13', common_specs), # 2015-05-01 + ('libXfixes', '5.0.3', common_specs), # 2016-10-04 + ('libXcomposite', '0.4.4', common_specs), # 2013-01-03 + ('libXrender', '0.9.10', common_specs), # 2016-10-04 + ('libXcursor', '1.1.14', common_specs), # 2013-05-30 + ('libXdamage', '1.1.4', common_specs), # 2013-01-03 + ('libfontenc', '1.1.3', common_specs), # 2015-05-01 + ('libXfont', '1.5.2', common_specs), # 2016-08-31 + ('libXfont2', '2.0.1', common_specs), # 2015-12-11 + ('libXft', '2.3.2', common_specs), # 2014-06-06 + ('libXi', '1.7.9', common_specs), # 2017-01-23 + ('libXinerama', '1.1.3', common_specs), # 2013-05-31 + ('libXrandr', '1.5.1', common_specs), # 2016-10-04 + ('libXres', '1.0.7', common_specs), # 2013-05-31 + ('libXtst', '1.2.3', common_specs), # 2016-10-04 + ('libXv', '1.0.11', common_specs), # 2016-10-04 + ('libXvMC', '1.0.10', common_specs), # 2016-10-04 + ('libXxf86dga', '1.1.4', common_specs), # 2013-05-31 + ('libXxf86vm', '1.1.4', common_specs), # 2015-02-24 + ('libdmx', '1.1.3', common_specs), # 2013-05-28 + ('libpciaccess', '0.13.4', common_specs), # 2015-05-01 + ('libxkbfile', '1.0.9', common_specs), # 2015-05-01 + ('libxshmfence', '1.2', common_specs), # 2015-01-02 + ('xcb-util', '0.4.0', common_specs), # 2014-10-15 + ('xcb-util-image', '0.4.0', common_specs), # 2014-10-15 + ('xcb-util-keysyms', '0.4.0', common_specs), # 2014-10-01 + ('xcb-util-renderutil', '0.3.9', common_specs), # 2014-06-13 + ('xcb-util-wm', '0.4.1', common_specs), # 2014-02-19 + ('xcb-util-cursor', '0.1.3', common_specs), # 2016-05-12 +] + +# Python is required for xcb-proto +allow_system_deps = [ + ('Python', SYS_PYTHON_VERSION), +] +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[0:2]) + +preconfigopts = "if [ ! -f configure ]; then ./autogen.sh; fi && " + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'], + 'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib', + 'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb index 4359ea417ded3cc94d05d4f3a2870362cba8f8a9..da4a0e2bda97e7b6131adbf99718b08a7327aeb3 100644 --- a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-2.7.12.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebc4e2bf8c8266212e342ff8ec4f6ae469e8c41a05d099b6778de8424ce32563'] dependencies = [('Python', '2.7.12')] diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb index f4be4224b10265396e54fe9274143ae80dd56d62..a979a43a6fdc4f73e7228b231437393a687b5226 100644 --- a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2016b-Python-3.5.2.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2016b'} source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebc4e2bf8c8266212e342ff8ec4f6ae469e8c41a05d099b6778de8424ce32563'] dependencies = [('Python', '3.5.2')] diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..6269db2cd46605a9d9475767e5943c77dc4d0496 --- /dev/null +++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-0.6a2-intel-2017a-Python-3.6.1.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'XGBoost' +version = '0.6a2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/dmlc/xgboost' +description = """XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, + flexible and portable.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['ebc4e2bf8c8266212e342ff8ec4f6ae469e8c41a05d099b6778de8424ce32563'] + +dependencies = [('Python', '3.6.1')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.2-GCCcore-5.4.0.eb b/easybuild/easyconfigs/x/XZ/XZ-5.2.2-GCCcore-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..3f9cceef3c2320d6d0455d8e6f83bf8167c58fba --- /dev/null +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.2-GCCcore-5.4.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'XZ' +version = '5.2.2' + +homepage = 'http://tukaani.org/xz/' +description = "xz: XZ utilities" + +toolchain = {'name': 'GCCcore', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://tukaani.org/xz/'] + +patches = ['XZ-%(version)s_compat-libs.patch'] + +builddependencies = [ + ('gettext', '0.19.8', '', True), + # use same binutils version that was used when building GCCcore toolchain + ('binutils', '2.26', '', True), +] + +# may become useful in non-x86 archs +# configopts = ' --disable-assembler ' + +sanity_check_paths = { + 'files': ["bin/xz", "bin/lzmainfo"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch b/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch index 3090e4e0eacb0770adcf793487b42ad7c976b101..03b241cdc6f8f22707483dcb8a32dbee2fa8c07c 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.2_compat-libs.patch @@ -1,5 +1,5 @@ include two 5.1.2aplha symbols that were included in XZ 5.1.2alpha which are required by the 'rpm' command on CentOS 7.x -see also https://github.com/hpcugent/easybuild-easyconfigs/issues/4036 +see also https://github.com/easybuilders/easybuild-easyconfigs/issues/4036 original patch: xz-5.2.2-compat-libs.patch, cfr. https://git.centos.org/patch/rpms!xz.git/3f035cee1da9f864609885e5ef2a1be77cd37eee --- src/liblzma/liblzma.map.orig 2015-09-29 12:57:36.000000000 +0200 diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.3-gimkl-2017a.eb b/easybuild/easyconfigs/x/XZ/XZ-5.2.3-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..cc9e04a5714d25b5fd442ddeb5b202f9027874e6 --- /dev/null +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.3-gimkl-2017a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'XZ' +version = '5.2.3' + +homepage = 'http://tukaani.org/xz/' +description = "xz: XZ utilities" + +toolchain = {'version': '2017a', 'name': 'gimkl'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://tukaani.org/xz/'] + +patches = ['XZ-5.2.2_compat-libs.patch'] + +# non-toolchain gettext because otherwise there is a circular dependency: +# XZ (presumably its executables) depends on gettext, which depends on +# xmllib2, which depends (optionally) on XZ +builddependencies = [ + ('Autotools', '20150215', '', True), + ('gettext', '0.19.8', '', True), +] + +# may become useful in non-x86 archs +# configopts = ' --disable-assembler ' + +sanity_check_paths = { + 'files': ["bin/xz", "bin/lzmainfo"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..3832c17c46ad47ddfce3bffdf0f8c08974e758f6 --- /dev/null +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.4-GCCcore-6.4.0.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'Xerces-C++' +version = '3.1.4' + +homepage = 'http://xerces.apache.org/xerces-c/' + +description = """ + Xerces-C++ is a validating XML parser written in a portable subset of C++. + Xerces-C++ makes it easy to give your application the ability to read and + write XML data. A shared library is provided for parsing, generating, + manipulating, and validating XML documents using the DOM, SAX, and SAX2 + APIs. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://archive.apache.org/dist/xerces/c/%(version_major)s/sources/'] +sources = ['xerces-c-%(version)s.tar.gz'] +checksums = ['c98eedac4cf8a73b09366ad349cb3ef30640e7a3089d360d40a3dde93f66ecf6'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('cURL', '7.54.1'), +] + +sanity_check_paths = { + 'files': ['bin/XInclude', 'lib/libxerces-c.%s' % SHLIB_EXT], + 'dirs': ['include/xercesc/xinclude'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/x264/x264-20170406-gimkl-2017a.eb b/easybuild/easyconfigs/x/x264/x264-20170406-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..38fbb83df04cd840bcd16c09951acd183a67202a --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20170406-gimkl-2017a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20170406' + +homepage = 'http://www.videolan.org/developers/x264.html' +description = """x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 + AVC compression format, and is released under the terms of the GNU GPL.""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +source_urls = [ + 'https://download.videolan.org/pub/videolan/x264/snapshots/', + 'ftp://ftp.videolan.org/pub/videolan/x264/snapshots/', +] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] + +dependencies = [('Yasm', '1.3.0')] + +configopts = " --enable-shared --enable-static " + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb b/easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..073bcb840cbd1c863d1b029646da908c85991aa8 --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20170721-GCCcore-6.4.0.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20170721' + +homepage = 'http://www.videolan.org/developers/x264.html' + +description = """ + x264 is a free software library and application for encoding video streams + into the H.264/MPEG-4 AVC compression format, and is released under the + terms of the GNU GPL. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = [ + 'https://download.videolan.org/pub/videolan/x264/snapshots/', + 'ftp://ftp.videolan.org/pub/videolan/x264/snapshots/', +] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] +checksums = ['1459f7b6683c90eafd9d7bf623a574968a94814cdf4b2fb57c0f73bf414d2c8d'] + +builddependencies = [ + ('binutils', '2.28'), +] + +dependencies = [ + ('Yasm', '1.3.0'), +] + +configopts = " --enable-shared --enable-static" + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', + 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/xarray/xarray-0.9.5-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/x/xarray/xarray-0.9.5-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..10d17b9e1ff6f3200aae29e82173d5740af09c84 --- /dev/null +++ b/easybuild/easyconfigs/x/xarray/xarray-0.9.5-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'xarray' +version = '0.9.5' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pydata/xarray' +description = """xarray (formerly xray) is an open source project and Python package that aims to bring + the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the + core pandas data structures.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..d49636fa5c5321a50166a072468d5f6a2be97f90 --- /dev/null +++ b/easybuild/easyconfigs/x/xarray/xarray-0.9.6-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,25 @@ +easyblock = 'PythonPackage' + +name = 'xarray' +version = '0.9.6' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/pydata/xarray' +description = """xarray (formerly xray) is an open source project and Python package that aims to bring + the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the + core pandas data structures.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] +checksums = ['f649a41d43b5a6c64bdcbd57e994932656b689f9593a86dd0be95778a2b47494'] + +dependencies = [('Python', '2.7.13')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..b56ca14110af117d604625cf942f23b5dba893b2 --- /dev/null +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'xbitmaps' +version = '1.1.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """provides bitmaps for x""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_DATA_SOURCE] + +sanity_check_paths = { + 'files': ['include/X11/bitmaps/gray'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xprop/xprop-1.2.2-intel-2017a.eb b/easybuild/easyconfigs/x/xprop/xprop-1.2.2-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..773d17a26f8fc2034383a31a58acb5690f36c47a --- /dev/null +++ b/easybuild/easyconfigs/x/xprop/xprop-1.2.2-intel-2017a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'xprop' +version = '1.2.2' + +homepage = "http://www.x.org/wiki/" +description = """The xprop utility is for displaying window and font properties in an X server. + One window or font is selected using the command line arguments or possibly + in the case of a window, by clicking on the desired window. A list of + properties is then given, possibly with formatting information.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://ftp.x.org/archive/individual/app/'] + +builddependencies = [ + ('pkg-config', '0.29.1'), +] + +dependencies = [ + ('X11', '20170314'), +] + +sanity_check_paths = { + 'files': ['bin/xprop'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-gimkl-2.11.5.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-gimkl-2.11.5.eb index 4bfb1d13fb4f44e5b431a8263c0918f931a4bf06..099fcba24610e1adb206cb54bad47f585bcd80e4 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-gimkl-2.11.5.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], 'dirs': [], } diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb index 8cae54960cb52416522e68c105fbc1d514594fe8..634b4f040d550c54dc3198b9aee3eadab88980ea 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb index 19442cc19e0b9528b10c19741b06037afb596f12..a9b01507615b75ac59f25065ebe86ab05f8f5c9b 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian diff --git a/easybuild/easyconfigs/y/YAXT/YAXT-0.5.1-intel-2017a.eb b/easybuild/easyconfigs/y/YAXT/YAXT-0.5.1-intel-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4cdb872a2cde517d3883e6b5709182a754341f19 --- /dev/null +++ b/easybuild/easyconfigs/y/YAXT/YAXT-0.5.1-intel-2017a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'YAXT' +version = '0.5.1' + +homepage = 'https://www.dkrz.de/redmine/projects/yaxt' +description = "Yet Another eXchange Tool" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://www.dkrz.de/redmine/attachments/download/473/'] +checksums = ['2176c5b1096146e58163656b9d83c0b3'] + +configopts = 'FC="$F90" FCFLAGS="$F90FLAGS -cpp"' + +sanity_check_paths = { + 'files': ['include/yaxt.h', 'include/yaxt.mod', 'lib/libyaxt.a', 'lib/libyaxt.%s' % SHLIB_EXT], + 'dirs': ['include/xt'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb index eeebc684bc7491955b5d899d4989e0c1efd7cefe..3fd2d83e18bccdd54ebbba0ba279288deb3144b4 100644 --- a/easybuild/easyconfigs/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb @@ -31,7 +31,7 @@ dependencies = [ ('PyGTS', '0.3.1', versionsuffix), ('Python', '2.7.11'), ('Qt', '4.8.7', '-GLib-2.48.0'), - ('SQLite', '3.9.2'), + ('SQLite', '3.9.2'), ('VTK', '6.3.0', versionsuffix), ('zlib', '1.2.8'), ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb index 4610fe64fde19eb3e81b6092573d062150e79128..91273df8f98acfc507d506b9da2b1efa6978429c 100644 --- a/easybuild/easyconfigs/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb +++ b/easybuild/easyconfigs/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb @@ -31,7 +31,7 @@ dependencies = [ ('PyGTS', '0.3.1', versionsuffix), ('Python', '2.7.11'), ('Qt', '4.8.7', '-GLib-2.48.0'), - ('SQLite', '3.9.2'), + ('SQLite', '3.9.2'), ('VTK', '6.3.0', versionsuffix), ('zlib', '1.2.8'), ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/y/Yambo/Yambo-4.0.2-rev.90-intel-2015b-QuantumESPRESSO-5.2.1.eb b/easybuild/easyconfigs/y/Yambo/Yambo-4.0.2-rev.90-intel-2015b-QuantumESPRESSO-5.2.1.eb index 0c99f457cb4b54ff780c9baa40b114643bfbb6b9..8696368a6858526b9de52b1007cc1d807b51f5c9 100644 --- a/easybuild/easyconfigs/y/Yambo/Yambo-4.0.2-rev.90-intel-2015b-QuantumESPRESSO-5.2.1.eb +++ b/easybuild/easyconfigs/y/Yambo/Yambo-4.0.2-rev.90-intel-2015b-QuantumESPRESSO-5.2.1.eb @@ -48,6 +48,6 @@ sanity_check_paths = { # is twice in the PATH. Withouth removing the QuantumESPRESSO one, this version of Yambo would be used, # because it is earlier in the PATH modtclfooter = "remove-path PATH $::env(EBROOTQUANTUMESPRESSO)/espresso-%s/YAMBO/bin" % qever -modluafooter = 'remove_path("PATH", os.getenv("EBROOTQUANTUMESPRESSO") .. "/espresso-%s/YAMBO/bin")' % qever +modluafooter = 'remove_path("PATH", os.getenv("EBROOTQUANTUMESPRESSO") .. "/espresso-%s/YAMBO/bin")' % qever moduleclass = 'phys' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index 6ed4579c34b9f698186b75b5968cc45f6828743c..4a89685079944ffd0eb6146835bca9c711b57b85 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index a98dbc5915ec7690c85d7d91bbdf6293f99d5b64..a67685c36b1c3744168e39473a5743218fc02aa2 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..691d1170d589459219fff723337f518ab7085572 --- /dev/null +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-GCCcore-6.4.0.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of +# the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'Yasm' +version = '1.3.0' + +homepage = 'http://www.tortall.net/projects/yasm/' + +description = """Yasm: Complete rewrite of the NASM assembler with BSD license""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} + +source_urls = ['http://www.tortall.net/projects/yasm/releases/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['3dce6601b495f5b3d45b59f7d2492a340ee7e84b5beca17e48f862502bd5603f'] + +builddependencies = [ + ('binutils', '2.28'), +] + +sanity_check_paths = { + 'files': ['bin/yasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb index 90c83cfb4e7c3a8cb26ee9630c567d4355c747b9..83c2304c3f9bbb651929172de9f5546f1574f1fc 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb index fd9ab5e2100db6893d9a9904b390259d6050fb9f..5d91905b00e11abf05672dc47c28f7a425a1c835 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb index d40e39150a0219621316f2454ebcddcfba8b1947..2b3b53fc138e7d749ee7ab5f9e864dddca391121 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb index bae739cbfae6f163accd6595e0cda71e29820e2e..884d55d98dc42422ecc9a7c0d6888e013bfdcbc5 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb index b2b7c412d9ad8e5c93c9ec279e6755bba714efe0..54da1bfc1c535ec98d38771ee4aa8f018d32909b 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..190f07dd2b4abc2e8f45e0407bc61bf7a405fa22 --- /dev/null +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2017a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'Yasm' +version = '1.3.0' + +homepage = 'http://www.tortall.net/projects/yasm/' +description = """Yasm: Complete rewrite of the NASM assembler with BSD license""" + +toolchain = {'name': 'gimkl', 'version': '2017a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.tortall.net/projects/yasm/releases/'] + +sanity_check_paths = { + 'files': ['bin/yasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-goolf-1.7.20.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-goolf-1.7.20.eb index 09279b532af233dab2248c5a4de6dd5e2a36e5e7..f3f0a1a91503006b4de4ce92c9ac50afaa458a61 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-goolf-1.7.20.eb @@ -16,4 +16,4 @@ sanity_check_paths = { 'dirs': [], } -moduleclass = 'lang' +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb index af77be599d01325cdfabdd53cf67ed6ff648f018..053cfe39f7b1ac83e12c0dc3beadccd9913a84c1 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2015b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb index b5dae689242788d8205f1fbd757094f35fd95ad2..31172f8c406e486ea5cfcb14cabf17fa1c834acb 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb index bd4bc5d66f8301218b2425b424e00ec6ddbe4e6f..a838254d152f82d7e101664d65d922eeeab2de98 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016b.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb index f0db7e825680b7e642a01f21bef5049c01e5abc8..89a5a1ab38ac9f859826b37d175a10ed0d88a8e1 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2017a.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/y/yaff/yaff-1.1.2-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/y/yaff/yaff-1.1.2-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..a76854e99b8f690b689ac0ccdcb8afabc48e6834 --- /dev/null +++ b/easybuild/easyconfigs/y/yaff/yaff-1.1.2-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'yaff' +version = '1.1.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/yaff/' +description = """Yaff stands for 'Yet another force field'. It is a pythonic force-field code.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/molmod/yaff/releases/download/%(version)s'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.13'), + ('h5py', '2.7.0', versionsuffix), + ('molmod', '1.1', '-Python-%(pyver)s'), +] + +options = {'modulename': name} +runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc; " +runtest += "python setup.py build_ext -i; nosetests -v" + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb b/easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..16b4d6c3310540484afd0c674b612d537f2ce517 --- /dev/null +++ b/easybuild/easyconfigs/y/yaff/yaff-1.1.3-intel-2017a-Python-2.7.13.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'yaff' +version = '1.1.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://molmod.github.io/yaff/' +description = """Yaff stands for 'Yet another force field'. It is a pythonic force-field code.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://github.com/molmod/yaff/releases/download/%(version)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['1e4ce10c19ed4338cb8ddee63beecadee4ecefcf1c12be90312ce29a6cbae116'] + +dependencies = [ + ('Python', '2.7.13'), + ('h5py', '2.7.0', versionsuffix), + ('molmod', '1.1', '-Python-%(pyver)s'), +] + +options = {'modulename': name} +runtest = "export MATPLOTLIBRC=$PWD; echo 'backend: agg' > $MATPLOTLIBRC/matplotlibrc; " +runtest += "python setup.py build_ext -i; nosetests -v" + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb index 6b82f0fc243f58bf2bdbb40765dc5bf4be9e16bb..66f5997d8e99b28a00af763c3e133fd86f55faf8 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..acbff073f4ef527ee32e512f9586e40751f2c409 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' + +description = """ + zlib is designed to be a free, general-purpose, legally unencumbered -- that + is, not covered by any patents -- lossless data-compression library for use + on virtually any computer hardware and operating system. +""" + +toolchain = {'name': 'GCCcore', 'version': '6.4.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://zlib.net/fossils/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [ + ('binutils', '2.28', '', True), +] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', + 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..016a24fff229742c939c4370349366a59d5d8a9a --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-7.2.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCCcore', 'version': '7.2.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://zlib.net/fossils'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] + +# use same binutils version that was used when building GCC toolchain +builddependencies = [('binutils', '2.29', '', True)] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11-gimkl-2017a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-gimkl-2017a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1346eea81c974c1a97daccce5429a21cb9239731 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11-gimkl-2017a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.11' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'version': '2017a', 'name': 'gimkl'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://zlib.net/fossils'] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb index b74939ef095a74fd162359b48a31781ac0c1aa81..d8f38e9cadeaa6dd144ae8c87811f976cb34c7da 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.11.eb @@ -4,22 +4,28 @@ name = 'zlib' version = '1.2.11' homepage = 'http://www.zlib.net/' -description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, - not covered by any patents -- lossless data-compression library for use on virtually any - computer hardware and operating system.""" + +description = """ + zlib is designed to be a free, general-purpose, legally unencumbered -- that + is, not covered by any patents -- lossless data-compression library for use + on virtually any computer hardware and operating system. +""" toolchain = {'name': 'dummy', 'version': 'dummy'} toolchainopts = {'pic': True} source_urls = ['http://zlib.net/fossils/'] sources = [SOURCELOWER_TAR_GZ] +checksums = ['c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'] # need to take care of $CFLAGS ourselves with dummy toolchain -# we need to add -fPIC, but should also include -O* option to avoid compiling with -O0 (default for GCC) +# we need to add -fPIC, but should also include -O* option to avoid +# compiling with -O0 (default for GCC) buildopts = 'CFLAGS="-O2 -fPIC"' sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', + 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index d756317c6cdd2f202bee79a7e47b3bdf87c9d26e..aeebd7e24891df407f7dec200735cb5b5541a4ea 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index 960ac2460a460377578f5c7fdb7e735c0e2e62ee..f13e061e4ebf52aefebcf7dbd2fc5e36bf1855a1 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -1,5 +1,5 @@ ## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos diff --git a/setup.py b/setup.py index cdf0d69c622b44ecc0fbe37f323ce284079c6570..49f7189df78fc9d20fa3363bd907e257ed322b81 100644 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '3.2.1' +VERSION = '3.4.0.dev0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) @@ -104,12 +104,12 @@ setup( version = VERSION, author = "EasyBuild community", author_email = "easybuild@lists.ugent.be", - description = """Easyconfig files are simple build specification files for EasyBuild, + description = """Easyconfig files are simple build specification files for EasyBuild, \ that specify the build parameters for software packages (version, compiler toolchain, dependency \ versions, etc.).""", license = "GPLv2", keywords = "software build building installation installing compilation HPC scientific", - url = "http://hpcugent.github.com/easybuild", + url = "https://easybuilders.github.io/easybuild/", data_files = get_data_files(), long_description = read("README.rst"), classifiers = [ diff --git a/test/__init__.py b/test/__init__.py index e44e0c6e5878e4b5e6fa294926e02aaea2b6e8e7..4c16c11e57aa5fe67a5b2630d950f5e1b4343fd7 100644 --- a/test/__init__.py +++ b/test/__init__.py @@ -8,7 +8,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 993e9395bac8bb49f3d9703457a53b041e335a1e..2dac08069feb0aa89bcb9652ecbfb531db7a1c27 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -8,7 +8,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -240,6 +240,15 @@ def template_easyconfig_test(self, spec): error_msg = "Found use of '$root', not compatible with modules in Lua syntax, use '%%(installdir)s' instead: %s" self.assertFalse(res, error_msg % res) + # make sure old GitHub urls for EasyBuild that include 'hpcugent' are no longer used + old_urls = [ + 'github.com/hpcugent/easybuild', + 'hpcugent.github.com/easybuild', + 'hpcugent.github.io/easybuild', + ] + for old_url in old_urls: + self.assertFalse(old_url in ec.rawtxt, "Old URL '%s' not found in %s" % (old_url, spec)) + # make sure all patch files are available specdir = os.path.dirname(spec) specfn = os.path.basename(spec) diff --git a/test/easyconfigs/styletests.py b/test/easyconfigs/styletests.py new file mode 100644 index 0000000000000000000000000000000000000000..7baae2800729121181ba2b105c8cb24dec2c9ce7 --- /dev/null +++ b/test/easyconfigs/styletests.py @@ -0,0 +1,70 @@ +## +# Copyright 2016 Ghent University +# +# This file is part of EasyBuild, +# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), +# with support of Ghent University (http://ugent.be/hpc), +# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en), +# the Hercules foundation (http://www.herculesstichting.be/in_English) +# and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). +# +# https://github.com/easybuilders/easybuild +# +# EasyBuild is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation v2. +# +# EasyBuild is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with EasyBuild. If not, see . +## +""" +Style tests for easyconfig files. Uses pep8. + +@author: Ward Poelmans (Ghent University) +""" + +import glob +import sys +from unittest import TestCase, TestLoader, main +from vsc.utils import fancylogger + +from easybuild.framework.easyconfig.tools import get_paths_for +from easybuild.framework.easyconfig.style import check_easyconfigs_style + +try: + import pep8 +except ImportError: + pass + + +class StyleTest(TestCase): + log = fancylogger.getLogger("StyleTest", fname=False) + + def test_style_conformance(self): + """Check the easyconfigs for style""" + if 'pep8' not in sys.modules: + print "Skipping style checks (no pep8 available)" + return + + # all available easyconfig files + easyconfigs_path = get_paths_for("easyconfigs")[0] + specs = glob.glob('%s/*/*/*.eb' % easyconfigs_path) + specs = sorted(specs) + + result = check_easyconfigs_style(specs) + + self.assertEqual(result, 0, "Found code style errors (and/or warnings): %s" % result) + + +def suite(): + """Return all style tests for easyconfigs.""" + return TestLoader().loadTestsFromTestCase(StyleTest) + + +if __name__ == '__main__': + main() diff --git a/test/easyconfigs/suite.py b/test/easyconfigs/suite.py index 18f087e264f6a9f24724e8166b7bf01576f6d4ff..a8806bf1ae10712266d2b0543fea4bb4cb16eb47 100644 --- a/test/easyconfigs/suite.py +++ b/test/easyconfigs/suite.py @@ -9,7 +9,7 @@ # Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # -# http://github.com/hpcugent/easybuild +# https://github.com/easybuilders/easybuild # # EasyBuild is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -30,7 +30,6 @@ Usage: "python -m easybuild.easyconfigs.test.suite.py" or "./easybuild/easyconfi @author: Toon Willems (Ghent University) @author: Kenneth Hoste (Ghent University) """ -import glob import os import shutil import sys @@ -41,6 +40,7 @@ from vsc.utils import fancylogger import easybuild.tools.build_log # initialize EasyBuild logging, so we disable it import test.easyconfigs.easyconfigs as e +import test.easyconfigs.styletests as s # disable all logging to significantly speed up tests fancylogger.disableDefaultHandlers() @@ -52,7 +52,7 @@ os.environ['EASYBUILD_DEPRECATED'] = '10000' os.environ['EASYBUILD_TMP_LOGDIR'] = tempfile.mkdtemp(prefix='easyconfigs_test_') # call suite() for each module and then run them all -SUITE = unittest.TestSuite([x.suite() for x in [e]]) +SUITE = unittest.TestSuite([x.suite() for x in [e, s]]) # uses XMLTestRunner if possible, so we can output an XML file that can be supplied to Jenkins xml_msg = ""