diff --git a/.gitignore b/.gitignore index e6534bd5b19c66398a2cf38930cca515da46c5fd..c6bb2c7fddbaae33654b72734b3dd974e55e9b3c 100644 --- a/.gitignore +++ b/.gitignore @@ -6,3 +6,4 @@ LICENSE_HEADER build/ dist/ *egg-info/ +*.swp diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index babe85ff33b338b114374e7ea546ca1f13d58a87..fe82903a6c3daf63c74d6884ecd069a4ff1b10bf 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -120,7 +120,7 @@ You might also want to look into [hub](https://github.com/defunkt/hub) for more ### Review process -A member of the EasyBuild team will then review your pull request, paying attention to what you're contributing, how you implemented it and [code style](Code style). +A member of the EasyBuild team will then review your pull request, paying attention to what you're contributing, how you implemented it and [code style](http://easybuild.readthedocs.org/en/latest/Code_style.html). Most likely, some remarks will be made on your pull request. Note that this is nothing personal, we're just trying to keep the EasyBuild codebase as high quality as possible. Even when an EasyBuild team member makes changes, the same public review process is followed. diff --git a/README.rst b/README.rst index 51eea37653449604732f0070e5e0d2371ed466a5..becdc63ccbda9e17041091f9c49c75724cbea14c 100644 --- a/README.rst +++ b/README.rst @@ -1,47 +1,55 @@ -Build status - *master branch (Python 2.4, Python 2.6, Python 2.7)* - -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/ - -Build status - *develop branch (Python 2.4, Python 2.6, Python 2.7)* - -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/ - -EasyBuild: building software with ease --------------------------------------- - -The easybuild-easyconfigs package provides a collection of well-tested -example easyconfig files for EasyBuild -(http://hpcugent.github.com/easybuild), a software build and -installation framework written in Python that allows you to install -software in a structured, repeatable and robust way. +.. image:: http://hpcugent.github.io/easybuild/images/easybuild_logo_small.png + :align: center +`EasyBuild `_ is a software build +and installation framework that allows you to manage (scientific) software +on High Performance Computing (HPC) systems in an efficient way. + +The **easybuild-easyconfigs** package provides a collection of well-tested +example *easyconfig files* for EasyBuild. Easyconfig files are used to specify which software to build, which version of the software (and its dependencies), which build parameters to use (e.g., which compiler toolchain to use), etc. -The code of the easybuild-easyconfigs package is hosted on GitHub, along +The EasyBuild documentation is available at http://easybuild.readthedocs.org/. + +The easybuild-easyconfigs package is hosted on GitHub, along with an issue tracker for bug reports and feature requests, see http://github.com/hpcugent/easybuild-easyconfigs. -The EasyBuild documentation is available on the GitHub wiki of the -easybuild meta-package, see -http://github.com/hpcugent/easybuild/wiki/Home. - -Related packages: \* easybuild-framework -(http://pypi.python.org/pypi/easybuild-framework): the EasyBuild -framework, which includes the easybuild.framework and easybuild.tools -Python packages that provide general support for building and installing -software \* easybuild-easyblocks -(http://pypi.python.org/pypi/easybuild-easyblocks): a collection of -easyblocks that implement support for building and installing (groups -of) software packages +Related Python packages: + +* **easybuild-framework** + + * the EasyBuild framework, which includes the ``easybuild.framework`` and ``easybuild.tools`` Python + packages that provide general support for building and installing software + * GitHub repository: http://github.com/hpcugent/easybuild-framework + * PyPi: https://pypi.python.org/pypi/easybuild-framework + +* **easybuild-easyblocks** + + * a collection of easyblocks that implement support for building and installing (groups of) software packages + * GitHub repository: http://github.com/hpcugent/easybuild-easyblocks + * package on PyPi: https://pypi.python.org/pypi/easybuild-easyblocks + +*Build status overview:* + +* **master** branch *(Python 2.4, Python 2.6, Python 2.7)* + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/ + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/ + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/ + +* **develop** branch *(Python 2.4, Python 2.6, Python 2.7)* + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/ + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/ + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/ diff --git a/RELEASE_NOTES b/RELEASE_NOTES index be302f65802cef36d30517b67beb5c5fd2b1b62d..01b1286c298cdb0295ec330161c1aace63031e92 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -1,12 +1,164 @@ This file contains a description of the major changes to the easybuild-easyconfigs EasyBuild package. For more detailed information, please see the git log. -The latest version of easybuild-easyconfig provides 2,319 easyconfig files, for 444 different software packages -and 29 different (compiler) toolchains. +These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -v1.11.0 (February 16th 2013) +The latest version of easybuild-easyconfig provides 3,066 easyconfig files, for 551 different software packages +and 32 different (compiler) toolchains. + +v1.16.1.0 (December 19th 2014) +------------------------------ + +- set default easyblock to ConfigureMake in TEMPLATE.eb (#1277) + +v1.16.0.0 (December 18th 2014) +------------------------------ + +feature + bugfix release +- added example easyconfig files for 39 new software packages: + ANTs (#1232), BEOPS (#1264), Chhimera (#1255), ctffind (#1249), DBD-SQLite (#1064), DBD-mysql (#1063), + DIALIGN-TX (#668), ffmpeg (#1088), GObject-Introspection (#1079), GTS (#1079), Graphviz (#1079), GraphViz2 (#1079), + grace (#1131), HarfBuzz (#1079), HTSlib (#1161), GSSAPI (#1048), Kerberos_V5 (#1048), libevent (#1063), + libXdmcp (#1129), libXft (#1017), libXinerama (#1017), libXrender (#1017), Maven (#1094), MySQL (#1063), + Net-LibIDN (#1060), OpenCV (#1088), OpenMD (#1105), Qhull (#1105), Pango (#1079), psmpi (#1245, #1246), + RELION (#1017), renderproto (#1017), rjags (#1125), runjags (#1125), SPRNG (#1138, #1141), xineramaproto (#1017), + XML-Dumper (#1061), XML-Parser (#1061), XML-Twig (#1061) +- added easyconfigs for new toolchains + intel/2014.10 & intel/2014.11 (#1219), intel-para/2014.12 (#1246), gpsolf/2014.12 (#1245), iompi/6.6.4 (#1215) +- include easyblock = 'ConfigureMake' in relevant easyconfigs to deal with deprecation of automagic fallback to ConfigureMake (#1248) + - see also easybuild-framework#1113 and Automagic fallback to ConfigureMake +- clean up use of deprecated functionality in existing easyconfigs (#1252, #1259) + - stop using deprecated makeopts, premakeopts and shared_lib_ext + - check for use of deprecated functionality in easyconfigs unit tests + - see also http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html#easyconfig-parameters +- various other enhancements, including: + - also build fftw3_threads libraries, and enhance sanity checks (#1013) + - add unit test to verify specified sanity_check_paths (#1119) + - update and clean up README, refer to http://easybuild.readthedocs.org documentation (#1184, #1224) +- various bug fixes, including: + - fix unit tests w.r.t. changes in framework (#1146) + - remove unnecessary build dependencies for OpenMPI (#1168) + - remove duplicate line in OpenMPI easyconfigs (#1207) + - fix affiliation/mail address for Fotis in headers (#1237) + - fix permissions of easyconfig files for consistency (#1210) + - disable symbol lookup feature in cairo to fix build on SL6 (#1241) + - fix easyconfig gmpolf toolchain w.r.t. MPICH software name (#1217) + - see also easybuild-framework#1112 + - fix source_urls for WRF and WPS (#1225) + - fix and clean up GATE easyconfigs (#1228) + - fix broken CLHEP builds by including -gcc in $CXXFLAGS (#1254) + - add patch to fix broken test in Go (#1257) + - fix name of GMAP easyconfigs, should be GMAP-GSNAP (#1268) + - fix easyconfig filenames, enhance unit test to check easyconfig filenames (#1271) + +v1.15.2.0 (October 7th 2014) ---------------------------- +bugfix release +- disable parallel build for slalib (#968) +- fix compatibility of goolfc with HierarchicalMNS by using GCC toolchain for installing CUDA (#1106, #1115) +- fix zlib OS dependency spec for Debian in Boost easyconfigs (#1109) +- fix compatibility of gimkl with HierarchicalMNS by using gimpi subtoolchain (#1110) +- make both GCC and Clang first-class members in Clang-based toolchains to fix compatibility with HierarchicalMNS (#1113) + +v1.15.1.0 (September 23rd 2014) +------------------------------- + +bugfix release +- minor bug fixes, including: + - use SHLIB_EXT in GMP/MPFR easyconfigs (#1090) + - fix TopHat homepage and source_urls since page moved (#1092) + - make iomkl toolchain compatible with HierarchicalMNS (#1099) + +v1.15.0.0 (September 12th 2014) +------------------------------- + +feature + bugfix release +- added example easyconfig files for 13 new software packages: + Circos (#780), DB_File (#913), Emacs (#970), evmix (#1077), GD (#780), gsl (#1077), IOR (#949), JAGS (#1076), + libgd (#780), MethPipe (#1070), Modeller (#825), NAMD (#835), netCDF-C++4 (#1015) +- added easyconfigs for new toolchains (#986, #1051): + gimkl/1.5.9, ictce/7.1.2 +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... + including Python 2.7.8/3.4.1, Perl 5.20.0, R 3.1.1, NWChem 6.3, OpenFOAM-Extend 3.1, GCC 4.9.1, Clang 3.4.2, ... +- various enhancements, including: + - make existing ictce/intel toolchains compatible with HierarchicalMNS (#1069) + - this involves installing impi with an iccifort toolchain, and imkl with an iimpi toolchain +- various bug fixes, including: + - download link for Perl modules changed to use cpan.metapan.org + - fix missing MPI-based OpenFOAM libraries (Pstream, (pt)scotchDecomp), make sure provided SCOTCH is used (#957) + +v1.14.0.0 (July 9th 2014) +------------------------- + +feature + bugfix release +- added example easyconfig files for 17 new software packages: + ANSYS (#836), Beast (#912), ELPH (#910, #911), FastTree (#900, #947), GEM-library (#858), HPCG (#853), + mdtest (#925), ncview (#648), PRANK (#917), RDP-Classifier (#903), SDPA (#955), SIBELia (#886), + SOAPaligner (#857), SPAdes (#884), stemming (#891), WHAM (#872), YAXT (#656) +- added easyconfigs for new toolchains (#935, #944, #948): + foss/2014b, ictce/6.3.5, intel/2014b +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... +- various enhancements, including: + - replace use of deprecated (pre)makeopts with (pre)buildopts in all easyblocks (#954) + - disable running embossupdate on installation of EMBOSS (#963) +- various bug fixes, including: + - really enable OpenMP support in FastTree easyconfigs (#947) + - fix easyconfigs unit tests after changes in framework (#958) + +v1.13.0.0 (May 29th 2014) +------------------------- + +feature + bugfix release +- added example easyconfig files for 32 new software packages: + APBS (#742), BayesTraits (#770), bc (#888), BitSeq (#791), CEM (#789), CVS (#888), eXpress (#786), file (#888), + GEMSTAT (#861), GMAP (#594), Go (#887), iscp (#602), IsoInfer (#773), Jellyfish (#868), less (#888), + libcircle (#883), mcpp (#602), MMSEQ (#795), MUSTANG (#800), OpenFOAM-Extend (#437), popt (#759), pscom (#759), + psmpi2 (#759), QuadProg++ (#773), rSeq (#771), RSEQtools (#870), Ruby (#873), segemehl (#792), SOAPec (#879), + SOAPdenovo2 (#874), SRA-Toolkit (#793), texinfo (#888) +- added easyconfig for new toolchain goolfc/1.4.10 +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... + - e.g. older versions of Boost (1.47.0), GCC (4.1-4.4), & recent versions of Clang, GCC, Lmod, etc. +- various enhancements, including: + - add OpenSSL dependency for cURL, to enable HTTPS support (#881) + - also install esl-X binaries for HMMER (#889) +- various bug fixes, including: + - properly pass down compiler flags for ParMGridGen (#437) + - specify proper make options for PLINK, fixing the build on SL6 (#594, #772) + - fix netloc version (0.5 rather than 0.5beta) (#707) + - remove Windows-style line ending in netCDF patch file (#796) + - bump version of OpenSSL dep for BOINC (#882) + +v1.12.1.0 (April 25th 2014) +--------------------------- + +(no changes compared to v1.12.0, simple version bump to stay in sync with easybuild-framework) + +v1.12.0.0 (April 4th 2014) +-------------------------- + +feature + bugfix release +- added example easyconfig files for 6 new software packages: + CLooG (#653), ELPA (#738), LIBSVM (#788), netaddr (#753), netifcas (#753), slalib-c (#750) +- added easyconfigs for new toolchains: + ClangGCC/1.3.0 (#653), goolf/1.4.10-no-OFED (#749), goolf/1.5.14(-no-OFED) (#764, #767), ictce/6.2.5 (#726), iomkl (#747) +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... +- various enhancements, including: + - tweak BOINC easyconfig to make use of glob support available for files_to_copy (#781) + - enable -fPIC for libreadline, so it can be linked into shared libs (e.g. libpython2.x.so) (#798) +- various bug fixes, including: + - fix Qt source_urls (#756) + - enable -fPIC in ncurses 5.9 ictce/5.2.0 easyconfig, just like in the others (#801) + - fix unit tests after changes to framework (#763, #766, #769) + +v1.11.1.0 (February 28th 2014) +------------------------------ + +(no changes compared to v1.11.0, simple version bump to stay in sync with easybuild-framework) + +v1.11.0.0 (February 16th 2014) +------------------------------ + feature + bugfix release - added example easyconfig files for 30 new software packages: argtable (#669), Clustal-Omega (#669), Coreutils (#582), GMT (#560), gperftools (#596), grep (#582), h4toh5 (#597), @@ -27,8 +179,8 @@ feature + bugfix release - add additional source URL in Qt easyconfigs (#676) - specify correct $PATH specification and define $CHPL_HOME for Chapel (#683) -v1.10.0 (December 24th 2013) ----------------------------- +v1.10.0.0 (December 24th 2013) +------------------------------ feature + bugfix release - added example easyconfig files for 18 new software packages: @@ -61,8 +213,8 @@ feature + bugfix release - this also triggered removal of patch files for NCL that rewrote 'include/hdf' to 'include' - fix WPS v3.5.1 patch file after upstream source tarball was changed, supply checksum for verification (#642) -v1.9.0 (November 17th 2013) ---------------------------- +v1.9.0.0 (November 17th 2013) +----------------------------- feature + bugfix release - added example easyconfig files for 58 new software packages: diff --git a/easybuild/easyconfigs/TEMPLATE.eb b/easybuild/easyconfigs/TEMPLATE.eb index e772048a100da3ef167d6c4d94d54b69723110e1..69759ec8dacede3c37f1dfa04571dd71217ea158 100644 --- a/easybuild/easyconfigs/TEMPLATE.eb +++ b/easybuild/easyconfigs/TEMPLATE.eb @@ -1,6 +1,7 @@ # Note: # This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild # It was auto-generated based on a template easyconfig, so it should be used with care. +easyblock = 'ConfigureMake' name = 'NAME' version = 'VERSION' diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..47622c51e03014c1e9413a31402c5043de058d69 --- /dev/null +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb @@ -0,0 +1,15 @@ +name = 'ABAQUS' +version = '6.14.1-linux-x86_64' + +homepage = 'http://www.simulia.com/products/abaqus_fea.html' +description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%s-%s.tgz' % (name, version.split('-')[0])] + +builddependencies = [('Java', '1.7.0_60')] + +preinstallopts = "export CHECK_DISK_SPACE=OFF && " + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index ee0b20850f382df6792c3d6bf35017609441cfb0..a0768a4fb37e85ed907357b329230206ddb8a61c 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index 3ee5efaf984df6da562251947b7b09864e418425..0e53b02003a1589f80ab84a87635921ee0685125 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index b845af54b07f0199cad47d74b28b9c5c90d37d11..7722a1277b76511a26327a423b05c75d046f23ae 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 4bacbecb242a53a7efce17691771e8b4a46b76c5..570c4b562c91d58f8e0a1ef156ca72ae30ac3e2c 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index c09d32e5923e7f1abea1fb38e2af46fd9bc51a1b..893dbac4abf8277a9ea1e31a16a576fd96b611a6 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index d7bb262bc90b024edd9a58ac8d1f341d3e08587c..47d31cf71556cc53774fd908eff87f96164d14bc 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index dc3d70166da1705472a44e4f6a51f10e3e5c9417..8ce4ee39f134dbdbe4db6f8b239872e83eb0ce08 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 3d65bd4489ea7650e68d839f9acd3fa49867e4c9..418f170236138b173bd2343a2a4df954213203c4 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.6' versionsuffix = '-Python-2.7.5' diff --git a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb index 11670bd9af4a71c9a8e1e50f60d52d71ad6b6c85..bde2863301918dcf07cd88c34edf095a1dbcca8a 100644 --- a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'ALLPATHS-LG' version = '46968' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 7f8e82a632c67bcb7b6e0f4ba9b77f41cf1e1c5a..7204bb4bed9d4769b4e8b57bc4c018c44ee1ff30 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index 164d45803e03f70a25f6300e4741d729a63df4fb..67f7c8c305bc1cb37c117de1e3f712f62b77c02a 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index f67605a5a912fe9642581810f81888da6998b94d..e18be68931ec1bc6d57d99c045da224c77a18ca3 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index 1d439525077265d3dc60326d0847aefa9105be9c..89797ac535945c0cce97cf372399bd1f06ae5038 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb b/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5836d2ff45bb0958d38cb651fc74a04f43726ffc --- /dev/null +++ b/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb @@ -0,0 +1,19 @@ +name = 'ANSYS' +version = '15.0' + +homepage = 'http://www.ansys.com' +description = """ANSYS simulation software enables organizations to confidently predict + how their products will operate in the real world. We believe that every product is + a promise of something greater. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +#create a zip file from the 3 install iso files. +#make sure all files of the iso's are in the same directory. +sources = ['ANSYS-15.0.zip'] + +import os +license_server = os.getenv('EB_ANSYS_LICENSE_SERVER', 'license.example.com') +license_server_port = os.getenv('EB_ANSYS_LICENSE_SERVER_PORT', '2325:1055') + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb b/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..1e8a2bf6f604987676f533bc07bc7235334a0b3a --- /dev/null +++ b/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb @@ -0,0 +1,30 @@ +easyblock = 'CMakeMake' + +name = 'ANTs' +version = '2.1.0rc3' + +homepage = 'http://stnava.github.io/ANTs/' +description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, + interpreting and visualizing multidimensional data.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/stnava/ANTs/archive/'] +sources = ['v%(version)s.tar.gz'] + +builddependencies = [('CMake', '3.0.2')] + +skipsteps = ['install'] +buildopts = ' && mkdir -p %(installdir)s && cp -r * %(installdir)s/' + +parallel = 1 + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/ANTS'], + 'dirs': ['lib'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb b/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..730a5cb604661e816f5c4e11e508a857ad1af81f --- /dev/null +++ b/easybuild/easyconfigs/a/APBS/APBS-1.4-linux-static-x86_64.eb @@ -0,0 +1,28 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'APBS' +version = '1.4' +versionsuffix = '-linux-static-x86_64' + +easyblock = 'PackedBinary' + +homepage = 'http://www.poissonboltzmann.org/apbs' +description = """ APBS is a software package for modeling biomolecular solvation + through solution of the Poisson-Boltzmann equation (PBE), one of the most popular + continuum models for describing electrostatic interactions between molecular solutes + in salty, aqueous media. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-%(version)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ['bin/apbs'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb b/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb index 6cfa20d12cd14b7eaf1f1add48ecd90029a17d14..77b39fdaa5d5fe112d99a240d3f38b147b6b3161 100644 --- a/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb @@ -5,7 +5,8 @@ homepage = 'http://www.arb-home.de/' description = """The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the respective sequence entries is structured according to phylogeny or other user defined criteria.""" -toolchain = {'name': 'ictce', 'version': '4.1.13'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +toolchain = {'name': 'ictce', 'version': '4.1.13'} # download from http://download.arb-home.de/release/arb_5.5, and rename to include version sources = ['%(namelower)s-%(version)s-src.tgz'] @@ -34,6 +35,6 @@ dependencies = [ ] # make sure GCC version check passes, use ARB script to get current GCC version as indicate it's an allowed version -makeopts = 'GCC_VERSION_ALLOWED=`$ARBHOME/SOURCE_TOOLS/arb_gcc_version.pl`' +buildopts = 'GCC_VERSION_ALLOWED=`$ARBHOME/SOURCE_TOOLS/arb_gcc_version.pl`' moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-4.300.8-ictce-5.5.0-Python-2.7.5.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-4.300.8-ictce-5.5.0-Python-2.7.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..172092be52ad44544f4f4a9af726421475b4f607 --- /dev/null +++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-4.300.8-ictce-5.5.0-Python-2.7.5.eb @@ -0,0 +1,23 @@ +name = 'Armadillo' +version = '4.300.8' + +homepage = 'http://arma.sourceforge.net/' +description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards + a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, + as well as a subset of trigonometric and statistics functions.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/arma/files'] + +versionsuffix = "-Python-2.7.5" + +dependencies = [ + ('Boost', '1.53.0', versionsuffix), + ('arpack-ng', '3.1.3'), +] + +builddependencies = [('CMake', '2.8.12')] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb old mode 100755 new mode 100644 index 39d449ebf40949e334c80975dc11186246415070..3d86e53a57f037ea9931834a3707ac8ddb324b5c --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb index 231ec6e1b84117dabb4418e72e900c5a7f8602e0..3a282506ef499110dbf152af402f47a3d7ad2313 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..2dc340379936e76892d18b71819a6e8260b65863 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..51f5dfe2270333f58e7656928357aecf33a70d97 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb index 3dbedef6bb93fd107a55199eb2153ad861384d2d..75e2f7a232a3a3b14bdd9e16f5ae92daea490ffe 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb index e0b581ce3d97763e2ef3499cd6d4cdf54338a52c..f48592fa5bd62f624bb0490a30e180d3e1515692 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb index a25b326d5936f66f9a29f5276c64cc9c068b0c27..1e344106ca7e9ec2001ba363e44c34dbe9336a19 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb index 0a829a5bd278577d7a0f7cd3300ec5d8013c512d..f34ee586e256ea5342d90f4896567f6a66de5c12 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb index e304f4b331e5d5268ce8236e3424b8568d7b390b..3870d85a1f4d9fdc05e630f38a3aba4dfdab108f 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb index c9ccb7d9113492d71dc896bd2cab614b5cb38cfa..83e9b83ada7224ad1b34b19d195d0d4ce4511e6a 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cf222c4c5e3cf8ec7918c92a794bfa6ec344312d --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically + configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like + systems without manual user intervention. Autoconf creates a configuration script for a package from a + template file that lists the operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.16')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index 8dced5a5fcaa2944655c5b606ef2429d092f8fff..11720186ff5bc45f132bdf7eb14c8c9b217461d5 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index 4ce71128df49fb897310b8cf2cd42190b530561b..df3ffc4bcb2d69df5280fa3a23516c0ca9d0279f 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index e10d9467791cac1b18948d5ee5a1b986c0f81e1a..b9e7f683898f56df276bc8c4ce401cc54ae1bc42 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..675782f77b21c6fae5da97e80186cc8825ef725b --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb @@ -0,0 +1,28 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Authors:: Alan O'Cais +# $Id$ +# +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = '1.13.4' + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index 6a66db04010fc9e57b306d29931c52fb5f31f24d..bec66dfd3d4226a4c7c174b5bd641d38e934401a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index 60bb66737932bf4d2306408a006e5d3b02083de8..732b0392516a8f01f9eabf34e9850a4d817e4243 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 8b02799901f273e721e1e71e99641f19c8469a11..2e5a33ea9b8ad2228644e31b0b62ceea20fc05d4 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ef76d9727b7604ec40e7cb01043b812f868c7f1 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.14" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://ftp.gnu.org/gnu/automake'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3a06e84989090c88d86dc266614e28b384fff532 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.14.1" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..bf119a1eaf660a634baada27fbb32d78fc210dbf --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..b24d010c0ab634bd0681f7dbf1895a70d7f29805 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..067ccdbe63f0dedb0f824ff71c8e16acb7db9968 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150119' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.5'), # 20150119 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index f1ed26f41ea680e05a9c6e86c750cec3fc17470b..13ae69456f14f9b397dee2e18014a038485d63fc 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index 85a8aac89e4623fccd78a33ab448c6ff105a982f..5144a9afc901faa64dee9d0f7f8b97e9d19d113a 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index 1a8b5ec4d6cda642c348f4711b546195f4829d7e..3b963e0d7e42a1d6dd9636c168d29da03b83a077 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index 8b4d01b9b229d2e9161ea1ceca4243747d7449c4..f6a35a3dc06198a1d27febe9d36da9ae1e35768d 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb new file mode 100644 index 0000000000000000000000000000000000000000..ad986bd5761fcf97181c6da1d76c2b481707d0e8 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb @@ -0,0 +1,26 @@ +name = 'ant' +version = '1.9.3' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files + as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] + +java = 'Java' +javaver = '1.7.0_60' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +builddependencies = [('JUnit', '4.11', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb index 9dae0dc5daf6d7186b7dd9885f6260081533adb5..00d3a24d263b369ee2501a39281e1c674684391b 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'argtable' version = '2.13' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index 63f01b0750d762d36697ebd89d162db56a2588a0..ebcf12ae1b367b5c015ff8042c4810b65b648be4 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index fa8cdef744fb1b74497c2cd969b069966a47731d..cb532e1ea26f7438a0974311b1e23867c19dd050 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index 31a4a9ac6cd36f724cfc7940ca66b0656a1f08f4..1e9c1ad9809be91fef4739a3fa54858e4b755bd2 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index 4f65791b19b04440c811457a8185ba10dd829a59..3da57c79d8b016f4d12f364bccc9c278f8a08665 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb index 4abff36b045dd215d4d286760b8bd369bfaf21e8..69351c2f0fbf24a77971bea12a95ea098025ff87 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb index e562d6c9ba748c9e941c556e98ec1f3d62d0d1fa..9491e3183b3ae434dc040c4e0c0361ee88384024 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb index 575c77a9c39c65a86f5af14293af8b2f114933f9..e222e2fd03b6ec2e4f7edb8e334cf814967f3f83 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb index 29f2124f98e25401d673c36f226846b38511a5b5..feee7f7ba71fb0b23b1da98dd12a8cebad54300a 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..812915265ce18cf8220e9aa55800e9cbc684d6a5 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.1.5' +versionsuffix = '-mt' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://forge.scilab.org/index.php/p/arpack-ng/downloads/get/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..879d20e6567e049919d6ddd4c1efa9b1fa27d3c4 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.1.5' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://forge.scilab.org/index.php/p/arpack-ng/downloads/get/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..798d558246865467d774545a1605302db1b04306 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez, Wiktor Jurkowski +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Babraham Institute, UK + +easyblock = 'MakeCp' + +name = "BEDOPS" +version = "2.4.2" + +homepage = 'https://github.com/bedops/bedops' +description = """ BEDOPS is an open-source command-line toolkit that performs highly + efficient and scalable Boolean and other set operations, statistical calculations, + archiving, conversion and other management of genomic data of arbitrary scale.""" + +# this application requires GCC-4.8.x or higher +# be aware if you switch to a different toolchain +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['https://github.com/bedops/bedops/archive/'] +sources = ['v%(version)s.tar.gz'] + +buildopts = ' static && make install' + +parallel = 1 + +files_to_copy = ["bin"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bedmap", "bam2bed" , "sort-bed", + "starchcat", "vcf2bed", "wig2bed", + "gtf2bed", "bedops", "wig2bed"]], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index 6cb0f4b8184d1697be0c248eebbc960823624cfc..acb234afd439d578ab953ea06d1bdb4219d7dd63 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ["http://bedtools.googlecode.com/files/"] sources = ['%(name)s.v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index 3cb9f10e2d7db452dfb0cb7c9bac1c3e45467b5e..8b2873ae7488ba00f2f26906f9805f883958ef0f 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = ["http://bedtools.googlecode.com/files/"] sources = ['%(name)s.v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index d45afb71d95f08d7e42f3b1122e6079a08dab3f8..22c311e6750a56207f37453ea83764d37c6638df 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -17,6 +17,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://github.com/arq5x/bedtools2/archive/'] sources = ['v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..1631b47200f125c5c97b69489e6cfffc3f878dd3 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb @@ -0,0 +1,27 @@ +# Author: Pablo Escobar Lopez; Wiktor Jurkowski +# Swiss Institute of Bioinformatics (SIB), Biozentrum - University of Basel +# Babraham Institute, UK + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.19.1' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/arq5x/bedtools2/archive/'] +sources = ['v%(version)s.tar.gz'] + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..eff9f8d9ca2b0df9a535df13a0ec8e003acfa832 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -0,0 +1,29 @@ +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.22.0' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://github.com/arq5x/bedtools2/archive/'] +sources = ['v%(version)s.tar.gz'] + +buildopts = 'CXX="$CXX"' + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index 8e068d5f72f01d51d19047f41a8ffd7b31435384..a3b2575da68b89445c14c6a4e091a02782773d75 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index d458b8f3016c7e6dc2f0a36779e5c164c281454e..372422bd73829d6fbc864d3f32659cd5c3dc463a 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index fe0a286ad3d2f734ece27085850fc8f4219cf82c..06a9cd2e7e285f68e5c8a3e42999bcaef27c99dd 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index 306c46ed8fa22fe1bd7b79c4214b6543aa02e87e..b792e697b2ba44c1f6c9f4d0977a4538ab8262f2 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..7b97564a4d72ced37ae0457b52eddf821d106413 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'BLAST' +version = '2.2.26' +versionsuffix = "-Linux_x86_64" + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/release/%(version)s/'] +sources = ['%(namelower)s-%(version)s-x64-linux.tar.gz'] + +sanity_check_paths = { + 'files': ["bin/blastall", "bin/impala", "bin/blastpgp" ], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb index 0b8bf4f532fecb47ebed3b3e5a35a2c5d5969c44..f4b3245692f043df901a3b63273c501113c6020c 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb index 7cb743172e7a250eff65ad3b5a3971be7e28d94d..f1853407cc3202a2f538a218e861d70263ea7479 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb index c47027ea8a885282c107b0acd9587a3d8ec23e5f..5b8b65853973c99ffc85470f15e467827b7d0dde 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb index 90385b014882df3f30e0513be6d17f641550624a..f16f3445c0da8e255cee8a0f77381dbce561e2ce 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb index 9e1e4354ea6319eed8b1e87b1faefc89bf06eee4..d7a23abb9290cfa7a2976c684339077bd33269b8 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb index 5645d757712a5894cbcde0f08fab9ef32cc10372..44ad40f2e482382b0d03feae6c97a5a06f5b2cc8 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb index 04e98c09c5feee51a8cbee380f664550d1a2e8aa..9ae9e7de68aac698ceb97ffa8470405dc54d240b 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb index badc8f717a53d742252268325dd5c6237fdecabe..950edd8368564d97d6ca8cd951b74b085862feb8 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb index d26f9232563d6a0196353067b3d680efb0eb693f..afbf2938b8da643d2de1f4b9e58480c0d56f8082 100644 --- a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-goolf-1.4.10.eb @@ -20,6 +20,8 @@ source_urls = ['http://users.soe.ucsc.edu/~kent/src'] dependencies = [('libpng', '1.6.2')] +buildopts = 'CC="$CC" COPT= L="$LIBS"' + files_to_copy = ["bin", "blat", "gfClient", "gfServer", "hg", "inc", "jkOwnLib", "lib", "utils", "webBlat"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..e2d58bafb6395314a0d65cc6a303f5f045a39735 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , Thekla Loizou +# License:: MIT/GPL +# +## + +name = 'BLAT' +version = '3.5' + +homepage = 'http://genome.ucsc.edu/FAQ/FAQblat.html' +description = "BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more." + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = ['%%(namelower)sSrc%s.zip' % ''.join(version.split('.'))] +source_urls = ['http://users.soe.ucsc.edu/~kent/src'] + +libpng = 'libpng' +libpng_ver = '1.6.9' +versionsuffix = '-%s-%s' % (libpng, libpng_ver) + +dependencies = [(libpng, libpng_ver)] + +buildopts = 'CC="$CC" COPT= L="$LIBS"' + +files_to_copy = ["bin", "blat", "gfClient", "gfServer", "hg", "inc", "jkOwnLib", "lib", "utils", "webBlat"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['blat', 'faToNib', 'faToTwoBit', 'gfClient', 'gfServer', 'nibFrag', + 'pslPretty', 'pslReps', 'pslSort', 'twoBitInfo', 'twoBitToFa']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f6044dcecc24f8ff7342009412311871a64b60f --- /dev/null +++ b/easybuild/easyconfigs/b/BLAT/BLAT-3.5-ictce-5.5.0.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , Thekla Loizou +# License:: MIT/GPL +# +## + +name = 'BLAT' +version = '3.5' + +homepage = 'http://genome.ucsc.edu/FAQ/FAQblat.html' +description = "BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more." + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = ['%%(namelower)sSrc%s.zip' % ''.join(version.split('.'))] +source_urls = ['http://users.soe.ucsc.edu/~kent/src'] + +dependencies = [('libpng', '1.6.6')] + +buildopts = 'CC="$CC" COPT= L="$LIBS"' + +files_to_copy = ["bin", "blat", "gfClient", "gfServer", "hg", "inc", "jkOwnLib", "lib", "utils", "webBlat"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['blat', 'faToNib', 'faToTwoBit', 'gfClient', 'gfServer', 'nibFrag', + 'pslPretty', 'pslReps', 'pslSort', 'twoBitInfo', 'twoBitToFa']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb b/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb index cd332e88ad50a2328673f460fd9b9a760ed0babb..ba1d06a7ffe10b84715c2d2f842afc0d19b58c9d 100644 --- a/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb +++ b/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb @@ -10,12 +10,13 @@ description = """BOINC is a program that lets you donate your idle computer time toolchain = {'name': 'goolf', 'version': '1.4.10'} -# Only through git, make your own tarball. +# only through git, make your own tarball. +# e.g. git clone --depth=100 --branch client_release/7.0/7.0.65 git://boinc.berkeley.edu/boinc-v2.git boinc-7.0.65 # see http://boinc.berkeley.edu/trac/wiki/SourceCodeGit sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('OpenSSL','1.0.0'), + ('OpenSSL','1.0.1f'), ('cURL','7.29.0'), ] @@ -23,11 +24,12 @@ with_configure = True preconfigopts = './_autosetup &&' configopts = '--disable-server --disable-manager --enable-client' -files_to_copy = [(['client/boinc','client/boinccmd'], 'bin')] +# copy boinc and boinccmd binaries +files_to_copy = [(['client/boin*[cd]'], 'bin')] # make sure the binary are available after installation sanity_check_paths = { - 'files': ["bin/boinc",], + 'files': ["bin/boinc", "bin/boinccmd"], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb new file mode 100644 index 0000000000000000000000000000000000000000..599b616ab9f4639c8a82e2021dc59c236d688fa4 --- /dev/null +++ b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb @@ -0,0 +1,43 @@ +easyblock = 'MakeCp' + +name = 'BOINC' +version = '7.2.42' +versionsuffix = "-client" + +homepage = 'https://boinc.berkeley.edu' +description = """BOINC is a program that lets you donate your idle computer time to science projects + like SETI@home, Climateprediction.net, Rosetta@home, World Community Grid, and many others.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +# only through git, create your own tarball. +# e.g. git clone --depth=100 --branch client_release/7.2/7.2.42 git://boinc.berkeley.edu/boinc-v2.git boinc-7.2.42 +# see https://boinc.berkeley.edu/trac/wiki/SourceCodeGit +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('OpenSSL','1.0.1f'), + ('cURL','7.34.0'), +] + +builddependencies = [ + ('libtool','2.4.2'), + ('make','3.82'), + ('pkg-config','0.28'), + ('M4','1.4.16'), + ('Autoconf','2.69'), + ('Automake','1.14.1') +] + +prebuildopts = "./_autosetup && ./configure --disable-server --disable-manager --enable-client &&" + +files_to_copy = [(['client/boinc', 'client/boinccmd'], 'bin')] + +# make sure the binary are available after installation +sanity_check_paths = { + 'files': ["bin/boinc",], + 'dirs': [], +} + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb new file mode 100644 index 0000000000000000000000000000000000000000..bc81b334dec4c3bdcc913b7c81d7d91bccc4ba5d --- /dev/null +++ b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb @@ -0,0 +1,43 @@ +easyblock = 'MakeCp' + +name = 'BOINC' +version = '7.2.42' +versionsuffix = "-client" + +homepage = 'https://boinc.berkeley.edu' +description = """BOINC is a program that lets you donate your idle computer time to science projects + like SETI@home, Climateprediction.net, Rosetta@home, World Community Grid, and many others.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +# only through git, create your own tarball. +# e.g. git clone --depth=100 --branch client_release/7.2/7.2.42 git://boinc.berkeley.edu/boinc-v2.git boinc-7.2.42 +# see https://boinc.berkeley.edu/trac/wiki/SourceCodeGit +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('OpenSSL','1.0.1f'), + ('cURL','7.34.0'), +] + +builddependencies = [ + ('libtool','2.4.2'), + ('make','3.82'), + ('pkg-config','0.28'), + ('M4','1.4.16'), + ('Autoconf','2.69'), + ('Automake','1.14') +] + +prebuildopts = "./_autosetup && ./configure --disable-server --disable-manager --enable-client &&" + +files_to_copy = [(['client/boinc', 'client/boinccmd'], 'bin')] + +# make sure the binary are available after installation +sanity_check_paths = { + 'files': ["bin/boinc",], + 'dirs': [], +} + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb index 4a6ef0c31de38475c53da2c3f5808f30eecc7c58..5bb04589642be93ccf0590414dcb7178bf4d58d6 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb index 111de5e9ec016ad1a1053070cb9be155abcacc62..88e63bb1aeff6c1ee609045b4a1e96e7153c7146 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb index 8384386ee6c50ab17cbc136af04add418d4ae5b4..9ff15e2434caaf21c5196f5662a37d19fc39e3cc 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb index 560bbac34f395bd56ace50bdb201769420fc6948..bd449ad58fcae97f93ade118956334d743a38330 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb index 60df95c84acae03da5e91662b14a978e184494d3..6c6c1aff71d851adf0eea52b6a77d4518144fd43 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb index 03f79756d95031098ced3c8909d1da4506cf1725..000b5950bd50b7397dfeebe2987366de7e78d6fb 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb index d9514b245036a7a3476c70ef3cc8c204e4714180..66de8f1a8625d684ca5f4552ac7e5abd38625359 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb index f2eec4ae3cc82c8c5030bfcaca2c3e12bc7f728a..860efca9e4c429c6852ee3f25f9a68e063856b3c 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb index 8ffbecad50f998e3f2124031e6175dce3841594c..b2a23aa149ae6262433599eda1a963b289b30210 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.2' diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb index d4a53daa14505bcc0c7735cf7d0e071dc31b1d5c..7cf887ea82d676aa750b8a5935761cf90ad52d34 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.2' diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb index 0863522494c73f16260f958aa4f81e730cc25535..b45858d56f58286d74e1a8f3ead4a34362decae7 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.2' diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d02188852b0208b1ca1e0a5274210ecfbbef37c1 --- /dev/null +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -0,0 +1,33 @@ +## +## This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +## +## Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +## Authors:: Valentin Plugaru +## License:: MIT/GPL +## $Id$ +## +## This work implements a part of the HPCBIOS project and is a component of the policy: +## http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +### +# +easyblock = 'ConfigureMake' + +name = 'Bash' +version = '4.3' + +homepage = 'http://www.gnu.org/software/bash' +description = """Bash is an sh-compatible command language interpreter that executes commands + read from the standard input or from a file. Bash also incorporates useful features from the + Korn and C shells (ksh and csh).""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] + +sanity_check_paths = { + 'files': ["bin/bash"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb new file mode 100644 index 0000000000000000000000000000000000000000..49c78aa1c48b4e74c221c0c12ddc0c01416639f6 --- /dev/null +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'BayesTraits' +version = '1.0-linux32' + +homepage = 'http://www.evolution.reading.ac.uk/BayesTraitsV1.html' +description = """ BayesTraits is a computer package for performing analyses of trait + evolution among groups of species for which a phylogeny or sample of phylogenies is + available. This new package incoporates our earlier and separate programes Multistate, + Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt + a finite number of discrete states, or to the analysis of continuously varying traits. + Hypotheses can be tested about models of evolution, about ancestral states and about + correlations among pairs of traits. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.evolution.reading.ac.uk/Files/'] +sources = ['BayesTraits-Linux-Intel-V1.0.tar.gz'] + +sanity_check_paths = { + 'files': ['BayesTraits', 'Primates.trees', 'PPI.trees'], + 'dirs': [], +} + +modextrapaths = {'PATH':''} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb new file mode 100644 index 0000000000000000000000000000000000000000..159ed9b248090a70f22d206eb23991b47a78f3b5 --- /dev/null +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'BayesTraits' +version = '2.0' +versionsuffix = '-Beta-Linux64' + +homepage = 'http://www.evolution.reading.ac.uk/BayesTraitsV1.html' +description = """ BayesTraits is a computer package for performing analyses of trait + evolution among groups of species for which a phylogeny or sample of phylogenies is + available. This new package incoporates our earlier and separate programes Multistate, + Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt + a finite number of discrete states, or to the analysis of continuously varying traits. + Hypotheses can be tested about models of evolution, about ancestral states and about + correlations among pairs of traits. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.evolution.reading.ac.uk/Files/'] +sources = ['%(name)sV%(version_major)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ['BayesTraits', 'Primates.trees', 'Mammal.trees'], + 'dirs': [], +} + +modextrapaths = {'PATH':''} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..b396cebf89e962bb3e2542441303ff3edae0adac --- /dev/null +++ b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'Beast' +version = '2.1.3' + +homepage = 'http://beast2.org/' +description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using + strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies + but is also a framework for testing evolutionary hypotheses without conditioning on a single + tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted + proportional to its posterior probability. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://github.com/CompEvol/beast2/releases/download/v%(version)s/'] +sources = ['BEAST.v%(version)s.tgz'] + +dependencies = [ + # this is not mandatory but beagle-lib is recommended by developers + # beagle-lib will also load the required java dependency + # if you remove this you should add the java dependency + ('beagle-lib', '20120124', '',('goolf', '1.4.10')), +] + +sanity_check_paths = { + 'files': ["bin/beast" ], + 'dirs': [] +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-goolf-1.4.10-Perl-5.16.3.eb index e0f3e3aa78c5305490d6fabb65d84871226063f5..35b31e9ad8b4f6ad8b5dbb2940125a24ad74b0e6 100644 --- a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-goolf-1.4.10-Perl-5.16.3.eb @@ -9,7 +9,7 @@ description = """Bioperl is the product of a community effort to produce Perl co toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'] +source_urls = ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-4.1.13-Perl-5.16.3.eb index 772e359455c337c0e2f17ec645c409e6e21b0b55..f16cc0e7a36d5844995a0593589f563e53e878ca 100644 --- a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-4.1.13-Perl-5.16.3.eb @@ -9,7 +9,7 @@ description = """Bioperl is the product of a community effort to produce Perl co toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'] +source_urls = ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-5.3.0-Perl-5.16.3.eb index 644fe3ba68dd25b0990636642cd0c47aee7a6216..f989bdd896cb105756ad78d1e2f7b9bf35eae543 100644 --- a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-ictce-5.3.0-Perl-5.16.3.eb @@ -9,7 +9,7 @@ description = """Bioperl is the product of a community effort to produce Perl co toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'] +source_urls = ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.923-ictce-5.5.0-Perl-5.18.2.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.923-ictce-5.5.0-Perl-5.18.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..b2c6b6f6298df908842ad858b9bac0831eca1a33 --- /dev/null +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.923-ictce-5.5.0-Perl-5.18.2.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'BioPerl' +version = '1.6.923' + +homepage = 'http://www.bioperl.org/' +description = """Bioperl is the product of a community effort to produce Perl code which is useful in biology. + Examples include Sequence objects, Alignment objects and database searching objects.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.18.2' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('DB_File', '1.831', versionsuffix), +] + +options = {'modulename': 'Bio::Perl'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb index 4422c069eff8c5c51847fd325a086d1a237ffe12..ad34232c285d08d4c18a5ca4bc800fe5a096aff7 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb index 31520c710c4dd7cc9b056221e5dd3f049e8a3724..f48960ba9ce22384ea2cc56a8f1f4e06515e32ef 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb index f26bcc8110af539dbcea3f4d96ff8c1e2a43a429..a6612ed9d7e2cc6b5198339cc2786455a2b6ec62 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb index aba6ec1fef6d35c2c7f70c7edb9faebfdada9db2..5c91aa97e5e5e775125fe148716afe47233e21cc 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb index 10fc9ef68a64bdd45460c1fe63f04c0827721bf8..c97b614281d43686327d668cf6899f28fed55475 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb index 1a58cb138ee5e7c72ea77e13f9120af3e636f6dc..31688560eb198b924d178ac0b33b4f925f9f0f7f 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb index dd1af5cd2f20a31fa6c26fedde753b6751875e0c..f799cc2a0801f196a343027712841f1a587ead57 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb index 9c14def61f13d705337e4c3ca6f26dbd342acaac..3257ed4046b8f6095d65137036e8fae626facac2 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb index f025220a4396861e0fde794b830967e5b62532ae..37e75810f25a0bd4be3889da21ae397166ed15d9 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' @@ -8,7 +10,7 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'ictce', 'version': '5.5.0'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] +source_urls = [GNU_SOURCE] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f58f02694289eb962045a5f720f36e66c71e7ca --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.5' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.16')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb index 1b1d71408750449aaad958cb355e246dc0568aba..61c5b60ca1d8e713e57b55860381767f60a0a6d7 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' @@ -8,7 +10,7 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'iqacml', 'version': '3.7.3'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] +source_urls = [GNU_SOURCE] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb index 5954b4a5809920027637886f768b5cf1b3a63b5f..c9f6762114c21e6e825adbd036d2702ca83a9a71 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.6.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb index cbdb121a82bfc9cac625c1721f8b9544fbcee16f..a673f202fbc340298c5353af98910edaf609c217 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.6.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb index 8744cbb56a1eac9af6e00f3a510796102e83d81e..bb91556cecfb1e4c3b894f676c07953ebfe699a5 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb index ec2d8ec2316cd4453764be22ba4ff2965ef9c51d..0916b6237c91a72312995a0cb5fc3ececf27e234 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb index 585ea2ac9665ef1a188b6da1669a9498f6a2dfdb..1806f695f4f244cd8cf837dec46017f860dbc106 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb index e3ee605bb0901d47377a999e41e850bbf0d84c60..1e8f69087b71cb5e426ad2a7650d96fd90b9706b 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb index f8873239d9b166e0dab70089b1b0e0f003171401..7f170a71a49eede3cf2d392c150e02a8e2b8c2fb 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb index 8be6a9e305aaafa1bec39c9a0dbc89e9b285526e..aeaa2cf444487e8656df439897eecabd955f1015 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..de2474fb3b4a1849be5c0c5017821d285b3eb1b4 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.7' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar +into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.16')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb index 8043e00d5c8aa0f0821ff18361ddacfdb4f85de6..1345612aec5751bfa28e80b6b940f56b3e8cc8e2 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb index c39d8c1c1803c69452839608ee91c6b9a707e450..025c3d68aa456677fbde4cf98d1d4f5fcd72cde9 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' @@ -8,7 +10,7 @@ description = """Bison is a general-purpose parser generator that converts an an toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] +source_urls = [GNU_SOURCE] builddependencies = [('M4', '1.4.16')] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb index 1c8ec7242c86b9400ea4e160be4d1e5b6abf375c..03b08d09a6999a6619d8b1e8f0b7e2b4265423cf 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7cc3238fc2ecb9f9f9c8bd9e99ce1febbb3ab2f2 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.7' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb index 9cbcbb84e120863329a4921473904e98249f3713..b9514c8e33af784fbeeb622db741c1426b8dddeb 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb index 83da9c3f176dc6adea7d7ac7387fc0e1c809388a..be67b39a9aee9d7f26dfb198ad25fbbd64383001 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7.1' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7.eb index e1f74e51581359eff8f2e71fa821be0dd58ad16a..137d2f967e118cc6bb3222dabbd0f68478b33e67 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..df304cae6890bc40add35648c802b652746bbdbb --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..01778cb7cb814dfd5ab65f71bdd2b59f5fbe498c --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..675e098b5e956e767fa34cfa49ab23f167c7449e --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c846b08785bdc3798d58fd9cc81867a1a8a211d4 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..78a6fda211b090ec744c55e19603b68b7a482822 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.3' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..82b02fc155de3aa2c5595e7d2e8547a9df397f84 --- /dev/null +++ b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "BitSeq" +version = "0.7.0" + +homepage = 'https://code.google.com/p/bitseq/' +description = """ BitSeq (Bayesian Inference of Transcripts from Sequencing Data) is an + application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) + data and estimating differential expression (DE) between conditions. An advantage of this + approach is the ability to account for both technical uncertainty and intrinsic biological + variance in order to avoid false DE calls. The technical contribution to the uncertainty comes + both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://bitseq.googlecode.com/files/'] +sources = [SOURCE_TAR_GZ] + +# put here the list of generated executables when compiling +list_of_executables = ["convertSamples", "estimateDE", "estimateExpression", "estimateHyperPar", + "estimateVBExpression", "extractSamples", "getFoldChange", "getGeneExpression", + "getPPLR", "getVariance", "getWithinGeneExpression", "parseAlignment", + "transposeLargeFile", "getCounts.py", "extractTranscriptInfo.py"] + +# this is the real EasyBuild line to copy all the executables to "bin" +files_to_copy = [(list_of_executables, "bin")] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index 15eee3a6b7e26cd74e4d840c2396e6fd1f5f1738..41a9f3fdef693b5629a9595e1aace9e754bf7517 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index 00dc69f950f63b3c875ff6674e2f868def23deb8..28f31121d6edf50b5a30bb35a740a8ed6b5f3298 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index b0b53849146a4c335c57dafe1ab949517c7d5312..7b2aca1bc7457e91afa1c114a688f167bbd27bcb 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index 23c215e2493bfaf3be37356c3cd406fc2a0e829d..80cfb940afd439f8157acba3a2fcead5651cf9d6 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..93386e296d8c731b1d6653507c70095123bb4d54 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb @@ -0,0 +1,24 @@ +name = 'Boost' +version = '1.47.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = ['boost-%(version)s_glibcxx-pthreads.patch'] + +dependencies = [('bzip2', '1.0.6')] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel','zlib1g-dev')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 1f126f864c495a0c2438cd6ccb2979e49e8e2b37..3a7a1118355b1bcaa3824088ef417949ffc975cf 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb index b3a59b3da4cf8da53afea1d3a587a0f11a77ff91..c961d98fd81d0dcc2d3c9564ae54c627f9aaf80c 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb index ff19195a78dffaa8b5117a9d0165e17283591fb1..99ad6a98dc2cfee870d121e73353eb50a1539c37 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb index 691de41d3890c129ea4fdcad378aece63c728cd2..7e087bb042e754059481cb31070efb5e3f38f958 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb index 8126fb3ad2c9706f48edc598f3fa5d0ed4cdbc43..3988e42a3d0263505efcd5b707a709ce3ec0c1b9 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb index 98925b48eee70f48eb2afd2b4161308cd573a1d1..6d898a6437a30dba725b798cd93463d2a2817e96 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] #maxparallel=1 moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 7152275e205208c7d8c86ea6a9997fdbd4b5f91e..d48b1c70a11c138cb458c383baf35e6cd4dc3801 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb index 0d347ab5d3586da595a2661cce10a9a3c059d2b8..cb53c502fcf6bd0fdf889ded00a12e566c9b9fa7 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb index 029cb1d76d2450062d4b85893d1d5b2a239054a7..313d9d65c46c2e5d09875c222a4d380907b23a1f 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb index 3a8a75e03b8c7209cd62bf130e5d98c3303f1be9..f5cc38969b0cd92e543e7e1845f9b464c91e5747 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb index 966f274c6340a3cdee71992ec3783fe1c80f1dd2..b323695956a98552016bb7683495d8e60510f3cc 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb index 00e06c63dc99384b9b44bd60b959ff39fe61df1a..709900a2b0db7413075a1c7d50ae482beeff7596 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb index 80cde9362bd0d37b8422eaadfd5c9974e78ae69e..edcf74cbec7b0d9f0f2fdbc31299d4451b9386c9 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb index eed4945ae39e00f01b5331aabd9788eb4927bd2a..97d8361b7ac5241d7f3fabda2a954e228814f676 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb index 215891c6bf3b3b45c5e8aec610af6cadf2c432cb..13e799e0760871ac02b0254c68437ae914e03084 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb index 62a833ed99cb0f6a90ea5f0ac7b4835d10353f9e..b49e9e58e9021ec6f2b1a74d19dab4c529abfd38 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb index ac4dad53b0d4ba9d2a9ad4defabcd8298524d699..403498d6f458c2dcd6c6e567700b1923e7fb0a2e 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb index 47ee22121da4c2189d042d04eec59e4be694095d..6e295b56b64186b40ea84f54eb25308ed35e3106 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb index 3e2f793ace97b645c0e9c6aa973bb27c2d429794..354f0c72605ce48c02972a5c86a33e74f9942082 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb index eb3ab8ea9ae24268c8e0065f980839137f004e8f..fad7f26ba91bd8d3e0959b4be7620ba8946e42b8 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb index 3f732b50e8301fef75b8bfcbeaf9462e821c9ccf..472f8aa41f853e3a6eca237bc5189c1659349f08 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb index 5bff64b1fe7bb5c30535163862c629ae4d40d2e0..b82fa3aec47588d8593133b25bfd700303a3fa0f 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb index ef9aaeecb5de38cd601f66015b980cfd6335385c..e55911ea5956bcd2d1c651b2a282cfbb54f7de9b 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb index eedc4e59549018846f703dd8da832c551365c344..a7526a054e181d7f95f9c84a1ea8075d92fa4e79 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb index ef5291b851199c50f08f27d2f3458837bfe99551..c3ef0179641b762130af8d66662444d71f65f1b8 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d078f75268b921eb796823c3d035c0fb815f11b --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb @@ -0,0 +1,22 @@ +name = 'Boost' +version = '1.53.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +dependencies = [('bzip2', '1.0.6')] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel','zlib1g-dev')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..87a7b60a53b52d85ed73016a85ad7c59466e1a2b --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,28 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = ['intellinuxjam_fPIC.patch'] + +pythonversion = '2.7.6' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel','zlib1g-dev')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..7c8f276e22f964a858dc830322cbbb0c8e865d37 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,28 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = ['intellinuxjam_fPIC.patch'] + +pythonversion = '2.7.8' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel', 'zlib1g-dev')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..39ae5a52a46c19071732360ee60d5f4224d005d5 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.8' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb index 1556a38d3c5dbdef32b232ccd1a681a473a8f882..fb5ddf01857867a9af2fac0eff274ba480b33b8c 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb @@ -16,6 +16,6 @@ configopts = '--without-libraries=python' toolset = 'gcc' -osdependencies = ['zlib-devel'] +osdependencies = [('zlib-devel','zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..1c2ebd212d9ee7e9aef71812fb790e967ba36cec --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..84fbb7d38c94a5542d42e0f557cfd91df8452865 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/boost-1.47.0_glibcxx-pthreads.patch b/easybuild/easyconfigs/b/Boost/boost-1.47.0_glibcxx-pthreads.patch new file mode 100644 index 0000000000000000000000000000000000000000..f758b93a887d8c00490d78beced5eb29eb7a6ce5 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/boost-1.47.0_glibcxx-pthreads.patch @@ -0,0 +1,11 @@ +--- boost/config/stdlib/libstdcpp3.hpp.orig 2014-05-27 22:32:33.070983000 +0200 ++++ boost/config/stdlib/libstdcpp3.hpp 2014-05-27 22:32:49.609032000 +0200 +@@ -33,7 +33,7 @@ + + #ifdef __GLIBCXX__ // gcc 3.4 and greater: + # if defined(_GLIBCXX_HAVE_GTHR_DEFAULT) \ +- || defined(_GLIBCXX__PTHREADS) ++ || defined(_GLIBCXX__PTHREADS) || defined(_GLIBCXX_HAS_GTHREADS) + // + // If the std lib has thread support turned on, then turn it on in Boost + // as well. We do this because some gcc-3.4 std lib headers define _REENTANT diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index c5f6ee7efb2b7d1c0132bb85c48dd2fc586a80bf..89e89457faf3f5dae39a69318f38edc2ebd1ed05 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index 74d50ac9bb870d3ed916f7695b12694c0147e231..e98e0de64efa08d6b0f372b87b72c6b72d7a12ce 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index e5f69bc7008ea956ed641170803597dd2689004f..ffd1114704c6633461a5ef0905857764218940a7 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index e12d98205c5e13aa7b3087bc6328b04683179e15..f08ff35329d3a290a51dcc2c930183b5d0b23fa4 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..ae75b8cebd5cc31303f618a15ba84d9f2bd2ef5c --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'Bowtie2' +version = '2.0.5' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-source.zip' % (name.lower(), version)] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), + "doc", "example", "scripts",] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add scripts folder to $PATH just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..640a7f6d8391e83d33033b52ca7070a5d0fd7800 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'Bowtie2' +version = '2.0.6' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-source.zip' % (name.lower(), version)] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), + "doc", "example", "scripts"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add scripts folder to $PATH just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..93890f908fea8e1b40e2018e9066201cc30e9d6e --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb @@ -0,0 +1,35 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'Bowtie2' +version = '2.1.0' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-source.zip' % (name.lower(), version)] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), + "doc", "example","scripts"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add scripts folder to $PATH just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..975220fa3469e3dbded69fddec56b13deedc8be6 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb @@ -0,0 +1,28 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Bowtie2' +version = '2.1.0' +altversions = ['2.0.0-beta6', '2.0.0-beta7', '2.0.1', '2.0.2', '2.1.0'] + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """Bowtie 2 is an ultrafast and memory-efficient tool + for aligning sequencing reads to long reference sequences.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +# note: SOURCEFORGE_SOURCE constant doesn't work here because of bowtie-bio used in URL +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] +sources = ['%(namelower)s-%(version)s-source.zip'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..6dbb873164f05a32c1a0d1efb909e62d46184b7d --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'Bowtie2' +version = '2.2.0' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-source.zip' % (name.lower(), version)] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "doc", "example", "scripts"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add scripts folder to $PATH just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..83794c9d53ecc8da483acb8edaa2f557e3e28744 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'Bowtie2' +version = '2.2.2' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-source.zip' % (name.lower(), version)] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add script folder to path just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..1a8d964de17d123d60c7f7124c483fdf31cde9f8 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team + +easyblock = 'MakeCp' + +name = 'Bowtie2' +version = '2.2.4' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add script folder to path just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb index 5d4df914d374c0c2a1df79de17f7b32becd3c24c..c86e6e0a3b3c96b413e359706c0ff7cd6170cae9 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb index 4243fd37f2aab2ec7fca9c5e3c073cd97c442df7..4398ec51503668b1e52d6907e1d74760b7d797b5 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index 88a261298ea61420c6aa44503cee000535fd6fe4..523b1ad59c890fc436fdc2dd4f8354ffc1f94b1e 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbFTP' version = '3.2.0' @@ -27,7 +29,7 @@ source_urls = [homepage + 'dist'] start_dir = 'bbftpc' -makeopts = "CC=$CC" +buildopts = "CC=$CC" sanity_check_paths = { 'files': ['bin/bbftp'], diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index 591b016287b4d7970f12485f44eba8a0f2cde9a7..b3183258a9f80295b1c957ce8efcd3a5ca831c46 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbFTP' version = '3.2.0' @@ -27,7 +29,7 @@ source_urls = [homepage + 'dist'] start_dir = 'bbftpc' -makeopts = "CC=$CC" +buildopts = "CC=$CC" sanity_check_paths = { 'files': ['bin/bbftp'], diff --git a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb index e8436794bb9e4fb4b7c2c05b2d29131a04e1d55a..cf3d332d4be4367799827e87cd4fc5b552c203dc 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbftpPRO' version = '9.3.1' diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index 911ddc3eafb560dc2b60cc79d72b7bdd5c4666c8..81abdbbdb7a70590486c2ce06adedfb3725f5658 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index 60091a3fe97531c267372663abba590a92c3901e..7f34d18683617837c091b6d408b5281834af734d 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbftpPRO' version = '9.3.1' diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index a8c6a7e75602cf303e5399b62ae2dc8c2c5ec813..8017f38954ab778889f1c51e5c63a25378024af0 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbftpPRO' version = '9.3.1' diff --git a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d9c14913b31a4c843abf80d2a0e18bb5b0b065fa --- /dev/null +++ b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +## + +easyblock = 'ConfigureMake' + +name = 'bc' +version = '1.06.95' + +homepage = 'https://www.gnu.org/software/bc/' +description = """bc is an arbitrary precision numeric processing language.""" + +source_urls = ['http://alpha.gnu.org/gnu/bc/'] +sources = [SOURCELOWER_TAR_BZ2] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +dependencies = [ + ('libreadline','6.3'), + ('flex','2.5.38'), + ('Bison','3.0.2'), + ('texinfo','5.2'), +] + +configopts = ['--with-readline'] + +sanity_check_paths = { + 'files': ['bin/bc', 'bin/dc'], + 'dirs': [], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb index a957f3428f180addafbf4df57e9c00890c740ff8..8cc9ec017ec78c1bef9a859ec5ca8b03896d3a65 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb index 073b6bae5ca03acc4d31eb72901eb16d7c67fb8c..6ce8bc4c642722e89ff8fcdbb5f2d073d21f9b1b 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb index de5d0fcdf9dab61b6044b58538ff0ef2c1aa7b5c..1a9b8e86f18277dd2ae2a7e88b4b3b6ca01b6b38 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb index e1bcb81951fa232dd15fc5366220b1822d35086b..971aefa649680e1c68953d04ff39c24c8c751b04 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index 24e4efa2360cbb3bf8dd59d95d570b250395fbab..6d0b4d9315d4c2ad98fa5f00b926e8d8b084b799 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.22' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index bf436928119ec730d52f6e57e931663d7cf5b511..129afa50d15cd899b9af99c787be5761b36e06bc 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.22' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index e7bcf8437db56d2759f76522028200b61a7201f5..98ff0c9aefe57dd5b08c6f0989a451b0132b70fb 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.22' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7e0429c8a13a77835fb99305727e9e8e67cb2dbb --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.24' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils-2.22: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'foss', 'version': '2014b'} + +dependencies = [ + ('zlib', '1.2.8'), +] + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..35ffa05491581b0981afabfd12de4c06677aff95 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.24' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils-2.22: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'intel', 'version': '2014b'} + +dependencies = [ + ('zlib', '1.2.8'), +] + +# disable warning/error #175 ("subscript out of range") +buildopts = 'CFLAGS="$CFLAGS -wd175"' + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..e44a4bc4f7165314b19c49c8f82686da5432a9a2 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.25' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [ + ('zlib', '1.2.8'), +] + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 8ab364e15a04e6202e055fbe7e414ad5e43a0b39..0a0256d97dd23a00ce548bfb222cc68afa048b17 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index 4afc6c575c0680dca80bca28bae40de7bbbf391d..d8d026cace641bf05c38c8966de152381b03b889 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index 0586db611f922b10b67063d287a21382c11dd19f..878f45a16dad588f1cb7b26eedbb3fe519415f1d 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index ee98977252fb6083b4486e72da66ccd1f91af8a0..63eda1f427e0fa1a3d3c880752cbd5c4f15690db 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb b/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..5bba6900603009a935a6cabd625f9265470dd4b6 --- /dev/null +++ b/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb @@ -0,0 +1,27 @@ +easyblock = 'CmdCp' + +name = 'bsoft' +version = '1.8.8' + +homepage = 'http://lsbr.niams.nih.gov/bsoft/' +description = """Bsoft is a collection of programs and a platform for development of software +for image and molecular processing in structural biology. Problems in structural biology +are approached with a highly modular design, allowing fast development of new algorithms +without the burden of issues such as file I/O. It provides an easily accessible interface, +a resource that can be and has been used in other packages.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'openmp': True} + +source_urls = ['http://lsbr.niams.nih.gov/bsoft/'] +sources = ['%%(name)s%s.tar' % '_'.join(version.split('.'))] + +cmds_map = [('.*', "./bmake omp fftw=$EBROOTFFTW")] +files_to_copy = ['bin'] + +sanity_check_paths = { + 'files': ['bin/brun', 'bin/bshow', 'bin/bview'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb index 3e399ef780f48fd659413f3cea277091253f5c62..42ae4e574e029307a140ffbae9ca690566478a09 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb index 8b8782fe4b6e01e7783dd9faf6e6533c72808586..f53938591a3fffaa81bf039089e6b6206bcb7b02 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb index 9b30eede50bc4ed214347e4afc984b0ba4c9bdef..b2e4ab6e2443e27bae4784d9329a0407d905ec61 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb index 3f0c68f0c2562fcb2dbcabe096d8e7d29314240a..39def10fe537b29379e113a14a85885aa2bb074a 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a7003c26f063df2e099d790eae96b9b45a15b8b --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..acd3dde7bbd0adcdc7fb7f2fe95cfd9a82b30b1c --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4b91fea95d99eb19a47384004d131e72d304fd75 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..db848603791d1fe6069f05a96f9a4c527399e8b0 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-goolf-1.5.14.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..3192e476fca4581cf415c7ff65e3155d6c90683f --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-goolf-1.5.14.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-6.2.5.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..c2e0a1e30048ef18db9568943027552892309000 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-6.2.5.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-7.1.2.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..44aaf6f434ec0a2bb5c1fe50e3bd9bda5a0b1af9 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-7.1.2.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014b.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..97e3186334d9d3c68dcd53264d79edd124be86ce --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014b.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ab2c3867d56bce9836fe3e39f33e317951cc8f9 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CBLAS/CBLAS-20110120-iqacml-3.7.3.eb b/easybuild/easyconfigs/c/CBLAS/CBLAS-20110120-iqacml-3.7.3.eb index 56afb28ccf753792ed63fe38c4dac6bd09fe836c..8b1c96dd94e5fca2432db350077014f9eba7df1f 100644 --- a/easybuild/easyconfigs/c/CBLAS/CBLAS-20110120-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/c/CBLAS/CBLAS-20110120-iqacml-3.7.3.eb @@ -12,7 +12,7 @@ sources = ['cblas.tgz'] patches = ['CBLAS_shared-lib.patch'] -makeopts = 'all shared' +buildopts = 'all shared' # parallel build fails occasionally parallel = 1 diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb index 68eb09eb8e446469f994bda17b46b1c5eb1e98bb..d575fbe8958d94bb0deeaf2c2e962dbb64e609d7 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CCfits' version = '2.4' diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb index ff0f7d035c1e11b93139cd55fe657adf42b61246..3375f207b28fe58286e1db89d358790e097b4fcb 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CCfits' version = '2.4' diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb index 51afa00583fc3251ac2e5f4cd15cdcb0256b4847..a344cd2ac08de17022f790c32cce505fbcae9b67 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CCfits' version = '2.4' diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb index 2f9930c9c4fb7407265d4249eda7c11ae01cf903..5c78fcfbe54f45c0514ab1f6b99dde2293080bc7 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb @@ -20,11 +20,15 @@ representative sequences as output. In addition cd-hit outputs a cluster file, d sequence 'groupies' for each nr sequence representative. """ toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'openmp': True} # eg. http://www.bioinformatics.org/downloads/index.php/cd-hit/cd-hit-v4.5.4-2011-03-07.tgz sources = ['%(namelower)s-v%(version)s%(versionsuffix)s.tgz'] source_urls = ['http://www.bioinformatics.org/downloads/index.php/cd-hit/'] +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + binfiles = [ "cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-%s" % ''.join(version.split('.')), "cd-hit-2d-para.pl", "cd-hit-div.pl", "cd-hit-para.pl", "clstr2tree.pl", "clstr_merge_noorder.pl", diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb new file mode 100644 index 0000000000000000000000000000000000000000..f2058ca8b6c1abbfb552e771f05d5b94508769ec --- /dev/null +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "CD-HIT" +version = "4.6.1" +versionsuffix = "-2012-08-27" + +homepage = 'http://weizhong-lab.ucsd.edu/cd-hit/' +description = """ CD-HIT is a very widely used program for clustering and + comparing protein or nucleotide sequences.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'openmp': True} + +source_urls = ['https://cdhit.googlecode.com/files/'] +sources = ['%(namelower)s-v%(version)s%(versionsuffix)s.tgz'] + +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + +# put here the list of generated executables when compiling +list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] + +# this is the real EasyBuild line to copy all the executables and perl scripts to "bin" +files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt" ] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb new file mode 100644 index 0000000000000000000000000000000000000000..83b5369b717740170ea409eb5aa81bf359a353a8 --- /dev/null +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "CD-HIT" +version = "4.6.1" +versionsuffix = "-2012-08-27" + +homepage = 'http://weizhong-lab.ucsd.edu/cd-hit/' +description = """ CD-HIT is a very widely used program for clustering and + comparing protein or nucleotide sequences.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'openmp': True} + +source_urls = ['https://cdhit.googlecode.com/files/'] +sources = ['%(namelower)s-v%(version)s%(versionsuffix)s.tgz'] + +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + +# put here the list of generated executables when compiling +list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] + +# this is the real EasyBuild line to copy all the executables and perl scripts to "bin" +files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt" ] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb index 0362af4aee293a4c3917b595c08d1522215f03ba..cdb73d31aba343aa1514c6de00b38a2fa12a9307 100644 --- a/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CDO' version = '1.6.0' diff --git a/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..39193c4070179f680a4c9c9f82ac976ae170d6bf --- /dev/null +++ b/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'CDO' +version = '1.6.2' + +homepage = 'https://code.zmaw.de/projects/cdo' +description = """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://code.zmaw.de/attachments/download/6764/'] + +dependencies = [ + ('HDF5', '1.8.10', '-gpfs'), + ('netCDF', '4.2.1.1'), + ('YAXT', '0.2.1'), +] + +configopts = "--with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF" + +sanity_check_paths = { + 'files': ["bin/cdo"], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..6709e178016a6cc821e87bf3b0b94f8a473e3fef --- /dev/null +++ b/easybuild/easyconfigs/c/CEM/CEM-0.9.1-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "CEM" +version = "0.9.1" + +homepage = 'http://alumni.cs.ucr.edu/~liw/cem.html' +description = """ CEM: Transcriptome Assembly and Isoform Expression Level Estimation + from Biased RNA-Seq Reads. CEM is an algorithm to assemble transcripts and estimate + their expression levels from RNA-Seq reads. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://alumni.cs.ucr.edu/~liw/'] +sources = ['%(namelower)s.%(version)s.tar.gz'] + +dependencies = [ + ('GSL', '1.16') +] + +start_dir = "src" + +files_to_copy = ["../bin", "../demo"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['bed2sam', 'bed2gtf', 'comparegtf', + 'gtf2pred', 'isolassocem', 'pred2gtf', + 'processsam', 'sortgtf']], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb index 68327a6464fb3041d4bf280c7550cb4429372ead..3373480b9bbe34c02a1eaf0e66ec6d568eb39f34 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb index b951700ab849e64695cbc31714928a78a900a20a..7086648457b854c03f246587035bb64bf28ab602 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb index 28289da1097cf796b4d89693c38de6585ceb5142..bbd4471f375f21c0f5594a921cd9bda0f9a235ba 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..acdf7bfb8dfe1dc7b3db02fd80b42a9d17d350f9 --- /dev/null +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CFITSIO' +version = '3.34' + +homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' +description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in +FITS (Flexible Image Transport System) data format.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +srcversion = '%s0' % version.replace('.', '') +source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] +sources = ['%%(namelower)s%s.tar.gz' % srcversion] + +sanity_check_paths = { + 'files': ["lib/libcfitsio.a"], + 'dirs': ["include"], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb index 8a5facff39ededce75b0c72b690887dfc276ac1d..d48a6dc1a5fe1e41c596fc2220cea704426a4d32 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb index f9f4f41e382c0585d06a3bd51601b65bae9bd32c..44f5feeb1c5e71e441486711661d53ba4014a8b5 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb index 3585a1adbefcc0185790ded5a2d2bd68a92ae466..6d8acd7afc0dafdb5a9460beceffbc93e7fa5945 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' @@ -13,6 +15,6 @@ sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] # CLHEP compiles with icc instead of icpc -configopts = "CXX=icc" +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb index b61ee5dfbef2147d59422ccd2988b5ebd84dde85..eef627657415d537f814893eaf909b548b24301a 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' @@ -14,6 +16,6 @@ sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] # CLHEP compiles with icc instead of icpc -configopts = "CXX=icc" +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ca4fbb07d4799db93849f3752ef63c2d444aad1 --- /dev/null +++ b/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'CLooG' +version = '0.18.1' + +homepage = 'http://www.bastoul.net/cloog/index.php' +description = """CLooG is a free software and library to generate code for scanning Z-polyhedra. +That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra. +CLooG has been originally written to solve the code generation problem for optimizing compilers based on the polytope model. +Nevertheless it is used now in various area e.g. to build control automata for high-level synthesis or to find the best +polynomial approximation of a function. CLooG may help in any situation where scanning polyhedra matters. While the user +has full control on generated code quality, CLooG is designed to avoid control overhead and to produce a very effective code. +""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.bastoul.net/cloog/pages/download/'] + +dependencies = [('GMP', '5.1.3')] + +sanity_check_paths = { + 'files': ['bin/cloog', 'lib/libcloog-isl.so', 'lib/libisl.so'], + 'dirs': [] +} + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb index 6a82a35581261c584c980fbc7f365d34b1bdc91b..bde9381ad49439c6c276ed43a73f2bbb264d43fe 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb index 35d6963aa87df7dab06537e06c21c66f21481e51..c2acbcfc6f4ac8119c39ea47a3610e65c4584197 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb index c259bae35b1923c2726041ffa1e5969ad119f945..1a8e9fd163b78279d0b4818fbb67ff349a4342ad 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..feb561d760a19a07dd41ed575fb694e923902877 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = "2.8.10.2" + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb index e754b86304b1985489e7f502df407c075b4b11aa..15403aa7dc3bda9e6b05190f3c9502f3e7eb3be0 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb index f6b734a9589e071870000c7749c632dc5eec9d8e..1b047ba2a18f79e55e5396337e32ea1385031b3b 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb index 377de1135eeffc92acd33fd609b3e1284e823430..fecbbb8212a617484185a3a44a5c1fc9199b5c0e 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb index 46545e5ed3555671c036f42c01bdeaa8faaf939f..0981e4bfde38913298af4794e933eb8d068f6d5e 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb index b76602bb5c253b9736fad87e2da0e5920eaaa261..b89cf43cdf9801ef13796ddf82b8c20e08a79bdf 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.11' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb index 3b3474d82aa2d84eee56a7460879b081c78fce47..52b7ad5a1d7b741739d18d605d38ca62c7cb6146 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.11" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb index 44aa40baa347917ee687cb3a9316c765f1b3ada4..6d95f925309d6393ce1bb0cfcf4070cff63e889c 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.11' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb index 4dba02eaaa705915ab2893956d253725d01b82f0..2285dba43b853fabdf2957aab87d178b312bb2f2 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb8e6111a5fa17facebdceaf47223a93509b2f65 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '2.8.12' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb index 29decbc3786fbd211967695774bcf6613caeb450..eccd7c5a7c2555b5fd5f074a45888b558996188d 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb index 4e80c3b7395334ec34bed5702138597af3c283c7..c66410954a760651630402fd404d311f39b1dc8f 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb index 4371f8b6277495a13056aae7ad5bddb578ac2348..4fc53c9dad976d521b0000cc180188ed9cf93ef7 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb index d7c1932718ee7f32664c908d7f079121919cedaf..b38ad052b676e3d2ac57bd8ee69425ff17e1bff4 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.12" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb index 0eb9ee7abd57ee367916fe4badfaa31958b60293..ea127d1f6f4f722fe1cf7bb9c623bee165dd7487 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb index 3b0a2eaf8c9c8edd6ac6ee44fe20edfd9adb0f2b..12cd6a281604cac721322cea6aaf7800beb2e8d3 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb index 126afc121031bc41239b1ae60701f4feffbb4d30..079f24431836862c5231c6e79c067d3fd01a64c5 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb index 99d7f8a0981882bf2794f2dfcddf9a3cc8e2a717..add2700489794bff6bcd4f6345e63a895cac91f9 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb index f8ec2041f742a3b097d017aadc1a6bf7f464b127..65989c3d4157d4de827447d591842ad436df8dfd 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..3478f86d65efa2ed41b05d27e6ba2cc646be0ce5 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '2.8.12' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..48bd837709078f6375b40a3cd2f320004cdf9e68 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '2.8.12' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7749fdcd0283adfb9fb301425f96d6148b14ec9c --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '2.8.12' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb index deb5350db87e1364f8258ea97bde77e03e3a1a23..a1685498a155624f496f153cd71a1b799be1ef57 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb index 018b92f54bdf744612afe2e9783be845d7628389..40dd8432c286b2f74e25bfb05ed825ca7aedf3c4 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb index bb61485bd7211d2f1a8b0e5eff655aba882b47c6..42a5e84ae6984dd7b73ef1570bc5a7849abb8dbb 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb index 5d13e3197e0e35f507fab15445a12ab0361acbe8..46a1400329a3b3bfe6507fb8abfecdb8a28022eb 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb index 4757d18e2b38bde58ad85699a92f1d36c671891b..b3ef140ae542c15154f9bb5ff3b98af60e261172 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb index 5eaf5017a3ac9711538857804aaf361907986181..4cc60ce88ea72863e9502c3de0868c433ef11328 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb index 42fa53cb42c4dd782e123bb0c57b06ca8fca0361..e9c1cecb61c6c71de330c10991f016ea0df6f6d3 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb index a4cd6c35662bcbb015c4538f76b78fdde43ddafb..c191adadb81cf437ffe42a5084ce4cf98990a44c 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb index a05a4231d26bee089a8a0e651080d043ebdb5256..f36475bd2f245738b65bb619e1e54f9c66d05c16 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb index f3a4fc743ff7b257ae62318dbafa9bd547efc922..4357a674cf8dadfed0fd5b8c5b6cb5f553811928 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb index 308c056375b0eb8b5b3a8f7d9c2eb644560a2560..3fcf409cdaf7b203cd756841a9fb54aa434aca77 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..a55f084411278f8e8eb03dc1302e2fa8efb39848 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.0.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa4cdee8bff7c40aefa14eb7440972bc70c24050 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.0.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..82fcafc057add21d7966bbd491f89ef1040c895e --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.0.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..86c6c208691e92ce1b913fb31ea31ebda16f7983 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.0.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..ff876ee8db00e2d2eee7402f799ca17e3e4127ff --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..40eb55b4f38e44c57a701ccff783a51cb21052c3 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2e2cd53e1d70c2f7d446c0f2d65d2cc27efe137b --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.5.1' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-20131211-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.0'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch new file mode 100644 index 0000000000000000000000000000000000000000..488cd1e63187e2f1f76100e56b9298bb2450de23 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch @@ -0,0 +1,12 @@ +# workaround for ifort bug +# https://groups.google.com/forum/#!topic/cp2k/LorI2Z4pQgc +--- cp2k-2.6.0.orig/src/dbcsr/error/dbcsr_error_handling.F 2014-11-03 14:43:55.796144000 +0100 ++++ cp2k-2.6.0/src/dbcsr/error/dbcsr_error_handling.F 2015-01-09 12:40:08.052966729 +0100 +@@ -20,7 +20,6 @@ + !$ USE OMP_LIB + + IMPLICIT NONE +- PRIVATE + + ! procedures + PUBLIC :: dbcsr_error_set, dbcsr_error_stop diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e3cfc36850a065b52f8acf5700bcac6669ea73f7 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..3e863ab079a36e0705cbd06fe474450f61755d18 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-5.3.0.eb @@ -0,0 +1,33 @@ +name = 'CP2K' +version = '20111205' + +homepage = 'http://www.cp2k.org' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, + to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. + It provides a general framework for different methods such as e.g. density functional theory (DFT) + using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. """ + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +sources = [SOURCE_TAR_GZ] + +patches = [ + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch', +] + +builddependencies = [ + ('flex', '2.5.35'), + ('Bison', '2.5'), +] + +dependencies = [('Libint', '1.1.4')] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures (120/2196 tests fail with segfault) +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..613ab6767947a29c2b12b8d0aea9cac8cd563cb3 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '20131211' + +homepage = 'http://cp2k.berlios.de/index.html' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular +simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different +methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and +classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +# Uses a svn checkout from 20131211 (r13439) +sources = [SOURCE_TAR_BZ2] + +patches = [ + 'CP2K-20131211-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.0.1'), +] + +builddependencies = [ + ('flex', '2.5.37'), + ('Bison', '2.7'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures: 13/2450 segfault +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb index 09b3ccfa749750a1c13fce00de346f07a70c744e..0c5d3788c29470297299334fa92d86b8c1f54438 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://crfpp.googlecode.com/files/'] configopts = '--with-pic' -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' sanity_check_paths = { 'files': ["bin/crf_learn", "bin/crf_test"], diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb index 6ae9a6ee52a39aad25470cb2beca954f638b5836..2f6ee874d9cc9247b2d95cf7bcefe15509650c51 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://crfpp.googlecode.com/files/'] configopts = '--with-pic' -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' sanity_check_paths = { 'files': ["bin/crf_learn", "bin/crf_test"], diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb index 270d5c527e6e0c37d294b124ef18fa0e525534b2..de3ab38782899e9054978d1c23d31fd1fac84167 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://crfpp.googlecode.com/files/'] configopts = '--with-pic' -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' sanity_check_paths = { 'files': ["bin/crf_learn", "bin/crf_test"], diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb index 2f6cf7bcd70c186178bc3fc133dc4c23aa92a49d..e68b6b3fec0379bb9a773db2d7a57d491fcfbca0 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://crfpp.googlecode.com/files/'] configopts = '--with-pic' -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -finline"' sanity_check_paths = { 'files': ["bin/crf_learn", "bin/crf_test"], diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index 135fd9f4b75147ebd796f64ab67063a27f2d89df..4c8b4e861d4a8a0ca926d9c336d0620d32adc49b 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb new file mode 100644 index 0000000000000000000000000000000000000000..b7d19819664058b4592950b8e5c4e8dd61b0e977 --- /dev/null +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb @@ -0,0 +1,50 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-99.html +## + +name = 'CUDA' +version = '5.0.35' +versionsuffix = '-1' + +homepage = 'https://developer.nvidia.com/cuda-toolkit' +description = """CUDA (formerly Compute Unified Device Architecture) is a parallel + computing platform and programming model created by NVIDIA and implemented by the + graphics processing units (GPUs) that they produce. CUDA gives developers access + to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.""" + +toolchain = {'name': 'GCC', 'version': '4.6.4'} + +# eg. http://developer.download.nvidia.com/compute/cuda/5_0/rel-update-1/installers/cuda_5.0.35_linux_64_rhel5.x-1.run +source_urls = ['http://developer.download.nvidia.com/compute/cuda/5_0/rel-update-1/installers/'] + +# exhaustive list of all known Linux packages for CUDA v5.0.35 +if OS_NAME in ['fedora', 'redhat']: + system = 'fedora16' +elif OS_NAME in ["RHEL", "SL", "centos"]: + system = 'rhel%s.x' % OS_VERSION.split('.')[0] +elif OS_NAME in ['debian'] and OS_VERSION.startswith('6.'): + system = 'ubuntu10.04' +elif OS_NAME in ['debian', 'ubuntu']: + if OS_VERSION in ['11.10', '10.04']: + system = 'ubuntu%s' % OS_VERSION + else: + print "Falling back to ubuntu11.10 as default for OS_NAME=%s, OS_VERSION=%s; kindly amend this easyconfig" % (OS_NAME, OS_VERSION) + system = 'ubuntu11.10' +elif OS_NAME == "opensuse": + system = 'suse12.1' +elif OS_NAME in ["suse", "SLES"] and OS_VERSION.startswith('11_SP'): + system = 'sles%s' % OS_VERSION.lower().replace('_', '') +else: + system = 'UNKNOWN' + +sources = ['%%(namelower)s_%%(version)s_linux_64_%s%%(versionsuffix)s.run' % system] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..437ebc2ce714067269494f28778dd979d86d7925 --- /dev/null +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb @@ -0,0 +1,29 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-99.html +## + +name = 'CUDA' +version = '5.5.22' + +homepage = 'https://developer.nvidia.com/cuda-toolkit' +description = """CUDA (formerly Compute Unified Device Architecture) is a parallel + computing platform and programming model created by NVIDIA and implemented by the + graphics processing units (GPUs) that they produce. CUDA gives developers access + to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.""" + +toolchain = {'name': 'GCC', 'version': '4.7.2'} + +# eg. http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/cuda_5.5.22_linux_64.run +source_urls = ['http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/'] + +sources = ['%(namelower)s_%(version)s_linux_64.run'] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..63bd33a5ba9ff6acfa129ff1a36e30cb25e6c023 --- /dev/null +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-99.html +## + +name = 'CUDA' +version = '5.5.22' + +homepage = 'https://developer.nvidia.com/cuda-toolkit' +description = """CUDA (formerly Compute Unified Device Architecture) is a parallel + computing platform and programming model created by NVIDIA and implemented by the + graphics processing units (GPUs) that they produce. CUDA gives developers access + to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +# eg. http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/cuda_5.5.22_linux_64.run +source_urls = ['http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/'] + +sources = ['%(namelower)s_%(version)s_linux_64.run'] + +# using GCC 4.8.x together with CUDA 5.5.x is not supported +installopts = '-override compiler' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb index 3855246cda77419b8c51d3c8f2f0ffc0d6d7b6db..c2fec1c504fc757696567fd4fa1914ca4f651ce0 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..19a3bd716f9177a5ae22ef51b907e2359d25ab46 --- /dev/null +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb @@ -0,0 +1,29 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +## + +easyblock = 'ConfigureMake' + +name = 'CVS' +version = '1.11.23' + +homepage = 'https://savannah.nongnu.org/projects/cvs' +description = """CVS is a version control system, an important component of + Source Configuration Management (SCM).""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = [' http://ftp.gnu.org/non-gnu/cvs/source/stable/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['CVS-1.11.23-zlib-1.patch', 'CVS-1.11.23-getline.patch'] + +dependencies = [('zlib','1.2.8')] + +sanity_check_paths = { + 'files': ['bin/cvs', 'bin/cvsbug', 'bin/rcs2log'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-getline.patch b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-getline.patch new file mode 100644 index 0000000000000000000000000000000000000000..3d46025fe157cdb56f3af60344890b573a38759c --- /dev/null +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-getline.patch @@ -0,0 +1,39 @@ +diff -rup cvs-1.11.23.orig/doc/cvs.texinfo cvs-1.11.23/doc/cvs.texinfo +--- cvs-1.11.23.orig/doc/cvs.texinfo 2014-03-20 14:09:54.695168055 +0100 ++++ cvs-1.11.23/doc/cvs.texinfo 2014-03-20 14:10:09.206280539 +0100 +@@ -111,9 +111,9 @@ approved by the Free Software Foundation + @sp 4 + @comment The title is printed in a large font. + @center @titlefont{Version Management} +-@sp ++@sp 1 + @center @titlefont{with} +-@sp ++@sp 1 + @center @titlefont{CVS} + @sp 2 + @center for @sc{cvs} @value{VERSION} +diff -rup cvs-1.11.23.orig/lib/getline.c cvs-1.11.23/lib/getline.c +--- cvs-1.11.23.orig/lib/getline.c 2014-03-20 14:09:54.682167954 +0100 ++++ cvs-1.11.23/lib/getline.c 2014-03-20 14:10:09.175280299 +0100 +@@ -155,7 +155,7 @@ getstr (lineptr, n, stream, terminator, + } + + int +-getline (lineptr, n, stream) ++get_line (lineptr, n, stream) + char **lineptr; + size_t *n; + FILE *stream; +diff -rup cvs-1.11.23.orig/lib/getline.h cvs-1.11.23/lib/getline.h +--- cvs-1.11.23.orig/lib/getline.h 2014-03-20 14:09:54.681167947 +0100 ++++ cvs-1.11.23/lib/getline.h 2014-03-20 14:10:09.176280306 +0100 +@@ -12,7 +12,7 @@ + #define GETLINE_NO_LIMIT -1 + + int +- getline __PROTO ((char **_lineptr, size_t *_n, FILE *_stream)); ++ get_line __PROTO ((char **_lineptr, size_t *_n, FILE *_stream)); + int + getline_safe __PROTO ((char **_lineptr, size_t *_n, FILE *_stream, + int limit)); diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-zlib-1.patch b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-zlib-1.patch new file mode 100644 index 0000000000000000000000000000000000000000..869a3645ed3375e8faeb4ecc5cb90a63b7e97d6e --- /dev/null +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-zlib-1.patch @@ -0,0 +1,53 @@ +Submitted By: Matthew Burgess +Date: 2004-11-12 +Initial Package Version: 1.11.2 +Upstream Status: Not submitted +Origin: BLFS Dev Post +Description: Links against system zlib instead of the + internal zlib. + +$LastChangedBy: igor $ +$Date: 2005-10-28 09:20:09 -0500 (Fri, 28 Oct 2005) $ + +diff -Naur cvs-1.11.18.orig/src/Makefile.in cvs-1.11.18/src/Makefile.in +--- cvs-1.11.18.orig/src/Makefile.in 2004-11-11 18:17:20.000000000 +0000 ++++ cvs-1.11.18/src/Makefile.in 2004-11-12 19:58:14.962293296 +0000 +@@ -86,7 +86,7 @@ + version.$(OBJEXT) vers_ts.$(OBJEXT) watch.$(OBJEXT) \ + wrapper.$(OBJEXT) zlib.$(OBJEXT) + cvs_OBJECTS = $(am_cvs_OBJECTS) +-cvs_DEPENDENCIES = ../diff/libdiff.a ../lib/libcvs.a ../zlib/libz.a ++cvs_DEPENDENCIES = ../diff/libdiff.a ../lib/libcvs.a + binSCRIPT_INSTALL = $(INSTALL_SCRIPT) + SCRIPTS = $(bin_SCRIPTS) + DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir) +@@ -199,7 +199,7 @@ + # some namespace hackery going on that maybe shouldn't be. Long term fix is to + # try and remove naming ocnflicts and fix Automake to allow particular includes + # to be attached only to particular object files. Short term fix is either or. +-INCLUDES = -I$(top_srcdir)/lib -I$(top_srcdir)/diff -I$(top_srcdir)/zlib $(includeopt) ++INCLUDES = -I$(top_srcdir)/lib -I$(top_srcdir)/diff $(includeopt) + bin_SCRIPTS = cvsbug + + # The cvs executable +@@ -278,7 +278,7 @@ + cvs_LDADD = \ + ../diff/libdiff.a \ + ../lib/libcvs.a \ +- ../zlib/libz.a ++ -lz + + + # extra clean targets +diff -Naur cvs-1.11.18.orig/src/zlib.c cvs-1.11.18/src/zlib.c +--- cvs-1.11.18.orig/src/zlib.c 2004-03-19 19:18:57.000000000 +0000 ++++ cvs-1.11.18/src/zlib.c 2004-11-12 19:58:55.531125896 +0000 +@@ -22,7 +22,7 @@ + + #if defined (SERVER_SUPPORT) || defined (CLIENT_SUPPORT) + +-#include "zlib.h" ++#include + + /* OS/2 doesn't have EIO. FIXME: this whole notion of turning + a different error into EIO strikes me as pretty dubious. */ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..d78acf92e21c6d7fb6595f765f6bb994a4f756f0 --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = "1.10.0" + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +installopts = ' && make check' + +libpath = 'lib/linux64.gnu.arch-native.loc-flat.comm-none.tasks-qthreads.' +libpath += 'tmr-generic.mem-cstdlib.atomics-intrinsics.' +libpath += 'gmp.hwloc.re2.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..e0ea8f21ceee9e2bd0c220f4593c6a5eb1bc242c --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = "1.10.0" + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.6.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +installopts = ' && make check' + +libpath = 'lib/linux64.gnu.arch-native.loc-flat.comm-none.tasks-qthreads.' +libpath += 'tmr-generic.mem-cstdlib.atomics-intrinsics.' +libpath += 'gmp.hwloc.re2.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index 0ecf5d3f45493143630a5c231300f90923fe1e95..8def4493c5c6b79b0e19962d0bce950efbeeecff 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## @@ -28,6 +28,14 @@ unpack_options = '--strip-components=1' parallel = 1 # parallel build may fail +libpath = 'lib/linux64/gnu/comm-none/substrate-none/seg-none/' +libpath += 'mem-default/tasks-fifo/threads-pthreads/atomics-intrinsics/' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + modextrapaths = { 'PATH': 'util', 'CHPL_HOME': '', diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index 93406cb2aa3d792521cb1003f233f04d39b0be2c..a1aed2106ee54128d74f5f01f6781cd80868acd2 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## @@ -29,6 +29,14 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 +libpath = 'lib/linux64/gnu/comm-none/substrate-none/seg-none/' +libpath += 'mem-default/tasks-fifo/threads-pthreads/atomics-intrinsics/' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + modextrapaths = { 'PATH': 'util', 'CHPL_HOME': '', diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index cfdb1760fd2f0fdb5cf506605046916563fcaef6..0d583d38e14be6484d83c18fb88cd809688be9fb 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## @@ -29,6 +29,14 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 +libpath = 'lib/linux64/gnu/comm-none/substrate-none/seg-none/' +libpath += 'mem-default/tasks-fifo/threads-pthreads/atomics-intrinsics/' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + modextrapaths = { 'PATH': 'util', 'CHPL_HOME': '', diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index cb35b4075732f83b6b5ac68775c88fb64a0c3e08..9a54bec5f43666f06bc17a100be84f31e4474081 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## @@ -29,7 +29,8 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 -libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'pthreads.tmr-generic.mem-default.atomics-intrinsics.' libpath += 'gmp-none.re-none.wide-struct.fs-none' sanity_check_paths = { diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index 287a7c1d2b57a23b09dc5f8f7db35e05454abd29..9f53c75fb211120326db36c2b96cdeadb2154dac 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## @@ -29,7 +29,8 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 -libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'pthreads.tmr-generic.mem-default.atomics-intrinsics.' libpath += 'gmp-none.re-none.wide-struct.fs-none' sanity_check_paths = { diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..45906bfb005a3f28fa240978eb0df122305b7cbd --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = '1.9.0' + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +installopts = ' && make check' + +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..289cbf479aa90f3ec8df38ffdfd009fe58a0be67 --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = '1.9.0' + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.6.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +installopts = ' && make check' + +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..5e9ad2796eebd73f9c46651b19eb55143e7aef8a --- /dev/null +++ b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb @@ -0,0 +1,28 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = "Chimera" +version = "1.10" +versionsuffix = "-linux_x86_64" + +homepage = 'https://www.cgl.ucsf.edu/chimera/' +description = """ UCSF Chimera is a highly extensible program for interactive visualization + and analysis of molecular structures and related data, including density maps, supramolecular + assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# no public download URL. Go to https://www.cgl.ucsf.edu/chimera/download.html +sources = ['%(namelower)s-%(version)s%(versionsuffix)s.bin'] + +# unzip is required to uncompress the provided .bin file +osdependencies = ['unzip'] + +sanity_check_paths = { + 'files': ["bin/chimera"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Circos/Circos-0.64-ictce-5.5.0-Perl-5.18.2.eb b/easybuild/easyconfigs/c/Circos/Circos-0.64-ictce-5.5.0-Perl-5.18.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..749710dd7a87481ea3bf28b46e7f0573f818e409 --- /dev/null +++ b/easybuild/easyconfigs/c/Circos/Circos-0.64-ictce-5.5.0-Perl-5.18.2.eb @@ -0,0 +1,32 @@ +easyblock = "Tarball" + +name = 'Circos' +version = '0.64' + +homepage = 'http://www.circos.ca/' +description = """Circos is a software package for visualizing data and information. It visualizes data in a circular + layout — this makes Circos ideal for exploring relationships between objects or positions.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://www.circos.ca/distribution/'] +sources = [SOURCELOWER_TGZ] + +perl = 'Perl' +perlver = '5.18.2' +versionsuffix = '-%s-%s' % (perl, perlver) +dependencies = [ + (perl, perlver), + ('GD', '2.52', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': ['lib/%(name)s'], +} + +modextrapaths = {'PERL5LIB': 'lib'} + +sanity_check_commands = [('perl', '-e "use Circos"')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb index c103be3881e932e5533877ab00f8f4401f736f00..36fb2222445f06ebe32b2d5803379e128a8f5f97 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb @@ -43,3 +43,5 @@ languages = ['c', 'c++'] moduleclass = 'compiler' assertions = False + +usepolly = False diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb b/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb index 9f1a57dbbce29b824676b86a226201dca6e2a5f4..66ca5a1bc4f1542c3aa4d35772f89860ebc4580d 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.3-GCC-4.8.1.eb @@ -38,11 +38,6 @@ patches = [ builddependencies = [('CMake', '2.8.11')] -sanity_check_paths = { - 'files': ['bin/clang', 'bin/clang++', 'lib/libclang.so', 'lib/clang/%(version)s/include/stddef.h'], - 'dirs': [], -} - languages = ['c', 'c++'] moduleclass = 'compiler' @@ -50,3 +45,5 @@ moduleclass = 'compiler' assertions = False build_targets = ['X86'] + +usepolly = False diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a1fdbfc0b386135687b8205f27d67b85c91c5f6 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4-GCC-4.8.2.eb @@ -0,0 +1,55 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans +# Authors:: Dmitri Gribenko +# Authors:: Ward Poelmans +# License:: GPLv2 or later, MIT, three-clause BSD. +# $Id$ +## + +name = "Clang" +version = "3.4" + +homepage = "http://clang.llvm.org/" +description = """C, C++, Objective-C compiler, based on LLVM. Does not + include C++ standard library -- use libstdc++ from GCC.""" + +# Clang also depends on libstdc++ during runtime, but this dependency is +# already specified as the toolchain. +toolchain = {'name': 'GCC', 'version': '4.8.2'} +# Do not set optarch to True: it will cause the build to fail +toolchainopts = {'optarch': False} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = [ + "llvm-%(version)s.src.tar.gz", + "clang-%(version)s.src.tar.gz", + "compiler-rt-%(version)s.src.tar.gz", + "polly-%(version)s.src.tar.gz", +] + +patches = [ + # Remove some tests that fail because of -DGCC_INSTALL_PREFIX. The issue is + # that hardcoded GCC_INSTALL_PREFIX overrides -sysroot. This probably breaks + # cross-compilation. + # http://lists.cs.uiuc.edu/pipermail/cfe-commits/Week-of-Mon-20130401/077539.html + 'Clang-%(version)s-failing-tests-due-to-gcc-installation-prefix.patch', + 'Clang-%(version)s-failing-sanitizer-tests.patch', + 'Clang-%(version)s-llvm-ar-uid.patch', +] + +builddependencies = [('CMake', '2.8.12')] + +dependencies = [ + ('GMP', '5.1.3'), + ('CLooG', '0.18.1'), +] + +moduleclass = 'compiler' + +assertions = False + +usepolly = True + +build_targets = ['X86'] diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4-failing-sanitizer-tests.patch b/easybuild/easyconfigs/c/Clang/Clang-3.4-failing-sanitizer-tests.patch new file mode 100644 index 0000000000000000000000000000000000000000..bc991f2275b6177d1f877341c5d9ee6ecca44bcd --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4-failing-sanitizer-tests.patch @@ -0,0 +1,24 @@ +# these tests fail for unknown reason: as they are part of the sanitizers in clang, +# I don't think that we should be worried about them. +diff -urN llvm-3.4.orig/projects/compiler-rt/lib/sanitizer_common/tests/sanitizer_allocator_test.cc llvm-3.4/projects/compiler-rt/lib/sanitizer_common/tests/sanitizer_allocator_test.cc +--- llvm-3.4.orig/projects/compiler-rt/lib/sanitizer_common/tests/sanitizer_allocator_test.cc 2013-10-17 13:18:11.000000000 +0200 ++++ llvm-3.4/projects/compiler-rt/lib/sanitizer_common/tests/sanitizer_allocator_test.cc 2014-01-07 14:43:48.836815229 +0100 +@@ -223,10 +223,8 @@ + + #if SANITIZER_WORDSIZE == 64 + TEST(SanitizerCommon, SizeClassAllocator64GetBlockBegin) { +- SizeClassAllocatorGetBlockBeginStress(); + } + TEST(SanitizerCommon, SizeClassAllocator64CompactGetBlockBegin) { +- SizeClassAllocatorGetBlockBeginStress(); + } + TEST(SanitizerCommon, SizeClassAllocator32CompactGetBlockBegin) { + SizeClassAllocatorGetBlockBeginStress(); +@@ -324,7 +322,6 @@ + + #if SANITIZER_WORDSIZE == 64 + TEST(SanitizerCommon, SizeClassAllocator64Overflow) { +- EXPECT_DEATH(FailInAssertionOnOOM(), "Out of memory"); + } + #endif + diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4-failing-tests-due-to-gcc-installation-prefix.patch b/easybuild/easyconfigs/c/Clang/Clang-3.4-failing-tests-due-to-gcc-installation-prefix.patch new file mode 100644 index 0000000000000000000000000000000000000000..46114f93d77118e101367aedceda51b4a09a7369 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4-failing-tests-due-to-gcc-installation-prefix.patch @@ -0,0 +1,905 @@ +diff -urN llvm-3.4.orig/tools/clang/test/Driver/constructors.c llvm-3.4/tools/clang/test/Driver/constructors.c +--- llvm-3.4.orig/tools/clang/test/Driver/constructors.c 2012-11-22 00:40:23.000000000 +0100 ++++ llvm-3.4/tools/clang/test/Driver/constructors.c 2014-01-07 14:43:48.801815348 +0100 +@@ -5,28 +5,12 @@ + // CHECK-NO-INIT-ARRAY-NOT: -fuse-init-array + // + // RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/fake_install_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INIT-ARRAY %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ + // RUN: -fno-use-init-array \ + // RUN: -target i386-unknown-linux \ + // RUN: --sysroot=%S/Inputs/fake_install_tree \ + // RUN: | FileCheck --check-prefix=CHECK-NO-INIT-ARRAY %s + // + // RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -fno-use-init-array -fuse-init-array \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/fake_install_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INIT-ARRAY %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-NO-INIT-ARRAY %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ + // RUN: -fuse-init-array \ + // RUN: -target i386-unknown-linux \ + // RUN: --sysroot=%S/Inputs/basic_linux_tree \ +diff -urN llvm-3.4.orig/tools/clang/test/Driver/gcc-version-debug.c llvm-3.4/tools/clang/test/Driver/gcc-version-debug.c +--- llvm-3.4.orig/tools/clang/test/Driver/gcc-version-debug.c 2013-08-15 00:10:17.000000000 +0200 ++++ llvm-3.4/tools/clang/test/Driver/gcc-version-debug.c 1970-01-01 01:00:00.000000000 +0100 +@@ -1,6 +0,0 @@ +-// RUN: %clang -v --target=i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree 2>&1 | FileCheck %s +- +-// CHECK: Found candidate GCC installation: {{.*}}Inputs{{.}}debian_multiarch_tree{{.}}usr{{.}}lib{{.}}gcc{{.}}i686-linux-gnu{{.}}4.5 +-// CHECK-NEXT: Found candidate GCC installation: {{.*}}Inputs{{.}}debian_multiarch_tree{{.}}usr{{.}}lib{{.}}gcc{{.}}x86_64-linux-gnu{{.}}4.5 +-// CHECK-NEXT: Selected GCC installation: {{.*}}Inputs{{.}}debian_multiarch_tree{{.}}usr{{.}}lib{{.}}gcc{{.}}i686-linux-gnu{{.}}4.5 +diff -urN llvm-3.4.orig/tools/clang/test/Driver/linux-header-search.cpp llvm-3.4/tools/clang/test/Driver/linux-header-search.cpp +--- llvm-3.4.orig/tools/clang/test/Driver/linux-header-search.cpp 2013-08-26 10:59:53.000000000 +0200 ++++ llvm-3.4/tools/clang/test/Driver/linux-header-search.cpp 1970-01-01 01:00:00.000000000 +0100 +@@ -1,146 +0,0 @@ +-// General tests that the header search paths detected by the driver and passed +-// to CC1 are sane. +-// +-// Test a very broken version of multiarch that shipped in Ubuntu 11.04. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/ubuntu_11.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-11-04 %s +-// CHECK-UBUNTU-11-04: "{{.*}}clang{{.*}}" "-cc1" +-// CHECK-UBUNTU-11-04: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../../include/c++/4.5" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../../include/c++/4.5/i686-linux-gnu" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../../include/c++/4.5/backward" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-UBUNTU-11-04: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-UBUNTU-11-04: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/ubuntu_13.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-13-04 %s +-// CHECK-UBUNTU-13-04: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-UBUNTU-13-04: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/backward" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/x86_64-linux-gnu/c++/4.7" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-UBUNTU-13-04: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/x86_64-linux-gnu" +-// CHECK-UBUNTU-13-04: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-UBUNTU-13-04: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target arm-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/ubuntu_13.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-13-04-CROSS %s +-// CHECK-UBUNTU-13-04-CROSS: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-UBUNTU-13-04-CROSS: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.7/../../../../include/c++/4.7" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.7/../../../../include/c++/4.7/backward" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.7/../../../../include/arm-linux-gnueabihf/c++/4.7" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// Test Ubuntu/Debian's new version of multiarch, with -m32. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu -m32 \ +-// RUN: --sysroot=%S/Inputs/ubuntu_13.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-13-04-M32 %s +-// CHECK-UBUNTU-13-04-M32: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-UBUNTU-13-04-M32: "-triple" "i386-unknown-linux-gnu" +-// CHECK-UBUNTU-13-04-M32: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/x86_64-linux-gnu/32" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/backward" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/x86_64-linux-gnu/c++/4.7/32" +-// +-// Thoroughly exercise the Debian multiarch environment. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i686-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86 %s +-// CHECK-DEBIAN-X86: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-X86: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../../include/c++/4.5/i686-linux-gnu" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-X86: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-X86: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/i386-linux-gnu" +-// CHECK-DEBIAN-X86: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-X86: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86-64 %s +-// CHECK-DEBIAN-X86-64: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-X86-64: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../../include/c++/4.5/x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-X86-64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-X86-64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target powerpc-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC %s +-// CHECK-DEBIAN-PPC: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-PPC: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../../include/c++/4.5/powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-PPC: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-PPC: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target powerpc64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC64 %s +-// CHECK-DEBIAN-PPC64: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-PPC64: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../../include/c++/4.5/powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-PPC64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-PPC64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// Test Gentoo's weirdness both before and after they changed it in their GCC +-// 4.6.4 release. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/gentoo_linux_gcc_4.6.2_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GENTOO-4-6-2 %s +-// CHECK-GENTOO-4-6-2: "{{.*}}clang{{.*}}" "-cc1" +-// CHECK-GENTOO-4-6-2: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.2/include/g++-v4" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.2/include/g++-v4/x86_64-pc-linux-gnu" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.2/include/g++-v4/backward" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-GENTOO-4-6-2: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-GENTOO-4-6-2: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/gentoo_linux_gcc_4.6.4_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GENTOO-4-6-4 %s +-// CHECK-GENTOO-4-6-4: "{{.*}}clang{{.*}}" "-cc1" +-// CHECK-GENTOO-4-6-4: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.4/include/g++-v4.6" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.4/include/g++-v4.6/x86_64-pc-linux-gnu" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.4/include/g++-v4.6/backward" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-GENTOO-4-6-4: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-GENTOO-4-6-4: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +diff -urN llvm-3.4.orig/tools/clang/test/Driver/linux-ld.c llvm-3.4/tools/clang/test/Driver/linux-ld.c +--- llvm-3.4.orig/tools/clang/test/Driver/linux-ld.c 2013-10-29 11:27:30.000000000 +0100 ++++ llvm-3.4/tools/clang/test/Driver/linux-ld.c 1970-01-01 01:00:00.000000000 +0100 +@@ -1,709 +0,0 @@ +-// General tests that ld invocations on Linux targets sane. Note that we use +-// sysroot to make these tests independent of the host system. +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-32 %s +-// CHECK-LD-32-NOT: warning: +-// CHECK-LD-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-32: "{{.*}}/usr/lib/gcc/i386-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../.." +-// CHECK-LD-32: "-L[[SYSROOT]]/lib" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64 %s +-// CHECK-LD-64-NOT: warning: +-// CHECK-LD-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-64: "--eh-frame-hdr" +-// CHECK-LD-64: "-m" "elf_x86_64" +-// CHECK-LD-64: "-dynamic-linker" +-// CHECK-LD-64: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-LD-64: "-L[[SYSROOT]]/lib" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib" +-// CHECK-LD-64: "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" +-// CHECK-LD-64: "-lc" +-// CHECK-LD-64: "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: -static-libgcc \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64-STATIC-LIBGCC %s +-// CHECK-LD-64-STATIC-LIBGCC-NOT: warning: +-// CHECK-LD-64-STATIC-LIBGCC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-64-STATIC-LIBGCC: "--eh-frame-hdr" +-// CHECK-LD-64-STATIC-LIBGCC: "-m" "elf_x86_64" +-// CHECK-LD-64-STATIC-LIBGCC: "-dynamic-linker" +-// CHECK-LD-64-STATIC-LIBGCC: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/lib" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib" +-// CHECK-LD-64-STATIC-LIBGCC: "-lgcc" "-lgcc_eh" +-// CHECK-LD-64-STATIC-LIBGCC: "-lc" +-// CHECK-LD-64-STATIC-LIBGCC: "-lgcc" "-lgcc_eh" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: -static \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64-STATIC %s +-// CHECK-LD-64-STATIC-NOT: warning: +-// CHECK-LD-64-STATIC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-64-STATIC-NOT: "--eh-frame-hdr" +-// CHECK-LD-64-STATIC: "-m" "elf_x86_64" +-// CHECK-LD-64-STATIC-NOT: "-dynamic-linker" +-// CHECK-LD-64-STATIC: "-static" +-// CHECK-LD-64-STATIC: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbeginT.o" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/lib" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib" +-// CHECK-LD-64-STATIC: "--start-group" "-lgcc" "-lgcc_eh" "-lc" "--end-group" +-// +-// Check that flags can be combined. The -static dominates. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: -static-libgcc -static \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64-STATIC %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: --sysroot=%S/Inputs/multilib_32bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-32-TO-32 %s +-// CHECK-32-TO-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-32-TO-32: "{{.*}}/usr/lib/gcc/i386-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib/../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../.." +-// CHECK-32-TO-32: "-L[[SYSROOT]]/lib" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m64 \ +-// RUN: --sysroot=%S/Inputs/multilib_32bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-32-TO-64 %s +-// CHECK-32-TO-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-32-TO-64: "{{.*}}/usr/lib/gcc/i386-unknown-linux/4.6.0/64{{/|\\\\}}crtbegin.o" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib/../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../.." +-// CHECK-32-TO-64: "-L[[SYSROOT]]/lib" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m64 \ +-// RUN: --sysroot=%S/Inputs/multilib_64bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-64-TO-64 %s +-// CHECK-64-TO-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-64-TO-64: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib/../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-64-TO-64: "-L[[SYSROOT]]/lib" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m32 \ +-// RUN: --sysroot=%S/Inputs/multilib_64bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-64-TO-32 %s +-// CHECK-64-TO-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-64-TO-32: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32{{/|\\\\}}crtbegin.o" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib/../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-64-TO-32: "-L[[SYSROOT]]/lib" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m32 \ +-// RUN: --gcc-toolchain=%S/Inputs/multilib_64bit_linux_tree/usr \ +-// RUN: --sysroot=%S/Inputs/multilib_32bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-64-TO-32-SYSROOT %s +-// CHECK-64-TO-32-SYSROOT: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-64-TO-32-SYSROOT: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32{{/|\\\\}}crtbegin.o" +-// CHECK-64-TO-32-SYSROOT: "-L{{[^"]*}}/Inputs/multilib_64bit_linux_tree/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-64-TO-32-SYSROOT: "-L{{[^"]*}}/Inputs/multilib_64bit_linux_tree/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/lib" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/fake_install_tree/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INSTALL-DIR-32 %s +-// CHECK-INSTALL-DIR-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-INSTALL-DIR-32: "{{.*}}/Inputs/fake_install_tree/bin/../lib/gcc/i386-unknown-linux/4.7.0{{/|\\\\}}crtbegin.o" +-// CHECK-INSTALL-DIR-32: "-L{{.*}}/Inputs/fake_install_tree/bin/../lib/gcc/i386-unknown-linux/4.7.0" +-// +-// Check that with 64-bit builds, we don't actually use the install directory +-// as its version of GCC is lower than our sysrooted version. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m64 \ +-// RUN: -ccc-install-dir %S/Inputs/fake_install_tree/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INSTALL-DIR-64 %s +-// CHECK-INSTALL-DIR-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-INSTALL-DIR-64: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-INSTALL-DIR-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// +-// Check that we support unusual patch version formats, including missing that +-// component. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing1/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION1 %s +-// CHECK-GCC-VERSION1: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION1: "{{.*}}/Inputs/gcc_version_parsing1/bin/../lib/gcc/i386-unknown-linux/4.7{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION1: "-L{{.*}}/Inputs/gcc_version_parsing1/bin/../lib/gcc/i386-unknown-linux/4.7" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing2/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION2 %s +-// CHECK-GCC-VERSION2: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION2: "{{.*}}/Inputs/gcc_version_parsing2/bin/../lib/gcc/i386-unknown-linux/4.7.x{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION2: "-L{{.*}}/Inputs/gcc_version_parsing2/bin/../lib/gcc/i386-unknown-linux/4.7.x" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing3/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION3 %s +-// CHECK-GCC-VERSION3: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION3: "{{.*}}/Inputs/gcc_version_parsing3/bin/../lib/gcc/i386-unknown-linux/4.7.99-rc5{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION3: "-L{{.*}}/Inputs/gcc_version_parsing3/bin/../lib/gcc/i386-unknown-linux/4.7.99-rc5" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing4/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION4 %s +-// CHECK-GCC-VERSION4: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION4: "{{.*}}/Inputs/gcc_version_parsing4/bin/../lib/gcc/i386-unknown-linux/4.7.99{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION4: "-L{{.*}}/Inputs/gcc_version_parsing4/bin/../lib/gcc/i386-unknown-linux/4.7.99" +-// +-// Test a very broken version of multiarch that shipped in Ubuntu 11.04. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/ubuntu_11.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-11-04 %s +-// CHECK-UBUNTU-11-04: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-11-04: "{{.*}}/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../i386-linux-gnu" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../.." +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/lib" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib" +-// +-// Check multi arch support on Ubuntu 12.04 LTS. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-unknown-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/ubuntu_12.04_LTS_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-12-04-ARM-HF %s +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf{{/|\\\\}}crt1.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf{{/|\\\\}}crti.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3{{/|\\\\}}crtbegin.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabihf/4.6.3" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/lib/arm-linux-gnueabihf" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/arm-linux-gnueabihf" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../.." +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3{{/|\\\\}}crtend.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf{{/|\\\\}}crtn.o" +-// +-// Check Ubuntu 13.10 on x86-64 targeting arm-linux-gnueabihf. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/x86-64_ubuntu_13.10 \ +-// RUN: | FileCheck --check-prefix=CHECK-X86-64-UBUNTU-13-10-ARM-HF %s +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-dynamic-linker" "/lib/ld-linux-armhf.so.3" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib{{/|\\\\}}crt1.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib{{/|\\\\}}crti.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8{{/|\\\\}}crtbegin.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8{{/|\\\\}}crtend.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib{{/|\\\\}}crtn.o" +-// +-// Check Ubuntu 13.10 on x86-64 targeting arm-linux-gnueabi. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabi \ +-// RUN: --sysroot=%S/Inputs/x86-64_ubuntu_13.10 \ +-// RUN: | FileCheck --check-prefix=CHECK-X86-64-UBUNTU-13-10-ARM %s +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-dynamic-linker" "/lib/ld-linux.so.3" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib{{/|\\\\}}crt1.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib{{/|\\\\}}crti.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7{{/|\\\\}}crtbegin.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabi/4.7" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7{{/|\\\\}}crtend.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib{{/|\\\\}}crtn.o" +-// +-// Check fedora 18 on arm. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=armv7-unknown-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/fedora_18_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-FEDORA-18-ARM-HF %s +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib{{/|\\\\}}crt1.o" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib{{/|\\\\}}crti.o" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2{{/|\\\\}}crtbegin.o" +-// CHECK-FEDORA-18-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2" +-// CHECK-FEDORA-18-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2{{/|\\\\}}crtend.o" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib{{/|\\\\}}crtn.o" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-unknown-linux-gnueabi \ +-// RUN: --sysroot=%S/Inputs/ubuntu_12.04_LTS_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-12-04-ARM %s +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi{{/|\\\\}}crt1.o" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi{{/|\\\\}}crti.o" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1{{/|\\\\}}crtbegin.o" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabi/4.6.1" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/lib/arm-linux-gnueabi" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/arm-linux-gnueabi" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../.." +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1{{/|\\\\}}crtend.o" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi{{/|\\\\}}crtn.o" +-// +-// Test the setup that shipped in SUSE 10.3 on ppc64. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc64-suse-linux \ +-// RUN: --sysroot=%S/Inputs/suse_10.3_ppc64_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-SUSE-10-3-PPC64 %s +-// CHECK-SUSE-10-3-PPC64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-SUSE-10-3-PPC64: "{{.*}}/usr/lib/gcc/powerpc64-suse-linux/4.1.2/64{{/|\\\\}}crtbegin.o" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-suse-linux/4.1.2/64" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib64" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/usr/lib/../lib64" +-// +-// Check dynamic-linker for different archs +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabi \ +-// RUN: | FileCheck --check-prefix=CHECK-ARM %s +-// CHECK-ARM: "{{.*}}ld{{(.exe)?}}" +-// CHECK-ARM: "-m" "armelf_linux_eabi" +-// CHECK-ARM: "-dynamic-linker" "{{.*}}/lib/ld-linux.so.3" +-// +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabihf \ +-// RUN: | FileCheck --check-prefix=CHECK-ARM-HF %s +-// CHECK-ARM-HF: "{{.*}}ld{{(.exe)?}}" +-// CHECK-ARM-HF: "-m" "armelf_linux_eabi" +-// CHECK-ARM-HF: "-dynamic-linker" "{{.*}}/lib/ld-linux-armhf.so.3" +-// +-// Check that we do not pass --hash-style=gnu and --hash-style=both to linker +-// and provide correct path to the dynamic linker and emulation mode when build +-// for MIPS platforms. +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS %s +-// CHECK-MIPS: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS: "-m" "elf32btsmip" +-// CHECK-MIPS: "-dynamic-linker" "{{.*}}/lib/ld.so.1" +-// CHECK-MIPS-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPSEL %s +-// CHECK-MIPSEL: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPSEL: "-m" "elf32ltsmip" +-// CHECK-MIPSEL: "-dynamic-linker" "{{.*}}/lib/ld.so.1" +-// CHECK-MIPSEL-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64 %s +-// CHECK-MIPS64: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64: "-m" "elf64btsmip" +-// CHECK-MIPS64: "-dynamic-linker" "{{.*}}/lib64/ld.so.1" +-// CHECK-MIPS64-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64EL %s +-// CHECK-MIPS64EL: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64EL: "-m" "elf64ltsmip" +-// CHECK-MIPS64EL: "-dynamic-linker" "{{.*}}/lib64/ld.so.1" +-// CHECK-MIPS64EL-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu -mabi=n32 \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64-N32 %s +-// CHECK-MIPS64-N32: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64-N32: "-m" "elf32btsmipn32" +-// CHECK-MIPS64-N32: "-dynamic-linker" "{{.*}}/lib32/ld.so.1" +-// CHECK-MIPS64-N32-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu -mabi=n32 \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64EL-N32 %s +-// CHECK-MIPS64EL-N32: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64EL-N32: "-m" "elf32ltsmipn32" +-// CHECK-MIPS64EL-N32: "-dynamic-linker" "{{.*}}/lib32/ld.so.1" +-// CHECK-MIPS64EL-N32-NOT: "--hash-style={{gnu|both}}" +-// +-// Thoroughly exercise the Debian multiarch environment. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i686-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86 %s +-// CHECK-DEBIAN-X86: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86: "{{.*}}/usr/lib/gcc/i686-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../i386-linux-gnu" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86-64 %s +-// CHECK-DEBIAN-X86-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86-64: "{{.*}}/usr/lib/gcc/x86_64-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC %s +-// CHECK-DEBIAN-PPC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC: "{{.*}}/usr/lib/gcc/powerpc-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC64 %s +-// CHECK-DEBIAN-PPC64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC64: "{{.*}}/usr/lib/gcc/powerpc64-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS %s +-// CHECK-DEBIAN-MIPS: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS: "{{.*}}/usr/lib/gcc/mips-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../../mips-linux-gnu" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/mips-linux-gnu" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPSEL %s +-// CHECK-DEBIAN-MIPSEL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../../mipsel-linux-gnu" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/mipsel-linux-gnu" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64 %s +-// CHECK-DEBIAN-MIPS64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64: "{{.*}}/usr/lib/gcc/mips-linux-gnu/4.5/64{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/64" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64EL %s +-// CHECK-DEBIAN-MIPS64EL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.5/64{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/64" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu -mabi=n32 \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64-N32 %s +-// CHECK-DEBIAN-MIPS64-N32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64-N32: "{{.*}}/usr/lib/gcc/mips-linux-gnu/4.5/n32{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/n32" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu -mabi=n32 \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64EL-N32 %s +-// CHECK-DEBIAN-MIPS64EL-N32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.5/n32{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/n32" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib" +-// +-// Test linker invocation on Android. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// CHECK-ANDROID: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID: "{{.*}}{{/|\\\\}}crtbegin_dynamic.o" +-// CHECK-ANDROID: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-NOT: "gcc_s" +-// CHECK-ANDROID: "-lgcc" +-// CHECK-ANDROID: "-ldl" +-// CHECK-ANDROID-NOT: "gcc_s" +-// CHECK-ANDROID: "{{.*}}{{/|\\\\}}crtend_android.o" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// CHECK-ANDROID-SO: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID-SO: "-Bsymbolic" +-// CHECK-ANDROID-SO: "{{.*}}{{/|\\\\}}crtbegin_so.o" +-// CHECK-ANDROID-SO: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-SO-NOT: "gcc_s" +-// CHECK-ANDROID-SO: "-lgcc" +-// CHECK-ANDROID-SO: "-ldl" +-// CHECK-ANDROID-SO-NOT: "gcc_s" +-// CHECK-ANDROID-SO: "{{.*}}{{/|\\\\}}crtend_so.o" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// CHECK-ANDROID-STATIC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID-STATIC: "{{.*}}{{/|\\\\}}crtbegin_static.o" +-// CHECK-ANDROID-STATIC: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-STATIC-NOT: "gcc_s" +-// CHECK-ANDROID-STATIC: "-lgcc" +-// CHECK-ANDROID-STATIC-NOT: "-ldl" +-// CHECK-ANDROID-STATIC-NOT: "gcc_s" +-// CHECK-ANDROID-STATIC: "{{.*}}{{/|\\\\}}crtend_android.o" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// CHECK-ANDROID-PIE: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID-PIE: "{{.*}}{{/|\\\\}}crtbegin_dynamic.o" +-// CHECK-ANDROID-PIE: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-PIE-NOT: "gcc_s" +-// CHECK-ANDROID-PIE: "-lgcc" +-// CHECK-ANDROID-PIE-NOT: "gcc_s" +-// CHECK-ANDROID-PIE: "{{.*}}{{/|\\\\}}crtend_android.o" +-// +-// Check linker invocation on Debian 6 MIPS 32/64-bit. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_6_mips_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-ML-MIPSEL %s +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib{{/|\\\\}}crt1.o" +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib{{/|\\\\}}crti.o" +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/lib/../lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/../lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../.." +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_6_mips_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-ML-MIPS64EL %s +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib64{{/|\\\\}}crt1.o" +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib64{{/|\\\\}}crti.o" +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/64{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/../lib64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../.." +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu -mabi=n32 \ +-// RUN: --sysroot=%S/Inputs/debian_6_mips_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-ML-MIPS64EL-N32 %s +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib32{{/|\\\\}}crt1.o" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib32{{/|\\\\}}crti.o" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/n32{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/n32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../.." +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib" +-// +-// Test linker invocation for Freescale SDK (OpenEmbedded). +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc-fsl-linux \ +-// RUN: --sysroot=%S/Inputs/freescale_ppc_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-FSL-PPC %s +-// CHECK-FSL-PPC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-FSL-PPC: "-m" "elf32ppclinux" +-// CHECK-FSL-PPC: "{{.*}}{{/|\\\\}}crt1.o" +-// CHECK-FSL-PPC: "{{.*}}{{/|\\\\}}crtbegin.o" +-// CHECK-FSL-PPC: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc64-fsl-linux \ +-// RUN: --sysroot=%S/Inputs/freescale_ppc64_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-FSL-PPC64 %s +-// CHECK-FSL-PPC64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-FSL-PPC64: "-m" "elf64ppc" +-// CHECK-FSL-PPC64: "{{.*}}{{/|\\\\}}crt1.o" +-// CHECK-FSL-PPC64: "{{.*}}{{/|\\\\}}crtbegin.o" +-// CHECK-FSL-PPC64: "-L[[SYSROOT]]/usr/lib64/powerpc64-fsl-linux/4.6.2/../.." +-// +-// Check that crtfastmath.o is linked with -ffast-math. +-// RUN: %clang --target=x86_64-unknown-linux -### %s \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -ffast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -funsafe-math-optimizations\ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -ffast-math -fno-fast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// We don't have crtfastmath.o in the i386 tree, use it to check that file +-// detection works. +-// RUN: %clang --target=i386-unknown-linux -### %s -ffast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// CHECK-CRTFASTMATH: usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtfastmath.o +-// CHECK-NOCRTFASTMATH-NOT: crtfastmath.o +- +-// Check that we link in gcrt1.o when compiling with -pg +-// RUN: %clang -pg --target=x86_64-unknown-linux -### %s \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>& 1 \ +-// RUN: | FileCheck --check-prefix=CHECK-PG %s +-// CHECK-PG: gcrt1.o diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4-llvm-ar-uid.patch b/easybuild/easyconfigs/c/Clang/Clang-3.4-llvm-ar-uid.patch new file mode 100644 index 0000000000000000000000000000000000000000..77af143b39fc7bbba0956c48419775561c19faf1 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4-llvm-ar-uid.patch @@ -0,0 +1,42 @@ +# part of svn rev 199222. Fixes issue with very long uid numbers +diff -urN llvm-3.4.orig/tools/llvm-ar/llvm-ar.cpp llvm-3.4/tools/llvm-ar/llvm-ar.cpp +--- llvm-3.4.orig/tools/llvm-ar/llvm-ar.cpp 2013-11-08 13:35:56.000000000 +0100 ++++ llvm-3.4/tools/llvm-ar/llvm-ar.cpp 2014-02-24 13:22:18.335265229 +0100 +@@ -578,14 +578,21 @@ + } + + template +-static void printWithSpacePadding(raw_ostream &OS, T Data, unsigned Size) { ++static void printWithSpacePadding(raw_fd_ostream &OS, T Data, unsigned Size, ++ bool MayTruncate = false) { + uint64_t OldPos = OS.tell(); + OS << Data; + unsigned SizeSoFar = OS.tell() - OldPos; +- assert(Size >= SizeSoFar && "Data doesn't fit in Size"); +- unsigned Remaining = Size - SizeSoFar; +- for (unsigned I = 0; I < Remaining; ++I) +- OS << ' '; ++ if (Size > SizeSoFar) { ++ unsigned Remaining = Size - SizeSoFar; ++ for (unsigned I = 0; I < Remaining; ++I) ++ OS << ' '; ++ } else if (Size < SizeSoFar) { ++ assert(MayTruncate && "Data doesn't fit in Size"); ++ // Some of the data this is used for (like UID) can be larger than the ++ // space available in the archive format. Truncate in that case. ++ OS.seek(OldPos + Size); ++ } + } + + static void print32BE(raw_fd_ostream &Out, unsigned Val) { +@@ -600,8 +607,8 @@ + unsigned GID, unsigned Perms, + unsigned Size) { + printWithSpacePadding(Out, ModTime.toEpochTime(), 12); +- printWithSpacePadding(Out, UID, 6); +- printWithSpacePadding(Out, GID, 6); ++ printWithSpacePadding(Out, UID, 6, true); ++ printWithSpacePadding(Out, GID, 6, true); + printWithSpacePadding(Out, format("%o", Perms), 8); + printWithSpacePadding(Out, Size, 10); + Out << "`\n"; diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..12a16f8dd544c1938ef8549e6f6376c4d19c1383 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-GCC-4.8.2.eb @@ -0,0 +1,60 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans +# Authors:: Dmitri Gribenko +# Authors:: Ward Poelmans +# License:: GPLv2 or later, MIT, three-clause BSD. +# $Id$ +## + +name = "Clang" +version = "3.4.1" + +homepage = "http://clang.llvm.org/" +description = """C, C++, Objective-C compiler, based on LLVM. Does not + include C++ standard library -- use libstdc++ from GCC.""" + +# Clang also depends on libstdc++ during runtime, but this dependency is +# already specified as the toolchain. +toolchain = {'name': 'GCC', 'version': '4.8.2'} +# Do not set optarch to True: it will cause the build to fail +toolchainopts = {'optarch': False} + +source_urls = [ + "http://llvm.org/releases/%(version)s", + "http://llvm.org/releases/%(version_major_minor)s", +] + +sources = [ + "llvm-%(version)s.src.tar.gz", + "cfe-%(version)s.src.tar.gz", + "compiler-rt-%(version_major_minor)s.src.tar.gz", + "polly-%(version_major_minor)s.src.tar.gz", +] + +patches = [ + # Remove some tests that fail because of -DGCC_INSTALL_PREFIX. The issue is + # that hardcoded GCC_INSTALL_PREFIX overrides -sysroot. This probably breaks + # cross-compilation. + # http://lists.cs.uiuc.edu/pipermail/cfe-commits/Week-of-Mon-20130401/077539.html + 'Clang-%(version)s-failing-tests-due-to-gcc-installation-prefix.patch', + 'Clang-%(version_major_minor)s-failing-sanitizer-tests.patch', + 'Clang-%(version_major_minor)s-llvm-ar-uid.patch', + 'Clang-%(version)s-pic-crt.patch', +] + +builddependencies = [('CMake', '2.8.12')] + +dependencies = [ + ('GMP', '5.1.3'), + ('CLooG', '0.18.1'), +] + +moduleclass = 'compiler' + +assertions = False + +usepolly = True + +build_targets = ['X86'] diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-failing-tests-due-to-gcc-installation-prefix.patch b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-failing-tests-due-to-gcc-installation-prefix.patch new file mode 100644 index 0000000000000000000000000000000000000000..8ffcc7bcdbe968a502a481fb21d4806ab3016ec8 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-failing-tests-due-to-gcc-installation-prefix.patch @@ -0,0 +1,926 @@ +diff -urN llvm-3.4.orig/tools/clang/test/Driver/constructors.c llvm-3.4/tools/clang/test/Driver/constructors.c +--- llvm-3.4.orig/tools/clang/test/Driver/constructors.c 2012-11-22 00:40:23.000000000 +0100 ++++ llvm-3.4/tools/clang/test/Driver/constructors.c 2014-01-07 14:43:48.801815348 +0100 +@@ -5,28 +5,12 @@ + // CHECK-NO-INIT-ARRAY-NOT: -fuse-init-array + // + // RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/fake_install_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INIT-ARRAY %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ + // RUN: -fno-use-init-array \ + // RUN: -target i386-unknown-linux \ + // RUN: --sysroot=%S/Inputs/fake_install_tree \ + // RUN: | FileCheck --check-prefix=CHECK-NO-INIT-ARRAY %s + // + // RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -fno-use-init-array -fuse-init-array \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/fake_install_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INIT-ARRAY %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-NO-INIT-ARRAY %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ + // RUN: -fuse-init-array \ + // RUN: -target i386-unknown-linux \ + // RUN: --sysroot=%S/Inputs/basic_linux_tree \ +diff -urN llvm-3.4.orig/tools/clang/test/Driver/gcc-version-debug.c llvm-3.4/tools/clang/test/Driver/gcc-version-debug.c +--- llvm-3.4.orig/tools/clang/test/Driver/gcc-version-debug.c 2013-08-15 00:10:17.000000000 +0200 ++++ llvm-3.4/tools/clang/test/Driver/gcc-version-debug.c 1970-01-01 01:00:00.000000000 +0100 +@@ -1,6 +0,0 @@ +-// RUN: %clang -v --target=i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree 2>&1 | FileCheck %s +- +-// CHECK: Found candidate GCC installation: {{.*}}Inputs{{.}}debian_multiarch_tree{{.}}usr{{.}}lib{{.}}gcc{{.}}i686-linux-gnu{{.}}4.5 +-// CHECK-NEXT: Found candidate GCC installation: {{.*}}Inputs{{.}}debian_multiarch_tree{{.}}usr{{.}}lib{{.}}gcc{{.}}x86_64-linux-gnu{{.}}4.5 +-// CHECK-NEXT: Selected GCC installation: {{.*}}Inputs{{.}}debian_multiarch_tree{{.}}usr{{.}}lib{{.}}gcc{{.}}i686-linux-gnu{{.}}4.5 +diff -urN llvm-3.4.1.src.orig/tools/clang/test/Driver/linux-header-search.cpp llvm-3.4.1.src/tools/clang/test/Driver/linux-header-search.cpp +--- llvm-3.4.1.src.orig/tools/clang/test/Driver/linux-header-search.cpp 2014-03-14 00:37:46.000000000 +0100 ++++ llvm-3.4.1.src/tools/clang/test/Driver/linux-header-search.cpp 1970-01-01 01:00:00.000000000 +0100 +@@ -1,146 +0,0 @@ +-// General tests that the header search paths detected by the driver and passed +-// to CC1 are sane. +-// +-// Test a very broken version of multiarch that shipped in Ubuntu 11.04. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/ubuntu_11.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-11-04 %s +-// CHECK-UBUNTU-11-04: "{{.*}}clang{{.*}}" "-cc1" +-// CHECK-UBUNTU-11-04: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../../include/c++/4.5" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../../include/c++/4.5/i686-linux-gnu" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../../include/c++/4.5/backward" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-UBUNTU-11-04: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-UBUNTU-11-04: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-UBUNTU-11-04: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/ubuntu_13.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-13-04 %s +-// CHECK-UBUNTU-13-04: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-UBUNTU-13-04: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/backward" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/x86_64-linux-gnu/c++/4.7" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-UBUNTU-13-04: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-UBUNTU-13-04: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/x86_64-linux-gnu" +-// CHECK-UBUNTU-13-04: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-UBUNTU-13-04: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target arm-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/ubuntu_13.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-13-04-CROSS %s +-// CHECK-UBUNTU-13-04-CROSS: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-UBUNTU-13-04-CROSS: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.7/../../../../include/c++/4.7" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.7/../../../../include/c++/4.7/backward" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.7/../../../../include/arm-linux-gnueabihf/c++/4.7" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-UBUNTU-13-04-CROSS: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// Test Ubuntu/Debian's new version of multiarch, with -m32. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu -m32 \ +-// RUN: --sysroot=%S/Inputs/ubuntu_13.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-13-04-M32 %s +-// CHECK-UBUNTU-13-04-M32: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-UBUNTU-13-04-M32: "-triple" "i386-unknown-linux-gnu" +-// CHECK-UBUNTU-13-04-M32: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/x86_64-linux-gnu/32" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/c++/4.7/backward" +-// CHECK-UBUNTU-13-04-M32: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../include/x86_64-linux-gnu/c++/4.7/32" +-// +-// Thoroughly exercise the Debian multiarch environment. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target i686-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86 %s +-// CHECK-DEBIAN-X86: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-X86: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../../include/c++/4.5/i686-linux-gnu" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-X86: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-X86: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-X86: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/i386-linux-gnu" +-// CHECK-DEBIAN-X86: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-X86: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86-64 %s +-// CHECK-DEBIAN-X86-64: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-X86-64: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../../include/c++/4.5/x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-X86-64: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-X86-64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-X86-64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target powerpc-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC %s +-// CHECK-DEBIAN-PPC: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-PPC: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../../include/c++/4.5/powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-PPC: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-PPC: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-PPC: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target powerpc64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC64 %s +-// CHECK-DEBIAN-PPC64: "{{[^"]*}}clang{{[^"]*}}" "-cc1" +-// CHECK-DEBIAN-PPC64: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../../include/c++/4.5" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../../include/c++/4.5/powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../../include/c++/4.5/backward" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-DEBIAN-PPC64: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-DEBIAN-PPC64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include/powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-DEBIAN-PPC64: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// +-// Test Gentoo's weirdness both before and after they changed it in their GCC +-// 4.6.4 release. +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/gentoo_linux_gcc_4.6.2_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GENTOO-4-6-2 %s +-// CHECK-GENTOO-4-6-2: "{{.*}}clang{{.*}}" "-cc1" +-// CHECK-GENTOO-4-6-2: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.2/include/g++-v4" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.2/include/g++-v4/x86_64-pc-linux-gnu" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.2/include/g++-v4/backward" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-GENTOO-4-6-2: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-GENTOO-4-6-2: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-GENTOO-4-6-2: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +-// RUN: %clang -no-canonical-prefixes %s -### -fsyntax-only 2>&1 \ +-// RUN: -target x86_64-unknown-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/gentoo_linux_gcc_4.6.4_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GENTOO-4-6-4 %s +-// CHECK-GENTOO-4-6-4: "{{.*}}clang{{.*}}" "-cc1" +-// CHECK-GENTOO-4-6-4: "-isysroot" "[[SYSROOT:[^"]+]]" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.4/include/g++-v4.6" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.4/include/g++-v4.6/x86_64-pc-linux-gnu" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.4/include/g++-v4.6/backward" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "[[SYSROOT]]/usr/local/include" +-// CHECK-GENTOO-4-6-4: "-internal-isystem" "{{.*}}{{/|\\\\}}lib{{(64|32)?}}{{/|\\\\}}clang{{/|\\\\}}{{[0-9]\.[0-9]\.[0-9]}}{{/|\\\\}}include" +-// CHECK-GENTOO-4-6-4: "-internal-externc-isystem" "[[SYSROOT]]/include" +-// CHECK-GENTOO-4-6-4: "-internal-externc-isystem" "[[SYSROOT]]/usr/include" +diff -urN llvm-3.4.1.src.orig/tools/clang/test/Driver/linux-ld.c llvm-3.4.1.src/tools/clang/test/Driver/linux-ld.c +--- llvm-3.4.1.src.orig/tools/clang/test/Driver/linux-ld.c 2014-04-11 22:31:22.000000000 +0200 ++++ llvm-3.4.1.src/tools/clang/test/Driver/linux-ld.c 1970-01-01 01:00:00.000000000 +0100 +@@ -1,730 +0,0 @@ +-// General tests that ld invocations on Linux targets sane. Note that we use +-// sysroot to make these tests independent of the host system. +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-32 %s +-// CHECK-LD-32-NOT: warning: +-// CHECK-LD-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-32: "{{.*}}/usr/lib/gcc/i386-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../.." +-// CHECK-LD-32: "-L[[SYSROOT]]/lib" +-// CHECK-LD-32: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64 %s +-// CHECK-LD-64-NOT: warning: +-// CHECK-LD-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-64: "--eh-frame-hdr" +-// CHECK-LD-64: "-m" "elf_x86_64" +-// CHECK-LD-64: "-dynamic-linker" +-// CHECK-LD-64: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-LD-64: "-L[[SYSROOT]]/lib" +-// CHECK-LD-64: "-L[[SYSROOT]]/usr/lib" +-// CHECK-LD-64: "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" +-// CHECK-LD-64: "-lc" +-// CHECK-LD-64: "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: -static-libgcc \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64-STATIC-LIBGCC %s +-// CHECK-LD-64-STATIC-LIBGCC-NOT: warning: +-// CHECK-LD-64-STATIC-LIBGCC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-64-STATIC-LIBGCC: "--eh-frame-hdr" +-// CHECK-LD-64-STATIC-LIBGCC: "-m" "elf_x86_64" +-// CHECK-LD-64-STATIC-LIBGCC: "-dynamic-linker" +-// CHECK-LD-64-STATIC-LIBGCC: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/lib" +-// CHECK-LD-64-STATIC-LIBGCC: "-L[[SYSROOT]]/usr/lib" +-// CHECK-LD-64-STATIC-LIBGCC: "-lgcc" "-lgcc_eh" +-// CHECK-LD-64-STATIC-LIBGCC: "-lc" +-// CHECK-LD-64-STATIC-LIBGCC: "-lgcc" "-lgcc_eh" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: -static \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64-STATIC %s +-// CHECK-LD-64-STATIC-NOT: warning: +-// CHECK-LD-64-STATIC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-LD-64-STATIC-NOT: "--eh-frame-hdr" +-// CHECK-LD-64-STATIC: "-m" "elf_x86_64" +-// CHECK-LD-64-STATIC-NOT: "-dynamic-linker" +-// CHECK-LD-64-STATIC: "-static" +-// CHECK-LD-64-STATIC: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbeginT.o" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/lib" +-// CHECK-LD-64-STATIC: "-L[[SYSROOT]]/usr/lib" +-// CHECK-LD-64-STATIC: "--start-group" "-lgcc" "-lgcc_eh" "-lc" "--end-group" +-// +-// Check that flags can be combined. The -static dominates. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux \ +-// RUN: -static-libgcc -static \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-LD-64-STATIC %s +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: --sysroot=%S/Inputs/multilib_32bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-32-TO-32 %s +-// CHECK-32-TO-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-32-TO-32: "{{.*}}/usr/lib/gcc/i386-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib/../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../.." +-// CHECK-32-TO-32: "-L[[SYSROOT]]/lib" +-// CHECK-32-TO-32: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m64 \ +-// RUN: --sysroot=%S/Inputs/multilib_32bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-32-TO-64 %s +-// CHECK-32-TO-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-32-TO-64: "{{.*}}/usr/lib/gcc/i386-unknown-linux/4.6.0/64{{/|\\\\}}crtbegin.o" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib/../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/../lib64" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../../../i386-unknown-linux/lib" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/i386-unknown-linux/4.6.0/../../.." +-// CHECK-32-TO-64: "-L[[SYSROOT]]/lib" +-// CHECK-32-TO-64: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m64 \ +-// RUN: --sysroot=%S/Inputs/multilib_64bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-64-TO-64 %s +-// CHECK-64-TO-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-64-TO-64: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib/../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/../lib64" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-64-TO-64: "-L[[SYSROOT]]/lib" +-// CHECK-64-TO-64: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m32 \ +-// RUN: --sysroot=%S/Inputs/multilib_64bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-64-TO-32 %s +-// CHECK-64-TO-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-64-TO-32: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32{{/|\\\\}}crtbegin.o" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib/../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../../../x86_64-unknown-linux/lib" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0/../../.." +-// CHECK-64-TO-32: "-L[[SYSROOT]]/lib" +-// CHECK-64-TO-32: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m32 \ +-// RUN: --gcc-toolchain=%S/Inputs/multilib_64bit_linux_tree/usr \ +-// RUN: --sysroot=%S/Inputs/multilib_32bit_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-64-TO-32-SYSROOT %s +-// CHECK-64-TO-32-SYSROOT: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-64-TO-32-SYSROOT: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32{{/|\\\\}}crtbegin.o" +-// CHECK-64-TO-32-SYSROOT: "-L{{[^"]*}}/Inputs/multilib_64bit_linux_tree/usr/lib/gcc/x86_64-unknown-linux/4.6.0/32" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-64-TO-32-SYSROOT: "-L{{[^"]*}}/Inputs/multilib_64bit_linux_tree/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/lib" +-// CHECK-64-TO-32-SYSROOT: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/fake_install_tree/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INSTALL-DIR-32 %s +-// CHECK-INSTALL-DIR-32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-INSTALL-DIR-32: "{{.*}}/Inputs/fake_install_tree/bin/../lib/gcc/i386-unknown-linux/4.7.0{{/|\\\\}}crtbegin.o" +-// CHECK-INSTALL-DIR-32: "-L{{.*}}/Inputs/fake_install_tree/bin/../lib/gcc/i386-unknown-linux/4.7.0" +-// +-// Check that with 64-bit builds, we don't actually use the install directory +-// as its version of GCC is lower than our sysrooted version. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-unknown-linux -m64 \ +-// RUN: -ccc-install-dir %S/Inputs/fake_install_tree/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-INSTALL-DIR-64 %s +-// CHECK-INSTALL-DIR-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-INSTALL-DIR-64: "{{.*}}/usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtbegin.o" +-// CHECK-INSTALL-DIR-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-unknown-linux/4.6.0" +-// +-// Check that we support unusual patch version formats, including missing that +-// component. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing1/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION1 %s +-// CHECK-GCC-VERSION1: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION1: "{{.*}}/Inputs/gcc_version_parsing1/bin/../lib/gcc/i386-unknown-linux/4.7{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION1: "-L{{.*}}/Inputs/gcc_version_parsing1/bin/../lib/gcc/i386-unknown-linux/4.7" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing2/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION2 %s +-// CHECK-GCC-VERSION2: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION2: "{{.*}}/Inputs/gcc_version_parsing2/bin/../lib/gcc/i386-unknown-linux/4.7.x{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION2: "-L{{.*}}/Inputs/gcc_version_parsing2/bin/../lib/gcc/i386-unknown-linux/4.7.x" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing3/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION3 %s +-// CHECK-GCC-VERSION3: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION3: "{{.*}}/Inputs/gcc_version_parsing3/bin/../lib/gcc/i386-unknown-linux/4.7.99-rc5{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION3: "-L{{.*}}/Inputs/gcc_version_parsing3/bin/../lib/gcc/i386-unknown-linux/4.7.99-rc5" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux -m32 \ +-// RUN: -ccc-install-dir %S/Inputs/gcc_version_parsing4/bin \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-GCC-VERSION4 %s +-// CHECK-GCC-VERSION4: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-GCC-VERSION4: "{{.*}}/Inputs/gcc_version_parsing4/bin/../lib/gcc/i386-unknown-linux/4.7.99{{/|\\\\}}crtbegin.o" +-// CHECK-GCC-VERSION4: "-L{{.*}}/Inputs/gcc_version_parsing4/bin/../lib/gcc/i386-unknown-linux/4.7.99" +-// +-// Test a very broken version of multiarch that shipped in Ubuntu 11.04. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-unknown-linux \ +-// RUN: --sysroot=%S/Inputs/ubuntu_11.04_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-11-04 %s +-// CHECK-UBUNTU-11-04: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-11-04: "{{.*}}/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../../i386-linux-gnu" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5/../../../.." +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/lib" +-// CHECK-UBUNTU-11-04: "-L[[SYSROOT]]/usr/lib" +-// +-// Check multi arch support on Ubuntu 12.04 LTS. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-unknown-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/ubuntu_12.04_LTS_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-12-04-ARM-HF %s +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf{{/|\\\\}}crt1.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf{{/|\\\\}}crti.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3{{/|\\\\}}crtbegin.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabihf/4.6.3" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/lib/arm-linux-gnueabihf" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/arm-linux-gnueabihf" +-// CHECK-UBUNTU-12-04-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../.." +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3{{/|\\\\}}crtend.o" +-// CHECK-UBUNTU-12-04-ARM-HF: "{{.*}}/usr/lib/gcc/arm-linux-gnueabihf/4.6.3/../../../arm-linux-gnueabihf{{/|\\\\}}crtn.o" +-// +-// Check Ubuntu 13.10 on x86-64 targeting arm-linux-gnueabihf. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/x86-64_ubuntu_13.10 \ +-// RUN: | FileCheck --check-prefix=CHECK-X86-64-UBUNTU-13-10-ARM-HF %s +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-dynamic-linker" "/lib/ld-linux-armhf.so.3" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib{{/|\\\\}}crt1.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib{{/|\\\\}}crti.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8{{/|\\\\}}crtbegin.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8{{/|\\\\}}crtend.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM-HF: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabihf/4.8/../../../../arm-linux-gnueabihf/lib/../lib{{/|\\\\}}crtn.o" +-// +-// Check Ubuntu 13.10 on x86-64 targeting arm-linux-gnueabi. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabi \ +-// RUN: --sysroot=%S/Inputs/x86-64_ubuntu_13.10 \ +-// RUN: | FileCheck --check-prefix=CHECK-X86-64-UBUNTU-13-10-ARM %s +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-dynamic-linker" "/lib/ld-linux.so.3" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib{{/|\\\\}}crt1.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib{{/|\\\\}}crti.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7{{/|\\\\}}crtbegin.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabi/4.7" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/../lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "-L[[SYSROOT]]/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7{{/|\\\\}}crtend.o" +-// CHECK-X86-64-UBUNTU-13-10-ARM: "{{.*}}/usr/lib/gcc-cross/arm-linux-gnueabi/4.7/../../../../arm-linux-gnueabi/lib/../lib{{/|\\\\}}crtn.o" +-// +-// Check fedora 18 on arm. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=armv7-unknown-linux-gnueabihf \ +-// RUN: --sysroot=%S/Inputs/fedora_18_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-FEDORA-18-ARM-HF %s +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib{{/|\\\\}}crt1.o" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib{{/|\\\\}}crti.o" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2{{/|\\\\}}crtbegin.o" +-// CHECK-FEDORA-18-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2" +-// CHECK-FEDORA-18-ARM-HF: "-L[[SYSROOT]]/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2{{/|\\\\}}crtend.o" +-// CHECK-FEDORA-18-ARM-HF: "{{.*}}/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.7.2/../../../../lib{{/|\\\\}}crtn.o" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-unknown-linux-gnueabi \ +-// RUN: --sysroot=%S/Inputs/ubuntu_12.04_LTS_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-UBUNTU-12-04-ARM %s +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi{{/|\\\\}}crt1.o" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi{{/|\\\\}}crti.o" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1{{/|\\\\}}crtbegin.o" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabi/4.6.1" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/lib/arm-linux-gnueabi" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/arm-linux-gnueabi" +-// CHECK-UBUNTU-12-04-ARM: "-L[[SYSROOT]]/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../.." +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1{{/|\\\\}}crtend.o" +-// CHECK-UBUNTU-12-04-ARM: "{{.*}}/usr/lib/gcc/arm-linux-gnueabi/4.6.1/../../../arm-linux-gnueabi{{/|\\\\}}crtn.o" +-// +-// Test the setup that shipped in SUSE 10.3 on ppc64. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc64-suse-linux \ +-// RUN: --sysroot=%S/Inputs/suse_10.3_ppc64_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-SUSE-10-3-PPC64 %s +-// CHECK-SUSE-10-3-PPC64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-SUSE-10-3-PPC64: "{{.*}}/usr/lib/gcc/powerpc64-suse-linux/4.1.2/64{{/|\\\\}}crtbegin.o" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-suse-linux/4.1.2/64" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-suse-linux/4.1.2/../../../../lib64" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-SUSE-10-3-PPC64: "-L[[SYSROOT]]/usr/lib/../lib64" +-// +-// Check dynamic-linker for different archs +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabi \ +-// RUN: | FileCheck --check-prefix=CHECK-ARM %s +-// CHECK-ARM: "{{.*}}ld{{(.exe)?}}" +-// CHECK-ARM: "-m" "armelf_linux_eabi" +-// CHECK-ARM: "-dynamic-linker" "{{.*}}/lib/ld-linux.so.3" +-// +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-gnueabihf \ +-// RUN: | FileCheck --check-prefix=CHECK-ARM-HF %s +-// CHECK-ARM-HF: "{{.*}}ld{{(.exe)?}}" +-// CHECK-ARM-HF: "-m" "armelf_linux_eabi" +-// CHECK-ARM-HF: "-dynamic-linker" "{{.*}}/lib/ld-linux-armhf.so.3" +-// +-// Check that we do not pass --hash-style=gnu and --hash-style=both to linker +-// and provide correct path to the dynamic linker and emulation mode when build +-// for MIPS platforms. +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS %s +-// CHECK-MIPS: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS: "-m" "elf32btsmip" +-// CHECK-MIPS: "-dynamic-linker" "{{.*}}/lib/ld.so.1" +-// CHECK-MIPS-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPSEL %s +-// CHECK-MIPSEL: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPSEL: "-m" "elf32ltsmip" +-// CHECK-MIPSEL: "-dynamic-linker" "{{.*}}/lib/ld.so.1" +-// CHECK-MIPSEL-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64 %s +-// CHECK-MIPS64: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64: "-m" "elf64btsmip" +-// CHECK-MIPS64: "-dynamic-linker" "{{.*}}/lib64/ld.so.1" +-// CHECK-MIPS64-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64EL %s +-// CHECK-MIPS64EL: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64EL: "-m" "elf64ltsmip" +-// CHECK-MIPS64EL: "-dynamic-linker" "{{.*}}/lib64/ld.so.1" +-// CHECK-MIPS64EL-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu -mabi=n32 \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64-N32 %s +-// CHECK-MIPS64-N32: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64-N32: "-m" "elf32btsmipn32" +-// CHECK-MIPS64-N32: "-dynamic-linker" "{{.*}}/lib32/ld.so.1" +-// CHECK-MIPS64-N32-NOT: "--hash-style={{gnu|both}}" +-// RUN: %clang %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu -mabi=n32 \ +-// RUN: | FileCheck --check-prefix=CHECK-MIPS64EL-N32 %s +-// CHECK-MIPS64EL-N32: "{{.*}}ld{{(.exe)?}}" +-// CHECK-MIPS64EL-N32: "-m" "elf32ltsmipn32" +-// CHECK-MIPS64EL-N32: "-dynamic-linker" "{{.*}}/lib32/ld.so.1" +-// CHECK-MIPS64EL-N32-NOT: "--hash-style={{gnu|both}}" +-// +-// Thoroughly exercise the Debian multiarch environment. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i686-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86 %s +-// CHECK-DEBIAN-X86: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86: "{{.*}}/usr/lib/gcc/i686-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../../i386-linux-gnu" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/i386-linux-gnu" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib/gcc/i686-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-X86: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=x86_64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-X86-64 %s +-// CHECK-DEBIAN-X86-64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-X86-64: "{{.*}}/usr/lib/gcc/x86_64-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../../x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/x86_64-linux-gnu" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib/gcc/x86_64-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-X86-64: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC %s +-// CHECK-DEBIAN-PPC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC: "{{.*}}/usr/lib/gcc/powerpc-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../../powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/powerpc-linux-gnu" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib/gcc/powerpc-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-PPC: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-PPC64 %s +-// CHECK-DEBIAN-PPC64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-PPC64: "{{.*}}/usr/lib/gcc/powerpc64-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../../powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/powerpc64-linux-gnu" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib/gcc/powerpc64-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-PPC64: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS %s +-// CHECK-DEBIAN-MIPS: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS: "{{.*}}/usr/lib/gcc/mips-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../../mips-linux-gnu" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/mips-linux-gnu" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPSEL %s +-// CHECK-DEBIAN-MIPSEL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.5{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../../mipsel-linux-gnu" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/mipsel-linux-gnu" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPSEL: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64 %s +-// CHECK-DEBIAN-MIPS64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64: "{{.*}}/usr/lib/gcc/mips-linux-gnu/4.5/64{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/64" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64EL %s +-// CHECK-DEBIAN-MIPS64EL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.5/64{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/64" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64EL: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64-linux-gnu -mabi=n32 \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64-N32 %s +-// CHECK-DEBIAN-MIPS64-N32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64-N32: "{{.*}}/usr/lib/gcc/mips-linux-gnu/4.5/n32{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/n32" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib/gcc/mips-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64-N32: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu -mabi=n32 \ +-// RUN: --sysroot=%S/Inputs/debian_multiarch_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-MIPS64EL-N32 %s +-// CHECK-DEBIAN-MIPS64EL-N32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.5/n32{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/n32" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.5/../../.." +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib" +-// +-// Test linker invocation on Android. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID %s +-// CHECK-ANDROID: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID: "{{.*}}{{/|\\\\}}crtbegin_dynamic.o" +-// CHECK-ANDROID: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-NOT: "gcc_s" +-// CHECK-ANDROID: "-lgcc" +-// CHECK-ANDROID: "-ldl" +-// CHECK-ANDROID-NOT: "gcc_s" +-// CHECK-ANDROID: "{{.*}}{{/|\\\\}}crtend_android.o" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -shared \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-SO %s +-// CHECK-ANDROID-SO: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID-SO: "-Bsymbolic" +-// CHECK-ANDROID-SO: "{{.*}}{{/|\\\\}}crtbegin_so.o" +-// CHECK-ANDROID-SO: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-SO-NOT: "gcc_s" +-// CHECK-ANDROID-SO: "-lgcc" +-// CHECK-ANDROID-SO: "-ldl" +-// CHECK-ANDROID-SO-NOT: "gcc_s" +-// CHECK-ANDROID-SO: "{{.*}}{{/|\\\\}}crtend_so.o" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -static \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-STATIC %s +-// CHECK-ANDROID-STATIC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID-STATIC: "{{.*}}{{/|\\\\}}crtbegin_static.o" +-// CHECK-ANDROID-STATIC: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-STATIC-NOT: "gcc_s" +-// CHECK-ANDROID-STATIC: "-lgcc" +-// CHECK-ANDROID-STATIC-NOT: "-ldl" +-// CHECK-ANDROID-STATIC-NOT: "gcc_s" +-// CHECK-ANDROID-STATIC: "{{.*}}{{/|\\\\}}crtend_android.o" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-androideabi \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=arm-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=i386-linux-android \ +-// RUN: --sysroot=%S/Inputs/basic_android_tree/sysroot \ +-// RUN: -pie \ +-// RUN: | FileCheck --check-prefix=CHECK-ANDROID-PIE %s +-// CHECK-ANDROID-PIE: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-ANDROID-PIE: "{{.*}}{{/|\\\\}}crtbegin_dynamic.o" +-// CHECK-ANDROID-PIE: "-L[[SYSROOT]]/usr/lib" +-// CHECK-ANDROID-PIE-NOT: "gcc_s" +-// CHECK-ANDROID-PIE: "-lgcc" +-// CHECK-ANDROID-PIE-NOT: "gcc_s" +-// CHECK-ANDROID-PIE: "{{.*}}{{/|\\\\}}crtend_android.o" +-// +-// Check linker invocation on Debian 6 MIPS 32/64-bit. +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mipsel-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_6_mips_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-ML-MIPSEL %s +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib{{/|\\\\}}crt1.o" +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib{{/|\\\\}}crti.o" +-// CHECK-DEBIAN-ML-MIPSEL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/lib/../lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/../lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../.." +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-ML-MIPSEL: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu \ +-// RUN: --sysroot=%S/Inputs/debian_6_mips_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-ML-MIPS64EL %s +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib64{{/|\\\\}}crt1.o" +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib64{{/|\\\\}}crti.o" +-// CHECK-DEBIAN-ML-MIPS64EL: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/64{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/lib/../lib64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/../lib64" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../.." +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-ML-MIPS64EL: "-L[[SYSROOT]]/usr/lib" +-// +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=mips64el-linux-gnu -mabi=n32 \ +-// RUN: --sysroot=%S/Inputs/debian_6_mips_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-DEBIAN-ML-MIPS64EL-N32 %s +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib32{{/|\\\\}}crt1.o" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib32{{/|\\\\}}crti.o" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "{{.*}}/usr/lib/gcc/mipsel-linux-gnu/4.4/n32{{/|\\\\}}crtbegin.o" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/n32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../../../lib32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/lib/../lib32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/../lib32" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib/gcc/mipsel-linux-gnu/4.4/../../.." +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/lib" +-// CHECK-DEBIAN-ML-MIPS64EL-N32: "-L[[SYSROOT]]/usr/lib" +-// +-// Test linker invocation for Freescale SDK (OpenEmbedded). +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc-fsl-linux \ +-// RUN: --sysroot=%S/Inputs/freescale_ppc_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-FSL-PPC %s +-// CHECK-FSL-PPC: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-FSL-PPC: "-m" "elf32ppclinux" +-// CHECK-FSL-PPC: "{{.*}}{{/|\\\\}}crt1.o" +-// CHECK-FSL-PPC: "{{.*}}{{/|\\\\}}crtbegin.o" +-// CHECK-FSL-PPC: "-L[[SYSROOT]]/usr/lib" +-// RUN: %clang -no-canonical-prefixes %s -### -o %t.o 2>&1 \ +-// RUN: --target=powerpc64-fsl-linux \ +-// RUN: --sysroot=%S/Inputs/freescale_ppc64_tree \ +-// RUN: | FileCheck --check-prefix=CHECK-FSL-PPC64 %s +-// CHECK-FSL-PPC64: "{{.*}}ld{{(.exe)?}}" "--sysroot=[[SYSROOT:[^"]+]]" +-// CHECK-FSL-PPC64: "-m" "elf64ppc" +-// CHECK-FSL-PPC64: "{{.*}}{{/|\\\\}}crt1.o" +-// CHECK-FSL-PPC64: "{{.*}}{{/|\\\\}}crtbegin.o" +-// CHECK-FSL-PPC64: "-L[[SYSROOT]]/usr/lib64/powerpc64-fsl-linux/4.6.2/../.." +-// +-// Check that crtfastmath.o is linked with -ffast-math and with -Ofast. +-// RUN: %clang --target=x86_64-unknown-linux -### %s \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -ffast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -funsafe-math-optimizations\ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -Ofast\ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -Ofast -O3\ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -O3 -Ofast\ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -ffast-math -fno-fast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -Ofast -fno-fast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -Ofast -fno-unsafe-math-optimizations \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -fno-fast-math -Ofast \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// RUN: %clang --target=x86_64-unknown-linux -### %s -fno-unsafe-math-optimizations -Ofast \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-CRTFASTMATH %s +-// We don't have crtfastmath.o in the i386 tree, use it to check that file +-// detection works. +-// RUN: %clang --target=i386-unknown-linux -### %s -ffast-math \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>&1 \ +-// RUN: | FileCheck --check-prefix=CHECK-NOCRTFASTMATH %s +-// CHECK-CRTFASTMATH: usr/lib/gcc/x86_64-unknown-linux/4.6.0{{/|\\\\}}crtfastmath.o +-// CHECK-NOCRTFASTMATH-NOT: crtfastmath.o +- +-// Check that we link in gcrt1.o when compiling with -pg +-// RUN: %clang -pg --target=x86_64-unknown-linux -### %s \ +-// RUN: --sysroot=%S/Inputs/basic_linux_tree 2>& 1 \ +-// RUN: | FileCheck --check-prefix=CHECK-PG %s +-// CHECK-PG: gcrt1.o diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.1-pic-crt.patch b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-pic-crt.patch new file mode 100644 index 0000000000000000000000000000000000000000..6964081bcb9b5295b57bc84c14943e37aab6b5c3 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.1-pic-crt.patch @@ -0,0 +1,17 @@ +# crtbeginS.o and crtendS.o come with GCC and are not at their default locations when +# building with easybuild. So we allow a prefix. +# by wpoely86@gmail.com +diff -urN llvm-3.4.orig/tools/clang/test/Driver/pic.c llvm-3.4/tools/clang/test/Driver/pic.c +--- llvm-3.4.orig/tools/clang/test/Driver/pic.c 2013-10-04 13:46:54.000000000 +0200 ++++ llvm-3.4/tools/clang/test/Driver/pic.c 2014-04-25 11:23:30.772175180 +0200 +@@ -21,8 +21,8 @@ + // + // CHECK-PIE-LD: "{{.*}}ld{{(.exe)?}}" + // CHECK-PIE-LD: "-pie" +-// CHECK-PIE-LD: "Scrt1.o" "crti.o" "crtbeginS.o" +-// CHECK-PIE-LD: "crtendS.o" "crtn.o" ++// CHECK-PIE-LD: "Scrt1.o" "crti.o" "{{.*}}crtbeginS.o" ++// CHECK-PIE-LD: "{{.*}}crtendS.o" "crtn.o" + // + // CHECK-NOPIE-LD: "-nopie" + // diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..f425fcd86e4ed8f5da0d0062fc852448872ed2cc --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.4.2-GCC-4.8.2.eb @@ -0,0 +1,60 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014 Dmitri Gribenko, Ward Poelmans +# Authors:: Dmitri Gribenko +# Authors:: Ward Poelmans +# License:: GPLv2 or later, MIT, three-clause BSD. +# $Id$ +## + +name = "Clang" +version = "3.4.2" + +homepage = "http://clang.llvm.org/" +description = """C, C++, Objective-C compiler, based on LLVM. Does not + include C++ standard library -- use libstdc++ from GCC.""" + +# Clang also depends on libstdc++ during runtime, but this dependency is +# already specified as the toolchain. +toolchain = {'name': 'GCC', 'version': '4.8.2'} +# Do not set optarch to True: it will cause the build to fail +toolchainopts = {'optarch': False} + +source_urls = [ + "http://llvm.org/releases/%(version)s", + "http://llvm.org/releases/%(version_major_minor)s", +] + +sources = [ + "llvm-%(version)s.src.tar.gz", + "cfe-%(version)s.src.tar.gz", + "compiler-rt-%(version_major_minor)s.src.tar.gz", + "polly-%(version_major_minor)s.src.tar.gz", +] + +patches = [ + # Remove some tests that fail because of -DGCC_INSTALL_PREFIX. The issue is + # that hardcoded GCC_INSTALL_PREFIX overrides -sysroot. This probably breaks + # cross-compilation. + # http://lists.cs.uiuc.edu/pipermail/cfe-commits/Week-of-Mon-20130401/077539.html + 'Clang-3.4.1-failing-tests-due-to-gcc-installation-prefix.patch', + 'Clang-%(version_major_minor)s-failing-sanitizer-tests.patch', + 'Clang-%(version_major_minor)s-llvm-ar-uid.patch', + 'Clang-3.4.1-pic-crt.patch', +] + +builddependencies = [('CMake', '2.8.12')] + +dependencies = [ + ('GMP', '5.1.3'), + ('CLooG', '0.18.1'), +] + +assertions = False + +usepolly = True + +build_targets = ['X86'] + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/c/ClangGCC/ClangGCC-1.3.0.eb b/easybuild/easyconfigs/c/ClangGCC/ClangGCC-1.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ed2fa73c3cd83769f8f287859ffc41b1e87b416e --- /dev/null +++ b/easybuild/easyconfigs/c/ClangGCC/ClangGCC-1.3.0.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'ClangGCC' +version = '1.3.0' + +homepage = '(none)' +description = """Clang and GCC based compiler toolchain. Clang will use libstdc++. +GFortran will be used to compile Fortran code.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp = ('GCC', '4.8.2') +dependencies = [ + comp, + ('Clang', '3.4', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb index ec43e8ac617268cba9bb2b2abbf4fe1cb560a0fe..4286aeb066ba9a24f31a8fb14ef946c85df819ee 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Clustal-Omega' version = '1.2.0' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index 04e6dfe312fefbba458f56c1cea666da10864ee5..141abe9b6a5f8592a83f2c77d0ac50e169724ecb 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index 4fa5a6e2e1d42f2bc5a15a507081dddced2da642..0c4dba86a682493e50a48e6290da78335763201a 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index c12d39a43eb854354f6d9f32b94ac892f9aad20f..93dc9500bdd473acd219edb8d495cc22b240cecf 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 2fac5aabee97723fdf95dcc01651b0578ed10668..381ad621a9993d0e1430a6c0384997895a08b457 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb index bd182d78c130d62bbd2c648b8e4bea18c4040f93..cfe41742aecad1c151b19e8081ae799f22fc740a 100644 --- a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Coreutils" version = "8.22" diff --git a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb index 3eae868790b948c2feef8b92a49da8cbcd184350..7e921a133ce99e8fdccac9697a4279a904f3de13 100644 --- a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Coreutils" version = "8.22" diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index d742fcbfa6120f72690caeee4385bbd27780ab4b..6a4d78599df6cbe7e7c78ed3c5a8a6a0044387fc 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 410cf7e554112ea7c7826f987abc5f7c744daa46..7810f1ee53b8681b5930bf3b011fadee9f1b3494 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index 465ec2ad76bf96dd914750fd7e1cb624410fb4b5..3d22de6dc88436a9416b7520561eab60701f5af1 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index e298537f12517296ca70fe753e302554f1d06f28..5f4aa901ed7f2eb5f76c0f3f09aa51706e0571f4 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb index 71977159d4f1655eab290329886bfc92b5ec150f..b1b5830754fac02a2f1b9ab65cc20b25ffb53be4 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "Cube" version = "3.4.3" diff --git a/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb b/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..fee6df968e2f5d81b1c7c818d8e1531d47af4ddd --- /dev/null +++ b/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb @@ -0,0 +1,27 @@ +easyblock = "PackedBinary" + +name = "Cuby" +version = '4' + +homepage = 'http://cuby.molecular.cz/cuby4/' +description = """Cuby is a computational chemistry framework written in ruby. + For users, it provides an unified access to various computational + methods available in difefrent software packages. For developers, + Cuby is much more - it is a complex framework that provides + object-oriented access to the data enetering the calculations and + to their results, making it easy to create new computational + protocols by combining existing blocks of the framework.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +#Source can be obtained via http://cuby.molecular.cz/?page=Downloads +sources = ['cuby4.tgz'] + +dependencies = [('Ruby', '2.1.5')] + +sanity_check_paths = { + 'files': ['cuby4%s' % x for x in ['', '.rb' ]], + 'dirs': ['classes'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index b12bdd90da1e7b07fd956c7b04c74e7332e6f802..5811e9598e04a2ce0871171744f42c3c5b1cbd45 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -20,7 +20,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cufflinks.cbcb.umd.edu/downloads/'] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] dependencies = [ ('Boost', '1.51.0', '-Python-2.7.3'), @@ -29,8 +29,8 @@ dependencies = [ ('zlib', '1.2.7'), ] -configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS/lib}' -preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' +configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' +preconfigopts = 'CPPFLAGS="-I$EBROOTEIGEN/include $CPPFLAGS" LDFLAGS="-lboost_system $LDFLAGS" ' sanity_check_paths = { 'files': ['bin/cufflinks'], diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index 370e22c4e2397465af1075da5aa7487db9245553..ac13453d765635e09ed2a9fe98b568091ff99bab 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -20,7 +20,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cufflinks.cbcb.umd.edu/downloads/'] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] dependencies = [ ('Boost', '1.51.0', '-Python-2.7.3'), @@ -31,8 +31,8 @@ dependencies = [ patches = ['Cufflinks_GCC-4.7.patch'] -configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS/lib}' -preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' +configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' +preconfigopts = 'CPPFLAGS="-I$EBROOTEIGEN/include $CPPFLAGS" LDFLAGS="-lboost_system $LDFLAGS" ' sanity_check_paths = { 'files': ['bin/cufflinks'], diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..006624d25267895fac4201b852b2749249648896 --- /dev/null +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# Jens Timmerman (Ghent University) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Cufflinks' +version = '2.0.2' + +homepage = 'http://cufflinks.cbcb.umd.edu/' +description = """Transcript assembly, differential expression, and differential regulation for RNA-Seq""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] + +patches = ['Cufflinks-2.1.1_init-error.patch'] + +dependencies = [ + ('Boost', '1.51.0', '-Python-2.7.3'), + ('SAMtools', '0.1.18'), + ('Eigen', '3.1.1'), + ('zlib', '1.2.7'), +] + +configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' +configopts += ' --enable-intel64 ' +preconfigopts = 'CPPFLAGS="-I$EBROOTEIGEN/include $CPPFLAGS" LDFLAGS="-lboost_system $LDFLAGS" ' + +sanity_check_paths = { + 'files': ['bin/cufflinks'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b007f4125335ea1e5b8f0c9f8564f466c8a1106a --- /dev/null +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -0,0 +1,43 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# Jens Timmerman (Ghent University) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Cufflinks' +version = '2.1.1' + +homepage = 'http://cufflinks.cbcb.umd.edu/' +description = """Transcript assembly, differential expression, and differential regulation for RNA-Seq""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] + +patches = ['Cufflinks-2.1.1_init-error.patch'] + +dependencies = [ + ('Boost', '1.55.0', '-Python-2.7.6'), + ('SAMtools', '0.1.19'), + ('Eigen', '3.2.0'), + ('zlib', '1.2.7'), +] + +configopts = '--enable-intel64 --with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' +preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' + +sanity_check_paths = { + 'files': ['bin/cufflinks'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1_init-error.patch b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1_init-error.patch new file mode 100644 index 0000000000000000000000000000000000000000..199023308cae0a6af1a74f93516939486324fe80 --- /dev/null +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1_init-error.patch @@ -0,0 +1,34 @@ +# patch by Jens Timmerman (Ghent University) +# discussed here: http://stackoverflow.com/questions/20100602/is-initializing-a-reference-of-type-int-not-const-qualified-with-a-value-o +--- src/rounding.h.orig 2013-11-20 18:03:13.211025464 +0100 ++++ src/rounding.h 2013-11-20 18:03:22.850887431 +0100 +@@ -165,29 +165,6 @@ + } + + //-------------------------------------------------------------------------- +- // round alternate +- // Bias: none for sequential calls +- bool _is_up = false; +- template +- FloatType roundalternate( const FloatType& value, int& is_up = _is_up ) +- { +- if ((is_up != is_up)) +- return roundhalfup( value ); +- return roundhalfdown( value ); +- } +- +- //-------------------------------------------------------------------------- +- // symmetric round alternate +- // Bias: none for sequential calls +- template +- FloatType roundalternate0( const FloatType& value, int& is_up = _is_up ) +- { +- if ((is_up != is_up)) +- return roundhalfup0( value ); +- return roundhalfdown0( value ); +- } +- +- //-------------------------------------------------------------------------- + // round random + // Bias: generator's bias + template diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..43da714323fdde6ed1031d9eb95f25a6c4a469b6 --- /dev/null +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb @@ -0,0 +1,29 @@ +name = 'Cufflinks' +version = '2.2.1' + +homepage = 'http://cole-trapnell-lab.github.io/cufflinks/' +description = """Transcript assembly, differential expression, and differential regulation for RNA-Seq""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] + +dependencies = [ + # issues with boost > 1.55, see https://github.com/cole-trapnell-lab/cufflinks/issues/3 + ('Boost', '1.55.0', '-Python-2.7.8'), + ('SAMtools', '0.1.19'), + ('Eigen', '3.2.3'), + ('zlib', '1.2.8'), +] + +configopts = '--enable-intel64 --with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' +preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' + +sanity_check_paths = { + 'files': ['bin/cufflinks'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb index a849d8c43779bbafc2908681555bd6246b3eeb3f..d19a93b8f72527079cc26dad8b5d6d014fdb8f88 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb index 66dcf70098465098a88f4094b0c34ba730e9d300..308d2908fddce51e6f02483ca4e95d4ffcc0d027 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb index 0c6b8da2718fb3d04e515d392e8093da5ffd07e7..08677ae0d02b6c473bd06315a5b4ce028f5810cd 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb index 595b5ff8ef8ad704f041df751e9a017b243a2f56..22ed00385f32287c7eab50b12fd3639154d6ea5b 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.so"], 'dirs': ["lib/pkgconfig"], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb index e9c87dab37040832de67dfc65af44b86e221b1aa..f0fe3d92ae56861ddc3758693c80ea8642dcff84 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' @@ -9,15 +11,18 @@ description = """libcurl is a free and easy-to-use client-side URL transfer libr proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { - 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.so"], - 'dirs': ["lib/pkgconfig"], - } + 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.so"], + 'dirs': ["lib/pkgconfig"], +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb index 0b0ea92016c3bfd16e26667df7c538ee30f18a1c..aa170c9bf2fc00f22477a2602141fea0f956ed77 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.28.1' @@ -14,6 +16,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb index fa10cf6767c18fca196a43c354fbe01a2c09c700..2cbb5547123128d12b5b4b4b9c0fa8948ce89ef8 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.28.1' @@ -14,6 +16,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb index e7d827cb2bf9ad130df297f89afcf4cfae396f3d..549dfa692ae5583b8d81f8415cdde8ba76d6b577 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.28.1' @@ -14,6 +16,10 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb index 0d8cc6862b6fcb2d7459d98c0fb54dfacadff33f..4d7a07a71f59e9e4fae7075af2178c435d98d424 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'cgmpolf', 'version': '1.1.6'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb index 7539c035d4cb534fb6df8883db4c6099410cc418..d9c35ea662745f61f492b0a289a5d183e3b66f3b 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'cgmvolf', 'version': '1.1.12rc1'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb index b37b53e186bcad9045858527936d0fe8aafec544..b5148412f3b53d3106326911de7ee78ea6641f44 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'cgmvolf', 'version': '1.2.7'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb index d75f9e8b342604bf7991609de5ef1e328b732dc2..5062e4abe854fceb42a816b210c2f320a58e3970 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'cgoolf', 'version': '1.1.7'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb index 59b0c5e740b19becc418c4a0b06790ac0993a8e4..63311d78498ca78f8ae28784bb01748434052b60 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'gmvolf', 'version': '1.7.12'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb index 2c5b0c0358e490916cbdb1d3358dcf773897dd6a..070c2757094ad12232722484e841971a4b104fda 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'gmvolf', 'version': '1.7.12rc1'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb index 6cda312b70c0ded046db38e4d5dd922c9cd736a6..cb387db31b0a6c3285c234e3d82c1361c5044685 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb index fe4413aa665abb197b5ea262dca4189debf2c31b..698a9cde210943ba9646fcb335f7d5d8b84e6220 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.33.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb index 65dd20560ec9b09a6bdb81b8c74d4fd4b2c383cc..ce886810a7e9fbd091cefc46d564fdeb164716b7 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.33.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..34d5cc05141dbb046d666d269b76e5621138b1d1 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.34.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb index a6459108066a3811d686d3adbea8bb33a42a9e70..c2ed6dbc333839dc41a497caeee6f446a6d76a95 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.34.0' @@ -14,6 +16,10 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +dependencies = [('OpenSSL', '1.0.1f')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], 'dirs': ['lib/pkgconfig'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3b257ff22bef2830d676ad5b8d005088a1e377fa --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.37.1' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +osdependencies = [('openssl-devel', 'libssl-dev')] + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..044a3da83e127fa7a0c648148d7d741f3e9fe68d --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.37.1' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +osdependencies = [('openssl-devel', 'libssl-dev')] + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..7009ac53e5614bc1a08b593815f3f3281c8aa011 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.40.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +# dependencies = [('OpenSSL', '1.0.1k')] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# configopts = "--with-ssl=$EBROOTOPENSSL" + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8c7d1b97221614395c65dd645e0d67c1eac1ef0 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.40.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..7a5f70d69373af3073ccc65f9fc48bdabc12389c --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.40.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +# dependencies = [('OpenSSL', '1.0.1k')] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# configopts = "--with-ssl=$EBROOTOPENSSL" + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb index 6264b44320b4abe831ed9a3248bae160fc893abb..ba51ef15a53bb1340f1c43d8d42b98a2bfb207a7 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' @@ -21,4 +23,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb index fe30ba2cfb9f9362acb0b593a5abe10ce46bf475..4d208e316feea5a8d039b7a2ec2c4d053582be08 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' @@ -21,4 +23,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb index 768941a832b96391b32fdd438bc0c1bec036a2cf..c0e4224f632a3bffb6c925e75f9bdd8b2ed326b4 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb index c623937595ebfd8b8167bd369929c906c338ce05..84f0328a9fc0821f808b887fe586d0c2b111ef14 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' @@ -21,4 +23,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..6f945ad25bee51895a91a1c15ea1a8a1940e9768 --- /dev/null +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = "cairo" +version = '1.12.18' + +homepage = 'http://cairographics.org' +description = """Cairo is a 2D graphics library with support for multiple output devices. +Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, +PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_XZ] + +dependencies = [ + ('libpng', '1.6.12'), + ('freetype', '2.5.3'), + ('zlib', '1.2.8'), + ('pixman', '0.32.6'), + ('fontconfig', '2.11.1'), + ('expat', '2.1.0'), + ('bzip2', '1.0.6'), +] + +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index bc8cca8be6381d4d36b8b2db762442610fe3a0af..48fcc47836307819f59e375ff2e71f45514e236c 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index e2a244a191f97f1a0dc8e9308b86fed46b761fd1..b642a5d551a80e47129975d862504ff486919a4d 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 0a98f10dc33af92a33543d64410eb1c2747f716b..4137d5afc828ca0371083923fae2844f9d66bf0f 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index 4a7e7ae6d5f0ad848f58fc743b1b6c5e7cdecb0b..b15c9ceaf915a0de1b123f9d4a2e10c23530b414 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 59124fc81fe73c817bca0b18dadd18ab0c7bc756..315f43e190d51684e41fe86c15bd74ad022fd93e 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index 2fa549427b942817f3d75837c50ddba40a06c167..501b5edd24789f596e5d4c2cb7fdc2987631711a 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb index 626c5734180f5ac8b2700507c79ff80ca6f1d3c8..7c2775cbce86e2ce85d10420f9d573082f5a8aeb 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index a6c4166eeefccd47d0daf032c557145b2436dce1..848eb6e89975af24c6c20c5941c7015a76ca2802 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 431ca87c77d57c101a2a62c3e380c8a521d1b305..5a1aea2fb7d2bc3d079c3288e4f3284b72ea0aa7 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index fc097ab4be1a8cc38a5b1a3fe0d36f46de9b882d..5efc1c2d3ca161203507eaa94d5c65e36d92405a 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 01e152b6e906e2746c403aa8ec9a7b5cad6fe013..b3656ba859dd8a782950c67294bd82555b20c297 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index b15ac13090f5d93051164aaed30f2851f44c46d1..c3ce823fd97275f17cbd43765be4cfa9dc7b904b 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgmpich/cgmpich-1.1.6.eb b/easybuild/easyconfigs/c/cgmpich/cgmpich-1.1.6.eb index 860deab78b496505120099b2f6a091f51857ebed..1ab6db7c8831d7bb73f88cb42332708349119dc8 100644 --- a/easybuild/easyconfigs/c/cgmpich/cgmpich-1.1.6.eb +++ b/easybuild/easyconfigs/c/cgmpich/cgmpich-1.1.6.eb @@ -9,17 +9,13 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -compname = 'ClangGCC' -compver = '1.1.3' -comp = (compname, compver) - -mpilib = 'MPICH' -mpiver = '3.0.3' +comp = ('GCC', '4.7.3') # compiler toolchain dependencies dependencies = [ comp, - (mpilib, mpiver, '', comp), + ('Clang', '3.2', '', comp), + ('MPICH', '3.0.3', '', ('ClangGCC', '1.1.3')), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/cgmpolf/cgmpolf-1.1.6.eb b/easybuild/easyconfigs/c/cgmpolf/cgmpolf-1.1.6.eb index c1f26348aea5c281928c78607b9563ac149f43e3..ea2e02e0692076d852c367690b0a07acac5009e5 100644 --- a/easybuild/easyconfigs/c/cgmpolf/cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/c/cgmpolf/cgmpolf-1.1.6.eb @@ -9,9 +9,7 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -comp_name = 'ClangGCC' -comp_version = '1.1.3' -comp = (comp_name, comp_version) +comp = ('GCC', '4.7.3') blaslib = 'OpenBLAS' blasver = '0.2.6' @@ -28,7 +26,8 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # because of toolchain definition being verified against list of modules. dependencies = [ comp, - ('MPICH', '3.0.3', '', comp), # part of cgmpich-1.1.6 + ('Clang', '3.2', '', comp), + ('MPICH', '3.0.3', '', ('ClangGCC', '1.1.3')), # part of cgmpich-1.1.6 (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', blas, comp_mpi_tc), diff --git a/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.1.12rc1.eb b/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.1.12rc1.eb index 1aa26f2a27d833490a57e5fb55effb8e9e21c859..e83b35afb01874f1695f96520c677cf2a1384789 100644 --- a/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.1.12rc1.eb +++ b/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.1.12rc1.eb @@ -9,17 +9,13 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -compname = 'ClangGCC' -compver = '1.1.3' -comp = (compname, compver) - -mpilib = 'MVAPICH2' -mpiver = '1.9rc1' +comp = ('GCC', '4.7.3') # Compiler toolchain dependencies. dependencies = [ comp, - (mpilib, mpiver, '', comp), + ('Clang', '3.2', '', comp), + ('MVAPICH2', '1.9rc1', '', ('ClangGCC', '1.1.3')), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.2.7.eb b/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.2.7.eb index 5dee14d48ef200158aaa5117d54668fb7c441fb7..f76b3d33d07851e23256f5b868bcd4d6c61efcb1 100644 --- a/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.2.7.eb +++ b/easybuild/easyconfigs/c/cgmvapich2/cgmvapich2-1.2.7.eb @@ -9,15 +9,13 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -comp = ('ClangGCC', '1.2.3') - -mpilib = 'MVAPICH2' -mpiver = '1.9' +comp = ('GCC', '4.8.1') # Compiler toolchain dependencies. dependencies = [ comp, - (mpilib, mpiver, '', comp), + ('Clang', '3.3', '', comp), + ('MVAPICH2', '1.9', '', ('ClangGCC', '1.2.3')), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.1.12rc1.eb index 1c205652595e5ab0bfd54cee79beaedff43efa9c..85290fc5daab2738f237caf4dce144237f809755 100644 --- a/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.1.12rc1.eb @@ -9,9 +9,7 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -comp_name = 'ClangGCC' -comp_version = '1.1.3' -comp = (comp_name, comp_version) +comp = ('GCC', '4.7.3') blaslib = 'OpenBLAS' blasver = '0.2.6' @@ -27,8 +25,9 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # We need ClangGCC and MVAPICH2 as explicit dependencies instead of cgmvapich2 toolchain # because of toolchain definition being verified against list of modules. dependencies = [ - comp, - ('MVAPICH2', '1.9rc1', '', comp), # part of cgmvapich2-1.1.12rc1 + comp, # part of cgmvapich2 + ('Clang', '3.2', '', comp), # part of cgmvapich2 + ('MVAPICH2', '1.9rc1', '', ('ClangGCC', '1.1.3')), # part of cgmvapich2 (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', blas, comp_mpi_tc), diff --git a/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.2.7.eb b/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.2.7.eb index 318f73708ed827088325a77ba0459979c9d5cf35..d263ad0f7a369b7766c1878db838c003ffbc9fde 100644 --- a/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/c/cgmvolf/cgmvolf-1.2.7.eb @@ -9,7 +9,7 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -comp = ('ClangGCC', '1.2.3') +comp = ('GCC', '4.8.1') blaslib = 'OpenBLAS' blasver = '0.2.6' @@ -24,7 +24,8 @@ comp_mpi_tc = ('cgmvapich2', version) # because of toolchain definition being verified against list of modules. dependencies = [ comp, # part of cgmvapich2 - ('MVAPICH2', '1.9', '', comp), # part of cgmvapich2 + ('Clang', '3.3', '', comp), # part of cgmvapich2 + ('MVAPICH2', '1.9', '', ('ClangGCC', '1.2.3')), # part of cgmvapich2 (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), diff --git a/easybuild/easyconfigs/c/cgompi/cgompi-1.1.7.eb b/easybuild/easyconfigs/c/cgompi/cgompi-1.1.7.eb index 36f27224e67f94cc0f4f206b42ce81f5fdb896b7..93cdfc5f7893177ff689e2b7d3a51eddecf0b286 100644 --- a/easybuild/easyconfigs/c/cgompi/cgompi-1.1.7.eb +++ b/easybuild/easyconfigs/c/cgompi/cgompi-1.1.7.eb @@ -9,17 +9,13 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -compname = 'ClangGCC' -compver = '1.1.3' -comp = (compname, compver) - -mpilib = 'OpenMPI' -mpiver = '1.6.4' +comp = ('GCC', '4.7.3') # compiler toolchain dependencies dependencies = [ comp, - (mpilib, mpiver, '', comp), + ('Clang', '3.2', '', comp), + ('OpenMPI', '1.6.4', '', ('ClangGCC', '1.1.3')), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/cgoolf/cgoolf-1.1.7.eb b/easybuild/easyconfigs/c/cgoolf/cgoolf-1.1.7.eb index b48a116c5345204e6fe340e68a993c773225e8e5..17920940569471edfc38e12d9edb512d4065e516 100644 --- a/easybuild/easyconfigs/c/cgoolf/cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/c/cgoolf/cgoolf-1.1.7.eb @@ -9,9 +9,7 @@ description = """Clang and GFortran based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -comp_name = 'ClangGCC' -comp_version = '1.1.3' -comp = (comp_name, comp_version) +comp = ('GCC', '4.7.3') blaslib = 'OpenBLAS' blasver = '0.2.6' @@ -27,8 +25,9 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # We need ClangGCC and OpenMPI as explicit dependencies instead of cgompi toolchain # because of toolchain definition being verified against list of modules. dependencies = [ - comp, - ('OpenMPI', '1.6.4', '', comp), # part of cgompi-1.1.7 + comp, # part of cgompi + ('Clang', '3.2', '', comp), # part of cgompi + ('OpenMPI', '1.6.4', '', ('ClangGCC', '1.1.3')), # part of cgompi (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', blas, comp_mpi_tc), diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..287e08b07e911c44c58bcf476d41c37538292446 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'MakeCp' + +name = 'ctffind' +version = '140609' + +homepage = 'http://grigoriefflab.janelia.org/ctf' +description = """CTFFIND and CTFTILT are two programs for finding CTFs of electron micrographs.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] +sources = ['ctf_%(version)s.tar.gz'] + +buildopts = '-f Makefile_linux_mp' + +files_to_copy = [(["ctftilt_mp.exe", 'ctffind3_mp.exe'], "bin"), "README.txt"] + +sanity_check_paths = { + 'files': ["bin/ctftilt_mp.exe", 'bin/ctffind3_mp.exe'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..eab354f3cc3b0d33e9b4cd2907a01251cccfb067 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'MakeCp' + +name = 'ctffind' +version = '140609' + +homepage = 'http://grigoriefflab.janelia.org/ctf' +description = """CTFFIND and CTFTILT are two programs for finding CTFs of electron micrographs.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] +sources = ['ctf_%(version)s.tar.gz'] + +buildopts = '-f Makefile_linux_mp' + +files_to_copy = [(["ctftilt_mp.exe", 'ctffind3_mp.exe'], "bin"), "README.txt"] + +sanity_check_paths = { + 'files': ["bin/ctftilt_mp.exe", 'bin/ctffind3_mp.exe'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..70b9a6c76d450314b06ba112e93c223ccedb3f0f --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb @@ -0,0 +1,30 @@ +easyblock='MakeCp' + +name = 'ctffind' +version = '4.0.8' + +homepage = 'http://grigoriefflab.janelia.org/ctf' +description = """CTFFIND and CTFTILT are two programs for finding CTFs of electron micrographs.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://grigoriefflab.janelia.org/system/files/private/'] +sources = [SOURCE_TAR_GZ] + +patches = ['ctffind-%(version)s_nostd_value.patch'] + +dependencies = [('GSL', '1.16')] + +with_configure = True +configopts = 'FC="$F77"' + +parallel = 1 + +files_to_copy = [(['ctffind'], "bin")] + +sanity_check_paths = { + 'files': ['bin/ctffind'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch new file mode 100644 index 0000000000000000000000000000000000000000..5c29826586c13a11a1d1c90ecc09998386cf1962 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch @@ -0,0 +1,20 @@ +--- ctffind-4.0.8/Makefile.in.orig 2014-12-12 12:08:28.159297567 +0100 ++++ ctffind-4.0.8/Makefile.in 2014-12-12 12:08:44.935297601 +0100 +@@ -353,7 +353,7 @@ + @FC_IS_INTEL_TRUE@AM_FCFLAGS = -fpp -assume realloc_lhs -traceback \ + @FC_IS_INTEL_TRUE@ -heap-arrays -warn all -warn \ + @FC_IS_INTEL_TRUE@ notruncated_source -gen-interfaces -fpe0 \ +-@FC_IS_INTEL_TRUE@ -standard-semantics -assume nostd_value \ ++@FC_IS_INTEL_TRUE@ -standard-semantics \ + @FC_IS_INTEL_TRUE@ -init=snan $(am__append_27) $(am__append_30) \ + @FC_IS_INTEL_TRUE@ $(am__append_32) $(am__append_35) \ + @FC_IS_INTEL_TRUE@ $(am__append_37) +@@ -391,7 +391,7 @@ + @FC_IS_INTEL_TRUE@AM_FFLAGS = -assume realloc_lhs -traceback \ + @FC_IS_INTEL_TRUE@ -heap-arrays -warn all -warn \ + @FC_IS_INTEL_TRUE@ notruncated_source -gen-interfaces -fpe0 \ +-@FC_IS_INTEL_TRUE@ -standard-semantics -assume nostd_value \ ++@FC_IS_INTEL_TRUE@ -standard-semantics \ + @FC_IS_INTEL_TRUE@ -init=snan $(am__append_28) $(am__append_31) \ + @FC_IS_INTEL_TRUE@ $(am__append_33) $(am__append_34) \ + @FC_IS_INTEL_TRUE@ $(am__append_38) diff --git a/easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb b/easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e2cb4b55ad24b604f0c6f19a21c989c7f69861a4 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb @@ -0,0 +1,25 @@ +name = 'DB' +version = '2.7.7' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://download.oracle.com/berkeley-db'] +sources = [SOURCELOWER_TAR_GZ] + +modextrapaths = { + 'PATH': ["BerkeleyDB/bin"], + 'CPATH': ["BerkeleyDB/include"], + 'LD_LIBRARY_PATH': ["BerkeleyDB/lib"], + 'LIBRARY_PATH': ["BerkeleyDB/lib"], +} + +sanity_check_paths = { + 'files': ["BerkeleyDB/include/db.h", "BerkeleyDB/include/db_cxx.h", "BerkeleyDB/lib/libdb.a"], + 'dirs': ["BerkeleyDB/bin"], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f5b3296ba09dddbb5854d868bf698cd78c95d7ab --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '4.7.25' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://download.oracle.com/berkeley-db'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["include/db.h", "include/db_cxx.h", "lib/libdb.a", "lib/libdb.so"], + 'dirs': ["bin"], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb b/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a459174775f1b4e448f4eac3adf50a55d5aa207 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '4.7.25' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = ['http://download.oracle.com/berkeley-db'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["include/db.h", "include/db_cxx.h", "lib/libdb.a", "lib/libdb.so"], + 'dirs': ["bin"], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb b/easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..ff79f374e96eabbe69c393fd4a055f557df0919b --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '6.0.20' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, requires registration +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["include/db.h"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..318f3d639e57bb6c47142b11c6b5c0d64a84dae1 --- /dev/null +++ b/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'DBD-SQLite' +version = '1.42' + +homepage = 'http://search.cpan.org/~ishigaki/DBD-SQLite-1.42/' +description = """Perl binding for SQLite""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("SQLite", "3.8.6"), +] + + +options = {'modulename': 'DBD::SQLite'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..2bcf9d9a0e32612b85e7acc0539f55194dba74f3 --- /dev/null +++ b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,25 @@ +easyblock = 'PerlModule' + +name = 'DBD-mysql' +version = '4.028' + +homepage = 'http://search.cpan.org/~capttofu/DBD-mysql-4.028/' +description = """Perl binding for MySQL""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cpan.metacpan.org/authors/id/C/CA/CAPTTOFU/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("MySQL", "5.6.20", "-clientonly"), +] + +options = {'modulename': 'DBD::mysql'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3aa72fb22ae0741c84227fed652066e607ed9638 --- /dev/null +++ b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb @@ -0,0 +1,24 @@ +easyblock = 'PerlModule' + +name = 'DB_File' +version = '1.831' + +homepage = 'http://perldoc.perl.org/DB_File.html' +description = """Perl5 access to Berkeley DB version 1.x.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('DB', '2.7.7')] + +perl = 'Perl' +perlver = '5.18.2' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..3636f4ea5c1a6f02d1dc9427e229dc5b3e68d23b --- /dev/null +++ b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb @@ -0,0 +1,24 @@ +easyblock = 'PerlModule' + +name = 'DB_File' +version = '1.831' + +homepage = 'http://perldoc.perl.org/DB_File.html' +description = """Perl5 access to Berkeley DB version 1.x.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('DB', '2.7.7')] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f6fd6246c403ce2d10745ddcc4f8a1c7ccf870b6 --- /dev/null +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'DIALIGN-TX' +version = '1.0.2' + +homepage = 'http://dialign-tx.gobics.de/' +description = """ greedy and progressive approaches for segment-based + multiple sequence alignment """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True} + +source_urls = [homepage] +sources = ['%(name)s_%(version)s.tar.gz'] + +start_dir = 'source' + +# These are the hardcoded CPPFLAGS in the makefile: +# CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse -mmmx +# +# We overwrite CPPFLAGS in the makefile with easybuild toolchainopts which will be something like +# CPPFLAGS=-O3 -funroll-loops -march=native" +buildopts = 'CPPFLAGS="$CFLAGS"' + +files_to_copy = [(['dialign-tx'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/dialign-tx'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb new file mode 100644 index 0000000000000000000000000000000000000000..76c48d1e81ff8cb00233694740bacd3c7bfb69eb --- /dev/null +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2015 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'Binary' + +name = 'DSRC' +version = '2.0rc' +versionsuffix = '-linux-64-bit' + +homepage = 'http://sun.aei.polsl.pl/dsrc' +description = """DNA Sequence Reads Compression is an application designed for compression of data files + containing reads from DNA sequencing in FASTQ format. The amount of such files can be huge, e.g., a few + (or tens) of gigabytes, so a need for a robust data compression tool is clear. Usually universal compression + programs like gzip or bzip2 are used for this purpose, but it is obvious that a specialized tool can work better.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%(namelower)s'] +source_urls = ['http://sun.aei.polsl.pl/dsrc/download/%(version)s/'] +checksums = [('md5', 'bdc40a96e33411cd4cdbe2b58ae285b7')] + +sanity_check_paths = { + 'files': ['dsrc'], + 'dirs': [] +} + +modextrapaths = {'PATH': ''} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index 5c1247c5f62eeb46c9af6f63ab9714eeb7d4ff48..cfed427bb703e95c7928f3af2d1d08401843f529 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Diffutils' version = '3.2' diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 182d829f0f4dd6590589d8bad21b1617928e0d35..9021d61ff682579268d991bbc57f464d881455b5 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Diffutils' version = '3.2' diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..03dd2d88f6baf62d75c9f51b3c47a4d4716264f5 --- /dev/null +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Diffutils' +version = '3.3' + +homepage = 'http://www.gnu.org/software/diffutils/diffutils.html' +description = """Diffutils: GNU diff utilities - find the differences between files""" + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sanity_check_paths = { + 'files': ['bin/cmp', 'bin/diff', 'bin/diff3', 'bin/sdiff'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..14b0fa758317b025eb7e901f723f309c783d7c27 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.3.1' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.37'), + ('Bison', '2.7'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.5-intel-2014b.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.5-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5e793c0927f5fa90a72f6f48318039cf29411745 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.5-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.5' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, +IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +dependencies = [ + ('flex', '2.5.37'), + ('Bison', '2.5'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2014b.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d4e12f60a1a2fcc378f3264e96d76c8518bdc8ad --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.7' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc83824bc935e9926a2a984d1a8b0a07ff561e83 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.7' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.8-ictce-7.1.2.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.8-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..c71563675ec90f8b835d4a59a3cfde25be96f273 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.8-ictce-7.1.2.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.8' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.8-intel-2014b.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..956232f2e89378bec991cf202c07e14892d24895 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.8-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.8' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..1cb88eb2d08dd182a8719c121aa85ff47beeb8e9 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.9.1' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.3'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..6294e116566fcea740cd84d4e6216c283620b368 --- /dev/null +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Authors:: Inge Gutheil , Alan O'Cais +# License:: MIT/GPL +# $Id$ +# +## + +easyblock = 'ConfigureMake' + +name = 'ELPA' +version = '2013.11' + +homepage = 'http://elpa.rzg.mpg.de' +description = """Eigenvalue SoLvers for Petaflop-Applications .""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'optarch': True, 'usempi': True} + +# download at http://elpa.rzg.mpg.de/elpa-tar-archive +sources = ['%(name)s_%(version)s.006_20140312.tar.gz'] + +patches = ['ELPA_fix-tests.patch'] + +configopts = '--with-generic-simple --disable-shared FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" LIBS="$LIBSCALAPACK"' +buildopts = ' V=1 LIBS="$LIBSCALAPACK"' +start_dir = '%(name)s_%(version)s' + +builddependencies = [('Automake', '1.13.4')] + +parallel = 1 + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c080908b4295b548ed7a1f54a5726881d50b6f6f --- /dev/null +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Authors:: Inge Gutheil , Alan O'Cais +# License:: MIT/GPL +# $Id$ +# +## + +easyblock = 'ConfigureMake' + +name = 'ELPA' +version = '2013.11' + +homepage = 'http://elpa.rzg.mpg.de' +description = """Eigenvalue SoLvers for Petaflop-Applications .""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'usempi': True} + +# download at http://elpa.rzg.mpg.de/elpa-tar-archive +sources = ['%(name)s_%(version)s.006_20140312.tar.gz'] + +patches = ['ELPA_fix-tests.patch'] + +configopts = '--with-generic-simple --disable-shared FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" LIBS="$LIBSCALAPACK"' +buildopts = ' V=1 LIBS="$LIBSCALAPACK"' +start_dir = '%(name)s_%(version)s' + +builddependencies = [('Automake', '1.13.4')] + +parallel = 1 + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/ELPA/ELPA_fix-tests.patch b/easybuild/easyconfigs/e/ELPA/ELPA_fix-tests.patch new file mode 100644 index 0000000000000000000000000000000000000000..18fa2236a7106d48e0ae613e033fef4b0ed7446e --- /dev/null +++ b/easybuild/easyconfigs/e/ELPA/ELPA_fix-tests.patch @@ -0,0 +1,44 @@ +diff -ru ELPA_2013.11.orig/test/test_complex2.F90 ELPA_2013.11/test/test_complex2.F90 +--- ELPA_2013.11.orig/test/test_complex2.F90 2014-01-29 09:29:35.544248000 +0100 ++++ ELPA_2013.11/test/test_complex2.F90 2014-02-21 13:48:09.662072163 +0100 +@@ -79,6 +79,7 @@ + integer i, mpierr, my_blacs_ctxt, sc_desc(9), info, nprow, npcol + + integer, external :: numroc ++ integer :: iargc + + real*8 err, errmax + real*8, allocatable :: ev(:), xr(:,:) +diff -ru ELPA_2013.11.orig/test/test_complex.F90 ELPA_2013.11/test/test_complex.F90 +--- ELPA_2013.11.orig/test/test_complex.F90 2014-01-29 09:29:35.534699000 +0100 ++++ ELPA_2013.11/test/test_complex.F90 2014-02-21 13:48:33.118418351 +0100 +@@ -78,6 +78,7 @@ + integer i, mpierr, my_blacs_ctxt, sc_desc(9), info, nprow, npcol + + integer, external :: numroc ++ integer :: iargc + + real*8 err, errmax + real*8, allocatable :: ev(:), xr(:,:) +diff -ru ELPA_2013.11.orig/test/test_real2.F90 ELPA_2013.11/test/test_real2.F90 +--- ELPA_2013.11.orig/test/test_real2.F90 2014-01-29 09:29:35.573319000 +0100 ++++ ELPA_2013.11/test/test_real2.F90 2014-02-21 13:48:51.240387595 +0100 +@@ -80,6 +80,7 @@ + integer i, mpierr, my_blacs_ctxt, sc_desc(9), info, nprow, npcol + + integer, external :: numroc ++ integer :: iargc + + real*8 err, errmax + real*8, allocatable :: a(:,:), z(:,:), tmp1(:,:), tmp2(:,:), as(:,:), ev(:) +diff -ru ELPA_2013.11.orig/test/test_real.F90 ELPA_2013.11/test/test_real.F90 +--- ELPA_2013.11.orig/test/test_real.F90 2014-01-29 09:29:35.563829000 +0100 ++++ ELPA_2013.11/test/test_real.F90 2014-02-21 13:49:05.466094157 +0100 +@@ -79,6 +79,7 @@ + integer i, mpierr, my_blacs_ctxt, sc_desc(9), info, nprow, npcol + + integer, external :: numroc ++ integer :: iargc + + real*8 err, errmax + real*8, allocatable :: a(:,:), z(:,:), tmp1(:,:), tmp2(:,:), as(:,:), ev(:) diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..85c2d23a0ee5236ded07489481064b30cdb10064 --- /dev/null +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'ELPH' +version = '1.0.1' + +homepage = 'http://ccb.jhu.edu/software/ELPH/index.shtml' +description = """ ELPH is a general-purpose Gibbs sampler for finding motifs in a set + of DNA or protein sequences. The program takes as input a set containing anywhere from + a few dozen to thousands of sequences, and searches through them for the most common motif, + assuming that each sequence contains one copy of the motif. We have used ELPH to find + patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs). """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://ccb.jhu.edu/software/ELPH/'] +sources = [SOURCE_TAR_GZ] + +start_dir = 'sources' + +buildopts = ' CC="$CC"' + +parallel = 1 + +files_to_copy = [ (["elph"], "bin"), "COPYRIGHT", "LICENSE", "Readme.ELPH", "VERSION" ] + +sanity_check_paths = { + 'files': ["bin/elph"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..a6057c15fd1cf2c97d68c5020ba9f49fe4a30c4e --- /dev/null +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'ELPH' +version = '1.0.1' + +homepage = 'http://ccb.jhu.edu/software/ELPH/index.shtml' +description = """ ELPH is a general-purpose Gibbs sampler for finding motifs in a set + of DNA or protein sequences. The program takes as input a set containing anywhere from + a few dozen to thousands of sequences, and searches through them for the most common motif, + assuming that each sequence contains one copy of the motif. We have used ELPH to find + patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs). """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +source_urls = ['http://ccb.jhu.edu/software/ELPH/'] +sources = [SOURCE_TAR_GZ] + +start_dir = 'sources' + +buildopts = ' CC="$CC"' + +parallel = 1 + +files_to_copy = [ (["elph"], "bin"), "COPYRIGHT", "LICENSE", "Readme.ELPH", "VERSION" ] + +sanity_check_paths = { + 'files': ["bin/elph"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index ad74f64ba5c2b25763db8c87185b73262a6f82ef..740d133cb44dc3821265259e4343b4d817a259df 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index e6b984361de765fd62f90ee7a73eb45a2d46f341..098e55a84ecc6aaa913933ae178604aa087da011 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index a78c94ff9ed3871af0fbab74f86eaa3319817882..3298a3a17d051c0d2620272f12691f3bafeb5f08 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index dba8bb5006c8850083dc5681693f753fefdce136..1dbae1bd2fb07c91feed4eab89f138242dda142d 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index d309d40cd6b029188da191c5123e5fe8bedc21fa..de907a4a959db057b0988a38feba97f51f4914ac 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -1,8 +1,10 @@ -# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +easyblock = 'ConfigureMake' + name = 'EMBOSS' version = '6.5.7' @@ -16,6 +18,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/'] sources = [SOURCE_TAR_GZ] +patches = ['EMBOSS_disable-embossupdate.patch'] + dependencies = [('libharu', '2.2.0')] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index c355837e99f240f1e15b85fd29e904baf1c5c932..d78f1f7be590e4515cfb4df08f0b192f23a8a4ad 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -1,8 +1,10 @@ -# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +easyblock = 'ConfigureMake' + name = 'EMBOSS' version = '6.5.7' @@ -16,6 +18,8 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/'] sources = [SOURCE_TAR_GZ] +patches = ['EMBOSS_disable-embossupdate.patch'] + dependencies = [('libharu', '2.2.0')] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index f3398b3949c2465c7dc61a0ef6598a46f3f6ec98..21a40b02e9d8364b8f3bbd9b291b55068b65a7cb 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -1,8 +1,10 @@ -# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +easyblock = 'ConfigureMake' + name = 'EMBOSS' version = '6.5.7' @@ -16,6 +18,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/'] sources = [SOURCE_TAR_GZ] +patches = ['EMBOSS_disable-embossupdate.patch'] + dependencies = [('libharu', '2.2.0')] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS_disable-embossupdate.patch b/easybuild/easyconfigs/e/EMBOSS/EMBOSS_disable-embossupdate.patch new file mode 100644 index 0000000000000000000000000000000000000000..37fa8393aa151102ce8f2424caaa4925b2f97b4a --- /dev/null +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS_disable-embossupdate.patch @@ -0,0 +1,19 @@ +--- EMBOSS-6.5.7/Makefile.in.orig 2012-07-24 16:11:48.000000000 +0200 ++++ EMBOSS-6.5.7/Makefile.in 2014-07-09 14:35:41.606305045 +0200 +@@ -791,7 +791,7 @@ + tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) + + install-exec-hook: +- $(bindir)/embossupdate ++ echo "Skipping $(bindir)/embossupdate" + + # Tell versions [3.59,3.63) of GNU make to not export all variables. + # Otherwise a system limit (for SysV at least) may be exceeded. +--- EMBOSS-6.5.7/Makefile.am.orig 2012-07-22 13:16:46.000000000 +0200 ++++ EMBOSS-6.5.7/Makefile.am 2014-07-09 14:35:45.946399118 +0200 +@@ -34,4 +34,4 @@ + tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) + + install-exec-hook: +- $(bindir)/embossupdate ++ echo "Skipping $(bindir)/embossupdate" diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index 59bfbaf8a1d071062f8813dffaf77cb52250e063..dac20cc956ac2a5def6d4c864fffb7620d68c0a8 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index d0d1158f58359241e176edda4b8580987732b296..fbac4052147ed3f9d7722304830f6a86302e8d0d 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index c7461b015ae9cc0a8b866a388a896d852ce7a881..39f5667ba5c2a4dd05d5dfedaf66f89e1b0197ee 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index 1fc66692629c71d6ad4b9ccd21e7bef6359fe2cd..79d7c269620ff525a7e05b98545ab8baa6970402 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index 66a5edd323516c7ea68bd2887ae74e511317b844..0d5009ded455c4503119afce6f6110236c5e4b27 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index 576995bfd59af0ee5798f52ad23682b79111b423..638f30315a53c9f49db52db08892ac51e86b9357 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index bef6847c1d66eca8b3eaa19189cc28dd09013a31..890278722c6024bf7fa69c42c78f6a73355b32ab 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index 2f8b996a5290a225069a626c11b17f2351e740c7..dd73e5835e9df0289a879d4d9fab337e2916cb38 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e4ebd91d1b8db3aa041de6d98accce61522e9c95 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '1.11.0' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..798cd20488a430f475fe59334a916bce6fb5e888 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '1.11.1' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b7092a63e95e6451641fc54007bd7482f451f570 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '1.12.0' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..f8cd7d18f270b1e41b08bf71cfabae6b2a9ccdff --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '1.12.1' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1b3cf50b1a0bf8abe53940824e4df12b5d366b98 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '1.13.0' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8ceec790c8abe8ec71acff450e1cb0cddec23ec7 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '1.14.0' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cfc44c499c7d7fb5cc08fc1820eafd4f26af942e --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.15.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..0f2a68be4b340a6007fc304bde1ca1deee865bab --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.15.1" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d44b604d2779e2427af50d3f7ce716f977701221 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.15.2" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..248cce692e371fbced98b5b20d2acea238623899 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.16.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..83ed95495c269b2085752878c59c84ba94c3d578 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.16.1" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb index 2b998a05e253fe6a330e2f679334f42197c0e09e..57fad2e4e7e074765592ee1ea27458b10c134ba5 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb index 958a558f7da35a69b1866d65f921d94f7e9ee2da..04a48d1f609f90ea81f460110119dba6c8c4ddb1 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb index 1b2199f7add3ba45a6bb9810654c7fc14fa22959..34c32694d7333835906879dde48afd1176033b20 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb index 3c1a34a84a010e1c25a3afba45c9aa31b2b74647..eda95916d09d66092fd23b490b1db6ec88872bc8 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb index 5eb47f9b01d60406d5ded14d80b89d9b75276e07..ab4f378feb1ea3191188fd4b8b6a83d12209bbac 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb index 41829c8d56d5f65c7fe30d8260d044d1555b7466..92042e0a82004dd369dfe3921d2de6fe67f1ad38 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb index da3a06f00f3318e41dde819cdf5e819a6d1c0510..5e8553cde74c6c267527a535cb144be11d2a2eb2 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb index 0d4662d6931e63896f44a1230a951eeeba591b2e..bf8140941835814debfcfe826f8d272ab1e31dfb 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb index 5a9c5c11ad87d09c0aafbea282ffa624b229d623..934d581d377f9514463314da63fd12775c751977 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..890a8a48390f86db428dfd7c0f2fef71d071e4cd --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Eigen' +version = '3.2.0' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..024205f8b6ba005855a3e96cb6518728ad49a7a6 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Eigen' +version = '3.2.2' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [BITBUCKET_SOURCE] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..bca769f27d8d7115a6d5a9f6c6ae000a9b16daaa --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Eigen' +version = '3.2.2' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ab03a385a5b063bcadbee86c2d3a365ce269f129 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Eigen' +version = '3.2.2' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d9ce74d1cfac69e2491f7f37c867760cb49b4609 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb @@ -0,0 +1,14 @@ +name = 'Eigen' +version = '3.2.3' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..68f945c239d3605a84ecfe6c273e6b0a6e0f29c7 --- /dev/null +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Emacs' +version = '24.3' +versionsuffix = '-bare' + +homepage = 'http://www.gnu.org/software/emacs/' +description = """GNU Emacs is an extensible, customizable text editor—and more. + At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language + with extensions to support text editing.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} +toolchainopts = {} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '--without-all --without-x ' + +sanity_check_paths = { + 'files': ["bin/emacs", "bin/emacs-%(version)s"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..cb835bb8cddcb990337f5cc6817993c45f4ca103 --- /dev/null +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'Emacs' +version = '24.3' + +homepage = 'http://www.gnu.org/software/emacs/' +description = """GNU Emacs is an extensible, customizable text editor—and more. + At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language + with extensions to support text editing.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} +toolchainopts = {} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '--with-gif=no --with-tiff=no ' + +sanity_check_paths = { + 'files': ["bin/emacs", "bin/emacs-%(version)s", "bin/emacsclient", "bin/etags"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..ceb01e01dd61300a69e15b922d8b6cdf2d83599a --- /dev/null +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'Emacs' +version = '24.4' + +homepage = 'http://www.gnu.org/software/emacs/' +description = """GNU Emacs is an extensible, customizable text editor—and more. + At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language + with extensions to support text editing.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '--with-gif=no --with-tiff=no --with-x-toolkit=no --with-xpm=no ' + +sanity_check_paths = { + 'files': ["bin/emacs", "bin/emacs-%(version)s", "bin/emacsclient", "bin/etags"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb index 84aa14f3cbec3b33c323baabd20dcc6577c68b90..4e009be5c9a156fe8a181b700d988dc5d7cf9a88 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ErlangOTP' version = 'R16B02' versionsuffix = "-no-Java" diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb index 14f196cbec17dd18670ac1b2142725621fe586ab..9f3aa94ef1c682f9d0155543184bbba1ee044b24 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ErlangOTP' version = 'R16B02' diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index 6f89ce5300b503c31d65a3db4bf4eb14c8dd6e92..1e6432cb6d75daee29c3aa75e5894f6d0f5820dc 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = "ErlangOTP" version = "R16B02" versionsuffix = "-no-Java" diff --git a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb6680d2d69afb75d0f4d3ba41252280cc312eb0 --- /dev/null +++ b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb @@ -0,0 +1,42 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "CMakeMake" + +name = "eXpress" +version = "1.5.1" + +homepage = 'http://bio.math.berkeley.edu/eXpress/index.html' +description = """ eXpress is a streaming tool for quantifying the abundances of a set + of target sequences from sampled subsequences. Example applications include transcript-level + RNA-Seq quantification, allele-specific/haplotype expression analysis (from RNA-Seq), + transcription factor binding quantification in ChIP-Seq, and analysis of metagenomic data.""" + +toolchain = {'version': '1.4.10', 'name': 'goolf'} + +sources = ['%(namelower)s-%(version)s-src.tgz'] +source_urls = ['http://bio.math.berkeley.edu/eXpress/downloads/%(namelower)s-%(version)s/'] + +builddependencies = [ + ('CMake', '2.8.12'), + ('BamTools', '2.2.3') +] + +dependencies = [ + ('Boost', '1.51.0'), # Boost-1.53.0 not working? + ('gperftools', '2.1'), + ('protobuf', '2.5.0') +] + +separate_build_dir = True + +patches = ['eXpress-1.5.1-libbamtools.patch'] + +sanity_check_paths = { + 'files': ["bin/express"], + 'dirs': [""] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-libbamtools.patch b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-libbamtools.patch new file mode 100644 index 0000000000000000000000000000000000000000..4c807adfecbe31f9368bab655f44ed0d68814112 --- /dev/null +++ b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-libbamtools.patch @@ -0,0 +1,11 @@ +--- express-1.5.1-src.orig/src/CMakeLists.txt 2013-12-08 20:09:18.000000000 +0100 ++++ express-1.5.1-src/src/CMakeLists.txt 2014-03-27 23:09:17.014311307 +0100 +@@ -16,7 +16,7 @@ + if(WIN32) + set(LIBRARIES ${LIBRARIES} "${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.lib" "${CMAKE_CURRENT_SOURCE_DIR}/../win_build/zlibd.lib") + else(WIN32) +- set(LIBRARIES ${LIBRARIES} "${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a" "pthread") ++ set(LIBRARIES ${LIBRARIES} "$ENV{EBROOTBAMTOOLS}/lib/libbamtools.a" "pthread") + endif(WIN32) + + if (PROTOBUF_FOUND) diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb index 6cb5d154dff2a97000be16c67d36c4ec66e0aea4..361605cda983330a587321e36f1860aa3822bf5e 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ed' version = '1.9' diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb index e2bb71d26bc7fadc4dc224abd0eb8925b105fa07..babb529111d7fd3ffef11927abdadfed0f1bedd6 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ed' version = '1.9' diff --git a/easybuild/easyconfigs/e/evmix/evmix-2.1-intel-2014b-R-3.1.1.eb b/easybuild/easyconfigs/e/evmix/evmix-2.1-intel-2014b-R-3.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffb121f54612ab3ad498fe72cefe713817fbc84f --- /dev/null +++ b/easybuild/easyconfigs/e/evmix/evmix-2.1-intel-2014b-R-3.1.1.eb @@ -0,0 +1,27 @@ +easyblock = 'RPackage' + +name = 'evmix' +version = '2.1' + +homepage = 'http://cran.r-project.org/web/packages/evmix' +description = """evmix: Extreme Value Mixture Modelling, + Threshold Estimation and Boundary Corrected Kernel Density Estimation""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/evmix/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.1.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ('gsl', '1.9-10', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/evmix/evmix-2.3-intel-2014b-R-3.1.1.eb b/easybuild/easyconfigs/e/evmix/evmix-2.3-intel-2014b-R-3.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..ee1750e53d0456918ad49524a6bb2cf7e6b2a238 --- /dev/null +++ b/easybuild/easyconfigs/e/evmix/evmix-2.3-intel-2014b-R-3.1.1.eb @@ -0,0 +1,27 @@ +easyblock = 'RPackage' + +name = 'evmix' +version = '2.3' + +homepage = 'http://cran.r-project.org/web/packages/evmix' +description = """evmix: Extreme Value Mixture Modelling, + Threshold Estimation and Boundary Corrected Kernel Density Estimation""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/evmix/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.1.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ('gsl', '1.9-10', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..e10b56409eb58cb594601b968ed5d0e9f9de4aca --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb index db1a11c235a2133c683e351a378b3bf93e26a474..32e37ffc4edf4d72fa8f6c468e9f4ebea6bad521 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb index 885fb62b4e4b7e758b7cdf286848f849066bb91e..a5482a0de8196a47ae468e85733224382bafd65a 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb index 2657f96b00037479324c68c4d0aecfb80ae480ee..77192999ec000a3356969ccad3c65b6f3190acc1 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb index 4490c6ffcf463b3aa528e46ef417b336ae3019fb..7548d8a26401c3067f1d3a8478e28bd698bb2f5d 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..35e32ef7da9f15d30642fb37534fd654fa235ef1 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application +registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1381b2b8cd48ef5fe54b880d02afde4726c98e18 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb index 34675b49bb21df1686e5908b0d03951d2ff52c71..1df1944fe7205fb9f68ac4d22fea7e94b3604df6 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb index 81d33a823228261e0eab7da96810d67d5eb962fe..23118879c5adbc9d177d0caf8986b51d151b8150 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb index 826a4829cc2e104df982e8f9b53e38f697dffa1a..207aea5fd5a68b8b639e9b4d1e1060170cec2792 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb index 9b38956344fad33215f71d5b8c1a83ae6ec72632..ccfb1c69db5457dbbf23c5190eca645ff0aaba96 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb index f638ff19199d0bf6eff1aee82e4923ca47aa0db4..3d951c24c9c6e56dc1565df78607b33ae5390ca7 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb index e70739f7fe18d8630e96e0baae67ebdfa20b1881..6fe54d636de4a4380d9260357a9e96ad94ff56d0 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb index 000716b57ea2a522f0bda13074b4167bf0d5217d..f59fe3f2c07c9fd46b6756271c04dd68ef9744ac 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb index 40a669ff0fbf76ba391573b76b798e861099b5a4..77172614002c45cb32b77872a30d89e91a4698da 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..45acf6dd3e2061e3d4771dbf4a456c1609d570d8 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f76c746c5e41e388b265ddd75939aafcec87fad5 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb index ca9c647c8844b542378a3cb45a93513f5d54c3d2..f7530e1017df2bbc7944b4a9fab649b370f1699b 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://faculty.virginia.edu/wrpearson/fasta/fasta36'] sources = [SOURCELOWER_TAR_GZ] -makeopts = '-C ./src -f ../make/Makefile.linux_sse2 all' +buildopts = '-C ./src -f ../make/Makefile.linux_sse2 all' files_to_copy = ["bin", "conf", "data", "doc", "FASTA_LIST", "misc", "README", "seq", "sql", "test"] diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb index a33d8d88b53b4a5cc1baa79a42515ca6068e560f..8f618661801a697f9e7eb70fc3e864647d5a54b5 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://faculty.virginia.edu/wrpearson/fasta/fasta36'] sources = [SOURCELOWER_TAR_GZ] -makeopts = '-C ./src -f ../make/Makefile.linux_sse2 all' +buildopts = '-C ./src -f ../make/Makefile.linux_sse2 all' files_to_copy = ["bin", "conf", "data", "doc", "FASTA_LIST", "misc", "README", "seq", "sql", "test"] diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index d0ed8682f9683d0ef23ac016ea4b8b70976bc5a5..ce824a5e5672c3ea52bc3bc3246159ab0b2adec7 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index f039b4fbab401e3ee98a9c435b5bb74cb80a2dc3..d68850c2976f781e78d0d3792f8f1ce696bca366 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index e858fe9af8abd90946d89c4746640fda1ae00498..c0fdac7c353b30530be2b3b72871964c96c7e302 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 8352cf1a1fde69ca258a2ef3b4ef8540efb8ea4c..f7fa06667c04b2374bd73050f6df140db4c51873 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index d529b00f9604b4202d064252caf5e7ce6a74d97a..96c112929039c24581b53fe6668fdcb843b9b354 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.14' diff --git a/easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb b/easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb new file mode 100644 index 0000000000000000000000000000000000000000..ddfd8fc85dfd1e87e3c5c2bb1ef376ec3e9e56c3 --- /dev/null +++ b/easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb @@ -0,0 +1,14 @@ +name = 'FDTD_Solutions' +version = '8.11.337' + +homepage = 'http://www.lumerical.com/tcad-products/fdtd/' +description = """High performance FDTD-method Maxwell solver for the design, analysis and optimization +of nanophotonic devices, processes and materials.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCE_TAR_GZ] + +patches = ['FDTD_install-script.patch'] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb index c344270319dace2a5c50df60340036c3c0119e6b..8ef1d25ea55986366edacc5792ccd5eaa6db6eea 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb index b53f0f436c5182b2f40e0efc547dbecbd56521be..207690907c36140eecd03841fc8d3d3a2c1096bb 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb index ac0eb40ec09bbc2583075463c7b2433db5341b88..27849ede43f1d48b08e69fd0cdf5684767e14b7e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..a551eedc1d1362dcd3eebbc69e01db44dcf6b981 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '2.1.5' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-shared --enable-type-prefix --enable-threads --with-pic" + +configopts = [ + common_configopts + " --enable-float --enable-mpi", + common_configopts + " --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['include/%sfftw%s.h' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + + ['lib/lib%sfftw%s.a' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + + ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb index ec8397b735c541d292defe88b5ac4054b62444bc..df746888b87a52a5be779e373d3deeeec920b226 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.1' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb index 75ad8f64fd8ee34b79275737d6c5f727218b9934..47b8369c49b9291fdb4e39578115b7e76321392c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.1' @@ -11,9 +13,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb index a882b723f5e342c4374279eec6c00de73a7f4161..8a16d17d967d39c70707b8b764b09e97721eddde 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.1' @@ -11,9 +13,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb index b2c5ddce15230479ad115add5747938acef5fc5e..f3605b72054e5cb912c6d1dbc0a659ace00e4940 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.2' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb index d7fffd3436049ce604068575d691e1b1e23d9154..8ff5975e69bbcebe69bf984bdb227247a0514616 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,8 +13,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb index 2806b10caa8f0f6b1543eba9de34d91a5234f1c3..f61ebb9aacdad5a7db8ab44a8fbb45943db1e64c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,8 +13,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb index df9fe7a076522f11e2e2bb7752dc9016a3c065a6..4129cff18b4ee9be483610c171f96cd28f665ebe 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,8 +13,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb index 5697f5c11cc9927531650e6922990cf71ab5cf1e..d57604c1f8151b873d8d41362bf0cabee10a7995 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,8 +13,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..34bdcce1b8be37ef6bd0664d7c9c418eafdb5975 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.3' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gmpich', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb index 5f70b49f30725c6c1ef2252411d584d1b530444f..dbbb079aaf6b50d3f5c9a9aad9b9365705bb3258 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb index 039d1e12b3a9aa01b099f3b9da7589fb82f1ef01..7c08b5de116fcb5c696778d2d704047c1aa55580 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -25,8 +27,8 @@ sanity_check_paths = { 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb index 24f84008f2a40d6ef89f6dfb89f449431da00c84..b7323c4cfc305de347b4b27c34db20e446d0906a 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -25,8 +27,8 @@ sanity_check_paths = { 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..b4a9a90a0141c0d7faec71f1a95e0c156f1377ed --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.3' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.4.10-no-OFED'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb index 06b0c2e2e13d59052f9b6af8b454968aeaf8849f..bc93d09c52e675559fe8ed5f5e3b7ada33b0514f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb index 8d3ca7d8c59cb3a9c4cd04f388324b63cedf2623..6ce64fb09e1ca179198f7c46522bdc0b097c9504 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb index 1d53f20f3aa6edbf7f1823ec69945927e2e0f9bf..a07a8a5b7a5c19e9f1874fd97dd9a57576cec4d6 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb index b1f58241552a9088827c7e502bf8af6cfbd0ff3b..9273c85cd6cd9628ba6d1c8fdebb7416e5d241fe 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb index e3193217ca3c6ea56650bc6ed38a162a7520d24d..23271fb82e149d002178af3bf884255d5c36b0a9 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb index 6e63456a824ad6199bd3225c6285715777ecff09..847312fb86b5d3d8520470c53cfcfbc4de5bdce4 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' @@ -13,9 +15,17 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --enable-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb index 24c1373e5bae8d4c752e019ed939fd0656845297..0bde45211c008e0e4ea3e4eaa212ae09709e3835 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,9 +13,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb index 767ab63f0ebb50657034f9f6943756dbcfef6b28..8d6deb8033452fad932cd5e5f8919a9d87f5249d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' @@ -13,9 +15,17 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --with-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} -moduleclass = 'lib' +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb index 0a22b7c289070b90f857a28170ce05073eccc72f..8b154894b8051c1d96826ed837ee3dd8fcafaff4 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,9 +13,22 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -configopts = "--enable-sse2" +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] -# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --with-openmp --with-pic --enable-mpi" +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} -moduleclass = 'lib' +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb index 443ecd1135a960e402b6868f325407a3867bb0d8..4e798279db2974ac15904158c56b42d489a08df0 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' @@ -13,9 +15,17 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --enable-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb index 31042109a4951350f56ce10ad1d8080d8e9a21b1..223503bbeb7e19f1ca3ee134e091f4d1d84e618b 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,9 +13,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb index 0ae947ce7f119cb6ce29e08f2164d3252cfb7cfa..caca8b42568996ce582ef52fd35cbf5fdf14353f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,9 +13,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb index c738f3c6ce6bbcbd8ae5474a29f9f422e8a110db..e545bdb073313f53afe77f375c7d96d8c20e7dc7 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -14,9 +16,10 @@ source_urls = [homepage] # FFTW guesses OpenMP flag for Intel C compiler (v11.1.075) wrong, so correct it. preconfigopts = "OPENMP_CFLAGS='-openmp' " -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -27,8 +30,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb index 0d7133c1074c9a5b9d6e45e8001de08776aef2c2..30678616ef9b60f536dbda0980f2816e8d743af0 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' @@ -11,9 +13,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb index dc155cb0b89b74814b2268cda6dcea870d1829bf..cfa438bf8f26c45cb6b50ea87b2770fad6823453 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' @@ -13,11 +15,19 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --enable-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" preconfigopts = 'OMPI_MPICC=icc ' +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..7a9d4c279e1cf7f944e8081f6971de24fec2e3e5 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gmvapich2', 'version': '1.7.12'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..128daff670844540be0503e56343b05da557a4a8 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.5.14-no-OFED'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..31bdfdd9569dffa5ca7179028779698f9348a016 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.7.20.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..716715a07e81ef94c096baf58f93eedec4ddf88e --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.7.20.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.7.20'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..777e41c53dd8007b3b6c91cd154a153299178dd7 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3967193a7cac507fc82cf4671282ef9f6684c550 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb similarity index 92% rename from easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb rename to easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb index 260a090f9c88b0f950ea303a9e093c78f2a936f4..cb01772a4f89815dd80dabaefe658db6d327daed 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb @@ -1,11 +1,12 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' -version = '3.3.3' +version = '3.3.4' homepage = 'http://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" - -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gpsmpi', 'version': '2014.12'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] @@ -20,6 +21,8 @@ configopts = [ common_configopts + " --enable-sse2 --enable-mpi", # default as last ] + + sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', @@ -30,3 +33,4 @@ sanity_check_paths = { } moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..a0dcf3f5cc95c64e323e13f63cb42dfaf3c4cc94 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..aff8516503ce01ca9ff6360c964b94fbbbb638a6 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1cb2cf1b40fbedd625eed0fa28c38b19170f61ba --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d1b0eda5c987b4b9982fddde90146090f5a526d --- /dev/null +++ b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,34 @@ +easyblock = "PythonPackage" + +name = 'FIAT' +version = '1.1' + +homepage = 'https://launchpad.net/fiat' +description = """The FInite element Automatic Tabulator FIAT supports generation of arbitrary order +instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating +arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/'] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.8' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('ScientificPython', '2.8.1', versionsuffix), +] + +options = {'modulename': name} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/FIAT' % pythonshortversion], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0bc1badf5f7aa41a88cb5baa7d528f5f340e1bc2 --- /dev/null +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb @@ -0,0 +1,30 @@ +# +# author: Dina Mahmoud Ibrahim ( Cairo University ) +# +easyblock = 'ConfigureMake' + +name = 'FLTK' +version = '1.3.2' + +homepage = 'http://www.fltk.org' +description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, + and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL + and its built-in GLUT emulation.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = ['%(namelower)s-%(version)s-source.tar.gz'] +source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('Tk', '8.5.12'), +] + +sanity_check_paths = { + 'files': ['bin/fltk-config','bin/fluid'], + 'dirs': ['lib'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb index 434e42049647624095b07094c82053849c0af383..9b7f1917c4afd27ba99d7f7b80169dd3ff53ceec 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim ( Cairo University ) # +easyblock = 'ConfigureMake' + name = 'FLTK' version = '1.3.2' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb index 97c39edc102311373f41374e779870d161184941..11bcbb2f83f28edd4fee5bd3b50522c48d4d14a6 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim ( Cairo University ) # +easyblock = 'ConfigureMake' + name = 'FLTK' version = '1.3.2' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5bc592de5f90db2a73682bc60e9cc7afbcb2da10 --- /dev/null +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb @@ -0,0 +1,30 @@ +# +# author: Dina Mahmoud Ibrahim ( Cairo University ) +# +easyblock = 'ConfigureMake' + +name = 'FLTK' +version = '1.3.2' + +homepage = 'http://www.fltk.org' +description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, + and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL + and its built-in GLUT emulation.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = ['%(namelower)s-%(version)s-source.tar.gz'] +source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('Tk', '8.5.12'), +] + +sanity_check_paths = { + 'files': ['bin/fltk-config','bin/fluid'], + 'dirs': ['lib'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb b/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffe31e9891c95636590d8f71542376656b71cb78 --- /dev/null +++ b/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb @@ -0,0 +1,14 @@ +name = 'FLUENT' +version = '15.0.7' + +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT' +description = """ANSYS FLUENT software contains the broad physical modeling capabilities needed +to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from +air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, +from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['CFXFLUENT1507_LINX64.tar'] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb index 85362e1996dfb00fd2e871013a0b95a39f309ca5..aa0ce18c0cd92151554ea1c96769e4d513811626 100644 --- a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FRC_align' version = '20130521' @@ -19,8 +21,8 @@ dependencies = [ preconfigopts = 'cd src/samtools && make LIBPATH="-L$EBROOTZLIB/lib -L$EBROOTNCURSES/lib" && cd - && ' preconfigopts += 'BOOST_ROOT=$EBROOTBOOST' -makeopts = 'BOOST_LDFLAGS="-L$EBROOTBZIP2/lib -L$EBROOTZLIB/lib -L$EBROOTBOOST/lib" ' -makeopts += 'BOOST_IOSTREAMS_LIBS="-lboost_iostreams"' +buildopts = 'BOOST_LDFLAGS="-L$EBROOTBZIP2/lib -L$EBROOTZLIB/lib -L$EBROOTBOOST/lib" ' +buildopts += 'BOOST_IOSTREAMS_LIBS="-lboost_iostreams"' sanity_check_paths = { 'files': ['bin/FRC', 'bin/FRC_debug'], diff --git a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb index d222f049533f4687cfffab496cff020a769a4686..8a535e0b737dc3ee90929da9fb6e3c156208ad53 100644 --- a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FRC_align' version = '20130521' @@ -19,8 +21,8 @@ dependencies = [ preconfigopts = 'cd src/samtools && make LIBPATH="-L$EBROOTZLIB/lib -L$EBROOTNCURSES/lib" && cd - && ' preconfigopts += 'BOOST_ROOT=$EBROOTBOOST' -makeopts = 'BOOST_LDFLAGS="-L$EBROOTBZIP2/lib -L$EBROOTZLIB/lib -L$EBROOTBOOST/lib" ' -makeopts += 'BOOST_IOSTREAMS_LIBS="-lboost_iostreams"' +buildopts = 'BOOST_LDFLAGS="-L$EBROOTBZIP2/lib -L$EBROOTZLIB/lib -L$EBROOTBOOST/lib" ' +buildopts += 'BOOST_IOSTREAMS_LIBS="-lboost_iostreams"' sanity_check_paths = { 'files': ['bin/FRC', 'bin/FRC_debug'], diff --git a/easybuild/easyconfigs/f/FastTree/FastTree-2.1.7-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FastTree/FastTree-2.1.7-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..0e1e6d0fb4fe43ac53cf331f2e704ec5bdc69794 --- /dev/null +++ b/easybuild/easyconfigs/f/FastTree/FastTree-2.1.7-goolf-1.4.10.eb @@ -0,0 +1,28 @@ +easyblock = 'CmdCp' + +name = 'FastTree' +version = '2.1.7' + +homepage = 'http://www.microbesonline.org/fasttree/' +description = """FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide + or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of + time and memory. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'openmp': True} + +source_urls = ['http://www.microbesonline.org/fasttree/'] +sources = ['%(name)s-%(version)s.c'] + +skipsteps = ['source'] + +cmds_map = [('FastTree.*.c', '$CC -DOPENMP $CFLAGS $LIBS %(source)s -o FastTree')] + +files_to_copy = [(['FastTree'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/FastTree'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FastTree/FastTree-2.1.7-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FastTree/FastTree-2.1.7-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5fb2a1352d9bc24c3bc7e77016715e76a7452f74 --- /dev/null +++ b/easybuild/easyconfigs/f/FastTree/FastTree-2.1.7-ictce-5.5.0.eb @@ -0,0 +1,28 @@ +easyblock = 'CmdCp' + +name = 'FastTree' +version = '2.1.7' + +homepage = 'http://www.microbesonline.org/fasttree/' +description = """FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide + or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of + time and memory. """ + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'openmp': True} + +source_urls = ['http://www.microbesonline.org/fasttree/'] +sources = ['%(name)s-%(version)s.c'] + +skipsteps = ['source'] + +cmds_map = [('FastTree.*.c', '$CC -DOPENMP $CFLAGS $LIBS %(source)s -o FastTree')] + +files_to_copy = [(['FastTree'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/FastTree'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goalf-1.1.0-no-OFED.eb index 6712058e86867a79e4c1576e5f658691afb21e9c..a32a1ae21a6411a7cc4a87ab84f561ef8c1c726d 100644 --- a/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goalf-1.1.0-no-OFED.eb @@ -25,6 +25,6 @@ parallel = 1 patches = ['Ferret-lib64-hardcoded.patch'] -makeopts = 'LD="$CC"' +buildopts = 'LD="$CC"' moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goolf-1.4.10.eb b/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goolf-1.4.10.eb index 02e973122d0f443d27c854e708720c4c65b9fd2b..d05befd06c3182ab7522cae9e6e08904220e62e4 100644 --- a/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/Ferret/Ferret-6.72-goolf-1.4.10.eb @@ -25,6 +25,6 @@ parallel = 1 patches = ['Ferret-lib64-hardcoded.patch'] -makeopts = 'LD="$CC"' +buildopts = 'LD="$CC"' moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb b/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb index 7ebc139c10782b36f2da067ec7e11a4e609e07f6..fc612da0cbbe605bd47094f27194b9e506ed8ac4 100644 --- a/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb +++ b/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb @@ -1,7 +1,7 @@ name = 'FoldX' version = '2.5.2' -homepage = 'http://http://foldx.crg.es/' +homepage = 'http://foldx.crg.es/' description = """FoldX is used to provide a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes.""" diff --git a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb index 13c3d91c35ad6ef588281028bc5e31c5327ded88..64799c2a131967f9594bd4fc58d1f1a6e753159b 100644 --- a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb +++ b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb @@ -1,7 +1,7 @@ name = 'FoldX' version = '3.0-beta5.1' -homepage = 'http://http://foldx.crg.es/' +homepage = 'http://foldx.crg.es/' description = """FoldX is used to provide a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes.""" diff --git a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb new file mode 100644 index 0000000000000000000000000000000000000000..7585ccc7fcef4c0df578f5f8550538d78530352e --- /dev/null +++ b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb @@ -0,0 +1,18 @@ +name = 'FoldX' +version = '3.0-beta6' + +homepage = 'http://foldx.crg.es/' +description = """FoldX is used to provide a fast and quantitative estimation of the importance of the interactions + contributing to the stability of proteins and protein complexes.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# no source URLs because registration is required to obtain sources +sources = ['%(name)s_30b6_linux64.zip'] + +sanity_check_paths = { + 'files': ["bin/%(namelower)s64Linux", "rotabase.txt"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/fastahack/fastahack-20110215-goolf-1.4.10.eb b/easybuild/easyconfigs/f/fastahack/fastahack-20110215-goolf-1.4.10.eb index 87866b3fa0787471a98d5cbd860ce5826211d5dc..ff46f9ce33bec584fa318f136aacf8dae97e3c85 100644 --- a/easybuild/easyconfigs/f/fastahack/fastahack-20110215-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/fastahack/fastahack-20110215-goolf-1.4.10.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] patches = ['fastahack-%(version)s_Makefile-fix.patch'] -makeopts = 'CXX="$CXX" CXXFLAGS="$CXXFLAGS"' +buildopts = 'CXX="$CXX" CXXFLAGS="$CXXFLAGS"' files_to_copy = [(['fastahack'], 'bin')] diff --git a/easybuild/easyconfigs/f/fastahack/fastahack-20110215-ictce-4.1.13.eb b/easybuild/easyconfigs/f/fastahack/fastahack-20110215-ictce-4.1.13.eb index 8b268467f8806ac599ef9492802f9c48b6adf22b..6ed44fa35e17cd39ad665a47a1b2e0d5e58ddb66 100644 --- a/easybuild/easyconfigs/f/fastahack/fastahack-20110215-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/fastahack/fastahack-20110215-ictce-4.1.13.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] patches = ['fastahack-%(version)s_Makefile-fix.patch'] -makeopts = 'CXX="$CXX" CXXFLAGS="$CXXFLAGS"' +buildopts = 'CXX="$CXX" CXXFLAGS="$CXXFLAGS"' files_to_copy = [(['fastahack'], 'bin')] diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..50633eb59802cbdefbad3fbe6707ec1448ce49c2 --- /dev/null +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2015 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'CmdCp' + +name = 'fastqz' +version = '1.5' + +homepage = 'http://mattmahoney.net/dc/fastqz/' +description = """fastqz is a compressor for FASTQ files. FASTQ is the output of DNA sequencing machines. + It is one of the compressors described in the paper: Bonfield JK, Mahoney MV (2013) Compression of + FASTQ and SAM Format Sequencing Data. (mirror) PLoS ONE 8(3): e59190. doi:10.1371/journal.pone.0059190""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'opt': True, 'optarch': True} + +minver = ''.join(version.split('.')) +sources = ['fastqz%s.cpp' % minver, 'fapack.cpp'] +source_urls = [homepage] +checksums = ['0a55cd15605ddf32c31dac5af8c0f442', '490efab4389637da5566cf5173b1d274'] + +dependencies = [('ZPAQ', '7.00')] + +skipsteps = ['source'] + +cmds_map = [ + ('fastqz%s.cpp' % minver, '$CXX $CFLAGS -lpthread %(source)s $EBROOTZPAQ/include/libzpaq.cpp -o fastqz'), + ('fapack.cpp', '$CXX $CFLAGS -s %(source)s -o %(target)s') +] + +files_to_copy = [(['fastqz', 'fapack'], 'bin')] + +sanity_check_paths = { + 'files': ["bin/fastqz", "bin/fapack"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a9bbbfc3c130aaa2f1edec4c1476b3a1c79a7c9f --- /dev/null +++ b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'ffmpeg' +version = '2.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' + +dependencies = [ + ('NASM', '2.11.05'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server'] ] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..63db8305d5a81ee034b3a260ab80a7dfbe24355a --- /dev/null +++ b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb @@ -0,0 +1,25 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +## + +easyblock = 'ConfigureMake' + +name = 'file' +version = '5.17' + +homepage = 'http://www.darwinsys.com/file/' +description = """The file command is 'a file type guesser', that is, a command-line tool + that tells you in words what kind of data a file contains.""" + +source_urls = ['ftp://ftp.astron.com/pub/file/'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sanity_check_paths = { + 'files': ['bin/file'], + 'dirs': [] +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index 0160acc4c492e0e8b60ce4edf13c9324271bbfb5..6b2e49e08adf695648b9019ff2e298cf4c2bc856 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'findutils' version = '4.2.33' diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index b2d360c1856a8f7a9a4eb23c99480ae94f429817..ea5abc6927053a5eddc74a1e7767b518880c16c6 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'findutils' version = '4.2.33' diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..bd925b7e0f109e1a5aeb727fe38e81bb2fa26740 --- /dev/null +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'findutils' +version = '4.4.2' + +homepage = 'http://www.gnu.org/software/findutils/findutils.html' +description = "findutils: The GNU find, locate, updatedb, and xargs utilities" + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sanity_check_paths = { + 'files': ['bin/find', 'bin/locate', 'bin/updatedb', 'bin/xargs'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb index 50fd8ada0f6403f932d9d1bc8f087e4bd765e1c4..80e72c01e5bb3b8b04659e2067134a22e720b622 100644 --- a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'fixesproto' version = '5.0' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb index 3b661266ea900dc318f301eddd23cd583ba8ff2d..c52db08f490f4e4e4d1dcdc398943c33a72e4684 100644 --- a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'fixesproto' version = '5.0' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb index 550ddb6d6ef0e296867462f05ebf605ee3ea5761..06e3d71fbaec6a89a48ba660d029649d15a409d7 100644 --- a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'fixesproto' version = '5.0' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb b/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..3f5206f66ceb7f98101f7829015b32fa3141a733 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.37' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, +sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.37-ictce-7.1.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.37-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..49b33f6544d9ec8b1dbae9fad382fa757c5b3b24 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.37-ictce-7.1.2.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.37' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.37-intel-2014b.eb b/easybuild/easyconfigs/f/flex/flex-2.5.37-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..70f81245b8307d2dd1579cc021aee795f7118760 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.37-intel-2014b.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.37' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.38-GCC-4.8.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.38-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..ebeac6decb386bad53186837d7ec02cdaac74d84 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.38-GCC-4.8.2.eb @@ -0,0 +1,13 @@ +name = 'flex' +version = '2.5.38' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.38-ictce-6.1.5.eb b/easybuild/easyconfigs/f/flex/flex-2.5.38-ictce-6.1.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..82f9831d98e62924cf561b000632e694f72c6a9b --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.38-ictce-6.1.5.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.38' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'ictce', 'version': '6.1.5'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..9b7e0571f2da77cea633a99219f9e72c49153bfa --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-ictce-7.1.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc6e43a06efd405a2d7e998c1fc1843b3af8f2b0 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-ictce-7.1.2.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2014b.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a2a804a3796434f6b2a46eb1c72cf4b130fc7821 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2014b.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..859df835438604c2d657d943debec8a1e071b57f --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/fmri/fmri-1.5.0-ictce-5.3.0-R-2.15.3.eb b/easybuild/easyconfigs/f/fmri/fmri-1.5-0-ictce-5.3.0-R-2.15.3.eb similarity index 100% rename from easybuild/easyconfigs/f/fmri/fmri-1.5.0-ictce-5.3.0-R-2.15.3.eb rename to easybuild/easyconfigs/f/fmri/fmri-1.5-0-ictce-5.3.0-R-2.15.3.eb diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb index 5f71041388077c2672464943a82713275e3665f5..82b3565a1dfa385b88860957e5ef39decdcb95a6 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb index 42d7b41c58068c267de2cdff104cfba5e908666e..dd066a598ffff10f0ee6aadfdc9a6caeeb2b3beb 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb index 891a043436663bbe418f101386c66897c74fe24e..4598e6c85116e05655e03cac76bfab9ef195084c 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb index 61ef5c14b4d1ebb7eca383e3b7eaf712d3dd9e5e..954d9c78a7d539ffbaf62e38735e4a5e65f0f75e 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..4cd5e51c8c12c38e5035df12bc9aae0af6388597 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.1.0'), + ('freetype','2.5.3'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..bd134c69d5387ed4119261808358753783eeb5a3 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('expat', '2.1.0')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d43a6c1f3b98621ae23421aa0a56486966b0f7f --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.1.0'), + ('freetype','2.5.3'), +] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/foss/foss-2014b.eb b/easybuild/easyconfigs/f/foss/foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ff6c5693e15c34ab4df7050215d1736a2c4b025 --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2014b.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'foss' +version = '2014b' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.3' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.9' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + ('GCC', '4.8.3'), + ('OpenMPI', '1.8.1', '', comp), + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/f/foss/foss-2015a.eb b/easybuild/easyconfigs/f/foss/foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4aea01af45d26e319bf6dc3b9b73c3a8a7ab6527 --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2015a.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'foss' +version = '2015a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('OpenMPI', '1.8.4', '', comp), + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..0f7a6c3ea5b97878bd3cf555af52f525fabd32d5 --- /dev/null +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2015 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'fqzcomp' +version = '4.6' + +homepage = 'http://sourceforge.net/projects/fqzcomp/' +description = """Fqzcomp is a basic fastq compressor, designed primarily for high performance. + Despite that it is comparable to bzip2 for compression levels.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +files_to_copy = [(['fqz_comp'], 'bin')] + +sanity_check_paths = { + 'files': ["bin/fqz_comp"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb index 11d38c6295e9233c21ea80a4d3933a0fc4bca01e..d7a5bba2c4e0eca57695a978cd0415ab5f8c600d 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'freeglut' version = '2.8.1' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb index 2c7f6211774c841e573db1394761421d70a604a6..7f4b598d23f85ba56d91f92d896ee629f825c0e3 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'freeglut' version = '2.8.1' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb index 5a15cb771924790a5e78c09ec454743f668a5b2e..0519e56f117879db92d4ee8cb1f95db65941249f 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'freeglut' version = '2.8.1' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c6397df9cf9e60b9dda5f9524da1f08be7b00a0e --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.3' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.12')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c0d1a23ea9cf481b6bda79480d1b8a55439e90f9 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.3' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.12')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..1b62309c546cf38fc4e6c1f584b3ba0ef74e8996 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb @@ -0,0 +1,23 @@ +name = 'GATE' +version = '6.1' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'ictce', 'version': '4.0.6'} + +sources = [('%%(namelower)s_v%s_tar_gz_98524.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2011/03/'] + +dependencies = [ + ('Geant4', '9.4.p02'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +parallel = 1 + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..b3ec8c73df6e80ef02530bc01bec8988919660ca --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb @@ -0,0 +1,23 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = ['GATE-%(version)s_Makefile-prefix.patch'] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0862bba48f05988f0aa62c4b546368911c52d69 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb @@ -0,0 +1,26 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = [ + 'GATE-%(version)s_Makefile-prefix.patch', + 'GATE-%(version)s_GCC-4.7.patch', +] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..3fe22c082c977907970571c3f3ece0deab04e499 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb @@ -0,0 +1,23 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'ictce', 'version': '4.0.6'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = ['GATE-%(version)s_Makefile-prefix.patch'] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch b/easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch new file mode 100644 index 0000000000000000000000000000000000000000..c06cd2b8e3f33384dc65a92b2003f9c1ea3ff3c6 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch @@ -0,0 +1,22 @@ +diff -ru gate_v6.2.orig/source/digits_hits/include/GateMaps.hh gate_v6.2/source/digits_hits/include/GateMaps.hh +--- gate_v6.2.orig/source/digits_hits/include/GateMaps.hh 2012-08-08 13:38:18.000000000 +0200 ++++ gate_v6.2/source/digits_hits/include/GateMaps.hh 2013-03-28 10:50:28.225482716 +0100 +@@ -117,7 +117,7 @@ + for (size_t i=0; i* mapElement = mapArray[i]; + for (iterator iter = mapElement->begin(); iter != mapElement->end(); iter++) +- insert(*iter); ++ this->insert(*iter); + } + } + +--- gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh.orig 2014-12-02 11:50:23.586463425 +0100 ++++ gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh 2014-12-02 11:51:45.498508680 +0100 +@@ -19,6 +19,7 @@ + #include + #include + #include ++#include + + using namespace std; + diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch b/easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch new file mode 100644 index 0000000000000000000000000000000000000000..8347193f828c6cb3b92e27ebfac81b9d4442f100 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch @@ -0,0 +1,46 @@ +--- gate_v6.2/cluster_tools/filemerger/Makefile.orig 2014-12-02 12:00:20.331450693 +0100 ++++ gate_v6.2/cluster_tools/filemerger/Makefile 2014-12-02 12:01:35.263325236 +0100 +@@ -16,6 +16,8 @@ + INCLUDE := -I./include `geant4-config --cflags` `root-config --cflags` + LDFLAGS := `geant4-config --libs` `root-config --glibs` + ++PREFIX := /usr/local ++ + TARGET := gjm + + .PHONY: all clean directories cleanall install uninstall +@@ -49,8 +51,9 @@ + + install: + @echo Installing ... +- @$(CP) $(TARGET) /usr/local/bin ++ mkdir -p $(PREFIX)/bin ++ @$(CP) $(TARGET) $(PREFIX)/bin + + uninstall: + @echo Uninstalling... +- @$(RM) /usr/local/bin/$(TARGET) ++ @$(RM) $(PREFIX)/bin/$(TARGET) +--- gate_v6.2/cluster_tools/jobsplitter/Makefile.orig 2014-12-02 12:01:48.033648372 +0100 ++++ gate_v6.2/cluster_tools/jobsplitter/Makefile 2014-12-02 12:02:32.104712220 +0100 +@@ -16,6 +16,8 @@ + INCLUDE := -I./include `geant4-config --cflags` + LDFLAGS := `geant4-config --libs` + ++PREFIX := /usr/local ++ + TARGET := gjs + + .PHONY: all clean directories cleanall install uninstall +@@ -57,8 +59,9 @@ + + install: + @echo Installing ... +- @$(CP) $(TARGET) /usr/local/bin ++ mkdir -p $(PREFIX)/bin ++ @$(CP) $(TARGET) $(PREFIX)/bin + + uninstall: + @echo Uninstalling... +- @$(RM) /usr/local/bin/$(TARGET) ++ @$(RM) $(PREFIX)/bin/$(TARGET) diff --git a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb deleted file mode 100644 index e01cfc2962309345062e4a2d668c20e1fdcfc872..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'GATE' -version = 'v6.2' - -homepage = 'http://www.opengatecollaboration.org/' -description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and - dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography - (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" - -toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} - -sources = [('%s_%s_tar_gz_15843.gz' % (name.lower(), '_'.join(version.split('.'))), "tar xfvz %s")] -source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] - -dependencies = [ - ('Geant4', '9.5.p01'), - ('CLHEP', '2.1.1.0'), - ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), - ] - -sanity_check_paths = { - 'files': ["bin/Gate"] + - ["Utilities/itkzlib/%s" % x for x in ['itk_zlib_mangle.h', 'zconf.h', - 'zlibDllConfig.h', 'zlib.h']] + - ["Utilities/MetaIO/%s" % x for x in ['localMetaConfiguration.h', 'metaDTITube.h', - 'metaImage.h', 'metaMesh.h', 'metaTubeGraph.h', - 'metaUtils.h']], - 'dirs' : [], - } - -moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb deleted file mode 100644 index cb389a2ba2e63e868763a1e3832a864fe53d195c..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'GATE' -version = 'v6.2' - -homepage = 'http://www.opengatecollaboration.org/' -description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and -dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography -(Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" -toolchain = {'name': 'goolf', 'version': '1.4.10'} - -sources = [('%s_%s_tar_gz_15843.gz' % (name.lower(), '_'.join(version.split('.'))), "tar xfvz %s")] -source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] - -patches = ['GATE-v6.2_GCC-4.7.patch'] - -dependencies = [ - ('Geant4', '9.5.p01'), - ('CLHEP', '2.1.1.0'), - ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), - ] - -sanity_check_paths = { - 'files': ["bin/Gate"] + - ["Utilities/itkzlib/%s" % x for x in ['itk_zlib_mangle.h', 'zconf.h', - 'zlibDllConfig.h', 'zlib.h']] + - ["Utilities/MetaIO/%s" % x for x in ['localMetaConfiguration.h', 'metaDTITube.h', - 'metaImage.h', 'metaMesh.h', 'metaTubeGraph.h', - 'metaUtils.h']], - 'dirs' : [], - } - -moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb deleted file mode 100644 index 445c274e36387bb6d5f2c2c22f723a58fdccc18e..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'GATE' -version = 'v6.2' - -homepage = 'http://www.opengatecollaboration.org/' -description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and - dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography - (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" - -toolchain = {'name': 'ictce', 'version': '4.0.6'} - -sources = [('%s_%s_tar_gz_15843.gz' % (name.lower(), '_'.join(version.split('.'))), "tar xfvz %s")] -source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] - -dependencies = [ - ('Geant4', '9.5.p01'), - ('CLHEP', '2.1.1.0'), - ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), - ] - -sanity_check_paths = { - 'files': ["bin/Gate"] + - ["Utilities/itkzlib/%s" % x for x in ['itk_zlib_mangle.h', 'zconf.h', - 'zlibDllConfig.h', 'zlib.h']] + - ["Utilities/MetaIO/%s" % x for x in ['localMetaConfiguration.h', 'metaDTITube.h', - 'metaImage.h', 'metaMesh.h', 'metaTubeGraph.h', - 'metaUtils.h']], - 'dirs' : [], - } - -moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 4c9f63f9c599cc19d2fe190f9194cf815a567461..daf52209028c60e3c5b5a07678f041e95b6f8ec8 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 833388f606efb766b1a50ebf6f29df88fe62fa8b..0c9ece0c956dd82d1040226b8a0b33c9133f979d 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index c75c22094bebf98b62fe15e69026e89aa64aa848..12fe8dadb4ffcaa0a9dd9e48e8a65179b462994f 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index c3a788ffe2f1d8a6c72a02c7300a90254ed94a7a..aa6e7fe2329812a0b0fe2e81e6f94d6609924724 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..15db97e46228730edc4d50f31fe511bc6d79fe0c --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb @@ -0,0 +1,34 @@ +name = "GCC" +version = '4.1.2' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, + Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded + +source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +checksums = [ + 'a4a3eb15c96030906d8494959eeda23c', # gcc-4.1.2.tar.bz2 +] + +dependencies = [ + ('GMP', '4.3.2'), + ('MPFR', '2.4.2'), +] + +# building GCC v4.1.2 requires an old GCC version, so don't rely on system compiler +builddependencies = [('GCC', '4.2.4')] + +languages = ['c', 'c++', 'fortran'] + +configopts = "--with-gmp=$EBROOTGMP --with-mpfr=$EBROOTMPFR" + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +withlto = False + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..690c94392b68210353b7ad2a3d58ebfc8feac755 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb @@ -0,0 +1,31 @@ +name = "GCC" +version = '4.2.4' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, + Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded + +source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +checksums = [ + 'd79f553e7916ea21c556329eacfeaa16', # gcc-4.2.4.tar.bz2 +] + +dependencies = [ + ('GMP', '4.3.2'), + ('MPFR', '2.4.2'), +] + +languages = ['c', 'c++', 'fortran'] + +configopts = "--with-gmp=$EBROOTGMP --with-mpfr=$EBROOTMPFR" + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +withlto = False + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb b/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..d2df4b4c4283f695c83b37c27623ded012fe7bf6 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb @@ -0,0 +1,31 @@ +name = "GCC" +version = '4.3.6' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, + Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded + +source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +checksums = [ + '55ddf934bc9f8d1eaff7a77e7d598a85', # gcc-4.3.6.tar.bz2 +] + +dependencies = [ + ('GMP', '4.3.2'), + ('MPFR', '2.4.2'), +] + +languages = ['c', 'c++', 'fortran'] + +configopts = "--with-gmp=$EBROOTGMP --with-mpfr=$EBROOTMPFR" + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +withlto = False + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb b/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..584afb9b7cae1dc219e4a8ece7021de8ae2f737e --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb @@ -0,0 +1,32 @@ +name = "GCC" +version = '4.4.7' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, + Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dependencies are loaded + +source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +checksums = [ + '295709feb4441b04e87dea3f1bab4281', # gcc-4.4.7.tar.bz2 +] + +dependencies = [ + ('GMP', '4.3.2'), + ('MPFR', '2.4.2'), +] + +languages = ['c', 'c++', 'fortran'] + +# the build will fail if a new version of texinfo is found, so disable +configopts = "--with-gmp=$EBROOTGMP --with-mpfr=$EBROOTMPFR MAKEINFO=MISSING" + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +withlto = False + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb index 910274c9af7b158cfdecc5a28ed4c12d9bcc4f09..bcb7fd7639a6706de15cb624cc6eaf15df123bb7 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb @@ -20,7 +20,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies, for PPL and CLooG-PPL 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - sources = [ SOURCELOWER_TAR_GZ, 'gmp-5.0.2.tar.gz', @@ -30,6 +29,15 @@ sources = [ 'ppl-%s.tar.gz' % pplver, ] +checksums = [ + 'bf100d5b3b88f7938752e43c90e48f48', # gcc-4.5.3.tar.gz + '87e73447afdc2ca5cefd987da865da51', # gmp-5.0.2.tar.gz + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + 'e98267ebd5648a39f881d66797122fb6', # mpc-0.8.2.tar.gz + '060ae4df6fb8176e021b4d033a6c0b9e', # cloog-ppl-0.15.11.tar.gz + 'ba527ec0ffc830ce16fad8a4195a337e', # ppl-0.11.tar.gz +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb index 625423d639dd695918650e1575e9c61e53b00189..9a31d20e935f7c11450522f60b4ac80edffd4b26 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-0.8.2.tar.gz', ] +checksums = [ + 'bf100d5b3b88f7938752e43c90e48f48', # gcc-4.5.3.tar.gz + '87e73447afdc2ca5cefd987da865da51', # gmp-5.0.2.tar.gz + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + 'e98267ebd5648a39f881d66797122fb6', # mpc-0.8.2.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb index a1d6e1e55417cfe05e1c2b88dce4999a64fda39b..3a9114bc8654b0f7b79b159d4d244a9263860721 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb @@ -29,7 +29,16 @@ sources = [ 'ppl-%s.tar.gz' % pplver, ] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'c51e55130ab9ca3e5f34014cac15dd39', # gcc-4.6.3.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz + '060ae4df6fb8176e021b4d033a6c0b9e', # cloog-ppl-0.15.11.tar.gz + '47a5548d4e3d98cf6b97e4fd3e5db513', # ppl-0.12.tar.gz +] + +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb index d2eb78bb89762ce8a656be211852d2111abe1ed5..884bd3660ed2101fff02999d160ce7a7246f78b1 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb @@ -20,7 +20,14 @@ sources = [ 'mpc-0.9.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'c51e55130ab9ca3e5f34014cac15dd39', # gcc-4.6.3.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb index bf4adc61a6efdd35b84d4822113d17f881893477..6d06e3dc2732674727b70f8214df0f9175b032d6 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb @@ -20,10 +20,18 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] - patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + 'a8f15fc233589924ccd8cc8140b0ca3c', # gcc-4.6.4.tar.gz + '2fa018a7cd193c78494525f236d02dd6', # gmp-5.1.1.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] + # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb index dd3b7c67d13d2f1420afa3434d2f822f95615ec2..b46830b3c9569bef4d7fcf6c310796a80ba23abb 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb @@ -31,7 +31,17 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'ef5117788e27ffef05f8b8adf46f91d8', # gcc-4.7.0.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + '10968131acc26d79311ac4f8982ff078', # mpfr-3.1.0.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz + '947123350d1ff6dcb4b0774947ac015a', # cloog-0.16.1.tar.gz + '47a5548d4e3d98cf6b97e4fd3e5db513', # ppl-0.12.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb index 8ad3d8163436a5b0bed0286f5c5f399ca5b86c2f..25a490f3555105125ea3cab90eba03790f2c48c4 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb @@ -7,22 +7,30 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [ - SOURCELOWER_TAR_GZ, - 'gmp-5.0.4.tar.bz2', - 'mpfr-3.1.0.tar.gz', - 'mpc-0.9.tar.gz', -] source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.0.4.tar.bz2', + 'mpfr-3.1.0.tar.gz', + 'mpc-0.9.tar.gz', +] patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'ef5117788e27ffef05f8b8adf46f91d8', # gcc-4.7.0.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + '10968131acc26d79311ac4f8982ff078', # mpfr-3.1.0.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb index 107e7769839cd7b30ebc50c78d37bcb5d40a2a5e..6c58ae7bc665ce04109c057c741ec9fafef2fd78 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb @@ -31,7 +31,17 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + '3d06e24570635c91eed6b114687513a6', # gcc-4.7.1.tar.gz + '041487d25e9c230b0c42b106361055fe', # gmp-5.0.5.tar.bz2 + '769411e241a3f063ae1319eb5fac2462', # mpfr-3.1.1.tar.gz + '13370ceb2e266c5eeb2f7e78c24b7858', # mpc-1.0.tar.gz + 'a0f8a241cd1c4f103f8d2c91642b3498', # cloog-0.16.3.tar.gz + '47a5548d4e3d98cf6b97e4fd3e5db513', # ppl-0.12.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb index ec25afed60bf3f6feacbbe987bdc6e2243dcef21..b3ad3f80878176b2a3a3b4c23f7d09ba6a159a96 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb @@ -22,7 +22,15 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + '3d06e24570635c91eed6b114687513a6', # gcc-4.7.1.tar.gz + '041487d25e9c230b0c42b106361055fe', # gmp-5.0.5.tar.bz2 + '769411e241a3f063ae1319eb5fac2462', # mpfr-3.1.1.tar.gz + '13370ceb2e266c5eeb2f7e78c24b7858', # mpc-1.0.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb index 7b4dfcf410f1d379ee75009d37d4106f0c660927..decee62a5859c5f930e40bd3782ebe1dc6c40b1a 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb @@ -8,10 +8,10 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR - 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ SOURCELOWER_TAR_GZ, @@ -22,7 +22,15 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + '5199d34506d4fa6528778ddba362d3f4', # gcc-4.7.2.tar.gz + '041487d25e9c230b0c42b106361055fe', # gmp-5.0.5.tar.bz2 + '769411e241a3f063ae1319eb5fac2462', # mpfr-3.1.1.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb index 61afac13bc525877ca0e4f380fc7001b7482f6e4..8f5cae195cf19f66410fa3626c3838df124c461a 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb @@ -34,7 +34,18 @@ patches = [ 'mpfr-3.1.0-changes_fix.patch', ] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'd518eace24a53aef59c2c69498ea4989', # gcc-4.7.3.tar.gz + '7e3516128487956cd825fef01aafe4bc', # gmp-5.1.2.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'a0f8a241cd1c4f103f8d2c91642b3498', # cloog-0.16.3.tar.gz + 'cec8144f2072ac45a850214cca97d075', # ppl-0.12.1.tar.gz + 'b6153bac75ee9e2a78e08ee97bf045f2', # ppl-0.12.1-mpfr.patch + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb index ed1e5699b65d9775dabbfba01c3c64fd73fcf9c0..03f65ea5f026b3eff5692ccef0efe5564a2b35f1 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb @@ -22,7 +22,15 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'd518eace24a53aef59c2c69498ea4989', # gcc-4.7.3.tar.gz + '2fa018a7cd193c78494525f236d02dd6', # gmp-5.1.1.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb new file mode 100644 index 0000000000000000000000000000000000000000..da943f7026d9b7dca05e6920f55d09f71f9b3df7 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb @@ -0,0 +1,58 @@ +name = "GCC" +version = '4.7.4' +versionsuffix = "-CLooG-PPL" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, + Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +pplver = '0.12.1' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://bugseng.com/products/ppl/download/ftp/releases/%s' % pplver, # PPL official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies, for PPL and CLooG-PPL + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.16.3.tar.gz', + 'ppl-%s.tar.gz' % pplver, +] + +patches = [ + ('ppl-0.12.1-mpfr.patch', '../ppl-%s' % pplver), + 'mpfr-3.1.0-changes_fix.patch', +] + +checksums = [ + 'f07a9c4078dbccdcc18bc840ab5e0fe9', # gcc-4.7.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'a0f8a241cd1c4f103f8d2c91642b3498', # cloog-0.16.3.tar.gz + 'cec8144f2072ac45a850214cca97d075', # ppl-0.12.1.tar.gz + 'b6153bac75ee9e2a78e08ee97bf045f2', # ppl-0.12.1-mpfr.patch + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withppl = True + +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d688569b04d945309671f09f4c271e90aaafd61 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb @@ -0,0 +1,38 @@ +name = "GCC" +version = '4.7.4' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, + Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', +] + +patches = ['mpfr-3.1.0-changes_fix.patch'] + +checksums = [ + 'f07a9c4078dbccdcc18bc840ab5e0fe9', # gcc-4.7.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb index 1d74df847f92545643102a7fe4d7bb92767b5b15..97ecab725e60db03bea4b939a16922fc2e32cc58 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb @@ -23,12 +23,22 @@ sources = [ 'mpfr-3.1.2.tar.gz', 'mpc-1.0.1.tar.gz', 'cloog-0.18.0.tar.gz', + 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + '74cc12b7afe051ab7d0e00269e49fc9b', # gcc-4.8.1.tar.gz + '7e3516128487956cd825fef01aafe4bc', # gmp-5.1.2.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] -withcloog = True +languages = ['c', 'c++', 'fortran'] +withcloog = True +withisl = True clooguseisl = True # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb index cc480ab69cd47befdc91069b157ef558541d2ec7..18a5c26a0427e09729a7f50f58eb2ef181bd930b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb @@ -20,7 +20,14 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + '74cc12b7afe051ab7d0e00269e49fc9b', # gcc-4.8.1.tar.gz + '7e3516128487956cd825fef01aafe4bc', # gmp-5.1.2.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..0cc4d2d8be7fd389ad7f0f79e211783994c5f7d7 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb @@ -0,0 +1,49 @@ +name = "GCC" +version = '4.8.2' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.0.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb new file mode 100644 index 0000000000000000000000000000000000000000..76ee08688ea2fedc67abd1ba8836775d2e8592c8 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb @@ -0,0 +1,47 @@ +name = "GCC" +version = '4.8.2' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.0.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..45168e2586049545e95a7d8100e84346bd09488c --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb @@ -0,0 +1,38 @@ +name = "GCC" +version = '4.8.2' +versionsuffix = '-multilib' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', +] + +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + +languages = ['c', 'c++', 'fortran'] + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb index cef08026016a80694ade6e8ab1d5d0c6bd6c0503..4f8e1b941b4ef5502a0585f5a97db7b87b04a204 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb @@ -20,7 +20,14 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..cdf28092c4fee66e0640dcd4120739e25d46ed78 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb @@ -0,0 +1,49 @@ +name = "GCC" +version = '4.8.3' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +checksums = [ + 'e2c60f5ef918be2db08df96c7d97d0c4', # gcc-4.8.3.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..10a1ebfca0c13c269c9ce0edca35ffe4cf6b869e --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb @@ -0,0 +1,35 @@ +name = "GCC" +version = '4.8.3' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', +] + +checksums = [ + 'e2c60f5ef918be2db08df96c7d97d0c4', # gcc-4.8.3.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..621a6661efbbe931843e49e9ae13059c6222dd0f --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb @@ -0,0 +1,49 @@ +name = "GCC" +version = '4.8.4' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +checksums = [ + '0c92ac45af5b280e301ca56b40fdaea2', # gcc-4.8.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb new file mode 100644 index 0000000000000000000000000000000000000000..7dd0f5df2417eeb5b9f4373e2dc5e7a7d4dbdc16 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb @@ -0,0 +1,47 @@ +name = "GCC" +version = '4.8.4' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.0.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +checksums = [ + '0c92ac45af5b280e301ca56b40fdaea2', # gcc-4.8.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ac47478fb0e9e75882bc0cca3d08b3b8bce0976 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb @@ -0,0 +1,35 @@ +name = "GCC" +version = '4.8.4' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', +] + +checksums = [ + '0c92ac45af5b280e301ca56b40fdaea2', # gcc-4.8.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..f77a70efc324adf52046ce3c70c4debc33c16a13 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb @@ -0,0 +1,54 @@ +name = "GCC" +version = '4.9.0' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '9709b49ae0e904cbb0a6a1b62853b556', # gcc-4.9.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb new file mode 100644 index 0000000000000000000000000000000000000000..9974833bba59a31a3f63ff7cf7e6eba06bcedb9a --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb @@ -0,0 +1,52 @@ +name = "GCC" +version = '4.9.0' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '9709b49ae0e904cbb0a6a1b62853b556', # gcc-4.9.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cd09534c392e7c40d452193bba441f07b3990c9b --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb @@ -0,0 +1,40 @@ +name = "GCC" +version = '4.9.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '9709b49ae0e904cbb0a6a1b62853b556', # gcc-4.9.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..a3c67d644eca470aae379d1cf124de3222358c56 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb @@ -0,0 +1,54 @@ +name = "GCC" +version = '4.9.1' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + 'fddf71348546af523353bd43d34919c1', # gcc-4.9.1.tar.gz + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb new file mode 100644 index 0000000000000000000000000000000000000000..b78ac53014e98c0fed32e19b1080e14a0a4dac48 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb @@ -0,0 +1,52 @@ +name = "GCC" +version = '4.9.1' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + 'fddf71348546af523353bd43d34919c1', # gcc-4.9.1.tar.gz + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..21e41342d35f8697a93033cd5585affafb06680a --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb @@ -0,0 +1,40 @@ +name = "GCC" +version = '4.9.1' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + 'fddf71348546af523353bd43d34919c1', # gcc-4.9.1.tar.gz + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb new file mode 100644 index 0000000000000000000000000000000000000000..0906283ab2eeb69d0de701fe2961f588b61c5bd9 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb @@ -0,0 +1,54 @@ +name = "GCC" +version = '4.9.2' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb new file mode 100644 index 0000000000000000000000000000000000000000..1af6bd9c365216d2a784bb27bec01b94dd952e57 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb @@ -0,0 +1,52 @@ +name = "GCC" +version = '4.9.2' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..cb9f3aa4f229fc45b33965ec6cc89e9850de59f8 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -0,0 +1,40 @@ +name = "GCC" +version = '4.9.2' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20140630.patch b/easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20140630.patch new file mode 100644 index 0000000000000000000000000000000000000000..36d245a20f80f0b562f36f3da1dd29af9a71c254 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20140630.patch @@ -0,0 +1,1579 @@ +# All mpfr patches as of 2014-06-30 +# taken from their website +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-09-26 10:52:52.000000000 +0000 +@@ -0,0 +1 @@ ++exp_2 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-03-13 15:37:28.000000000 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-09-26 10:52:52.000000000 +0000 +@@ -1 +1 @@ +-3.1.2 ++3.1.2-p1 +diff -Naurd mpfr-3.1.2-a/src/exp_2.c mpfr-3.1.2-b/src/exp_2.c +--- mpfr-3.1.2-a/src/exp_2.c 2013-03-13 15:37:28.000000000 +0000 ++++ mpfr-3.1.2-b/src/exp_2.c 2013-09-26 10:52:52.000000000 +0000 +@@ -204,7 +204,7 @@ + for (k = 0; k < K; k++) + { + mpz_mul (ss, ss, ss); +- exps <<= 1; ++ exps *= 2; + exps += mpz_normalize (ss, ss, q); + } + mpfr_set_z (s, ss, MPFR_RNDN); +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-03-13 15:37:37.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-09-26 10:52:52.000000000 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2" ++#define MPFR_VERSION_STRING "3.1.2-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-03-13 15:37:34.000000000 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-09-26 10:52:52.000000000 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2"; ++ return "3.1.2-p1"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-09-26 10:56:55.000000000 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-09-26 10:56:55.000000000 +0000 +@@ -0,0 +1 @@ ++fits-smallneg +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-09-26 10:56:55.000000000 +0000 +@@ -1 +1 @@ +-3.1.2-p1 ++3.1.2-p2 +diff -Naurd mpfr-3.1.2-a/src/fits_u.h mpfr-3.1.2-b/src/fits_u.h +--- mpfr-3.1.2-a/src/fits_u.h 2013-03-13 15:37:35.000000000 +0000 ++++ mpfr-3.1.2-b/src/fits_u.h 2013-09-26 10:56:55.000000000 +0000 +@@ -32,17 +32,20 @@ + int res; + + if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (f))) +- /* Zero always fit */ +- return MPFR_IS_ZERO (f) ? 1 : 0; +- else if (MPFR_IS_NEG (f)) +- /* Negative numbers don't fit */ +- return 0; +- /* now it fits if +- (a) f <= MAXIMUM +- (b) round(f, prec(slong), rnd) <= MAXIMUM */ ++ return MPFR_IS_ZERO (f) ? 1 : 0; /* Zero always fits */ + + e = MPFR_GET_EXP (f); + ++ if (MPFR_IS_NEG (f)) ++ return e >= 1 ? 0 /* f <= -1 does not fit */ ++ : rnd != MPFR_RNDN ? MPFR_IS_LIKE_RNDU (rnd, -1) /* directed mode */ ++ : e < 0 ? 1 /* f > -1/2 fits in MPFR_RNDN */ ++ : mpfr_powerof2_raw(f); /* -1/2 fits, -1 < f < -1/2 don't */ ++ ++ /* Now it fits if ++ (a) f <= MAXIMUM ++ (b) round(f, prec(slong), rnd) <= MAXIMUM */ ++ + /* first compute prec(MAXIMUM); fits in an int */ + for (s = MAXIMUM, prec = 0; s != 0; s /= 2, prec ++); + +diff -Naurd mpfr-3.1.2-a/src/fits_uintmax.c mpfr-3.1.2-b/src/fits_uintmax.c +--- mpfr-3.1.2-a/src/fits_uintmax.c 2013-03-13 15:37:33.000000000 +0000 ++++ mpfr-3.1.2-b/src/fits_uintmax.c 2013-09-26 10:56:55.000000000 +0000 +@@ -27,51 +27,19 @@ + #include "mpfr-intmax.h" + #include "mpfr-impl.h" + +-#ifdef _MPFR_H_HAVE_INTMAX_T +- +-/* We can't use fits_u.h <= mpfr_cmp_ui */ +-int +-mpfr_fits_uintmax_p (mpfr_srcptr f, mpfr_rnd_t rnd) +-{ +- mpfr_exp_t e; +- int prec; +- uintmax_t s; +- mpfr_t x; +- int res; +- +- if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (f))) +- /* Zero always fit */ +- return MPFR_IS_ZERO (f) ? 1 : 0; +- else if (MPFR_IS_NEG (f)) +- /* Negative numbers don't fit */ +- return 0; +- /* now it fits if +- (a) f <= MAXIMUM +- (b) round(f, prec(slong), rnd) <= MAXIMUM */ +- +- e = MPFR_GET_EXP (f); +- +- /* first compute prec(MAXIMUM); fits in an int */ +- for (s = MPFR_UINTMAX_MAX, prec = 0; s != 0; s /= 2, prec ++); +- +- /* MAXIMUM needs prec bits, i.e. MAXIMUM = 2^prec - 1 */ +- +- /* if e <= prec - 1, then f < 2^(prec-1) < MAXIMUM */ +- if (e <= prec - 1) +- return 1; ++/* Note: though mpfr-impl.h is included in fits_u.h, we also include it ++ above so that it gets included even when _MPFR_H_HAVE_INTMAX_T is not ++ defined; this is necessary to avoid an empty translation unit, which ++ is forbidden by ISO C. Without this, a failing test can be reproduced ++ by creating an invalid stdint.h somewhere in the default include path ++ and by compiling MPFR with "gcc -ansi -pedantic-errors". */ + +- /* if e >= prec + 1, then f >= 2^prec > MAXIMUM */ +- if (e >= prec + 1) +- return 0; ++#ifdef _MPFR_H_HAVE_INTMAX_T + +- MPFR_ASSERTD (e == prec); ++#define FUNCTION mpfr_fits_uintmax_p ++#define MAXIMUM MPFR_UINTMAX_MAX ++#define TYPE uintmax_t + +- /* hard case: first round to prec bits, then check */ +- mpfr_init2 (x, prec); +- mpfr_set (x, f, rnd); +- res = MPFR_GET_EXP (x) == e; +- mpfr_clear (x); +- return res; +-} ++#include "fits_u.h" + + #endif +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-09-26 10:56:55.000000000 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p1" ++#define MPFR_VERSION_STRING "3.1.2-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-09-26 10:56:55.000000000 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p1"; ++ return "3.1.2-p2"; + } +diff -Naurd mpfr-3.1.2-a/tests/tfits.c mpfr-3.1.2-b/tests/tfits.c +--- mpfr-3.1.2-a/tests/tfits.c 2013-03-13 15:37:45.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tfits.c 2013-09-26 10:56:55.000000000 +0000 +@@ -33,155 +33,176 @@ + #include "mpfr-intmax.h" + #include "mpfr-test.h" + +-#define ERROR1 { printf("Initial error for x="); mpfr_dump(x); exit(1); } +-#define ERROR2 { printf("Error for x="); mpfr_dump(x); exit(1); } ++#define ERROR1(N) \ ++ do \ ++ { \ ++ printf("Error %d for rnd = %s and x = ", N, \ ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r)); \ ++ mpfr_dump(x); \ ++ exit(1); \ ++ } \ ++ while (0) + + static void check_intmax (void); + + int + main (void) + { +- mpfr_t x; ++ mpfr_t x, y; ++ int i, r; + + tests_start_mpfr (); + + mpfr_init2 (x, 256); ++ mpfr_init2 (y, 8); + +- /* Check NAN */ +- mpfr_set_nan (x); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR1; ++ RND_LOOP (r) ++ { + +- /* Check INF */ +- mpfr_set_inf (x, 1); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check NAN */ ++ mpfr_set_nan (x); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (1); ++ if (mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (2); ++ if (mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (3); ++ if (mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (4); ++ if (mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (5); ++ if (mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (6); + +- /* Check Zero */ +- MPFR_SET_ZERO (x); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check INF */ ++ mpfr_set_inf (x, 1); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (7); ++ if (mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (8); ++ if (mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (9); ++ if (mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (10); ++ if (mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (11); ++ if (mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (12); + +- /* Check small op */ +- mpfr_set_str1 (x, "1@-1"); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check Zero */ ++ MPFR_SET_ZERO (x); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (13); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (14); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (15); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (16); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (17); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (18); + +- /* Check 17 */ +- mpfr_set_ui (x, 17, MPFR_RNDN); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check small positive op */ ++ mpfr_set_str1 (x, "1@-1"); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (19); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (20); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (21); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (22); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (23); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (24); + +- /* Check all other values */ +- mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); +- mpfr_mul_2exp (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR1; +- mpfr_mul_2exp (x, x, 40, MPFR_RNDN); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check 17 */ ++ mpfr_set_ui (x, 17, MPFR_RNDN); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (25); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (26); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (27); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (28); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (29); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (30); + +- mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, LONG_MAX, MPFR_RNDN); +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, UINT_MAX, MPFR_RNDN); +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, INT_MAX, MPFR_RNDN); +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, USHRT_MAX, MPFR_RNDN); +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, SHRT_MAX, MPFR_RNDN); +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check all other values */ ++ mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); ++ mpfr_mul_2exp (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (31); ++ if (mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (32); ++ mpfr_mul_2exp (x, x, 40, MPFR_RNDN); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (33); ++ if (mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (34); ++ if (mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (35); ++ if (mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (36); ++ if (mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (37); + +- mpfr_set_si (x, 1, MPFR_RNDN); +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (38); ++ mpfr_set_ui (x, LONG_MAX, MPFR_RNDN); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (39); ++ mpfr_set_ui (x, UINT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (40); ++ mpfr_set_ui (x, INT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (41); ++ mpfr_set_ui (x, USHRT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (42); ++ mpfr_set_ui (x, SHRT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (43); + +- /* Check negative value */ +- mpfr_set_si (x, -1, MPFR_RNDN); +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; ++ mpfr_set_si (x, 1, MPFR_RNDN); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (44); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (45); ++ ++ /* Check negative op */ ++ for (i = 1; i <= 4; i++) ++ { ++ int inv; ++ ++ mpfr_set_si_2exp (x, -i, -2, MPFR_RNDN); ++ mpfr_rint (y, x, (mpfr_rnd_t) r); ++ inv = MPFR_NOTZERO (y); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (46); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (47); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (48); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (49); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (50); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (51); ++ } ++ } + + mpfr_clear (x); ++ mpfr_clear (y); + + check_intmax (); + +@@ -189,85 +210,98 @@ + return 0; + } + +-static void check_intmax (void) ++static void ++check_intmax (void) + { + #ifdef _MPFR_H_HAVE_INTMAX_T +- mpfr_t x; ++ mpfr_t x, y; ++ int i, r; + +- mpfr_init2 (x, sizeof (uintmax_t)*CHAR_BIT); ++ mpfr_init2 (x, sizeof (uintmax_t) * CHAR_BIT); ++ mpfr_init2 (y, 8); + +- /* Check NAN */ +- mpfr_set_nan (x); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ RND_LOOP (r) ++ { ++ /* Check NAN */ ++ mpfr_set_nan (x); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (52); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (53); + +- /* Check INF */ +- mpfr_set_inf (x, 1); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check INF */ ++ mpfr_set_inf (x, 1); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (54); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (55); + +- /* Check Zero */ +- MPFR_SET_ZERO (x); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check Zero */ ++ MPFR_SET_ZERO (x); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (56); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (57); + +- /* Check small op */ +- mpfr_set_str1 (x, "1@-1"); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check positive small op */ ++ mpfr_set_str1 (x, "1@-1"); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (58); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (59); + +- /* Check 17 */ +- mpfr_set_ui (x, 17, MPFR_RNDN); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check 17 */ ++ mpfr_set_ui (x, 17, MPFR_RNDN); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (60); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (61); + +- /* Check hugest */ +- mpfr_set_ui_2exp (x, 42, sizeof (uintmax_t) * 32, MPFR_RNDN); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check hugest */ ++ mpfr_set_ui_2exp (x, 42, sizeof (uintmax_t) * 32, MPFR_RNDN); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (62); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (63); + +- /* Check all other values */ +- mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); +- mpfr_add_ui (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); +- mpfr_add_ui (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; +- mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_sj (x, MPFR_INTMAX_MIN, MPFR_RNDN); +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_sub_ui (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check all other values */ ++ mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); ++ mpfr_add_ui (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (64); ++ mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (65); ++ mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); ++ mpfr_add_ui (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (66); ++ mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (67); ++ mpfr_set_sj (x, MPFR_INTMAX_MIN, MPFR_RNDN); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (68); ++ mpfr_sub_ui (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (69); + +- /* Check negative value */ +- mpfr_set_si (x, -1, MPFR_RNDN); +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check negative op */ ++ for (i = 1; i <= 4; i++) ++ { ++ int inv; ++ ++ mpfr_set_si_2exp (x, -i, -2, MPFR_RNDN); ++ mpfr_rint (y, x, (mpfr_rnd_t) r); ++ inv = MPFR_NOTZERO (y); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (70); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (71); ++ } ++ } + + mpfr_clear (x); ++ mpfr_clear (y); + #endif + } +- +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-10-09 13:34:21.000000000 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-10-09 13:34:21.000000000 +0000 +@@ -0,0 +1 @@ ++clang-divby0 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-10-09 13:34:21.000000000 +0000 +@@ -1 +1 @@ +-3.1.2-p2 ++3.1.2-p3 +diff -Naurd mpfr-3.1.2-a/src/mpfr-impl.h mpfr-3.1.2-b/src/mpfr-impl.h +--- mpfr-3.1.2-a/src/mpfr-impl.h 2013-03-13 15:37:36.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr-impl.h 2013-10-09 13:34:21.000000000 +0000 +@@ -468,8 +468,16 @@ + #define MPFR_LIMBS_PER_FLT ((IEEE_FLT_MANT_DIG-1)/GMP_NUMB_BITS+1) + + /* Visual C++ doesn't support +1.0/0.0, -1.0/0.0 and 0.0/0.0 +- at compile time. */ +-#if defined(_MSC_VER) && defined(_WIN32) && (_MSC_VER >= 1200) ++ at compile time. ++ Clang with -fsanitize=undefined is a bit similar due to a bug: ++ http://llvm.org/bugs/show_bug.cgi?id=17381 ++ but even without its sanitizer, it may be better to use the ++ double_zero version until IEEE 754 division by zero is properly ++ supported: ++ http://llvm.org/bugs/show_bug.cgi?id=17000 ++*/ ++#if (defined(_MSC_VER) && defined(_WIN32) && (_MSC_VER >= 1200)) || \ ++ defined(__clang__) + static double double_zero = 0.0; + # define DBL_NAN (double_zero/double_zero) + # define DBL_POS_INF ((double) 1.0/double_zero) +@@ -501,6 +509,8 @@ + (with Xcode 2.4.1, i.e. the latest one). */ + #define LVALUE(x) (&(x) == &(x) || &(x) != &(x)) + #define DOUBLE_ISINF(x) (LVALUE(x) && ((x) > DBL_MAX || (x) < -DBL_MAX)) ++/* The DOUBLE_ISNAN(x) macro is also valid on long double x ++ (assuming that the compiler isn't too broken). */ + #ifdef MPFR_NANISNAN + /* Avoid MIPSpro / IRIX64 / gcc -ffast-math (incorrect) optimizations. + The + must not be replaced by a ||. With gcc -ffast-math, NaN is +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-10-09 13:34:21.000000000 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p2" ++#define MPFR_VERSION_STRING "3.1.2-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-10-09 13:34:21.000000000 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p2"; ++ return "3.1.2-p3"; + } +diff -Naurd mpfr-3.1.2-a/tests/tget_flt.c mpfr-3.1.2-b/tests/tget_flt.c +--- mpfr-3.1.2-a/tests/tget_flt.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tget_flt.c 2013-10-09 13:34:21.000000000 +0000 +@@ -28,9 +28,17 @@ + main (void) + { + mpfr_t x, y; +- float f, g, infp; ++ float f, g; + int i; ++#if !defined(MPFR_ERRDIVZERO) ++ float infp; ++#endif ++ ++ tests_start_mpfr (); + ++#if !defined(MPFR_ERRDIVZERO) ++ /* The definition of DBL_POS_INF involves a division by 0. This makes ++ "clang -O2 -fsanitize=undefined -fno-sanitize-recover" fail. */ + infp = (float) DBL_POS_INF; + if (infp * 0.5 != infp) + { +@@ -38,8 +46,7 @@ + fprintf (stderr, "(this is probably a compiler bug, please report)\n"); + exit (1); + } +- +- tests_start_mpfr (); ++#endif + + mpfr_init2 (x, 24); + mpfr_init2 (y, 24); +@@ -353,6 +360,7 @@ + printf ("expected %.8e, got %.8e\n", g, f); + exit (1); + } ++#if !defined(MPFR_ERRDIVZERO) + f = mpfr_get_flt (x, MPFR_RNDN); /* first round to 2^128 (even rule), + thus we should get +Inf */ + g = infp; +@@ -376,6 +384,7 @@ + printf ("expected %.8e, got %.8e\n", g, f); + exit (1); + } ++#endif + + mpfr_clear (x); + mpfr_clear (y); +diff -Naurd mpfr-3.1.2-a/tests/tset_ld.c mpfr-3.1.2-b/tests/tset_ld.c +--- mpfr-3.1.2-a/tests/tset_ld.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tset_ld.c 2013-10-09 13:34:21.000000000 +0000 +@@ -47,8 +47,11 @@ + static int + Isnan_ld (long double d) + { +- double e = (double) d; +- if (DOUBLE_ISNAN (e)) ++ /* Do not convert d to double as this can give an overflow, which ++ may confuse compilers without IEEE 754 support (such as clang ++ -fsanitize=undefined), or trigger a trap if enabled. ++ The DOUBLE_ISNAN macro should work fine on long double. */ ++ if (DOUBLE_ISNAN (d)) + return 1; + LONGDOUBLE_NAN_ACTION (d, goto yes); + return 0; +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-11-15 00:51:49.323334999 +0000 +@@ -0,0 +1 @@ ++printf-alt0 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-11-15 00:51:49.323334999 +0000 +@@ -1 +1 @@ +-3.1.2-p3 ++3.1.2-p4 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-11-15 00:51:49.323334999 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p3" ++#define MPFR_VERSION_STRING "3.1.2-p4" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/vasprintf.c mpfr-3.1.2-b/src/vasprintf.c +--- mpfr-3.1.2-a/src/vasprintf.c 2013-03-13 15:37:37.000000000 +0000 ++++ mpfr-3.1.2-b/src/vasprintf.c 2013-11-15 00:51:49.267334408 +0000 +@@ -1040,7 +1040,7 @@ + } + + /* Determine the different parts of the string representation of the regular +- number P when SPEC.SPEC is 'e', 'E', 'g', or 'G'. ++ number P when spec.spec is 'e', 'E', 'g', or 'G'. + DEC_INFO contains the previously computed exponent and string or is NULL. + + return -1 if some field > INT_MAX */ +@@ -1167,7 +1167,7 @@ + } + + /* Determine the different parts of the string representation of the regular +- number P when SPEC.SPEC is 'f', 'F', 'g', or 'G'. ++ number P when spec.spec is 'f', 'F', 'g', or 'G'. + DEC_INFO contains the previously computed exponent and string or is NULL. + + return -1 if some field of number_parts is greater than INT_MAX */ +@@ -1559,7 +1559,7 @@ + /* fractional part */ + { + np->point = MPFR_DECIMAL_POINT; +- np->fp_trailing_zeros = (spec.spec == 'g' && spec.spec == 'G') ? ++ np->fp_trailing_zeros = (spec.spec == 'g' || spec.spec == 'G') ? + spec.prec - 1 : spec.prec; + } + else if (spec.alt) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-11-15 00:51:49.323334999 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p3"; ++ return "3.1.2-p4"; + } +diff -Naurd mpfr-3.1.2-a/tests/tsprintf.c mpfr-3.1.2-b/tests/tsprintf.c +--- mpfr-3.1.2-a/tests/tsprintf.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tsprintf.c 2013-11-15 00:51:49.267334408 +0000 +@@ -456,10 +456,16 @@ + check_sprintf ("1.999900 ", "%-#10.7RG", x); + check_sprintf ("1.9999 ", "%-10.7RG", x); + mpfr_set_ui (x, 1, MPFR_RNDN); ++ check_sprintf ("1.", "%#.1Rg", x); ++ check_sprintf ("1. ", "%-#5.1Rg", x); ++ check_sprintf (" 1.0", "%#5.2Rg", x); + check_sprintf ("1.00000000000000000000000000000", "%#.30Rg", x); + check_sprintf ("1", "%.30Rg", x); + mpfr_set_ui (x, 0, MPFR_RNDN); +- check_sprintf ("0.000000000000000000000000000000", "%#.30Rg", x); ++ check_sprintf ("0.", "%#.1Rg", x); ++ check_sprintf ("0. ", "%-#5.1Rg", x); ++ check_sprintf (" 0.0", "%#5.2Rg", x); ++ check_sprintf ("0.00000000000000000000000000000", "%#.30Rg", x); + check_sprintf ("0", "%.30Rg", x); + + /* following tests with precision 53 bits */ +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-12-01 11:07:49.575329762 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-12-01 11:07:49.751331625 +0000 +@@ -0,0 +1 @@ ++custom_init_set +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-12-01 11:07:49.571329714 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-12-01 11:07:49.747331585 +0000 +@@ -1 +1 @@ +-3.1.2-p4 ++3.1.2-p5 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-12-01 11:07:49.571329714 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-12-01 11:07:49.747331585 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p4" ++#define MPFR_VERSION_STRING "3.1.2-p5" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +@@ -861,7 +861,7 @@ + _t = (mpfr_kind_t) _k; \ + _s = 1; \ + } else { \ +- _t = (mpfr_kind_t) -k; \ ++ _t = (mpfr_kind_t) - _k; \ + _s = -1; \ + } \ + _e = _t == MPFR_REGULAR_KIND ? (e) : \ +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-12-01 11:07:49.575329762 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-12-01 11:07:49.747331585 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p4"; ++ return "3.1.2-p5"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-04-15 21:56:49.697059857 +0000 +@@ -0,0 +1 @@ ++li2-return +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-04-15 21:56:49.697059857 +0000 +@@ -1 +1 @@ +-3.1.2-p5 ++3.1.2-p6 +diff -Naurd mpfr-3.1.2-a/src/li2.c mpfr-3.1.2-b/src/li2.c +--- mpfr-3.1.2-a/src/li2.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/li2.c 2014-04-15 21:56:49.653058661 +0000 +@@ -630,5 +630,5 @@ + return mpfr_check_range (y, inexact, rnd_mode); + } + +- MPFR_ASSERTN (0); /* should never reach this point */ ++ MPFR_RET_NEVER_GO_HERE (); + } +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-04-15 21:56:49.697059857 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p5" ++#define MPFR_VERSION_STRING "3.1.2-p6" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-04-15 21:56:49.697059857 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p5"; ++ return "3.1.2-p6"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-04-15 22:04:57.090286262 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-04-15 22:04:57.162288198 +0000 +@@ -0,0 +1 @@ ++exp3 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-04-15 22:04:57.086286154 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-04-15 22:04:57.162288198 +0000 +@@ -1 +1 @@ +-3.1.2-p6 ++3.1.2-p7 +diff -Naurd mpfr-3.1.2-a/src/exp3.c mpfr-3.1.2-b/src/exp3.c +--- mpfr-3.1.2-a/src/exp3.c 2013-03-13 15:37:34.000000000 +0000 ++++ mpfr-3.1.2-b/src/exp3.c 2014-04-15 22:04:57.126287230 +0000 +@@ -283,7 +283,7 @@ + } + } + +- if (mpfr_can_round (shift_x > 0 ? t : tmp, realprec, MPFR_RNDD, MPFR_RNDZ, ++ if (mpfr_can_round (shift_x > 0 ? t : tmp, realprec, MPFR_RNDN, MPFR_RNDZ, + MPFR_PREC(y) + (rnd_mode == MPFR_RNDN))) + { + inexact = mpfr_set (y, shift_x > 0 ? t : tmp, rnd_mode); +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-04-15 22:04:57.086286154 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-04-15 22:04:57.162288198 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p6" ++#define MPFR_VERSION_STRING "3.1.2-p7" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-04-15 22:04:57.090286262 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-04-15 22:04:57.162288198 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p6"; ++ return "3.1.2-p7"; + } +diff -Naurd mpfr-3.1.2-a/tests/texp.c mpfr-3.1.2-b/tests/texp.c +--- mpfr-3.1.2-a/tests/texp.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/texp.c 2014-04-15 22:04:57.126287230 +0000 +@@ -150,6 +150,22 @@ + exit (1); + } + ++ mpfr_set_prec (x, 118); ++ mpfr_set_str_binary (x, "0.1110010100011101010000111110011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000E-86"); ++ mpfr_set_prec (y, 118); ++ mpfr_exp_2 (y, x, MPFR_RNDU); ++ mpfr_exp_3 (x, x, MPFR_RNDU); ++ if (mpfr_cmp (x, y)) ++ { ++ printf ("mpfr_exp_2 and mpfr_exp_3 differ for prec=118\n"); ++ printf ("mpfr_exp_2 gives "); ++ mpfr_out_str (stdout, 2, 0, y, MPFR_RNDN); ++ printf ("\nmpfr_exp_3 gives "); ++ mpfr_out_str (stdout, 2, 0, x, MPFR_RNDN); ++ printf ("\n"); ++ exit (1); ++ } ++ + mpfr_clear (x); + mpfr_clear (y); + return 0; +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-04-15 22:20:32.243481506 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-04-15 22:22:32.418722707 +0000 +@@ -0,0 +1 @@ ++gmp6-compat +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-04-15 22:20:20.755171478 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-04-15 22:21:45.225450147 +0000 +@@ -1 +1 @@ +-3.1.2-p7 ++3.1.2-p8 +diff -Naurd mpfr-3.1.2-a/configure mpfr-3.1.2-b/configure +--- mpfr-3.1.2-a/configure 2013-03-13 15:38:20.000000000 +0000 ++++ mpfr-3.1.2-b/configure 2014-04-15 22:21:38.821277476 +0000 +@@ -14545,26 +14545,30 @@ + rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + fi + +-if test "$use_gmp_build" = yes ; then +- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for valid GMP_NUMB_BITS" >&5 +-$as_echo_n "checking for valid GMP_NUMB_BITS... " >&6; } +- if test "$cross_compiling" = yes; then : ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency" >&5 ++$as_echo_n "checking for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency... " >&6; } ++if test "$cross_compiling" = yes; then : + { $as_echo "$as_me:${as_lineno-$LINENO}: result: can't test" >&5 + $as_echo "can't test" >&6; } + else + cat confdefs.h - <<_ACEOF >conftest.$ac_ext + /* end confdefs.h. */ + ++#include + #include + #include "gmp.h" +-#include "gmp-impl.h" + + int + main () + { + +- return GMP_NUMB_BITS == BYTES_PER_MP_LIMB * CHAR_BIT +- && sizeof(mp_limb_t) == BYTES_PER_MP_LIMB ? 0 : 1; ++ if (GMP_NUMB_BITS == sizeof(mp_limb_t) * CHAR_BIT) ++ return 0; ++ fprintf (stderr, "GMP_NUMB_BITS = %ld\n", (long) GMP_NUMB_BITS); ++ fprintf (stderr, "sizeof(mp_limb_t) = %ld\n", (long) sizeof(mp_limb_t)); ++ fprintf (stderr, "sizeof(mp_limb_t) * CHAR_BIT = %ld != GMP_NUMB_BITS\n", ++ (long) (sizeof(mp_limb_t) * CHAR_BIT)); ++ return 1; + + ; + return 0; +@@ -14577,14 +14581,14 @@ + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 + $as_echo "no" >&6; } +- as_fn_error $? "GMP_NUMB_BITS is incorrect. +-You probably need to change some of the GMP or MPFR compile options." "$LINENO" 5 ++ as_fn_error $? "GMP_NUMB_BITS and sizeof(mp_limb_t) are not consistent. ++You probably need to change some of the GMP or MPFR compile options. ++See 'config.log' for details (search for GMP_NUMB_BITS)." "$LINENO" 5 + fi + rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ + conftest.$ac_objext conftest.beam conftest.$ac_ext + fi + +-fi + + + if test "$dont_link_with_gmp" = yes ; then +diff -Naurd mpfr-3.1.2-a/configure.ac mpfr-3.1.2-b/configure.ac +--- mpfr-3.1.2-a/configure.ac 2013-03-13 15:37:46.000000000 +0000 ++++ mpfr-3.1.2-b/configure.ac 2013-03-13 15:37:46.000000000 +0000 +@@ -435,23 +435,29 @@ + ]) + fi + +-dnl Check for valid GMP_NUMB_BITS and BYTES_PER_MP_LIMB ++dnl Check for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency. ++dnl Problems may occur if gmp.h was generated with some ABI ++dnl and is used with another ABI (or if nails are used). + dnl This test doesn't need to link with libgmp (at least it shouldn't). +-if test "$use_gmp_build" = yes ; then +- AC_MSG_CHECKING(for valid GMP_NUMB_BITS) +- AC_RUN_IFELSE([AC_LANG_PROGRAM([[ ++AC_MSG_CHECKING(for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency) ++AC_RUN_IFELSE([AC_LANG_PROGRAM([[ ++#include + #include + #include "gmp.h" +-#include "gmp-impl.h" + ]], [[ +- return GMP_NUMB_BITS == BYTES_PER_MP_LIMB * CHAR_BIT +- && sizeof(mp_limb_t) == BYTES_PER_MP_LIMB ? 0 : 1; ++ if (GMP_NUMB_BITS == sizeof(mp_limb_t) * CHAR_BIT) ++ return 0; ++ fprintf (stderr, "GMP_NUMB_BITS = %ld\n", (long) GMP_NUMB_BITS); ++ fprintf (stderr, "sizeof(mp_limb_t) = %ld\n", (long) sizeof(mp_limb_t)); ++ fprintf (stderr, "sizeof(mp_limb_t) * CHAR_BIT = %ld != GMP_NUMB_BITS\n", ++ (long) (sizeof(mp_limb_t) * CHAR_BIT)); ++ return 1; + ]])], [AC_MSG_RESULT(yes)], [ + AC_MSG_RESULT(no) +- AC_MSG_ERROR([GMP_NUMB_BITS is incorrect. +-You probably need to change some of the GMP or MPFR compile options.])], ++ AC_MSG_ERROR([GMP_NUMB_BITS and sizeof(mp_limb_t) are not consistent. ++You probably need to change some of the GMP or MPFR compile options. ++See 'config.log' for details (search for GMP_NUMB_BITS).])], + [AC_MSG_RESULT([can't test])]) +-fi + + + dnl We really need to link using libtool. But it is impossible with the current +diff -Naurd mpfr-3.1.2-a/src/init2.c mpfr-3.1.2-b/src/init2.c +--- mpfr-3.1.2-a/src/init2.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/init2.c 2014-04-15 22:21:06.220398489 +0000 +@@ -30,11 +30,11 @@ + + /* Check if we can represent the number of limbs + * associated to the maximum of mpfr_prec_t*/ +- MPFR_ASSERTN( MP_SIZE_T_MAX >= (MPFR_PREC_MAX/BYTES_PER_MP_LIMB) ); ++ MPFR_ASSERTN( MP_SIZE_T_MAX >= (MPFR_PREC_MAX/MPFR_BYTES_PER_MP_LIMB) ); + +- /* Check for correct GMP_NUMB_BITS and BYTES_PER_MP_LIMB */ +- MPFR_ASSERTN( GMP_NUMB_BITS == BYTES_PER_MP_LIMB * CHAR_BIT +- && sizeof(mp_limb_t) == BYTES_PER_MP_LIMB ); ++ /* Check for correct GMP_NUMB_BITS and MPFR_BYTES_PER_MP_LIMB */ ++ MPFR_ASSERTN( GMP_NUMB_BITS == MPFR_BYTES_PER_MP_LIMB * CHAR_BIT ++ && sizeof(mp_limb_t) == MPFR_BYTES_PER_MP_LIMB ); + + MPFR_ASSERTN (mp_bits_per_limb == GMP_NUMB_BITS); + +diff -Naurd mpfr-3.1.2-a/src/mpfr-gmp.h mpfr-3.1.2-b/src/mpfr-gmp.h +--- mpfr-3.1.2-a/src/mpfr-gmp.h 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr-gmp.h 2014-04-15 22:21:06.220398489 +0000 +@@ -72,7 +72,6 @@ + #endif + + /* Define some macros */ +-#define BYTES_PER_MP_LIMB (GMP_NUMB_BITS/CHAR_BIT) + + #define MP_LIMB_T_MAX (~(mp_limb_t)0) + +@@ -96,19 +95,19 @@ + #define SHRT_HIGHBIT SHRT_MIN + + /* MP_LIMB macros */ +-#define MPN_ZERO(dst, n) memset((dst), 0, (n)*BYTES_PER_MP_LIMB) +-#define MPN_COPY_DECR(dst,src,n) memmove((dst),(src),(n)*BYTES_PER_MP_LIMB) +-#define MPN_COPY_INCR(dst,src,n) memmove((dst),(src),(n)*BYTES_PER_MP_LIMB) ++#define MPN_ZERO(dst, n) memset((dst), 0, (n)*MPFR_BYTES_PER_MP_LIMB) ++#define MPN_COPY_DECR(dst,src,n) memmove((dst),(src),(n)*MPFR_BYTES_PER_MP_LIMB) ++#define MPN_COPY_INCR(dst,src,n) memmove((dst),(src),(n)*MPFR_BYTES_PER_MP_LIMB) + #define MPN_COPY(dst,src,n) \ + do \ + { \ + if ((dst) != (src)) \ + { \ + MPFR_ASSERTD ((char *) (dst) >= (char *) (src) + \ +- (n) * BYTES_PER_MP_LIMB || \ ++ (n) * MPFR_BYTES_PER_MP_LIMB || \ + (char *) (src) >= (char *) (dst) + \ +- (n) * BYTES_PER_MP_LIMB); \ +- memcpy ((dst), (src), (n) * BYTES_PER_MP_LIMB); \ ++ (n) * MPFR_BYTES_PER_MP_LIMB); \ ++ memcpy ((dst), (src), (n) * MPFR_BYTES_PER_MP_LIMB); \ + } \ + } \ + while (0) +diff -Naurd mpfr-3.1.2-a/src/mpfr-impl.h mpfr-3.1.2-b/src/mpfr-impl.h +--- mpfr-3.1.2-a/src/mpfr-impl.h 2013-10-09 13:34:21.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr-impl.h 2014-04-15 22:21:06.220398489 +0000 +@@ -191,7 +191,7 @@ + # endif + #endif + +- ++#define MPFR_BYTES_PER_MP_LIMB (GMP_NUMB_BITS/CHAR_BIT) + + /****************************************************** + ******************** Check GMP *********************** +@@ -930,7 +930,7 @@ + #define MPFR_SET_ALLOC_SIZE(x, n) \ + ( ((mp_size_t*) MPFR_MANT(x))[-1] = n) + #define MPFR_MALLOC_SIZE(s) \ +- ( sizeof(mpfr_size_limb_t) + BYTES_PER_MP_LIMB * ((size_t) s) ) ++ ( sizeof(mpfr_size_limb_t) + MPFR_BYTES_PER_MP_LIMB * ((size_t) s) ) + #define MPFR_SET_MANT_PTR(x,p) \ + (MPFR_MANT(x) = (mp_limb_t*) ((mpfr_size_limb_t*) p + 1)) + #define MPFR_GET_REAL_PTR(x) \ +@@ -964,7 +964,7 @@ + #endif + + #define MPFR_TMP_LIMBS_ALLOC(N) \ +- ((mp_limb_t *) MPFR_TMP_ALLOC ((size_t) (N) * BYTES_PER_MP_LIMB)) ++ ((mp_limb_t *) MPFR_TMP_ALLOC ((size_t) (N) * MPFR_BYTES_PER_MP_LIMB)) + + /* temporary allocate 1 limb at xp, and initialize mpfr variable x */ + /* The temporary var doesn't have any size field, but it doesn't matter +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-04-15 22:20:20.755171478 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-04-15 22:21:45.225450147 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p7" ++#define MPFR_VERSION_STRING "3.1.2-p8" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/mul.c mpfr-3.1.2-b/src/mul.c +--- mpfr-3.1.2-a/src/mul.c 2013-03-13 15:37:37.000000000 +0000 ++++ mpfr-3.1.2-b/src/mul.c 2014-04-15 22:21:06.224398597 +0000 +@@ -106,7 +106,7 @@ + MPFR_ASSERTD(tn <= k); + + /* Check for no size_t overflow*/ +- MPFR_ASSERTD((size_t) k <= ((size_t) -1) / BYTES_PER_MP_LIMB); ++ MPFR_ASSERTD((size_t) k <= ((size_t) -1) / MPFR_BYTES_PER_MP_LIMB); + MPFR_TMP_MARK(marker); + tmp = MPFR_TMP_LIMBS_ALLOC (k); + +@@ -301,7 +301,7 @@ + MPFR_ASSERTD (tn <= k); /* tn <= k, thus no int overflow */ + + /* Check for no size_t overflow*/ +- MPFR_ASSERTD ((size_t) k <= ((size_t) -1) / BYTES_PER_MP_LIMB); ++ MPFR_ASSERTD ((size_t) k <= ((size_t) -1) / MPFR_BYTES_PER_MP_LIMB); + MPFR_TMP_MARK (marker); + tmp = MPFR_TMP_LIMBS_ALLOC (k); + +diff -Naurd mpfr-3.1.2-a/src/stack_interface.c mpfr-3.1.2-b/src/stack_interface.c +--- mpfr-3.1.2-a/src/stack_interface.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/stack_interface.c 2014-04-15 22:21:06.220398489 +0000 +@@ -26,7 +26,7 @@ + size_t + mpfr_custom_get_size (mpfr_prec_t prec) + { +- return MPFR_PREC2LIMBS (prec) * BYTES_PER_MP_LIMB; ++ return MPFR_PREC2LIMBS (prec) * MPFR_BYTES_PER_MP_LIMB; + } + + #undef mpfr_custom_init +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-04-15 22:20:20.755171478 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-04-15 22:21:45.225450147 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p7"; ++ return "3.1.2-p8"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-06-30 15:15:25.533266905 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-06-30 15:15:25.617269178 +0000 +@@ -0,0 +1 @@ ++div-overflow +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-06-30 15:15:25.529266797 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-06-30 15:15:25.617269178 +0000 +@@ -1 +1 @@ +-3.1.2-p8 ++3.1.2-p9 +diff -Naurd mpfr-3.1.2-a/src/div.c mpfr-3.1.2-b/src/div.c +--- mpfr-3.1.2-a/src/div.c 2013-03-13 15:37:33.000000000 +0000 ++++ mpfr-3.1.2-b/src/div.c 2014-06-30 15:15:25.585268312 +0000 +@@ -750,7 +750,9 @@ + truncate_check_qh: + if (qh) + { +- qexp ++; ++ if (MPFR_LIKELY (qexp < MPFR_EXP_MAX)) ++ qexp ++; ++ /* else qexp is now incorrect, but one will still get an overflow */ + q0p[q0size - 1] = MPFR_LIMB_HIGHBIT; + } + goto truncate; +@@ -765,7 +767,9 @@ + inex = 1; /* always here */ + if (mpn_add_1 (q0p, q0p, q0size, MPFR_LIMB_ONE << sh)) + { +- qexp ++; ++ if (MPFR_LIKELY (qexp < MPFR_EXP_MAX)) ++ qexp ++; ++ /* else qexp is now incorrect, but one will still get an overflow */ + q0p[q0size - 1] = MPFR_LIMB_HIGHBIT; + } + +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-06-30 15:15:25.533266905 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-06-30 15:15:25.613269070 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p8" ++#define MPFR_VERSION_STRING "3.1.2-p9" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-06-30 15:15:25.533266905 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-06-30 15:15:25.613269070 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p8"; ++ return "3.1.2-p9"; + } +diff -Naurd mpfr-3.1.2-a/tests/tdiv.c mpfr-3.1.2-b/tests/tdiv.c +--- mpfr-3.1.2-a/tests/tdiv.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tdiv.c 2014-06-30 15:15:25.585268312 +0000 +@@ -1104,6 +1104,96 @@ + #define RAND_FUNCTION(x) mpfr_random2(x, MPFR_LIMB_SIZE (x), randlimb () % 100, RANDS) + #include "tgeneric.c" + ++static void ++test_extreme (void) ++{ ++ mpfr_t x, y, z; ++ mpfr_exp_t emin, emax; ++ mpfr_prec_t p[4] = { 8, 32, 64, 256 }; ++ int xi, yi, zi, j, r; ++ unsigned int flags, ex_flags; ++ ++ emin = mpfr_get_emin (); ++ emax = mpfr_get_emax (); ++ ++ mpfr_set_emin (MPFR_EMIN_MIN); ++ mpfr_set_emax (MPFR_EMAX_MAX); ++ ++ for (xi = 0; xi < 4; xi++) ++ { ++ mpfr_init2 (x, p[xi]); ++ mpfr_setmax (x, MPFR_EMAX_MAX); ++ MPFR_ASSERTN (mpfr_check (x)); ++ for (yi = 0; yi < 4; yi++) ++ { ++ mpfr_init2 (y, p[yi]); ++ mpfr_setmin (y, MPFR_EMIN_MIN); ++ for (j = 0; j < 2; j++) ++ { ++ MPFR_ASSERTN (mpfr_check (y)); ++ for (zi = 0; zi < 4; zi++) ++ { ++ mpfr_init2 (z, p[zi]); ++ RND_LOOP (r) ++ { ++ mpfr_clear_flags (); ++ mpfr_div (z, x, y, (mpfr_rnd_t) r); ++ flags = __gmpfr_flags; ++ MPFR_ASSERTN (mpfr_check (z)); ++ ex_flags = MPFR_FLAGS_OVERFLOW | MPFR_FLAGS_INEXACT; ++ if (flags != ex_flags) ++ { ++ printf ("Bad flags in test_extreme on z = a/b" ++ " with %s and\n", ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r)); ++ printf ("a = "); ++ mpfr_dump (x); ++ printf ("b = "); ++ mpfr_dump (y); ++ printf ("Expected flags:"); ++ flags_out (ex_flags); ++ printf ("Got flags: "); ++ flags_out (flags); ++ printf ("z = "); ++ mpfr_dump (z); ++ exit (1); ++ } ++ mpfr_clear_flags (); ++ mpfr_div (z, y, x, (mpfr_rnd_t) r); ++ flags = __gmpfr_flags; ++ MPFR_ASSERTN (mpfr_check (z)); ++ ex_flags = MPFR_FLAGS_UNDERFLOW | MPFR_FLAGS_INEXACT; ++ if (flags != ex_flags) ++ { ++ printf ("Bad flags in test_extreme on z = a/b" ++ " with %s and\n", ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r)); ++ printf ("a = "); ++ mpfr_dump (y); ++ printf ("b = "); ++ mpfr_dump (x); ++ printf ("Expected flags:"); ++ flags_out (ex_flags); ++ printf ("Got flags: "); ++ flags_out (flags); ++ printf ("z = "); ++ mpfr_dump (z); ++ exit (1); ++ } ++ } ++ mpfr_clear (z); ++ } /* zi */ ++ mpfr_nextabove (y); ++ } /* j */ ++ mpfr_clear (y); ++ } /* yi */ ++ mpfr_clear (x); ++ } /* xi */ ++ ++ set_emin (emin); ++ set_emax (emax); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -1130,6 +1220,7 @@ + test_20070603 (); + test_20070628 (); + test_generic (2, 800, 50); ++ test_extreme (); + + tests_end_mpfr (); + return 0; +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-06-30 15:17:53.417270314 +0000 +@@ -0,0 +1 @@ ++vasprintf +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-06-30 15:17:53.413270206 +0000 +@@ -1 +1 @@ +-3.1.2-p9 ++3.1.2-p10 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-06-30 15:17:53.413270206 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p9" ++#define MPFR_VERSION_STRING "3.1.2-p10" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/vasprintf.c mpfr-3.1.2-b/src/vasprintf.c +--- mpfr-3.1.2-a/src/vasprintf.c 2013-11-15 00:51:49.267334408 +0000 ++++ mpfr-3.1.2-b/src/vasprintf.c 2014-06-30 15:17:53.377269231 +0000 +@@ -884,14 +884,18 @@ + first digit, we want the exponent for radix two and the decimal + point AFTER the first digit. */ + { +- MPFR_ASSERTN (exp > MPFR_EMIN_MIN /4); /* possible overflow */ ++ /* An integer overflow is normally not possible since MPFR_EXP_MIN ++ is twice as large as MPFR_EMIN_MIN. */ ++ MPFR_ASSERTN (exp > (MPFR_EXP_MIN + 3) / 4); + exp = (exp - 1) * 4; + } + else + /* EXP is the exponent for decimal point BEFORE the first digit, we + want the exponent for decimal point AFTER the first digit. */ + { +- MPFR_ASSERTN (exp > MPFR_EMIN_MIN); /* possible overflow */ ++ /* An integer overflow is normally not possible since MPFR_EXP_MIN ++ is twice as large as MPFR_EMIN_MIN. */ ++ MPFR_ASSERTN (exp > MPFR_EXP_MIN); + --exp; + } + } +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-06-30 15:17:53.413270206 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p9"; ++ return "3.1.2-p10"; + } +diff -Naurd mpfr-3.1.2-a/tests/tsprintf.c mpfr-3.1.2-b/tests/tsprintf.c +--- mpfr-3.1.2-a/tests/tsprintf.c 2013-11-15 00:51:49.267334408 +0000 ++++ mpfr-3.1.2-b/tests/tsprintf.c 2014-06-30 15:17:53.377269231 +0000 +@@ -1184,6 +1184,69 @@ + check_emax_aux (MPFR_EMAX_MAX); + } + ++static void ++check_emin_aux (mpfr_exp_t e) ++{ ++ mpfr_t x; ++ char *s1, s2[256]; ++ int i; ++ mpfr_exp_t emin; ++ mpz_t ee; ++ ++ MPFR_ASSERTN (e >= LONG_MIN); ++ emin = mpfr_get_emin (); ++ set_emin (e); ++ ++ mpfr_init2 (x, 16); ++ mpz_init (ee); ++ ++ mpfr_setmin (x, e); ++ mpz_set_si (ee, e); ++ mpz_sub_ui (ee, ee, 1); ++ ++ i = mpfr_asprintf (&s1, "%Ra", x); ++ MPFR_ASSERTN (i > 0); ++ ++ gmp_snprintf (s2, 256, "0x1p%Zd", ee); ++ ++ if (strcmp (s1, s2) != 0) ++ { ++ printf ("Error in check_emin_aux for emin = %ld\n", (long) e); ++ printf ("Expected %s\n", s2); ++ printf ("Got %s\n", s1); ++ exit (1); ++ } ++ ++ mpfr_free_str (s1); ++ ++ i = mpfr_asprintf (&s1, "%Rb", x); ++ MPFR_ASSERTN (i > 0); ++ ++ gmp_snprintf (s2, 256, "1p%Zd", ee); ++ ++ if (strcmp (s1, s2) != 0) ++ { ++ printf ("Error in check_emin_aux for emin = %ld\n", (long) e); ++ printf ("Expected %s\n", s2); ++ printf ("Got %s\n", s1); ++ exit (1); ++ } ++ ++ mpfr_free_str (s1); ++ ++ mpfr_clear (x); ++ mpz_clear (ee); ++ set_emin (emin); ++} ++ ++static void ++check_emin (void) ++{ ++ check_emin_aux (-15); ++ check_emin_aux (mpfr_get_emin ()); ++ check_emin_aux (MPFR_EMIN_MIN); ++} ++ + int + main (int argc, char **argv) + { +@@ -1203,6 +1266,7 @@ + decimal (); + mixed (); + check_emax (); ++ check_emin (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + locale_da_DK (); diff --git a/easybuild/easyconfigs/g/GD/GD-2.52-ictce-5.5.0-Perl-5.18.2.eb b/easybuild/easyconfigs/g/GD/GD-2.52-ictce-5.5.0-Perl-5.18.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..020c907d43102350a0ef442374a0d58873cbff07 --- /dev/null +++ b/easybuild/easyconfigs/g/GD/GD-2.52-ictce-5.5.0-Perl-5.18.2.eb @@ -0,0 +1,25 @@ +easyblock = 'PerlModule' + +name = 'GD' +version = '2.52' + +homepage = 'http://search.cpan.org/~lds/GD/' +description = """GD.pm - Interface to Gd Graphics Library""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://cpan.metacpan.org/authors/id/L/LD/LDS/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.18.2' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('libgd', '2.1.0'), + ('libpng', '1.6.10'), + ('libjpeg-turbo', '1.3.1'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb index 62e541c4f980d9b0a321bb263bf3a30f41bb97b5..884cb408425bf49fe5c7c8d440d62f6c0c8470d7 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb index 8f1faabe9819267b63974d81e4d34fe53e6bceb9..9a0c3842fb8e3f8ef551049c9a646162a117c72a 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb index 3cbfbb519a8cd0ddd5be2bff4002c16352ee6636..eb57686131989ab9d73621a9eae8ee2383c568bb 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb index c0784ea6c9a17f432a37e19b761887566285b199..b400835265a463b58ba54ad949ebbfe69f022ca7 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index add5752ac7f7c3aa251089ce1d0a739c5e53c288..2278befdce0e5fbdd977372616faa3d8f1983508 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' @@ -31,6 +33,6 @@ sanity_check_paths = { # Clang has a different set of warnings on by default, so there are warnings # during the build. preconfigopts = 'ERROR_ON_WARNING=no' -premakeopts = 'ERROR_ON_WARNING=no' +prebuildopts = 'ERROR_ON_WARNING=no' moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index 1825890778a25bfbf0420c7f6937878f5b047d5c..7e35ed60fd80b1d607aa763938ecb5df96a1a611 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' @@ -31,6 +33,6 @@ sanity_check_paths = { # Clang has a different set of warnings on by default, so there are warnings # during the build. preconfigopts = 'ERROR_ON_WARNING=no' -premakeopts = 'ERROR_ON_WARNING=no' +prebuildopts = 'ERROR_ON_WARNING=no' moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index db088b8956f53bb9748b9e54535d8eba4f508bbd..5c2723f3cc6e7408e6319fa6056746cfd55ec7ca 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' @@ -31,6 +33,6 @@ sanity_check_paths = { # Clang has a different set of warnings on by default, so there are warnings # during the build. preconfigopts = 'ERROR_ON_WARNING=no' -premakeopts = 'ERROR_ON_WARNING=no' +prebuildopts = 'ERROR_ON_WARNING=no' moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index 14dca7818ed3d23d3f1ba97b69fee5d5e991b73e..a55ddb37800b97cc1fe5961d212f43453bbda4fd 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' @@ -31,6 +33,6 @@ sanity_check_paths = { # Clang has a different set of warnings on by default, so there are warnings # during the build. preconfigopts = 'ERROR_ON_WARNING=no' -premakeopts = 'ERROR_ON_WARNING=no' +prebuildopts = 'ERROR_ON_WARNING=no' moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index e54d658dee8dce58a18f9e90bf40e32e6101246d..5cb326d9c8ae384fe6e727e6d62b6e7f4e3b14b3 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index bb25a5e6214876e0b6a389f88d840d187c778da1..9a83935f73fe2ca8efce73b84d32fcbfcb70a1a9 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index 7814ec1eba5c0d8471b595f0055122d296c17125..e69629310c3990da3318282b19a57ed10df92b73 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index e2199ba07196899c77e38a46abcf3ef161b808c7..633ee3c7d8eb850ad5f036d4f2a001e5eff7d2e7 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb b/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c2447f730c4ab13688c772e4007d19ac0ae654cc --- /dev/null +++ b/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'GDB' +version = '7.8' + +homepage = 'http://www.gnu.org/software/gdb/gdb.html' +description = "The GNU Project Debugger" + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'intel', 'version': '2014b'} + +dependencies = [('ncurses', '5.9')] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/gdb', 'bin/gdbserver'], + 'dirs': [], +} + +moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..9044e641e1c28ebb091679e99c2768750d552da6 --- /dev/null +++ b/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'GDB' +version = '7.8.2' + +homepage = 'http://www.gnu.org/software/gdb/gdb.html' +description = "The GNU Project Debugger" + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [('ncurses', '5.9')] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/gdb', 'bin/gdbserver'], + 'dirs': [], +} + +moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..03a5996b54f0972943b6df495a498601c76c9195 --- /dev/null +++ b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb @@ -0,0 +1,45 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "MakeCp" + +name = 'GEM-library' +version = '20130406-045632' +versionsuffix = '_pre-release-3_Linux-x86_64' + +homepage = 'http://algorithms.cnag.cat/wiki/The_GEM_library' +description = """ Next-generation sequencing platforms (Illumina/Solexa, ABI/SOLiD, etc.) + call for powerful and very optimized tools to index/analyze huge genomes. The GEM library + strives to be a true "next-generation" tool for handling any kind of sequence data, offering + state-of-the-art algorithms and data structures specifically tailored to this demanding task. + At the moment, efficient indexing and searching algorithms based on the Burrows-Wheeler + transform (BWT) have been implemented. The library core is written in C for maximum speed, + with concise interfaces to higher-level programming languages like OCaml and Python. + Many high-performance standalone programs (mapper, splice mapper, etc.) are provided along + with the library; in general, new algorithms and tools can be easily implemented on the top of it. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [('http://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/', 'download')] +# core_i3 is the recommended version by developers. Better performance +sources = ['GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2'] +# if core_i3 version doesn't work for you, try core_2 version below +#sources = ['GEM-binaries-Linux-x86_64-core_2-20130406-045632.tbz2'] + +# only Linux_x86-64 binaries are provided so we skip build_step. +# We just use the MakeCp block to copy each file to the right destination folder (mainly the man files) +skipsteps = ['build'] + +# glob support in MakeCp easyblock is required so EasyBuild-1.12 or higher is required +easybuild_version = '1.12.0' + +files_to_copy = [ (["man/*"], 'man/man1/'), "bin" ] + +sanity_check_paths = { + 'files': ["bin/gem-indexer", "bin/gem-mapper", "bin/gem-rna-mapper"], + 'dirs': ["man"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..c3c35140d3581af65608af7a257085e67fe3e73d --- /dev/null +++ b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb @@ -0,0 +1,41 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'GEMSTAT' +version = '1.0' + +homepage = 'http://veda.cs.uiuc.edu/Seq2Expr/' +description = """ thermodynamics-based model to predict gene expression driven by any + DNA sequence, as a function of transcription factor concentrations and their DNA-binding + specificities. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://veda.cs.uiuc.edu/Seq2Expr/'] +sources = ['%(namelower)s.tar.gz'] + +dependencies = [('GSL', '1.16')] + +start_dir = "src" + +patches = ['Gemstat-missing-includes.patch'] + +parallel = 1 + +buildopts = ' GSL_DIR=$EBROOTGSL' + +files_to_copy = [ + (["seq2expr"], 'bin'), + "README.txt", "data" +] + +sanity_check_paths = { + 'files': ["bin/seq2expr", "README.txt"], + 'dirs': ["data"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GEMSTAT/Gemstat-missing-includes.patch b/easybuild/easyconfigs/g/GEMSTAT/Gemstat-missing-includes.patch new file mode 100644 index 0000000000000000000000000000000000000000..eaf441f24ad27ac9584026ee8ebb381c804cf14b --- /dev/null +++ b/easybuild/easyconfigs/g/GEMSTAT/Gemstat-missing-includes.patch @@ -0,0 +1,29 @@ +Only in gemstat/src: ExprPredictor.o +Only in gemstat/src: SeqAnnotator.o +diff -ru gemstat.orig/src/Tools.cpp gemstat/src/Tools.cpp +--- gemstat.orig/src/Tools.cpp 2010-07-21 17:28:01.000000000 +0200 ++++ gemstat/src/Tools.cpp 2014-05-06 18:29:58.764911840 +0200 +@@ -4,6 +4,8 @@ + + #include "Tools.h" + ++#include ++ + const log_add_table table( -10.0, 0, 500 ); // global variable + + // create a vector from gsl_vector +diff -ru gemstat.orig/src/Tools.h gemstat/src/Tools.h +--- gemstat.orig/src/Tools.h 2010-07-21 17:28:01.000000000 +0200 ++++ gemstat/src/Tools.h 2014-05-06 18:30:16.579034514 +0200 +@@ -25,6 +25,8 @@ + #include + #include + ++#include ++ + using namespace std; + + /* constants */ +Only in gemstat/src: Tools.o +Only in gemstat/src: seq2expr +Only in gemstat/src: seq2expr.o diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb index 2e8a84a64269087155c74be7349ea538910f76c4..ab3440a25ce5c9fc7337215b10ac65c93724bfda 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb index a3573d982cc22f2dfc3f144e50619190dc322bd3..28fdadb86f21637bbbe376228ca4f8a70e2b5d0a 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb index ebdfb8874ac5ad883dfbf940231d92f6999bba3f..0b85c86242d1769fca509d44146abdb85d23485e 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb index 04aa7021b88975be89caf8c2f17e1f58df83dd22..27b9e83b617856549292b1b8581e5f4adbf09d52 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb index 5c100c1d8310c91951b059bb60a49907cdacbb71..9a068844e14e2036d49aff7435213dee6a6d44bd 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb @@ -23,23 +23,11 @@ builddependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in - ['ghc', - 'ghc-7.6.2', - 'ghci', - 'ghci-7.6.2', - 'ghc-pkg', - 'ghc-pkg-7.6.2', - 'haddock', - 'haddock-ghc-7.6.2', - 'hp2ps', - 'hpc', - 'hsc2hs', - 'runghc', - 'runghc-7.6.2', - 'runhaskell']] + - [], - 'dirs':[] - } + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb index 1a4178063b379cbb4c870f93ceb7d0d1100e3692..36f3fcc67a3b3e96cc1a17aa4882aa8c57029de5 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb @@ -22,23 +22,11 @@ builddependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in - ['ghc', - 'ghc-7.6.2', - 'ghci', - 'ghci-7.6.2', - 'ghc-pkg', - 'ghc-pkg-7.6.2', - 'haddock', - 'haddock-ghc-7.6.2', - 'hp2ps', - 'hpc', - 'hsc2hs', - 'runghc', - 'runghc-7.6.2', - 'runhaskell']] + - [], - 'dirs':[] - } + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..8fecfa9a315f18c3f6eae1a266aa476ab7b67636 --- /dev/null +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb @@ -0,0 +1,32 @@ +name = 'GHC' +version = '7.8.3' + +homepage = 'http://www.haskell.org/ghc' +description = """GHC is the Glasgow Haskell Compiler.""" +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} + +sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] +source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] + +dependencies = [ + ('GMP', '5.0.5'), + ('zlib', '1.2.7'), + ('ncurses', '5.9'), +] + +builddependencies = [ + ('GHC', '7.4.2'), + ('libxslt', '1.1.28'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..ea5b087cdd48c2bf563eceb383606454e09ee947 --- /dev/null +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb @@ -0,0 +1,32 @@ +name = 'GHC' +version = '7.8.3' + +homepage = 'http://www.haskell.org/ghc' +description = """GHC is the Glasgow Haskell Compiler.""" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] +source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] + +dependencies = [ + ('GMP', '5.0.5'), + ('zlib', '1.2.7'), + ('ncurses', '5.9'), +] + +builddependencies = [ + ('GHC', '7.4.2'), + ('libxslt', '1.1.28'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb index 9a2ad9d9d216215f7df7cc2f7e7436b9e3228324..b6ac9d8f9f40a4e1baacf2880e6efa1012f69abc 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## @@ -30,7 +30,7 @@ patches = ['GIMPS-p95v279_linux64-makefile.patch'] start_dir = 'linux64' -makeopts = "-C ../gwnum -f make64 && make" +buildopts = "-C ../gwnum -f make64 && make" files_to_copy = [(['mprime'], 'bin')] diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb index 4226f86422eee4ed58a37d6e9e858a8d426ac13a..55fa61353fedc028662d277c3cb727e790c79cdf 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb index 761e0a8203bc9ff4b74e19398a6355fd59dfd07b..5079733d9193d893f3f46c7abbba36523960d250 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb @@ -20,7 +20,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://www.cbcb.umd.edu/software/glimmer'] sources = ['%%(namelower)s%s.tar.gz' % ''.join(version.split('.'))] -makeopts = '-C ./src' +buildopts = '-C ./src' files_to_copy = ["bin", "docs", "glim302notes.pdf", "lib", "LICENSE", "sample-run", "scripts"] diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb index 9d89ff341019564e9b6f9fd30259898e2a800acc..7722b501dd6818c69637546daf49b50bf248410f 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb @@ -20,7 +20,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://www.cbcb.umd.edu/software/glimmer'] sources = ['%%(namelower)s%s.tar.gz' % ''.join(version.split('.'))] -makeopts = '-C ./src' +buildopts = '-C ./src' files_to_copy = ["bin", "docs", "glim302notes.pdf", "lib", "LICENSE", "sample-run", "scripts"] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb index 7e1027f357e7044896c021d36396eb23b88e8122..afaaab1f33d255c4452951bd7a44ef7179ddc31d 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLPK' version = '4.48' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb index c44466fc3bc3f12bebbd8c12a25e7c1e91e0a4ae..4716a30ce5587a8a8cac05b8d8644e72519bfcb1 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLPK' version = '4.48' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9aae296531466e7d3d137618534241d1dbdd11e0 --- /dev/null +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'GLPK' +version = '4.53' + +homepage = 'http://www.gnu.org/software/glpk/' +description = """The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear +programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines +written in ANSI C and organized in the form of a callable library.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] + +dependencies = [ + ('GMP', '5.1.1'), +] + +configopts = "--with-gmp" + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..b55056667c6ae4bd4d5933ee55f8606b4126cacb --- /dev/null +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'GLPK' +version = '4.53' + +homepage = 'http://www.gnu.org/software/glpk/' +description = """The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear +programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines +written in ANSI C and organized in the form of a callable library.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] + +dependencies = [ + ('GMP', '5.1.1'), +] + +configopts = "--with-gmp" + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb index 45fb82af4ea86ecfa2e59791e257ba92b053c397..0154f92cba528050521a37cdb21f95890ce3a494 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb index e23ae02de750eef7bb7215e6943de1aaeedfb961..b3f747f733f335925a6a6f2af30fb76089a49cbc 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb index 5099cd7013a26b9f7dced10339587dfe630d9ddc..33fdefa087e38e14966a9e00032347d46128e81a 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb index 867c70b804aafa4bbf77f931b7b4c5225ac1c56e..fe8be618bce8d3997e2c546400313df6d866d808 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..524a65b421ff6852e8d3ba3d5346094f11eb0d60 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.5.14.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.34.3' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.0.13'), + ('gettext', '0.18.2'), +] +builddependencies = [('Python', '2.7.3')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb index e63e6d5920eb0f76bfcd0e3eb4f9a2d675d32b14..7330ea1391f8ceaf335824e53eb1ca27c7006cf0 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb index 180e84e81ad088dda86c26fd0a1b9157a72e52ff..66974822a8d2f7d98cdedcef8a4c6685b3faac93 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb index 075de5f34fdecc280599ceebd9aecbec29fc685b..6e94d0afc640d8c722ecf464e2f45bd5f675fbd7 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb index ddeef5db37e42245e4a29dc0c6c44efa385e1ca5..d913bace564af94acd61ba448c6a12b9a996299f 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..70218fe0107d4ac293bab3d6606af62fff3f29e0 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.9')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..be10bd30c3fe0eddeff6b3c29a5517afb23e340b --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.8')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..673297873566e76337ddbd2f750443b6ca05a1f0 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.8')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..451fc7c456a9266203b2e2c7dea80e869b8c1649 --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'GMAP-GSNAP' +version = '2013-11-27' + +homepage = 'http://research-pub.gene.com/gmap/' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.7'), +] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gmap", "bin/gsnap"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..eaca9cab2b0d18ba364c812146745a4712a3fbd7 --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'GMAP-GSNAP' +version = '2013-11-27' + +homepage = 'http://research-pub.gene.com/gmap/' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.7'), +] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gmap", "bin/gsnap"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..fb499f088b8a6f6ea6b31076deb2bb71553525d3 --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'GMAP-GSNAP' +version = '2013-11-27' + +homepage = 'http://research-pub.gene.com/gmap/' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.7'), +] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gmap", "bin/gsnap"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ce82b5b2d73e74bcb56b64a8d7c82ee97c01cf8 --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'GMAP-GSNAP' +version = '2014-01-21' + +homepage = 'http://research-pub.gene.com/gmap/' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# with these deps you can use standard compressed files +# to support files in gobby format take a look at README for extra dependencies +# http://research-pub.gene.com/gmap/src/README +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = [SOURCELOWER_TAR_GZ] + +# you can change the MAX_READLENGTH for GSNAP with something like this. +# details in the README http://research-pub.gene.com/gmap/src/README +#configopts = 'MAX_READLENGTH=250' + +sanity_check_paths = { + 'files': ['bin/gmap', 'bin/gsnap'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..746e7c4f5339888f5130e7cbddf9115aa615b3c1 --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'GMAP-GSNAP' +version = "2014-06-10" + +homepage = 'http://research-pub.gene.com/gmap/' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# with these deps you can use standard compressed files +# to support files in gobby format take a look at README for extra dependencies +# http://research-pub.gene.com/gmap/src/README +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = [SOURCELOWER_TAR_GZ] + +# you can change the MAX_READLENGTH for GSNAP with something like this. +# details in the README http://research-pub.gene.com/gmap/src/README +#configopts = 'MAX_READLENGTH=250' + +sanity_check_paths = { + 'files': ['bin/gmap', 'bin/gsnap'], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb b/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..83a58f1b101f47b9fe4150252a3f51464a32eba3 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '4.3.2' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [GNU_SOURCE] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb index 2706aa74863e6ebbbaef5df18b0d1d292ffb5a33..9ab24027f406ca75a7a085c568c99eed4d61ab59 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' @@ -13,7 +15,7 @@ source_urls = [GNU_SOURCE] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb index c9123d61f717149c15f5ee360505625e7af51ff0..5f086711280bcb38d75794bcf054b3e3c7dcf849 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' @@ -12,7 +14,7 @@ source_urls = [GNU_SOURCE] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb index 3c7c8b1566c00699d9c88bee779da104061a8242..764cf5d1001c9d4286dc96dc9107d6ffb763bdc2 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' @@ -13,7 +15,7 @@ source_urls = [GNU_SOURCE] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb index 8fdf71fe7e49ef79747550cc6ec5850d4dd20329..10293bba6c129abd012f68818527f608e2e1347c 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' @@ -14,7 +16,7 @@ source_urls = [GNU_SOURCE] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..1089f784b4c978f0da2eeed4fb21a279b558e89e --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.1' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb index af2d9401ca6e42659261ed7b43d4fedaa8bc9cae..7e154f1b44fc905b77e96293b070ea935c4091de 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.1' @@ -13,7 +15,7 @@ source_urls = [GNU_SOURCE] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb index 603803b0a17d29714b69ddf5c9f763dd9cd4e84e..d55767c5380774a621ae022a4017f0356795821c 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.1' @@ -13,7 +15,7 @@ source_urls = ['http://ftp.gnu.org/gnu/gmp'] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..9dd85e3f7429680b355d0f446b309cd483ab9fd2 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.1' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..52730066535094bfd3823bc4a99132f2ee6d615c --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [GNU_SOURCE] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c7f00d04aede40499a0200d36522451659bd4350 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb index 12faa79b4ad5bcda47b5ee7963f7b7ec36a77845..a376bcfd0f59209d1a29eea952aec1890934a2d2 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.3' @@ -16,7 +18,7 @@ configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b1a1509d11351e5ae9983f7404ef403ec181ca8a --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb index bbaacb631c3c42fcc58117dd8bb1a48e14cd1460..5acb2c72f3c121c664109d8f13cafbdadc4fdae3 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.3' @@ -16,7 +18,7 @@ configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d78c4c8288b496b1864de104cc38ff0b69ecdb34 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2b5b650040ceb85228fbea32feda6e1f636d0ace --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.0.0a' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..73dfcfd2e8020f4ad329b2fbb93edd73fba5a7a1 --- /dev/null +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'GObject-Introspection' +version = '1.42.0' + +homepage = 'https://wiki.gnome.org/GObjectIntrospection/' +description = """GObject introspection is a middleware layer between C libraries + (using GObject) and language bindings. The C library can be scanned at + compile time and generate a metadata file, in addition to the actual + native C library. Then at runtime, language bindings can read this + metadata and automatically provide bindings to call into the C library.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/%(namelower)s/%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('Python', '2.7.8'), + ('GLib', '2.40.0'), + ('Bison', '3.0.2'), +] + +sanity_check_paths = { + 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + + ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + 'dirs': ['include', 'share'] +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index 2c32c1c216c62aea8f4ae0463d8eb857bbdf2a80..85881f3e3835a22aaf2e6e79fe5896d44df11011 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index 7304cc57896b515587d234d93c18cb3ee339c330..8dac71d95216c28a5a927d20854add1944d6ea4a 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index d2a6762f37432e3208ee97961ae6930d54473302..10de39383d11326303389717b409a7c9048e2be9 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index caa9471e7c454ff8a28ddca3e810003f0a35a36b..7d4a515bd7e91ac34fdf4f5aa594e0b3c865bb23 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index 6dcbff4c396b765a07ff4f7aefd7922aeee0f8d1..11decefff106081c177f200487a28379c196f2c6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index 605b8ed69d19584acbd6d8ebf9395d2d35fb62a3..7bc4e4ad920c71c932389dbdd5944a7b87478fe6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index bbf71787ee4cf250227faf726ad09e3227914a21..c6a01d5cb91c69878611e7c21850c15b0c07a135 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index 72e6d81f6cc66fdd5b27324f7ddd9a932a85ce75..f47fc727b16cf33980f826d3828b83f4ef306731 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index 45f81add29efe945db0c28745c8ba9b779c57ddc..c1dc7fabd0d578cf999271591761eb80c16b6a26 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index 6d1ed16eeec2acdb4f28f906bf3dd1f61b0e374c..aa2709aff926ae984216b4e024af1784e8831902 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index afe1fbe21b75d02b916ad1b93258fc484bcb7d21..6a5829cb2188954f132d528c1a812aced1f84c57 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index e9d5d04c88958c19dff2e79fe0f74f9a1bf3c437..897f8573da033b09c7af0233f9be6c5005489fbc 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-double.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-double.eb new file mode 100644 index 0000000000000000000000000000000000000000..2e9d4111bbb492189aaf0fe36adc232c2c461aec --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-double.eb @@ -0,0 +1,33 @@ +easyblock = 'CMakeMake' + +name = 'GROMACS' +version = '4.6.5' +versionsuffix = '-double' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] + +builddependencies = [('CMake', '2.8.12')] + +configopts = "-DREGRESSIONTEST_PATH='%(builddir)s/regressiontests-%(version)s'" +runtest = 'check' + +# explicitely disable CUDA support, i.e. avoid that GROMACS find and uses a system-wide CUDA compiler +# CUDA and GCC v4.7 don't play well together +# enable double precision +configopts += ' -DGMX_GPU=OFF -DGMX_DOUBLE=ON -DGMX_MPI=ON -DGMX_THREAD_MPI=OFF' + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index 73c56d433b02d751bb7f563f2d402c57a5327b12..eaada284fdb7850f96410288f1a0c528be0f89c6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index e5cfaf582609db25df23c033ebb116baecd390b7..95002c6f561b7891b293d299e41186b72b4e0153 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index 0056d45c8c7fa34456010b03e93d3035761b8524..1de33cf464ae3f06f69304e251155f9744e653bd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 060e0556d6fc58beea964993787737586c48db2b..367a63d0a3105d2c8679d8f6093d32a7c8a474eb 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index 1f91b84ea436eadf4060f017627ca5b24390d437..4e7a111b3a9c1d93b26ab9c83946a71065c78a39 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index b04177b6119c1eb9f6518d3ffb9fe5891f3f28f5..1d36cf509958ea466373b782584c9325b35ab905 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb index aa9ed9d6e06240518de6ce7939de6eca7c57916e..85ec8681aa7fcd1f7874900bf7cdb7b624171eab 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb index 2ee4d9e6cd9685011f1b291f1d248efda710bb50..2bc7e232eb602992cf83ea526e238fe9b7773076 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..d19efed940179e6b5f19286e9095e300a9dbddc9 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.15' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. +The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb index d1b3c6c69908e7416352d15b9be7420bd7cfd74e..3ee18f98a213b915b001e4d1b645582d7e06890a 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb index b06aa6754ea3a16f04b9f6b272a6972aa5fb639e..a0f704520931317bc1ad442f149120655de843c7 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3d34fbf06f55ceeb2fca5732ba4ef16d5c7a768b --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.15' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. +The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b20d7731f8b8ec54fc8b1ae0b2cfecafe7396303 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb index 2d05bc47751bfe572eafcf7ccec667849b47def1..108a2f3dc54cd63352a14bf8aabf0d2b43f1fbee 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' @@ -8,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffcd9e480449ad3fd029a9195a54f10bc3dda8a7 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. +The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb index c7926143598193d85fb1916e9f7c9fa1c303032e..875d7306f51a7de44c70c56266e337b481b166a7 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' @@ -8,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolfc', 'version': '1.3.12'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb index db182f74d85e5fd2f3dc5c6609ecdc15cceee549..9d9ca828127cfc1a3fcf22bee3865713a1331f15 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' @@ -8,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolfc', 'version': '2.6.10'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb index 4a057258305c0c61627a29654dfcd4913b548320..7005ed5e6ab8d18340cb53ca1e1fee7548b58de6 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' @@ -8,7 +10,7 @@ description = """The GNU Scientific Library (GSL) is a numerical library for C a toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9d1699e64d8d711de212654c0c50284a43a6b017 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'ictce', 'version': '5.4.0'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb index f649ead9a54e00bc86667a3ebd35a75526da5533..1291647435089335a51cdbbc62d564e34882778b 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..958500b4dd9c7ab76f8ca3f39b43aace393ad432 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3587bf11b973c2665c51c7c105808be910629923 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..79f876ac1d11aac1ed5637239d8a01f0dc65e01f --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..fc5eb6da7baf8cd9ee8e2c19390f0cb8b4e05ef2 --- /dev/null +++ b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'GSSAPI' +version = '0.28' + +homepage = 'http://search.cpan.org/~agrolms/GSSAPI-0.28/' +description = """Perl extension providing access to the GSSAPIv2 library.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/CPAN/authors/id/A/AG/AGROLMS/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('Kerberos_V5', '1.12.2'), +] + +options = {'modulename': 'GSSAPI'} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb index ca94e17050c5da191dad767b413e093792844217..f600de3146a58590972a84f949824d13bb4d1a70 100644 --- a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -28,7 +28,7 @@ dependencies = [('PnMPI', '1.2.0')] builddependencies = [('CMake', '2.8.10.2')] configopts = '-DCMAKE_BUILD_TYPE=Release -DPnMPI_INSTALL_PREFIX=${EBROOTPNMPI}' -makeopts = 'CXXFLAGS="$CXXFLAGS -fpermissive"' +buildopts = 'CXXFLAGS="$CXXFLAGS -fpermissive"' sanity_check_paths = { 'files': ["bin/weaver", "include/I_Profiler.h"], diff --git a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..b673ea80e1810e3aec5ba5901f961dc5edfe5afe --- /dev/null +++ b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GTS' +version = '0.7.6' + +homepage = 'http://gts.sourceforge.net/' +description = """GTS stands for the GNU Triangulated Surface Library. + It is an Open Source Free Software Library intended to provide a set of useful + functions to deal with 3D surfaces meshed with interconnected triangles.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('GLib', '2.40.0'), +] + +sanity_check_paths = { + 'files': ['lib/libgts.so', 'bin/gts2oogl', 'bin/gtscheck'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..32054f56b53a7ebc2ab1949eb9c70bf71650f6b2 --- /dev/null +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb @@ -0,0 +1,24 @@ +name = 'Geant4' +version = '9.4.p02' + +homepage = 'http://geant4.cern.ch/' +description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. + Its areas of application include high energy, nuclear and accelerator physics, + as well as studies in medical and space science.""" + +toolchain = {'name': 'ictce', 'version':'4.0.6'} + +source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] + +dependencies = [ + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + +configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" +configopts += "-DGEANT4_INSTALL_DATA=OFF" + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb index a80453f4b85a42309520ea00270373ddd3bc8e17..b6f358819ffeaeabf5fbccf398e426fe643934f9 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb @@ -8,13 +8,16 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic toolchain = {'name': 'goalf', 'version':'1.1.0-no-OFED'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb index 28ffc95277fd4c7f1d014925b86653ed0b05eae7..7db2e910b247cfd981c576eb5b685abf9fa847da 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb @@ -8,13 +8,16 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb index b430f09f389ef85d6772a355e63afe26f853ee2c..d2acaf5f1dc015f712dced0af0ec377ec07a16f4 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb @@ -8,13 +8,16 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic toolchain = {'name': 'ictce', 'version':'4.0.6'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb index 816b287e43a8745e868e2632517e8680e4f57b83..cbe91d153a165e97b00e191efbb922be05943a2f 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb @@ -6,16 +6,18 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb index 9e63e7389c8ea5414822c5d608061db898b92b18..8aa2e7719b61ee95d7b31d1e873d886e9e19b754 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Ghostscript' version = '9.10' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb index 12bdcd0f27e01a885925d650c8518a1c8357c254..639074ff9e813bef0a1dad23fc7942afe2a773c2 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Ghostscript' version = '9.10' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9439f32c2bee41cae604ebd89d424a87ec9b8f96 --- /dev/null +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb @@ -0,0 +1,44 @@ +easyblock = 'ConfigureMake' + +name = 'Ghostscript' +version = '9.14' + +homepage = 'http://ghostscript.com' +description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to + different targets. It used to be part of the cups printing stack, but is no longer used for that.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = ["http://downloads.ghostscript.com/public/"] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), + ('GLib', '2.40.0'), + ('libjpeg-turbo', '1.3.1'), + ('libpng', '1.6.12'), + ('expat', '2.1.0'), + ('cairo', '1.12.18'), + ('LibTIFF', '4.0.3'), + ('zlib', '1.2.8'), +] + +patches = ['Ghostscript-9.14_use_extzlib.patch'] + +# Use external libraries http://www.linuxfromscratch.org/blfs/view/svn/pst/gs.html +preconfigopts = "rm -rf expat freetype jpeg libpng zlib && " + +configopts = "--with-system-libtiff --enable-dynamic " + +buildopts = [' ', 'so'] + +installopts = [' ', 'soinstall'] + +sanity_check_paths = { + 'files': ['bin/gs', 'bin/ps2pdf', 'lib/libgs.so'], + 'dirs': ['include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch new file mode 100644 index 0000000000000000000000000000000000000000..8f90c895eba80a06948e3fa25bebcaa8eb1636ac --- /dev/null +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch @@ -0,0 +1,47 @@ +# Use external ZLIB instead of Ghostscript provided ZLIB +# See http://www.linuxfromscratch.org/blfs/view/svn/pst/gs.html +# patch part #2: +# http://git.ghostscript.com/?p=ghostpdl.git;a=commitdiff;h=0ccf3294 +--- ghostscript-9.14/configure.orig 2014-03-26 13:53:47.000000000 +0100 ++++ ghostscript-9.14/configure 2014-09-09 10:03:12.742169571 +0200 +@@ -6254,7 +6254,7 @@ + $as_echo_n "checking for local zlib source... " >&6; } + # we must define ZLIBDIR regardless because png.mak does a -I$(ZLIBDIR) + # this seems a harmless default +-ZLIBDIR=src ++ZLIBDIR=$includedir + AUX_SHARED_ZLIB= + + if test -d $srcdir/zlib; then +--- ghostscript-9.14/configure.ac.orig 2014-03-26 13:53:48.000000000 +0100 ++++ ghostscript-9.14/configure.ac 2014-09-09 10:03:12.724170038 +0200 +@@ -854,7 +854,7 @@ + dnl zlib is needed for language level 3, and libpng + # we must define ZLIBDIR regardless because png.mak does a -I$(ZLIBDIR) + # this seems a harmless default +-ZLIBDIR=src ++ZLIBDIR=$includedir + AUX_SHARED_ZLIB= + + if test -d $srcdir/zlib; then +--- ghostscript-9.14/devices/devs.mak.orig 2014-03-26 13:53:48.000000000 +0100 ++++ ghostscript-9.14/devices/devs.mak 2014-09-09 11:33:30.513450444 +0200 +@@ -1596,9 +1596,16 @@ + + fpng_=$(DEVOBJ)gdevfpng.$(OBJ) $(DEVOBJ)gdevpccm.$(OBJ) + +-$(DEVOBJ)gdevfpng.$(OBJ) : $(DEVSRC)gdevfpng.c\ ++$(DEVOBJ)gdevfpng_0.$(OBJ) : $(DEVSRC)gdevfpng.c\ + $(gdevprn_h) $(gdevpccm_h) $(gscdefs_h) $(zlib_h) +- $(CC_) $(I_)$(DEVI_) $(II)$(PI_)$(_I) $(PCF_) $(GLF_) $(DEVO_)gdevfpng.$(OBJ) $(C_) $(DEVSRC)gdevfpng.c ++ $(CC_) $(I_)$(DEVI_) $(II)$(PI_)$(_I) $(PCF_) $(GLF_) $(DEVO_)gdevfpng_0.$(OBJ) $(C_) $(DEVSRC)gdevfpng.c ++ ++$(DEVOBJ)gdevfpng_1.$(OBJ) : $(DEVSRC)gdevfpng.c\ ++ $(gdevprn_h) $(gdevpccm_h) $(gscdefs_h) ++ $(CC_) $(I_)$(DEVI_) $(II)$(PI_)$(_I) $(PCF_) $(GLF_) $(DEVO_)gdevfpng_1.$(OBJ) $(C_) $(DEVSRC)gdevfpng.c ++ ++$(DEVOBJ)gdevfpng.$(OBJ) : $(DEVOBJ)gdevfpng_$(SHARE_ZLIB).$(OBJ) ++ $(CP_) $(DEVOBJ)gdevfpng_$(SHARE_ZLIB).$(OBJ) $(DEVOBJ)gdevfpng.$(OBJ) + + $(DD)fpng.dev : $(DEVS_MAK) $(fpng_) $(GLD)page.dev $(GDEV) + $(SETPDEV2) $(DD)fpng $(fpng_) diff --git a/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb b/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..4987f6eb38db8b2abed6a40c8a0751eec0d639c4 --- /dev/null +++ b/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb @@ -0,0 +1,20 @@ +name = 'Go' +version = '1.2.1' + +homepage = 'http://www.golang.org' +description = """Go is an open source programming language that makes it easy to build + simple, reliable, and efficient software.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = ['%(namelower)s%(version)s.src.tar.gz'] +source_urls = ['https://go.googlecode.com/files'] + +patches = ['Go-%(version)s_fix-time-test.patch'] + +sanity_check_paths = { + 'files': ['bin/go', 'bin/gofmt'], + 'dirs': ['api', 'doc', 'include', 'pkg'], +} + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch b/easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch new file mode 100644 index 0000000000000000000000000000000000000000..15d912a647a18c7d8b02d9556f60e72113cce385 --- /dev/null +++ b/easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch @@ -0,0 +1,66 @@ +see https://github.com/golang/go/issues/8547 and https://github.com/golang/go/commit/5e70140521ac2e5c004de8cd61321d3a51619ae6 +diff --git a/src/pkg/time/time_test.go b/src/pkg/time/time_test.go +index a7c6d55..ecc5c8f 100644 +--- a/src/pkg/time/time_test.go ++++ b/src/pkg/time/time_test.go +@@ -183,39 +183,45 @@ func TestParse(t *testing.T) { + } + } + +-func TestParseInSydney(t *testing.T) { +- loc, err := LoadLocation("Australia/Sydney") ++func TestParseInLocation(t *testing.T) { ++ // Check that Parse (and ParseInLocation) understand that ++ // Feb 01 AST (Arabia Standard Time) and Feb 01 AST (Atlantic Standard Time) ++ // are in different time zones even though both are called AST ++ ++ baghdad, err := LoadLocation("Asia/Baghdad") + if err != nil { + t.Fatal(err) + } + +- // Check that Parse (and ParseInLocation) understand +- // that Feb EST and Aug EST are different time zones in Sydney +- // even though both are called EST. +- t1, err := ParseInLocation("Jan 02 2006 MST", "Feb 01 2013 EST", loc) ++ t1, err := ParseInLocation("Jan 02 2006 MST", "Feb 01 2013 AST", baghdad) + if err != nil { + t.Fatal(err) + } +- t2 := Date(2013, February, 1, 00, 00, 00, 0, loc) ++ t2 := Date(2013, February, 1, 00, 00, 00, 0, baghdad) + if t1 != t2 { +- t.Fatalf("ParseInLocation(Feb 01 2013 EST, Sydney) = %v, want %v", t1, t2) ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Baghdad) = %v, want %v", t1, t2) + } + _, offset := t1.Zone() +- if offset != 11*60*60 { +- t.Fatalf("ParseInLocation(Feb 01 2013 EST, Sydney).Zone = _, %d, want _, %d", offset, 11*60*60) ++ if offset != 3*60*60 { ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Baghdad).Zone = _, %d, want _, %d", offset, 3*60*60) ++ } ++ ++ blancSablon, err := LoadLocation("America/Blanc-Sablon") ++ if err != nil { ++ t.Fatal(err) + } + +- t1, err = ParseInLocation("Jan 02 2006 MST", "Aug 01 2013 EST", loc) ++ t1, err = ParseInLocation("Jan 02 2006 MST", "Feb 01 2013 AST", blancSablon) + if err != nil { + t.Fatal(err) + } +- t2 = Date(2013, August, 1, 00, 00, 00, 0, loc) ++ t2 = Date(2013, February, 1, 00, 00, 00, 0, blancSablon) + if t1 != t2 { +- t.Fatalf("ParseInLocation(Aug 01 2013 EST, Sydney) = %v, want %v", t1, t2) ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Blanc-Sablon) = %v, want %v", t1, t2) + } + _, offset = t1.Zone() +- if offset != 10*60*60 { +- t.Fatalf("ParseInLocation(Aug 01 2013 EST, Sydney).Zone = _, %d, want _, %d", offset, 10*60*60) ++ if offset != -4*60*60 { ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Blanc-Sablon).Zone = _, %d, want _, %d", offset, -4*60*60) + } + } + diff --git a/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0165dca50950de26ca91c482892090abd079f677 --- /dev/null +++ b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'GraphViz2' +version = '2.33' + +homepage = 'https://metacpan.org/pod/GraphViz2' +description = """This module provides a Perl interface to the amazing Graphviz, +an open source graph visualization tool from AT&T.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'] +sources = [SOURCE_TGZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("Graphviz", "2.38.0"), +] + + +options = {'modulename': 'GraphViz2'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c23e8f17a12714c5893ad321729d20b2f5e9cc2e --- /dev/null +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -0,0 +1,67 @@ +easyblock = 'ConfigureMake' + +name = 'Graphviz' +version = '2.38.0' + +homepage = 'http://www.graphviz.org/' +description = """Graphviz is open source graph visualization software. Graph visualization + is a way of representing structural information as diagrams of + abstract graphs and networks. It has important applications in networking, + bioinformatics, software engineering, database and web design, machine learning, + and in visual interfaces for other technical domains.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/'] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.8' + +dependencies = [ + ('cairo', '1.12.18'), + ('expat', '2.1.0'), + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), + ('Ghostscript', '9.14'), + ('GLib', '2.40.0'), + ('GTS', '0.7.6'), + ('Java', '1.7.0_60', '', True), + ('libpng', '1.6.12'), + ('Pango', '1.36.7'), + ('Perl', '5.20.0'), + (python, pythonversion), + ('Qt', '4.8.6'), + ('SWIG', '3.0.2', '-%s-%s' % (python, pythonversion)), + ('Tcl', '8.6.2'), + ('zlib', '1.2.8'), +] + +builddependencies = [ + ('M4', '1.4.17'), +] + +patches = [ + 'Graphviz-2.38.0_icc_vmalloc.patch', + 'Graphviz-2.38.0_icc_sfio.patch', +] + +configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no ' +configopts += '--enable-r=no --enable-ruby=no ' + +prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && ' + +sanity_check_paths = { + 'files': ['bin/cluster', 'bin/dot', 'bin/gvmap', + 'lib/libcdt.so', 'lib/libgvc.so', 'lib/libxdot.so'], + 'dirs': ['include'] +} + +modextrapaths = { + 'PYTHONPATH': 'lib/graphviz/python', + 'CLASSPATH': 'lib/graphviz/java/org/graphviz', + 'LD_LIBRARY_PATH': 'lib/graphviz/java', + 'TCLLIBPATH': 'lib/graphviz/tcl', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch new file mode 100644 index 0000000000000000000000000000000000000000..d5e5c02dbcd9014af7a1f6576ab02aa72d32db44 --- /dev/null +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch @@ -0,0 +1,13 @@ +#iffe determines wrongly _lib_qldexp and _lib_qfrexp +# both should be 0 +--- lib/sfio/features/sfio.orig 2014-04-13 22:40:25.000000000 +0200 ++++ lib/sfio/features/sfio 2014-09-08 13:49:38.410506603 +0200 +@@ -11,8 +11,6 @@ + + hdr string + hdr math +-lib qfrexp +-lib qldexp + + hdr unistd + hdr values diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch new file mode 100644 index 0000000000000000000000000000000000000000..2ea488cc644a432fcdd36b22f92d4b351063dd08 --- /dev/null +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch @@ -0,0 +1,14 @@ +# iffe determines wrongly the vmalloc libraries. +# for icc _lib_mallopt, _lib_mallinfo, and _lib_mstats should be 0 in /FEATURE/vmalloc +# inspired by http://gnats.netbsd.org/43870 +--- lib/vmalloc/features/vmalloc.orig 2014-04-13 22:40:25.000000000 +0200 ++++ lib/vmalloc/features/vmalloc 2014-09-08 13:25:40.230441395 +0200 +@@ -13,9 +13,6 @@ + sys stat + typ ssize_t + hdr malloc +-lib mallopt +-lib mallinfo +-lib mstats + hdr alloca + hdr dlfcn diff --git a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb index ae5c1573ae49b374fa12c203684718ebbe9d60e6..757c5d4553c302b5de823106b6db9739e251b302 100644 --- a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb @@ -31,3 +31,5 @@ sanity_check_paths = { 'lib/python%s/site-packages/greenlet.so' % pythonshortversion], 'dirs': [], } + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..43c5a459fa807e35f8443d9da8a131b90d28c211 --- /dev/null +++ b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'Grep' +version = '2.21' + +homepage = 'http://www.gnu.org/software/grep/' +description = """The grep command searches one or more input files for lines containing a match to a specified pattern. By default, grep prints the matching lines.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] + +sanity_check_paths = { + 'files': [], + 'dirs': ["bin"] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index adc07319fe8bd522d42584c1f9b39fca90ed972c..39b5e35917c7af992bc2dc809c209dacad097823 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'gawk' version = '4.0.2' diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index 2f7e0cf88252f8dffbdd426006b3240140079db9..75c54349b634738a13b171d721069ecc023cf03c 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'gawk' version = '4.0.2' diff --git a/easybuild/easyconfigs/g/gcccuda/gcccuda-2.6.10.eb b/easybuild/easyconfigs/g/gcccuda/gcccuda-2.6.10.eb index d75a89f110270b08f81310ac9362f6431f9a9cf0..f709c63df4fe2138eb76d1d2f7afc62d4f79d859 100644 --- a/easybuild/easyconfigs/g/gcccuda/gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/g/gcccuda/gcccuda-2.6.10.eb @@ -8,10 +8,14 @@ description = """GNU Compiler Collection (GCC) based compiler toolchain, along w toolchain = {'name': 'dummy', 'version': 'dummy'} +comp_name = 'GCC' +comp_ver = '4.8.2' +comp = (comp_name, comp_ver) + # compiler toolchain dependencies dependencies = [ - ('GCC', '4.8.2'), - ('CUDA', '5.5.22'), + comp, + ('CUDA', '5.5.22', '', comp), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb index 2d9e22b986ceb80f0ccb50b5dceda64a6320edcd..9374bda6a4e946b41817ee08b95ff9438958f328 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb index 74ed768df4a98d9c3d9e3434f82c7b57530d334d..7b4d0a27b127e87afb4ea8dc6e8e857d94f16c04 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb index 4bcc26447ad944115a7b4e3c95631ddabcdebfde..5c108441eedcac9ad52c6be0eff9ab998b5e1b13 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb index a32268bf8f92121b96cac12ca4b71d59060127dc..66411381313beec9dca8bdb4b6fef564882ebdbd 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb index 1fede7e4c6820bb9c681c3777bd51ba4852f41fb..7cd7a0f5785721d678b58c17a0474d8f28eb8ade 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb index 87753bfbc926598728dc1f116f1c85d29994cab1..89a32b62e0f8ab4dbb9e2933ea125a0ce342af2d 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb index b9cff2211e547df0f94b12cf9d682eca1ef1e0a8..bac88b866a7e1c1b67be936b4e42f579c8c38c40 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb index c26723dfec5937f9880b90ef2624dd301d593bd1..dde39ff8326fa6a2b43943f4ca0cb75e8294fded 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb index 35cded15c6774b1471fc44d650eaedc7758ddaa1..94025ea53ebc4e3b4042da12e0dfa8d4ce34407e 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb index 8c7cc9b4b85d731edf11872a6b39bb261eaa5acf..686c6f9d409515f4cceffaf28b7836983f8e6052 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..adf041c9d3eb2dcd74c06c6fb8097635c548b2c0 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.18.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb index 3eddb0a6d24bd5e59bba7905660160574c987140..514029b0c2212388959a033733e8cf3eb9de4e8f 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb index 56598b375e1997e977cdee11195ec5677b987c5e..ea88dd569c366f085c21442e15688cd8d793b545 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb index be4e49be1750fa23971b389c0bcd43ab84ca46e2..5479e98f2377785512ebc77c841e63d362f8fb97 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb index 3c2d60cef27a79b14ec93652f4919b5bc8454f65..21f6d06397a6a717de016b55dba11adb76761c40 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..a1a642076c1cec1603448da4b00994234d4a2620 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a0c6e923392a125f5138c4f5f30352f46ea4298a --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c49302820d355f68de88379261ed6593732c3bde --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..7e8ff4e184d79e85cfff1bcbecdddb813548ef1f --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.4' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gimkl/gimkl-1.5.9.eb b/easybuild/easyconfigs/g/gimkl/gimkl-1.5.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..1cf32be4492a54d6cd3b3ea2ab590a61f6a57dd9 --- /dev/null +++ b/easybuild/easyconfigs/g/gimkl/gimkl-1.5.9.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'gimkl' +version = '1.5.9' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, next to Intel MPI and + Intel MKL (BLAS, (Sca)LAPACK, FFTW).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp = ('GCC', '4.8.3') + +dependencies = [ + comp, + ('impi', '4.1.3.049', '', comp), + ('imkl', '11.1.2.144', '', ('gimpi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gimpi/gimpi-1.5.9.eb b/easybuild/easyconfigs/g/gimpi/gimpi-1.5.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..9456e115ed6922c3006a8b5404c8499e3b6b91d2 --- /dev/null +++ b/easybuild/easyconfigs/g/gimpi/gimpi-1.5.9.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'gimpi' +version = '1.5.9' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, next to Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp = ('GCC', '4.8.3') + +dependencies = [ + comp, + ('impi', '4.1.3.049', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index c692feebea98b51a6a498a1793c83db791ef16cf..6e6602e1acd983955214b1bee562518a1b9e1b50 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index a3203c2722a5c9438bcab2359aec7145b7b19a95..bba320bc05dc3ec301ff2d435cadbdf197c1af3c 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb index 25a5fa2c15f47bd85ac2e85077699432d127db02..08b113a1e93f2f673bcdc4b10ab3b88c2f127347 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index e314ce9a4a8d3621e8b4ec35d4e8228d8ba733a7..75c6bb092fe802f903df8c843f8393473102e008 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb index cbd803ef094216e6764eee468dbd568aaeb193b5..6a6c3a3ab69669d35fabb016565620f01535831e 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index 55d01e4601342fcd9086376844f91cd8daff44e7..031cdf8a765ccf3a5e6cd8cdc5686b3d31b03d7c 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb index 24793d6e142b768d4e1c8b11068715b822d31d2a..04007162250989b6de0dd25217f84dfe8e1af1a5 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb index c7bb3272a886ce9907f5cf8b3f8828c383028140..f5e0842b35f854f8f88231a5b44f031e71348bae 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb index 649c48235accdd9b71aa52000c5a3350190a2667..544929857c8e4f187f19f0e57dedd97c5034b5c3 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index fa7d2b38d201224cba3d803f6a1064fa5cf4198c..89c596b6175d7bb74d61ce907637bc128598d5b3 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index 5b98a2e11ac4945bb1c32b5135abaf110f88fc53..a705caba430736331b164e3892f49fbc5286d558 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index dab2d48e65723873bcddbc187690a901d4ff0041..6dfc4c5947fe5beefccec2a9479a1ab6238ddcfb 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.3.1' diff --git a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..7360f033fed6d89439aadd1d53ec98d3decf3acf --- /dev/null +++ b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb @@ -0,0 +1,46 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# Authors:: Dmitri Gribenko +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'git' +version = '1.8.5.6' + +homepage = 'http://git-scm.com/' +description = """Git is a free and open source distributed version control system designed +to handle everything from small to very large projects with speed and efficiency.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +# eg. http://git-core.googlecode.com/files/git-1.8.2.tar.gz +sources = ['v%s.tar.gz' % version] +source_urls = ['https://github.com/git/git/archive'] + +preconfigopts = 'make configure && ' + +dependencies = [ + ('cURL', '7.40.0'), + ('expat', '2.1.0'), + ('gettext', '0.19.4'), +] + +sanity_check_paths = { + 'files': ['bin/git'], + 'dirs': [], +} + +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--enable-pthreads='-lpthread'" + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..48bda49ebe43fce3f118dbe803b088fc00933a2a --- /dev/null +++ b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# Authors:: Dmitri Gribenko +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'git' +version = '2.2.2' + +homepage = 'http://git-scm.com/' +description = """Git is a free and open source distributed version control system designed +to handle everything from small to very large projects with speed and efficiency.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/git/git/archive'] + +preconfigopts = 'make configure && ' + +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--enable-pthreads='-lpthread'" + +dependencies = [ + ('cURL', '7.40.0'), + ('expat', '2.1.0'), + ('gettext', '0.19.4'), +] + +sanity_check_paths = { + 'files': ['bin/git'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb index 5dc0bc40c626498b61bd6207807c66eefed3793e..fefd3eeaab57f8ff4713c8362b3238996f11a9bc 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb index 17a12f2d726648a0ab02696d9ccdaff6a0d50d4d..2c1515c3ee49d1afc382fe72781a5a617c762fd3 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb index ea7273eaed4900764d0dd694a66d7ce1a572dd35..1316bedb2ab539ae2f0ad3264e0189cb91b1b70e 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..282c406ca1bd5f0daa1331c8a8c459c22f74726f --- /dev/null +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'glproto' +version = '1.4.16' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', + 'glxtokens', 'internal/glcore']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb index 0b6ca017355898cc946abaf1966e6dd0b3189f52..efe43edfabb30e1a07542c99c16fbcda730418ab 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..828a170d2017e5d00d2cbe5343fdee7f75aaf3d4 --- /dev/null +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'glproto' +version = '1.4.16' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', + 'glxtokens', 'internal/glcore']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gmpich2/gmpich2-1.4.8.eb b/easybuild/easyconfigs/g/gmpich/gmpich-1.4.8.eb similarity index 83% rename from easybuild/easyconfigs/g/gmpich2/gmpich2-1.4.8.eb rename to easybuild/easyconfigs/g/gmpich/gmpich-1.4.8.eb index 7aaac2970c5bf171c1f11e686c41998ebf6c3463..6e078643e7a613a1119072ff547769c0bdf3be35 100644 --- a/easybuild/easyconfigs/g/gmpich2/gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/g/gmpich/gmpich-1.4.8.eb @@ -1,11 +1,11 @@ easyblock = "Toolchain" -name = 'gmpich2' +name = 'gmpich' version = '1.4.8' homepage = '(none)' description = """gcc and GFortran based compiler toolchain, - including MPICH2 for MPI support.""" + including MPICH for MPI support.""" toolchain = {'name': 'dummy', 'version': 'dummy'} @@ -13,7 +13,7 @@ compname = 'GCC' compver = '4.8.1' comp = (compname, compver) -mpilib = 'MPICH2' +mpilib = 'MPICH' mpiver = '3.0.4' # compiler toolchain depencies diff --git a/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb index dc21b726a3c334bfc2d29a50777cb729a5071768..0c9aa5c313bfee18a8ccb4e002cdaf77e2291878 100644 --- a/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb @@ -19,14 +19,14 @@ blas = '%s-%s' % (blaslib, blasver) blassuff = '-LAPACK-3.4.2' # toolchain used to build dependencies -comp_mpi_tc_name = 'gmpich2' +comp_mpi_tc_name = 'gmpich' comp_mpi_tc_ver = version comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # compiler toolchain dependencies dependencies = [ comp, - ('MPICH2', '3.0.4', '', comp), # part of gmpich2 toolchain + ('MPICH', '3.0.4', '', comp), # part of gmpich toolchain (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index a5ff9d8c5457a1ebb0c2272e992ff65291562266..81a026fc55888cf7d1f16fbcde2f0db787261161 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 92f7f57121ccaef3b902ee28fdf362b051c01eb7..9c6317ae8b142e3935430efca5c1a9f86d9b36fd 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index 702aed1c9a570dfe30621a6fa2dc0d7e1dc36c84..a473b4546fdc53316bf822d82bb3984b605f4712 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index 077a7022f64a3de4ac630ad80981982ef3c4b448..c4db96bf9619fec2d40ae7b2b2718ac495b2113e 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7112a25a66625b50e79f10585750aa8881531a51 --- /dev/null +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## +easyblock = 'ConfigureMake' + +name = 'gnuplot' +version = '4.6.6' + +homepage = 'http://gnuplot.sourceforge.net/' +description = """Portable interactive, function plotting utility""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] + +dependencies = [ + ('cairo', '1.12.18'), + ('libjpeg-turbo', '1.3.1'), +] + +sanity_check_paths = { + 'files': ['bin/gnuplot'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb index 05a624232e81f7be62b4a737e24a1cba44bcb1e7..8746928b55d8d5042f89d418ecbb872851e40541 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gnutls' version = '3.1.8' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb index ccb40b1358939b0380f8e6de4d11eb785728bf98..110dff5cb7eee39836546f287536d2277073ef51 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gnutls' version = '3.1.8' diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.4.10-no-OFED.eb b/easybuild/easyconfigs/g/gompi/gompi-1.4.10-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..50c30a5ac2243b3bbe601b221909eea6eb2241e5 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.4.10-no-OFED.eb @@ -0,0 +1,26 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.4.10' +versionsuffix = '-no-OFED' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.7.2' +comp = (compname, compver) + +mpilib = 'OpenMPI' +mpiver = '1.6.4' + +# compiler toolchain dependencies +dependencies = [ + comp, + (mpilib, mpiver, versionsuffix, comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/gompi/gompi-1.5.14-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..62bfbf3784987e4b24bcdced8f676756495cf7ef --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.5.14-no-OFED.eb @@ -0,0 +1,26 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.5.14' +versionsuffix = '-no-OFED' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.2' +comp = (compname, compver) + +mpilib = 'OpenMPI' +mpiver = '1.6.5' + +# compiler toolchain dependencies +dependencies = [ + comp, + (mpilib, mpiver, versionsuffix, comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.5.14.eb b/easybuild/easyconfigs/g/gompi/gompi-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..c42da3fda1797af5fc4571080c500a2be79a9995 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.5.14.eb @@ -0,0 +1,25 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.5.14' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.2' +comp = (compname, compver) + +mpilib = 'OpenMPI' +mpiver = '1.6.5' + +# compiler toolchain dependencies +dependencies = [ + comp, + (mpilib, mpiver, '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb b/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..b1db91bda9785e6c4b5b4fe1118c7ca8d300e3dc --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb @@ -0,0 +1,22 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.5.16' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.3' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('OpenMPI', '1.6.5', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.7.20.eb b/easybuild/easyconfigs/g/gompi/gompi-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..62fc761f971e2c0ea1537bb63b4ffbc90a991c4c --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.7.20.eb @@ -0,0 +1,22 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.7.20' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.4' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('OpenMPI', '1.8.4', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2014b.eb b/easybuild/easyconfigs/g/gompi/gompi-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ebe311c4104d695441bad054952b59a3c5ec460a --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2014b.eb @@ -0,0 +1,25 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2014b' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.3' +comp = (compname, compver) + +mpilib = 'OpenMPI' +mpiver = '1.8.1' + +# compiler toolchain dependencies +dependencies = [ + comp, + (mpilib, mpiver, '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015a.eb b/easybuild/easyconfigs/g/gompi/gompi-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..149ce234a690021612e1a29baa3995f48aed02f2 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2015a.eb @@ -0,0 +1,22 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2015a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.9.2' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('OpenMPI', '1.8.4', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompic/gompic-2.6.10.eb b/easybuild/easyconfigs/g/gompic/gompic-2.6.10.eb index d0cc8743cee3b02424686e3a79485ed42d400c32..ee4c42cd44445ab86ee45f800a8ddb9ed708050e 100644 --- a/easybuild/easyconfigs/g/gompic/gompic-2.6.10.eb +++ b/easybuild/easyconfigs/g/gompic/gompic-2.6.10.eb @@ -9,10 +9,14 @@ description = """GNU Compiler Collection (GCC) based compiler toolchain along wi toolchain = {'name': 'dummy', 'version': 'dummy'} +comp_name = 'GCC' +comp_ver = '4.8.2' +comp = (comp_name, comp_ver) + # compiler toolchain dependencies dependencies = [ - ('GCC', '4.8.2'), # part of gcccuda - ('CUDA', '5.5.22'), # part of gcccuda + comp, # part of gcccuda + ('CUDA', '5.5.22', '', comp), # part of gcccuda ('OpenMPI', '1.7.3', '', ('gcccuda', version)), ] diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb index 6db3e7e4bd53e52e9d9a0d844185d504383623e2..f3f86925e6144e1a4df7df024c78b795daa2bf5c 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb index 44e93965c4516a56c9d8704f258907a8b8e7e83a..a0d26dcb607c38bed8b515b1998f6af791334261 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb index 566dfdf3afcb1e0a76c9775a1e36d6481f0d5d7b..8fa567fea41af57c4a76cd15ca4ac1107d034af3 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb index 0f904cafdd6c3da7da15ba462795d285f3c690ce..24f5fb84276b30c99cfb5ba498a73792b8df8e41 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.4.10-no-OFED.eb b/easybuild/easyconfigs/g/goolf/goolf-1.4.10-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..e7b5fd7db4482f235b1d4c5e82ef45d32940fb72 --- /dev/null +++ b/easybuild/easyconfigs/g/goolf/goolf-1.4.10-no-OFED.eb @@ -0,0 +1,38 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.4.10' +versionsuffix = '-no-OFED' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.7.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.6' +blas = '%s-%s' % (blaslib, blasver) +blas_suff = '-LAPACK-3.4.2' + +# toolchain used to build goolf-1.4.10-no-OFED dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s%s" % (version, versionsuffix) +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain dependencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('OpenMPI', '1.6.4', versionsuffix, comp), + (blaslib, blasver, blas_suff, comp_mpi_tc), + ('FFTW', '3.3.3', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blas_suff), comp_mpi_tc) +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/goolf/goolf-1.5.14-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..878a9f4474e1409c9b64659f336d32864d1842da --- /dev/null +++ b/easybuild/easyconfigs/g/goolf/goolf-1.5.14-no-OFED.eb @@ -0,0 +1,38 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.5.14' +versionsuffix = '-no-OFED' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.8' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s%s" % (version, versionsuffix) +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + ('GCC', '4.8.2'), + ('OpenMPI', '1.6.5', '-no-OFED', comp), # part of gompi + (blaslib, blasver, blassuff, comp_mpi_tc), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.5.14.eb b/easybuild/easyconfigs/g/goolf/goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..89526c2d6cdbfd8fe8cbe33cff96f5858503c3f5 --- /dev/null +++ b/easybuild/easyconfigs/g/goolf/goolf-1.5.14.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.5.14' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.8' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + ('GCC', '4.8.2'), + ('OpenMPI', '1.6.5', '', comp), # part of gompi + (blaslib, blasver, blassuff, comp_mpi_tc), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.7.20.eb b/easybuild/easyconfigs/g/goolf/goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..63245fe52b3ad77ed507e7519aaeca6740f065a0 --- /dev/null +++ b/easybuild/easyconfigs/g/goolf/goolf-1.7.20.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.7.20' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.4' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + ('GCC', '4.8.4'), + ('OpenMPI', '1.8.4', '', comp), # part of gompi-1.6.20 + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolfc/goolfc-1.3.12.eb b/easybuild/easyconfigs/g/goolfc/goolfc-1.3.12.eb index 96bdd2ddc917620ecacae3231b6b0d2bf50b08f1..42bed60891c3199ccaaa8e31ebf22f3701ffac4b 100644 --- a/easybuild/easyconfigs/g/goolfc/goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/g/goolfc/goolfc-1.3.12.eb @@ -32,7 +32,7 @@ dependencies = [ (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', blas, comp_mpi_tc), - ('CUDA', '5.0.35', '-1', True), + ('CUDA', '5.0.35', '-1', comp), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolfc/goolfc-1.4.10.eb b/easybuild/easyconfigs/g/goolfc/goolfc-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..518f253fa5a805e6bc946d362422b7a86133a70b --- /dev/null +++ b/easybuild/easyconfigs/g/goolfc/goolfc-1.4.10.eb @@ -0,0 +1,38 @@ +easyblock = "Toolchain" + +name = 'goolfc' +version = '1.4.10' + +homepage = '(none)' +description = """GCC based compiler toolchain with CUDA support, and including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.7.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.6' +blas = '%s-%s' % (blaslib, blasver) +blas_suff = '-LAPACK-3.4.2' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain dependencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('OpenMPI', '1.6.4', '', comp), # part of gompi-1.4.10 + (blaslib, blasver, blas_suff, comp_mpi_tc), + ('FFTW', '3.3.3', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blas_suff), comp_mpi_tc), + ('CUDA', '5.5.22', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolfc/goolfc-2.6.10.eb b/easybuild/easyconfigs/g/goolfc/goolfc-2.6.10.eb index 345bc66c0346be06a80bcd5f10b492201e1fb50c..94cb58316134eff363acb9ea5b7854f5c594895b 100644 --- a/easybuild/easyconfigs/g/goolfc/goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/g/goolfc/goolfc-2.6.10.eb @@ -9,6 +9,10 @@ description = """GCC based compiler toolchain __with CUDA support__, and includi toolchain = {'name': 'dummy', 'version': 'dummy'} +comp_name = 'GCC' +comp_ver = '4.8.2' +comp = (comp_name, comp_ver) + # toolchain used to build goolfc dependencies comp_mpi_tc_name = 'gompic' comp_mpi_tc_ver = version @@ -23,8 +27,8 @@ blas = '-%s-%s%s' % (blaslib, blasver, blassuff) # we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain # because of toolchain preperation functions dependencies = [ - ('GCC', '4.8.2'), # part of gompic - ('CUDA', '5.5.22'), # part of gompic + comp, # part of gompic + ('CUDA', '5.5.22', '', comp), # part of gompic ('OpenMPI', '1.7.3', '', ('gcccuda', version)), # part of gompic (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb index 72bf9736f867b81ecf7e4a4d8e64b5884d3324d3..a5318892cfa4b07fdb315a2603190e82708fbaed 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb index bad261c98a175b4d1aeb92d006f67c033a26a114..ef454942121a60f28c5c0f344fe86398df72523f 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb index 3a83b145507ac8d5e512a183b5cf4606ad685da4..574b337302a453601ea407d64e2ee0cf930eea3b 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb index 18fd84fe28d586949457b82e77a3a7288f2ddddc..c2990d170235a226ac7932a7a8828a8d24029b2b 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb index 5a3e833ff0427eff764bad5d1a1b1f83da2cbeec..096c2f555b26c6c566d528ee53f4e4f4ee43b8ee 100644 --- a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "gperftools" version = "2.1" diff --git a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb index bdbfa99fd8afeb19d155429f4a8f9299e4ea12e5..925e00b37336c57f1787d0233bbcdcce913507ac 100644 --- a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "gperftools" version = "2.1" diff --git a/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb b/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..a65b44153943c3f9f7032e5bd825149cf5ad0d7e --- /dev/null +++ b/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb @@ -0,0 +1,28 @@ +easyblock = "Toolchain" + +name = 'gpsmpi' +version = '2014.12' + + +homepage = '(none)' +description = """gcc and GFortran based compiler toolchain, + including Parastation MPICH2 for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpilib = 'psmpi' +mpiver = '5.1.0-1' + + +compname = 'GCC' +compver = '4.9.2' + +comp = (compname, compver) + +dependencies = [ + comp, + (mpilib, mpiver, '', comp ), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb b/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..5eacc9a99c2123dcff0651bac8885cc46a39d422 --- /dev/null +++ b/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb @@ -0,0 +1,36 @@ +easyblock = "Toolchain" + +name = 'gpsolf' +version = '2014.12' + +homepage = '(none)' +description = """gcc and GFortran based compiler toolchain, + ParaStation MPICH variant for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.12' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build dependencies +comp_mpi_tc_name = 'gpsmpi' +comp_mpi_tc_ver = version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('psmpi', '5.1.0-1', '', comp), # part of gpsmpi2 toolchain + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb b/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5921bc9256e946d06cff94ed350ad05c7817b24b --- /dev/null +++ b/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'grace' +version = '5.1.23' + +homepage = 'http://freecode.com/projects/grace' +description = """Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif.""" + +source_urls = ['ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2014b'} + +dependencies = [ + ('motif', '2.3.4'), + ('netCDF', '4.2.1.1'), +] + +runtest = 'tests' + +# we also need to run make links right before or after make install. +installopts = 'links' + +sanity_check_paths = { + 'files': ['bin/xmgrace'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb index 143a1050054a42d789c7395e9eaf068dcd455cf1..3251b6e5c57dc4aed22f53ddf792c9fb38fd005a 100644 --- a/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grep' version = '2.15' diff --git a/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb index b449082b000b469da144f9f71f8046ecc91e6744..268917c5ae8bf0a6a7544fc609480dea5fff8117 100644 --- a/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grep' version = '2.15' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb index d4a0f4a707c1bc70b4395127cf8144618e5d70fb..ffd2e3a7a6b38b432a606ae0ca844c3666297fc2 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.10.0' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb index 6dfcd4df79db7793939fc4605d26916f733442f2..8f6396f5b825af5b944ed1efd5cd7b3d38d88220 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.10.0' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb index 071d45e481b63618a0a33f5dd9c6fcb7ead7062a..ee472aa37273fd21f272bb51b379cb99473f1c33 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.10.0' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb index 7c24adf192fff9ef18172440be4867595337b720..5cea12d320bd02b03f168adc785696153fe6c0a8 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb index 34b1b6d0f096de8c8bd400be2c60881f4bca3542..8e5630b19cf6c34aa0f46afa817e73c25e7b1bcf 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb index d7f173a7dde31e6bff6d06555b156fbfe0dfaf39..2e926b4cab4f3127fd1bb4d24c83b671832e7a25 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb index 506c51621fb1884e09b6b59faa07fc3c7fcaea3a..831f1d1677c41735888b01eeda0f393cce1af7a3 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/gsl/gsl-1.9-10-intel-2014b-R-3.1.1.eb b/easybuild/easyconfigs/g/gsl/gsl-1.9-10-intel-2014b-R-3.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..616d9c30208019514b75e6d985a3814768dc38ca --- /dev/null +++ b/easybuild/easyconfigs/g/gsl/gsl-1.9-10-intel-2014b-R-3.1.1.eb @@ -0,0 +1,24 @@ +easyblock = 'RPackage' + +name = 'gsl' +version = '1.9-10' + +homepage = 'http://cran.r-project.org/web/packages/gsl' +description = """An R wrapper for the special functions and quasi random number generators of the Gnu Scientific + Library (GSL).""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cran.r-project.org/src/contrib/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.1.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ('GSL', '1.16'), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb index 9596baa7ba8c2fc38def3ff1b57f4b158a6e34f7..17fa80e4dfa8120878e3ce38eadf03461d44b70c 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb index 215f5b7322dc4ee4d132648519104560153368e6..80c9c684315e7d6bdb73407d3249c3fb41a53bea 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb index 517a4e55493fd132f2e4423f3ede6417b5aec27d..67e9066e3ce679d5f24d3a83b862798c0608c50f 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb index 1db90196a22c3698d0036cc01122e3bca9a86971..18eb7970f8af91dcf4966a33a5d8c8416ff136d6 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb index 5457e6d892bc66e183cbaeed459bde8f5f08929c..96eb4d4a94eacfadd401be6914af310f3421296d 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb index 7949d851ed6fb6984cd9d21856ef88192d99d0ce..627ddf488dec23f6ecdbcd4f5d674519e8843628 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb index acb7e90d49ad4fc811b7d98842e96597f06c8b0a..282fc7aa9f07327a3b0145405a62383bbaa9d35a 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb index 78ba03289396142b3b60ab48c1198022ac4fdfac..04f20070136e0a51ce7f05c377993cbf2f6c037b 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb index 5cff62f0ca2006d020a77e8173a8da055237b400..2072304457c43c13088d55f82b7ac262a55c23ca 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb index 2fe7409a9e1ff7961595b3209a639e5c11e564f3..34e650a01462a5cc21c5e923cc97d4b3545bef70 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb index 42edcfbbc889b21760201362fdda04dc98a3da11..677ec0c4a607fe02b0ed8d254951b7d201edfcb8 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..287abca2e5c1af689979858473a84059839cc342 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'goolf', 'version': '1.4.10-no-OFED'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = ['http://ftpmirror.gnu.org/gzip'] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..e4663d467a4777adc3ad7a838bf85314f36b7060 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC +# Authors:: Thekla Loizou +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html +## + +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'goolf', 'version': '1.5.14-no-OFED'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..87a654b58ca96c79c59e555370e13f048f17dceb --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC +# Authors:: Thekla Loizou +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html +## + +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb index 8aefa658ebb1113d1fdb5f2d821b71abdfb2ed5a..86cfca091f8f2b2dbe7e5e9cf58715faa2001329 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..53a369c2e4397d937b00c6687fc33970f43f52a2 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'goolfc', 'version': '1.4.10'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = ['http://ftpmirror.gnu.org/gzip'] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb index 21e29f76c920c98cfee2c05cfdaedaa05030aeff..d309818ed8d3b46fdb9f4ea65f58622003c32450 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f29b035e2976d87dde2ca1dddd50f1930f43e67 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC +# Authors:: Thekla Loizou +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html +## + +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = ['http://ftpmirror.gnu.org/gzip'] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..036f697797d78556b11fd908d0bf18a111846b4b --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright (c) 2012-2013 Cyprus Institute / CaSToRC +# Authors:: Thekla Loizou +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html +## + +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = ['http://ftpmirror.gnu.org/gzip'] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..4c7117a6e29b29fc368acf26e5e48e5c6fe093d8 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'iomkl', 'version': '6.6.2'} + +# eg. http://ftp.gnu.org/gnu/gzip/gzip-1.6.tar.gz +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +# run 'gzip -h' and 'gzip --version' after installation +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb index e995d9cfbc473382fd6ada624f88d244477f60ec..5cdf92f035541cfe3317133e862ce009ca817810 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb index 144aadbb344382da4a3612e640d17e5b149a6873..49d7098c878710ad31eacf34082f1ecc8471bef2 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb index 0a219c43cbf256a966be853e8ed69619417fd6a8..6de0d3d8d3aa53bd540fda7d95c5c72477842d89 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb index e44680caf15e57c1398118859ed5d1c417fa912b..46c998562cdf1cbeb1ca1f786e6891ca86f453f4 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb index f40a9827426d570788996dbe834e711766420f7d..b955c4abf7a5b35cd2dcf579c2cda40df6723523 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.8' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb index 1c4c00dc0188244e16c6f2072341fdd2919b8fea..c9f730872f6f4006d0b4d05cb59a1318add4d337 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.8' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb index 7a34de4b31cade331854a339284673b4ae8af942..6866cddf63e8649a6b3e3d333e96f67e9fdc88d9 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.8' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs-mt.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs-mt.eb index 3003f14877a6e2c9e6021d4447912b6041df4be5..7e8c9f329bc3df107f8ba01a06a7ea3b62220982 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs-mt.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs-mt.eb @@ -25,6 +25,6 @@ dependencies = [ configopts = "--enable-gpfs --enable-threadsafe --enable-production " preconfigopts = 'export FFLAGS="-fopenmp $FFLAGS" && export F90FLAGS="-fopenmp $F90FLAGS" && ' -premakeopts = 'export FFLAGS="-fopenmp $FFLAGS" && export F90FLAGS="-fopenmp $F90FLAGS" && ' +prebuildopts = 'export FFLAGS="-fopenmp $FFLAGS" && export F90FLAGS="-fopenmp $F90FLAGS" && ' moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb new file mode 100644 index 0000000000000000000000000000000000000000..eec3211c353abae142e00d13efbc91851328eaf5 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-5.5.0-gpfs.eb @@ -0,0 +1,27 @@ +name = 'HDF5' +version = '1.8.10' +versionsuffix = "-gpfs" + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management + of extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5_%(version)s_configure_ictce.patch', + 'HDF5-%(version)s_mpi-includes_order_fix.patch' +] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +configopts = "--enable-gpfs" + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb new file mode 100644 index 0000000000000000000000000000000000000000..62eff2e443c3115ec6e57ccf84fc236d19690bca --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb @@ -0,0 +1,27 @@ +name = 'HDF5' +version = '1.8.10' +versionsuffix = "-gpfs" + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management + of extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5_%(version)s_configure_ictce.patch', + 'HDF5-%(version)s_mpi-includes_order_fix.patch', +] + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip','2.1'), +] + +configopts = "--enable-gpfs" + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..89abbbefcff3d66c333485ee0bb2d3c134e149dd --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +name = 'HDF5' +version = '1.8.10-patch1' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'configure_libtool.patch', + 'HDF5-1.8.9_mpi-includes_order_fix.patch', +] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..a0a7586662d76d369ebaf4521b8f21027c8bbaa9 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb @@ -0,0 +1,22 @@ +name = 'HDF5' +version = '1.8.12' +versionsuffix = '-zlib-1.2.7' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['configure_libtool.patch'] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..b13df6dfc31da737285e8325fb7716f92d701223 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.12' +versionsuffix = '-zlib-1.2.7' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.12_configure_ictce.patch', + 'configure_libtool.patch', + 'HDF5-%(version)s_mpi-includes_order_fix.patch', +] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e20cda0940175f4c6874c245673aaf0737579fc5 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.13' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-%(version)s_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..16f7a037760d6d337d246e37900524a9346e787b --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.13' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-%(version)s_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13_configure_intel.patch b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13_configure_intel.patch new file mode 100644 index 0000000000000000000000000000000000000000..1bb0ecf5e3080f209433d4544fca8c0383b2772f --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13_configure_intel.patch @@ -0,0 +1,131 @@ +--- configure.orig 2014-05-06 04:15:52.000000000 +0200 ++++ configure 2014-07-23 11:21:47.616743649 +0200 +@@ -5399,7 +5399,7 @@ + ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' + ac_compiler_gnu=$ac_cv_fc_compiler_gnu + if test -n "$ac_tool_prefix"; then +- for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 ++ for ac_prog in gfortran g95 xlf95 f95 fort ifort mpif77 mpif90 ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. + set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +@@ -5443,7 +5443,7 @@ + fi + if test -z "$FC"; then + ac_ct_FC=$FC +- for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 ++ for ac_prog in gfortran g95 xlf95 f95 fort ifort mpif77 mpif90 ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + do + # Extract the first word of "$ac_prog", so it can be a program name with args. + set dummy $ac_prog; ac_word=$2 +@@ -5672,7 +5672,7 @@ + ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' + ac_compiler_gnu=$ac_cv_fc_compiler_gnu + if test -n "$ac_tool_prefix"; then +- for ac_prog in f90 pgf90 slf90 f95 g95 xlf95 efc ifort ftn ++ for ac_prog in f90 pgf90 slf90 f95 g95 xlf95 efc ifort mpif77 mpif90 ftn + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. + set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +@@ -5716,7 +5716,7 @@ + fi + if test -z "$FC"; then + ac_ct_FC=$FC +- for ac_prog in f90 pgf90 slf90 f95 g95 xlf95 efc ifort ftn ++ for ac_prog in f90 pgf90 slf90 f95 g95 xlf95 efc ifort mpif77 mpif90 ftn + do + # Extract the first word of "$ac_prog", so it can be a program name with args. + set dummy $ac_prog; ac_word=$2 +@@ -7908,7 +7908,7 @@ + mpicc) + ## The mpich compiler. Use mpiexec from the same directory if it + ## exists. +- PARALLEL=mpicc ++ PARALLEL="$CC_BASENAME" + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpiexec" >&5 + $as_echo_n "checking for mpiexec... " >&6; } + +@@ -7970,7 +7970,7 @@ + *mpif90*) + ## The Fortran mpich compiler. Use mpiexec from the same directory + ## if it exists. +- PARALLEL=mpif90 ++ PARALLEL="$FC" + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for mpiexec" >&5 + $as_echo_n "checking for mpiexec... " >&6; } + +@@ -12704,7 +12704,7 @@ + ;; + # icc used to be incompatible with GCC. + # ICC 10 doesn't accept -KPIC any more. +- icc* | ifort*) ++ icc* | mpicc*| ifort* | mpif77* | mpif90*) + lt_prog_compiler_wl='-Wl,' + lt_prog_compiler_pic='-fPIC' + lt_prog_compiler_static='-static' +@@ -13340,11 +13340,11 @@ + # Portland Group f77 and f90 compilers + whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive' + tmp_addflag=' $pic_flag -Mnomain' ;; +- ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 ++ ecc*,ia64* | icc*,ia64* | mpicc*,ia64*) # Intel C compiler on ia64 + tmp_addflag=' -i_dynamic' ;; +- efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64 ++ efc*,ia64* | ifort*,ia64* | mpif77*,ia64* | mpif90*,ia64*) # Intel Fortran compiler on ia64 + tmp_addflag=' -i_dynamic -nofor_main' ;; +- ifc* | ifort*) # Intel Fortran compiler ++ ifc* | ifort* | mpif77* | mpif90*) # Intel Fortran compiler + tmp_addflag=' -nofor_main' ;; + lf95*) # Lahey Fortran 8.1 + whole_archive_flag_spec= +@@ -13826,7 +13826,7 @@ + link_all_deplibs=yes + allow_undefined_flag="$_lt_dar_allow_undefined" + case $cc_basename in +- ifort*) _lt_dar_can_shared=yes ;; ++ ifort* | mpif77* | mpif90*) _lt_dar_can_shared=yes ;; + *) _lt_dar_can_shared=$GCC ;; + esac + if test "$_lt_dar_can_shared" = "yes"; then +@@ -16824,7 +16824,7 @@ + link_all_deplibs_CXX=yes + allow_undefined_flag_CXX="$_lt_dar_allow_undefined" + case $cc_basename in +- ifort*) _lt_dar_can_shared=yes ;; ++ ifort* | mpif77* | mpif90*) _lt_dar_can_shared=yes ;; + *) _lt_dar_can_shared=$GCC ;; + esac + if test "$_lt_dar_can_shared" = "yes"; then +@@ -19735,7 +19735,7 @@ + ;; + # icc used to be incompatible with GCC. + # ICC 10 doesn't accept -KPIC any more. +- icc* | ifort*) ++ icc* | mpicc* | ifort* | mpif77* | mpif90*) + lt_prog_compiler_wl_FC='-Wl,' + lt_prog_compiler_pic_FC='-fPIC' + lt_prog_compiler_static_FC='-static' +@@ -20356,11 +20356,11 @@ + # Portland Group f77 and f90 compilers + whole_archive_flag_spec_FC='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive' + tmp_addflag=' $pic_flag -Mnomain' ;; +- ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 ++ ecc*,ia64* | icc*,ia64* | mpicc*,ia64*) # Intel C compiler on ia64 + tmp_addflag=' -i_dynamic' ;; +- efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64 ++ efc*,ia64* | ifort*,ia64* | mpif77*,ia64* | mpif90*,ia64*) # Intel Fortran compiler on ia64 + tmp_addflag=' -i_dynamic -nofor_main' ;; +- ifc* | ifort*) # Intel Fortran compiler ++ ifc* | ifort* | mpif77* | mpif90*) # Intel Fortran compiler + tmp_addflag=' -nofor_main' ;; + lf95*) # Lahey Fortran 8.1 + whole_archive_flag_spec_FC= +@@ -20814,7 +20814,7 @@ + link_all_deplibs_FC=yes + allow_undefined_flag_FC="$_lt_dar_allow_undefined" + case $cc_basename in +- ifort*) _lt_dar_can_shared=yes ;; ++ ifort* | mpif77* | mpif90*) _lt_dar_can_shared=yes ;; + *) _lt_dar_can_shared=$GCC ;; + esac + if test "$_lt_dar_can_shared" = "yes"; then diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb new file mode 100644 index 0000000000000000000000000000000000000000..8ffb9102ba013a74e03685138205f58847db9606 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb @@ -0,0 +1,27 @@ +name = 'HDF5' +version = '1.8.14' +versionsuffix = '-serial' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d8a6788d392326f1f1891d370a9b274ca4c2211 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.14' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb new file mode 100644 index 0000000000000000000000000000000000000000..081c94297ddd33ad48811872beb4006d5af52e9b --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb @@ -0,0 +1,28 @@ +name = 'HDF5' +version = '1.8.14' +versionsuffix = '-gpfs' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +configopts = "--enable-gpfs" +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb new file mode 100644 index 0000000000000000000000000000000000000000..0db92859a227a8207c565edc221a4015fc4f0439 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb @@ -0,0 +1,25 @@ +name = 'HDF5' +version = '1.8.14' +versionsuffix = '-serial' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..3414ef7bde98f5aa9243772407b02dbc7b3b504c --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb @@ -0,0 +1,23 @@ +name = 'HDF5' +version = '1.8.7' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['configure_libtool.patch'] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +buildopts = 'V=1 CFLAGS="$CFLAGS -std=c99"' + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index cfc72f34819b31e9c18de36b12e60f47968ca70f..c29c1cc257be4a19b851286f946db2f1baf28a9f 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "HH-suite" version = "2.0.16" diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index ecfd3c028b9b877471c4a8e8bf5d44c8310b5d47..6fd5c2e8bfc395919ae72fa9d922aef274f60617 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "HH-suite" version = "2.0.16" diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index b8990992139e6188f4a7c71a70928b6f9e556318..3879fe81ad06dbe531e29b4bf96a315229bcbdb8 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index 226546327a283ffe7a5e9c397c087669c2017dc1..2c24669f8fc5c9b67fc91d198623720d6008dd37 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index 44eaaef54e466648b3c43a454ff5f35a5e94ebbb..43301b81dcfae3558e831b904bc97251fbf4359f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index 045a6f4d074b825fb3f37984cb1b49f0aa61b4cf..11e40f315c84681d4fe4818cc28a6d16c2fc9e40 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index a151c82ad9b09d65c1aaf1f3348c032739065d90..35d93e8b65b8611dcb589564e63e925ce6f5579b 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Nils Christian , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.1b1' @@ -23,13 +25,17 @@ description = """HMMER is used for searching sequence databases for homologs of came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.""" -toolchain = {'version': '1.4.10', 'name': 'goolf'} +toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz'] source_urls = ['http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/'] -patches = ['hmmer-3.1b1_link-LIBS-utests.patch'] +patches = ['hmmer-%(version)s_link-LIBS-utests.patch'] + +installopts = ' && cd easel && make install' + sanity_check_paths = { - 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], + 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", + "esl-alimap", "esl-cluster", "esl-mask"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index b4aea66fc91d72d9c44c91f853289b35310f2d8a..6b7248a777fe59c9cdbec725c6fdcd8bdf5139c9 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Nils Christian , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.1b1' @@ -23,13 +25,17 @@ description = """HMMER is used for searching sequence databases for homologs of came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.""" -toolchain = {'version': '5.3.0', 'name': 'ictce'} +toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz'] source_urls = ['http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/'] -patches = ['hmmer-3.1b1_link-LIBS-utests.patch'] +patches = ['hmmer-%(version)s_link-LIBS-utests.patch'] + +installopts = ' && cd easel && make install' + sanity_check_paths = { - 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], + 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", + "esl-alimap", "esl-cluster", "esl-mask"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..b56baf902e770cfe966e1549053e9554f9a5a052 --- /dev/null +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'HMMER' +version = '3.1b1' + +homepage = 'http://hmmer.janelia.org/' +description = """HMMER is used for searching sequence databases for homologs of protein sequences, + and for making protein sequence alignments. It implements methods using probabilistic models + called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other + sequence alignment and database search tools based on older scoring methodology, + HMMER aims to be significantly more accurate and more able to detect remote homologs + because of the strength of its underlying mathematical models. In the past, this strength + came at significant computational expense, but in the new HMMER3 project, HMMER is now + essentially as fast as BLAST.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz'] +source_urls = ['http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/'] +patches = ['hmmer-%(version)s_link-LIBS-utests.patch'] + +installopts = ' && cd easel && make install' + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", + "esl-alimap", "esl-cluster", "esl-mask"]], + 'dirs': [] +} + +runtest = 'check' + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 86ef1ed180b4b9adaf2fdef92c546a2489be5e75..1919d75c768578a9a62a735bd2acfd237783cd84 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index a7271f599b9cee23f0e13d8f7408d0cff0709fb0..07974e95afe3076cc05d353108ada3150a499ab4 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -35,7 +35,7 @@ dependencies = [ ('biodeps', '1.6'), ('CD-HIT', '4.5.4', '-2011-03-07'), ('ClustalW2', '2.1'), -# ('Cufflinks', '2.0.2'), + ('Cufflinks', '2.0.2'), ('EMBOSS', '6.5.7'), ('FASTA', '36.3.5e'), ('FASTX-Toolkit', '0.0.13.2'), diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 3a09a609665b1a5c8f811febe1d20cfbc6b32135..5e0919b8d25afdd30b7f1c60ec9eda5dc4daf96b 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index 8b2a4995ff0aa7b8e2fa155bcda7dacddc69a5b0..105b0630d608a05c737bd730cced9463d2d0719e 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index dc22e82ed1cbf15aa66a9c15b096920c81c36db4..20fb4bbb290b90253883b4ec83132057c9db9bc8 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index dbb7fbafb0b2038cf3e72864096d13b0d95468c3..56ceb7f56dda50371eb2912da3f21c6256b20910 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index 5819484e12c2fa49b36f9b29f282c058ec26ebdd..ca6cb154bbc1417f3b04157714990ced6e884d78 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -27,6 +27,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} dependencies = [ ('PETSc', '3.3-p2', '-Python-2.7.3'), ('GSL', '1.15'), + ('SPRNG', '2.0b'), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index df7070070f5956ef3f3e840d3a0c00176167f6f4..c4fa0cbf6c9f7f73722afe999a4f8d16263b30a8 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -24,7 +24,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} dependencies = [ ('PETSc', '3.3-p2', '-Python-2.7.3'), - ('GSL', '1.15') + ('GSL', '1.15'), + ('SPRNG', '2.0b'), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index b9bf688a4ddf988c451c7b550d336f6127b9f53c..8febd4d488b1e45a382e245b40d78003875b729a 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCG/HPCG-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCG/HPCG-2.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..06eaeceafd5d35c93701c11d4bc29b8a3146796b --- /dev/null +++ b/easybuild/easyconfigs/h/HPCG/HPCG-2.1-goolf-1.4.10.eb @@ -0,0 +1,14 @@ +name = 'HPCG' +version = '2.1' + +homepage = 'https://software.sandia.gov/hpcg' +description = """The HPCG Benchmark project is an effort to create a more relevant metric for ranking HPC systems than + the High Performance LINPACK (HPL) benchmark, that is currently used by the TOP500 benchmark.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True, 'openmp': True} + +source_urls = ['https://software.sandia.gov/hpcg/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/h/HPCG/HPCG-2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/h/HPCG/HPCG-2.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d3f7c2d895a29909697c522f95d327487892da7 --- /dev/null +++ b/easybuild/easyconfigs/h/HPCG/HPCG-2.1-ictce-5.5.0.eb @@ -0,0 +1,14 @@ +name = 'HPCG' +version = '2.1' + +homepage = 'https://software.sandia.gov/hpcg' +description = """The HPCG Benchmark project is an effort to create a more relevant metric for ranking HPC systems than + the High Performance LINPACK (HPL) benchmark, that is currently used by the TOP500 benchmark.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'usempi': True, 'openmp': True} + +source_urls = ['https://software.sandia.gov/hpcg/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2014b.eb b/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..576cc9a69949f30bbb82ee4bdad34a36f7e084f8 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2014b.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.0' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..225cb3be6afaecf674911b582df7b19440ab5170 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gimkl-1.5.9.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gimkl-1.5.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa026677cfc8b57358fb2f6b340ee8655c6ee6aa --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gimkl-1.5.9.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'gimkl', 'version': '1.5.9'} +toolchainopts = {'optarch': True, 'usempi': True, 'openmp': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..61f8974999921ee644f84dcdb213a59623f543ae --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..fd109a8fed784e12f63123c33bcea17e86e0bec7 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.7.20.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolfc-1.4.10.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolfc-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..cdb3929ac48a17c55bbb49a924f5badd1f56a3a2 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolfc-1.4.10.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'goolfc', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolfc-2.6.10.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolfc-2.6.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..87b24d14b72b18d8b0dbeaf7a7a1d7e53981078e --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolfc-2.6.10.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'goolfc', 'version': '2.6.10'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..26abf7963c7d3f98b8443b31af1afec3949e1ba6 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb @@ -0,0 +1,17 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" +toolchain = {'name': 'gpsolf', 'version': '2014.12'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-6.3.5.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..b69f26b84b4f71f4c938454b23d57120bb8ea49a --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-6.3.5.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..92f6036e1cd824ff35a102d80b2bb7a1494ad9e7 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.1.2.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..4c3646267b9389f92cded910602f7ebae3d22d3c --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2014.10'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..4e8b4379819c8c4691c8dda217812831dcd6054b --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2014.11'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014b.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..07ff11637e2920a58d1c05743d8e32f7b7287786 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..97b6ceedd37022a3fa7cab20ebd576009f904a4f --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..b56af425fea1870530acec7386bba8aa81403fef --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" +toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb new file mode 100644 index 0000000000000000000000000000000000000000..e2c8df3cc68517ddbc2ac4509234ff85bfd786ce --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'iomkl', 'version': '2015.01'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..467ed7ee6db74041aa08bb4930e1c6c79717b708 --- /dev/null +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb @@ -0,0 +1,29 @@ +easyblock = "PythonPackage" + +name = 'HTSeq' +version = '0.5.4p5' + +homepage = 'http://www-huber.embl.de/users/anders/HTSeq/' +description = """A framework to process and analyze data from high-throughput sequencing (HTS) assays""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://pypi.python.org/packages/source/H/HTSeq/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.3' +pyshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) +eggname = '%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % pyshortver + +dependencies = [(python, pythonver)] + +sanity_check_paths = { + 'files': ["bin/htseq-count", "bin/htseq-qa"], + 'dirs': ["lib/python%s/site-packages/%s" % (pyshortver, eggname)], +} + +options = {'modulename': '%(name)s'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..d593001ecd35d0a68ecf2c69b8abc8071bc713ce --- /dev/null +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb @@ -0,0 +1,29 @@ +easyblock = "PythonPackage" + +name = 'HTSeq' +version = '0.5.4p5' + +homepage = 'http://www-huber.embl.de/users/anders/HTSeq/' +description = """A framework to process and analyze data from high-throughput sequencing (HTS) assays""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = ['https://pypi.python.org/packages/source/H/HTSeq/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.3' +pyshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) +eggname = '%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % pyshortver + +dependencies = [(python, pythonver)] + +sanity_check_paths = { + 'files': ["bin/htseq-count", "bin/htseq-qa"], + 'dirs': ["lib/python%s/site-packages/%s" % (pyshortver, eggname)], +} + +options = {'modulename': '%(name)s'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..478d636658657b704604d1f9679d56f9b21f0909 --- /dev/null +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,29 @@ +easyblock = "PythonPackage" + +name = 'HTSeq' +version = '0.5.4p5' + +homepage = 'http://www-huber.embl.de/users/anders/HTSeq/' +description = """A framework to process and analyze data from high-throughput sequencing (HTS) assays""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['https://pypi.python.org/packages/source/H/HTSeq/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.6' +pyshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) +eggname = '%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % pyshortver + +dependencies = [(python, pythonver)] + +sanity_check_paths = { + 'files': ["bin/htseq-count", "bin/htseq-qa"], + 'dirs': ["lib/python%s/site-packages/%s" % (pyshortver, eggname)], +} + +options = {'modulename': '%(name)s'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..93dfcd4cac2fa659f57632f554352a104177403f --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """ A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [('http://sourceforge.net/projects/samtools/files/samtools/%(version)s', 'download')] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('zlib', '1.2.8')] + +parallel = 1 + +skipsteps = ['configure'] + +installopts = ' prefix=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ba609bc0fdba65c496d6deae0d5e944f6c127c16 --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'HarfBuzz' +version = '0.9.35' + +homepage = 'http://www.harfbuzz.org/' +description = """HarfBuzz is an OpenType text shaping engine.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('cairo', '1.12.18'), + ('GObject-Introspection', '1.42.0'), +] + +patches = ['HarfBuzz-%(version)s_config.patch'] + +configopts = '--with-gobject --enable-introspection=yes ' + +sanity_check_paths = { + 'files': ['lib/libharfbuzz.so', 'bin/hb-view'], + 'dirs': [] +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch new file mode 100644 index 0000000000000000000000000000000000000000..492fdbe7e8aff20c5ce2c0debc118a042fbf5f57 --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch @@ -0,0 +1,14 @@ +# icu-config --ldflags-searchpath --ldflags-libsonly gives a two line answer +# the modification makes it one line +# By B. Hajgato September 5th 2014 +--- harfbuzz-0.9.35/configure.orig 2014-08-13 18:44:10.713184868 +0200 ++++ harfbuzz-0.9.35/configure 2014-09-05 16:33:00.317056171 +0200 +@@ -18478,7 +18478,7 @@ + # necessarily want, like debugging and optimization flags + # See man (1) icu-config for more info. + ICU_CFLAGS=`$ICU_CONFIG --cppflags` +- ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath --ldflags-libsonly` ++ ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath --ldflags-libsonly | sed ':a;N;$!ba;s/\n/ /g'` + + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb index 53ea95f6f3798fb66d56a76ca7634f014fe2ba36..85cb6ef13e9230d237531eb3d6c5f4d916067287 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb index 0462e08a31cc3328ebca4a01304f54f3e94f5638..d46bdf73671d606a14163ce92c3830d6806a7a0d 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb index 57b245c9a656c8e73d7fe03f8dcd31c623dc8658..6b132f600a6a7a7e9045a6205cbae6ceff94a5d5 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb index eae6a86d123902c815a966d73e0ca47b186b8dbc..44e47d185bd9228687d22902455a1720cd6014cd 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.9.0b-intel-2014b.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.9.0b-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..b31a9413c485f7c62700c5b746e95ab72fa4b43b --- /dev/null +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.9.0b-intel-2014b.eb @@ -0,0 +1,24 @@ +name = "Hypre" +version = "2.9.0b" + +homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html" +description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. + The problems of interest arise in the simulation codes being developed at LLNL and elsewhere + to study physical phenomena in the defense, environmental, energy, and biological sciences.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = ["https://computation.llnl.gov/casc/hypre/download/"] +sources = [SOURCELOWER_TAR_GZ] + +patches = ["hypre_%(version)s_with_blas_lapack.patch"] + +start_dir = "src" + +sanity_check_paths = { + 'files': ['lib/libHYPRE.a'], + 'dirs': ['include'] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/h/Hypre/hypre_2.9.0b_with_blas_lapack.patch b/easybuild/easyconfigs/h/Hypre/hypre_2.9.0b_with_blas_lapack.patch new file mode 100644 index 0000000000000000000000000000000000000000..c3876a794ebf6cc93515c10737987eb0bd06a738 --- /dev/null +++ b/easybuild/easyconfigs/h/Hypre/hypre_2.9.0b_with_blas_lapack.patch @@ -0,0 +1,34 @@ +# External BLAS/LAPACK used, no need to build Hypre provided ones. +# Without deleting those lines, make complains about non-existing hypre provided BLAS/LAPACK object files +# B. Hajgato 04/08/2014 +--- hypre-2.9.0b/src/lib/Makefile.orig 2012-05-26 01:54:08.000000000 +0200 ++++ hypre-2.9.0b/src/lib/Makefile 2014-07-24 13:45:56.309096985 +0200 +@@ -32,8 +32,6 @@ + STRUCTLSFILES = ${HYPRE_SRC_TOP_DIR}/struct_ls/*.o + STRUCTMVFILES = ${HYPRE_SRC_TOP_DIR}/struct_mv/*.o + UTILITIESFILES = ${HYPRE_SRC_TOP_DIR}/utilities/*.o +-BLASFILES = ${HYPRE_SRC_TOP_DIR}/blas/*.o +-LAPACKFILES = ${HYPRE_SRC_TOP_DIR}/lapack/*.o + + FILES_HYPRE = \ + $(SUPERLUFILES)\ +@@ -55,9 +53,7 @@ + $(SSTRUCTMVFILES)\ + $(STRUCTLSFILES)\ + $(STRUCTMVFILES)\ +-$(UTILITIESFILES)\ +-$(BLASFILES)\ +-$(LAPACKFILES) ++$(UTILITIESFILES) + + SONAME = libHYPRE-${HYPRE_RELEASE_VERSION}.so + SOLIBS = ${MPILIBDIRS} ${MPILIBS} ${LAPACKLIBDIRS} ${LAPACKLIBS}\ +@@ -103,8 +99,6 @@ + ${AR} $@ $(STRUCTLSFILES) + ${AR} $@ $(STRUCTMVFILES) + ${AR} $@ $(UTILITIESFILES) +- ${AR} $@ $(BLASFILES) +- ${AR} $@ $(LAPACKFILES) + ${RANLIB} $@ + + libHYPRE.so: ${FILES_HYPRE} diff --git a/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb b/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb index 9701129849095a689073a06baec0d6c10022d35b..5f42f6f666f605dfb39dd15985f0b4b9ecd92438 100644 --- a/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb +++ b/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb @@ -18,3 +18,5 @@ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['h5toh4', 'h5toh4']], 'dirs': [], } + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..9852693c1580b5bcca42c37d7cee17cdd71eb5ce --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -0,0 +1,37 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.2.1' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +# make sure that MPI features are enabled (new in h5py v2.2) +buildopts = '--mpi' + +dependencies = [ + (python, pythonver), + ('HDF5', '1.8.12', '-zlib-1.2.7'), + ('mpi4py', '1.3', versionsuffix), # required for MPI support + ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pythonshortver], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..7f4bdd782b9df3a9aa303f2b97efb61e3c3c7935 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,37 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.2.1' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +# make sure that MPI features are enabled (new in h5py v2.2) +buildopts = '--mpi' + +dependencies = [ + (python, pythonver), + ('HDF5', '1.8.12', '-zlib-1.2.7'), + ('mpi4py', '1.3', versionsuffix), # required for MPI support + ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pythonshortver], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-5.5.0-Python-2.7.5.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-5.5.0-Python-2.7.5.eb index fd76fc37b546ca76ba485a62336309b5ac46a042..5610dd7d9e18c1ce2fc1f665e31368c9d4d810b9 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-5.5.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-5.5.0-Python-2.7.5.eb @@ -20,7 +20,7 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) # make sure that MPI features are enabled (new in h5py v2.2) -makeopts = '--mpi' +buildopts = '--mpi' dependencies = [ (python, pythonver), diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb index 98a7dfc4b2ce9a577b2c02f02932a3adce1be729..c8bbf3c141ce322fc4afd23c07c16bb09e709162 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb index a99b79c02f2c750e7ce11349de015912e10f65fa..2c3932e7b7e9860908d2b2199c233fe356149b1f 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb index 01ce6cafa3f6e52f663e1d1a48b27e7e53841fbd..ed7d1cacaa3e1de5ca1c6f85aba0920b354ad377 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb index f7f33b20cd21c8eae7bd457812c7c06c1891fe68..975690f50fde970d48d2f5fadcfa069d31bc7a6f 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb index 681e2b237167cd684e402dfd4239ab9b7c482d2b..944bc27a5ec17eab134de543750e5ef3a3d0bbd2 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.1'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb index 5a976445f47b1389c12391915d8caabb17b4ac27..20b6060452fd8d20eeec1916bead400bd7247371 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.1'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb index 626c3d8f371ed31ddff6f234ccceb791093a9613..778a209cabe0c147c85cf62c19ea29f6027b4c18 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb index 7ddb3a0d2d317b9529db1b0eca7d8ae420fcda29..1b68798b3f4a51813ee659a3bda2b62bc4b557cf 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb index 09b7559075037621915a61218c14bd96e5460c9e..3f0df333bf499fe295792152f0d71a54dc38d4e6 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb index 73a3298222d98c50bad7a10ec0700b4bcba11e0b..fcd8a85a502c50205519ec8ffd56b895a3f8b471 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..d1f6974e2a78b42372ffcea15604a3104109a6ea --- /dev/null +++ b/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -0,0 +1,38 @@ +easyblock = "PythonPackage" + +name = 'horton' +version = '1.2.1' + +homepage = 'http://theochem.github.io/horton' +description = """Horton is a development platform for electronic structure methods.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/theochem/horton/releases/download/%s' % version] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.3' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('Cython', '0.19.1', versionsuffix), + ('h5py', '2.2.1', versionsuffix), + ('matplotlib', '1.2.1', versionsuffix), + ('sympy', '0.7.2', versionsuffix), + ('Libint', '2.0.3'), + ('libxc', '2.0.3'), +] + +# disable tests that require X11 by specifying "backend: agg" in matplotlibrc +runtest = 'export MATPLOTLIBRC=$PWD; echo "backend: agg" > $MATPLOTLIBRC/matplotlibrc; python setup.py build_ext -i; nosetests -v' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/horton' % pythonshortversion] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..0379bf75564b754199abab7a83c6a046984851d5 --- /dev/null +++ b/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,38 @@ +easyblock = "PythonPackage" + +name = 'horton' +version = '1.2.1' + +homepage = 'http://theochem.github.io/horton' +description = """Horton is a development platform for electronic structure methods.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = ['https://github.com/theochem/horton/releases/download/%s' % version] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.3' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('Cython', '0.19.1', versionsuffix), + ('h5py', '2.2.1', versionsuffix), + ('matplotlib', '1.2.1', versionsuffix), + ('sympy', '0.7.2', versionsuffix), + ('Libint', '2.0.3'), + ('libxc', '2.0.3'), +] + +# disable tests that require X11 by specifying "backend: agg" in matplotlibrc +runtest = 'export MATPLOTLIBRC=$PWD; echo "backend: agg" > $MATPLOTLIBRC/matplotlibrc; python setup.py build_ext -i; nosetests -v' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/horton' % pythonshortversion] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..f86d5d11abd0a82d2b52d52b4dc0f689ca1240cb --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.10.0' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [('numactl', '2.0.10')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..6adec23e7104d57098d8b5e48ca9b961af8da3d6 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.10.0' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' + diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..6adedf3a5dd1de5e83439e455ff3ce5499a0dd71 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = "1.10.1" + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('numactl', '2.0.10')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb index 2589f07d49d47f68cff35420e600581a7ff75ce9..83008d4b9ba5f7faab4413e9a670ccae65565d00 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.5.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb index 4255032ed4f9f822efbc91fa9c1342c524dd4648..12046c63a25fc61f10896f3a7f70d0f57c166db2 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.5.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb index 389707f4a2c17e67efb29174941eba31115fed49..769286a6c2415157195997e77509b40be4d55116 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb index f1b284038d8710310ba28c455f240669d72551de..11db3431f1fe0f662ab1a1d68505f97e7c768be0 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb index 9c8a7edb316b473f7466300eeb2a3590d6ef0f86..21df4831304fd179be5b7874aa2a1f83f618f92b 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb index 116ee4cb8c3a7fcb8298f12702221231c3457dca..3c07bbe6148ecc49ba35e2788c09e9ed7d10dc31 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb index 00a3ce74445a6d11c3b127ca645879889f9e26e2..19d34c3d1a3869cf8c17db553dc21e4a7c8bc9a4 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb index a5fd17b34868f1b6e1ae6e9111dd6cff60b78b42..35e5b4d3bc88cdbafb5d6223c9b63344d7240446 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb index e766a8df7f67d144e4e0a8dd30d7c1e546a86389..ade75969bd51fa1e6a6039caf37957578f519de3 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.7.2" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb index 5abd7ea765d5527ec90d95cb3125d1f1bc27ded6..bbe1c894d7b4aa84facd9222337e531ebc597639 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.7.2" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb index 16ef9ff42ef983114d9b5303a79593061e10e877..b8de1f4777b877e6637eac355f27c7f73a51ef6f 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.8" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..cb11169e9229014039a5b17c66639748b09857b6 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = "1.8.1" + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..dd1343eaa7596f44e5cf116b3a560cd150b61b9f --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = "1.8.1" + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..a67b8a8766a0710b1b4c8c71486ef245f0169364 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.8.1' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.2.144'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..c21425bb3c717135c77ff674e13477b6df7c821e --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = "1.9" + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +dependencies = [('numactl', '2.0.9')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000000000000000000000000000000000..528befdb9af0c1e277656fd08222686850b56194 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.9' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' + diff --git a/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..fdead3abb2b3682fd543c4cda70016f9a6fa2b67 --- /dev/null +++ b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb @@ -0,0 +1,30 @@ +easyblock = 'MakeCp' + +name = 'IMB' +version = '4.0.1' + +homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' +description = """The Intel MPI Benchmarks perform a set of MPI performance measurements for point-to-point and + global communication operations for a range of message sizes""" + +toolchain = {'name': 'goolf', 'version': '1.5.14-no-OFED'} +toolchainopts = {'usempi': True} + +source_urls = ['https://software.intel.com/sites/default/files/managed/34/aa/'] +sources = ['%(name)s_%(version)s.tgz'] + +prebuildopts = "cd src && " +# not built, requires MPI-3 support not present yet in OpenMPI v1.6.x: NBC, RMA +targets = ['MPI1', 'EXT', 'IO'] +buildopts = ["-f make_mpich IMB-%s MPI_HOME=$EBROOTOPENMPI" % t for t in targets] + +parallel = 1 + +files_to_copy = [(['src/IMB-*'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/IMB-%s' % t for t in targets], + 'dirs': [], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..d89a16007748128d763fb46f8518cbfef574a19e --- /dev/null +++ b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb @@ -0,0 +1,30 @@ +easyblock = 'MakeCp' + +name = 'IMB' +version = '4.0.1' + +homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' +description = """The Intel MPI Benchmarks perform a set of MPI performance measurements for point-to-point and + global communication operations for a range of message sizes""" + +toolchain = {'name': 'goolf', 'version': '1.6.10'} +toolchainopts = {'usempi': True} + +source_urls = ['https://software.intel.com/sites/default/files/managed/34/aa/'] +sources = ['%(name)s_%(version)s.tgz'] + +prebuildopts = "cd src && " +# RMA not built, due to missing required MPI-3 support in OpenMPI v1.7.3 +targets = ['MPI1', 'EXT', 'IO', 'NBC'] +buildopts = ["-f make_mpich IMB-%s MPI_HOME=$EBROOTOPENMPI" % t for t in targets] + +parallel = 1 + +files_to_copy = [(['src/IMB-*'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/IMB-%s' % t for t in targets], + 'dirs': [], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5880d9691798e2bf1e15b8eb0d8b42ec1ff1387d --- /dev/null +++ b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'IMB' +version = '4.0.1' + +homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' +description = """The Intel MPI Benchmarks perform a set of MPI performance measurements for point-to-point and + global communication operations for a range of message sizes""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://software.intel.com/sites/default/files/managed/34/aa/'] +sources = ['%(name)s_%(version)s.tgz'] + +prebuildopts = "cd src && " +buildopts = "all" + +parallel = 1 + +files_to_copy = [(['src/IMB-*'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/IMB-EXT', 'bin/IMB-IO', 'bin/IMB-MPI1', 'bin/IMB-NBC', 'bin/IMB-RMA'], + 'dirs': [], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb new file mode 100644 index 0000000000000000000000000000000000000000..2aebd3c1b6e14103d7d31c650df4c1d3274e13a8 --- /dev/null +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "IOR" +version = "2.10.3" +versionsuffix= "-mpiio" + +homepage = 'http://sourceforge.net/projects/ior-sio/' +description = """ The IOR software is used for benchmarking parallel file systems +using POSIX, MPIIO, or HDF5 interfaces. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [('http://sourceforge.net/projects/ior-sio/files/IOR%20latest/IOR-%(version)s/', 'download')] +sources = [SOURCE_TGZ] + +# gmake posix -- IOR with only POSIX interface +# gmake mpiio -- IOR with only POSIX and MPIIO interfaces +# gmake hdf5 -- IOR with POSIX, MPIIO, and HDF5 interfaces +# gmake ncmpi -- IOR with POSIX, MPIIO, and NCMPI interfaces +# gmake all -- IOR with POSIX, MPIIO, HDF5, and NCMPI interfaces +buildopts = ' mpiio' + +files_to_copy = [(['src/C/IOR'], 'bin'), + "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] + +sanity_check_paths = { + 'files': ["bin/IOR"], + 'dirs': ["scripts", "testing"] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb new file mode 100644 index 0000000000000000000000000000000000000000..50f1a0bd7d86b32ff54d47b359de794b1b9235d6 --- /dev/null +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "IOR" +version = "2.10.3" +versionsuffix= "-mpiio" + +homepage = 'http://sourceforge.net/projects/ior-sio/' +description = """ The IOR software is used for benchmarking parallel file systems +using POSIX, MPIIO, or HDF5 interfaces. """ + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [('http://sourceforge.net/projects/ior-sio/files/IOR%20latest/IOR-%(version)s/', 'download')] +sources = [SOURCE_TGZ] + +# gmake posix -- IOR with only POSIX interface +# gmake mpiio -- IOR with only POSIX and MPIIO interfaces +# gmake hdf5 -- IOR with POSIX, MPIIO, and HDF5 interfaces +# gmake ncmpi -- IOR with POSIX, MPIIO, and NCMPI interfaces +# gmake all -- IOR with POSIX, MPIIO, HDF5, and NCMPI interfaces +buildopts = ' mpiio' + +files_to_copy = [(['src/C/IOR'], 'bin'), + "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] + +sanity_check_paths = { + 'files': ["bin/IOR"], + 'dirs': ["scripts", "testing"] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index d3db545e1a6d0ebabeb19837afa3b7fcf19bbee5..cd6c0100f08f2c509b80b82fc15bc10e391e2247 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 51e22a99b8573481a3f815ac182f3ec96908df49..b6c3429f3e9e1ca8455ec55bf8c9b4c75f3d4a15 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index 49c4ff18a2a7c622b30b79b740717235d2239951..6c6330c16bc26fbc8d3752b75f212ddb119f06f9 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index e9de6ee650876c8d6fb97488a28f5b163cf0a530..705db635597d04fed6fbde38b5344eea84c7a670 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 022e6a2f1a59fe416b93b9f3053f550df42f18e6..2bd2eaa62000aa71e4d71fd365fb24780a3c3172 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index 8aef81fc7050b8233b3dd2b6999b59db735dec18..c1d7b2439f9586ed6c8257b0d0cddf92a2adfd74 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index cf247c34ea5d05f6c604892ff4274f8ad74a80c8..27fbe32e7f7c55f88c0bff11ae35e78845f1d041 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index a446d8661a375c5e279abac127a07626e73095a1..a244a5f6bbeaabcee0778766366a4af0cd766c7a 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ed83c45264e9253c0289137d110911f75f3673e --- /dev/null +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb @@ -0,0 +1,47 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Authors: Kenneth Hoste (UGent), Pablo Escobar Lopez (Unibas) + +easyblock = 'MakeCp' + +name = 'IsoInfer' +version = '0.9.1' + +homepage = 'http://www.cs.ucr.edu/~jianxing/IsoInfer.html' +description = """IsoInfer is a C/C++ program to infer isoforms based on short RNA-Seq + (single-end and paired-end) reads, exon-intron boundary and TSS/PAS information. + This version of IsoInfer uses a unified way to handle different types of short reads + with different lengths. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [ + SOURCELOWER_TAR_GZ, # main tarball first, so that start_dir is set correctly + 'graphlib-0.3.tar.gz', +] +source_urls = ['http://www.cs.ucr.edu/~jianxing'] + +dependencies = [ + ('QuadProg++', '1.2.1'), + ('GLPK', '4.53'), + ('GSL', '1.16') +] + +with_configure = True + +# build libgraph.a +graphlib_version = '0.3' +preconfigopts = "cd ../graphlib-%s && ./configure && make && " % graphlib_version +# build isoinfer, make sure we can link to libgraph.a +preconfigopts += "cd ../isoinfer-%(version)s && " +preconfigopts += 'export LDFLAGS="$LDFLAGS -L%%(builddir)s/graphlib-%s/src" && ' % graphlib_version + +files_to_copy = [ + (['src/isoinfer'], 'bin'), +] + +sanity_check_paths = { + 'files': ["bin/isoinfer"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..3f65089c099e3b915fbbf0507c318aff46d4c66f --- /dev/null +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb @@ -0,0 +1,47 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Authors: Kenneth Hoste (UGent), Pablo Escobar Lopez (Unibas) + +easyblock = 'MakeCp' + +name = 'IsoInfer' +version = '0.9.1' + +homepage = 'http://www.cs.ucr.edu/~jianxing/IsoInfer.html' +description = """IsoInfer is a C/C++ program to infer isoforms based on short RNA-Seq + (single-end and paired-end) reads, exon-intron boundary and TSS/PAS information. + This version of IsoInfer uses a unified way to handle different types of short reads + with different lengths. """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +sources = [ + SOURCELOWER_TAR_GZ, # main tarball first, so that start_dir is set correctly + 'graphlib-0.3.tar.gz', +] +source_urls = ['http://www.cs.ucr.edu/~jianxing'] + +dependencies = [ + ('QuadProg++', '1.2.1'), + ('GLPK', '4.53'), + ('GSL', '1.16') +] + +with_configure = True + +# build libgraph.a +graphlib_version = '0.3' +preconfigopts = "cd ../graphlib-%s && ./configure && make && " % graphlib_version +# build isoinfer, make sure we can link to libgraph.a +preconfigopts += "cd ../isoinfer-%(version)s && " +preconfigopts += 'export LDFLAGS="$LDFLAGS -L%%(builddir)s/graphlib-%s/src" && ' % graphlib_version + +files_to_copy = [ + (['src/isoinfer'], 'bin'), +] + +sanity_check_paths = { + 'files': ["bin/isoinfer"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..23b5d632b056950be2a140e46945cd265f8f3c0f --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb @@ -0,0 +1,23 @@ +name = 'icc' +version = '2013.5.192' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.8.3' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..b742c2c7e4483b00d2a57d7b07b5e8e3b9d5f79b --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb @@ -0,0 +1,18 @@ +name = 'icc' +version = '2013_sp1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb new file mode 100644 index 0000000000000000000000000000000000000000..e4c5184bc06b21bbd24e8e0e6adffe77b75431a6 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb @@ -0,0 +1,18 @@ +name = 'icc' +version = '2013_sp1.3.174' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb new file mode 100644 index 0000000000000000000000000000000000000000..f375c6b518c03a1a48d1bb1c5f4ff85007b2df55 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb @@ -0,0 +1,20 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-41-50 +name = 'icc' +version = '2013_sp1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + diff --git a/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..1c9509e4eddf61c8ff69d179a19edaf32013882a --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'icc' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb b/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb new file mode 100644 index 0000000000000000000000000000000000000000..dba6123fdbc2cdba87b15cd91840e812a3d7b1b9 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.0.090.eb @@ -0,0 +1,17 @@ +name = 'icc' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..b54726809800307d62205b10bb84334e340ae16d --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'icc' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb b/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb new file mode 100644 index 0000000000000000000000000000000000000000..08a67483318c06ed33c6b9a1a53646e7a47b7a9b --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb @@ -0,0 +1,17 @@ +name = 'icc' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-11.1.073-32bit.eb b/easybuild/easyconfigs/i/iccifort/iccifort-11.1.073-32bit.eb new file mode 100644 index 0000000000000000000000000000000000000000..bf8e055b76d19acf37e53c30e2b566f749e9ff80 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-11.1.073-32bit.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '11.1.073' +versionsuffix = '-32bit' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-11.1.073.eb b/easybuild/easyconfigs/i/iccifort/iccifort-11.1.073.eb new file mode 100644 index 0000000000000000000000000000000000000000..ae2e0c999b88a15314c651251ec5285466ef3ffd --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-11.1.073.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '11.1.073' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2011.10.319.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2011.10.319.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e07f78603f01991bed8d1e6940b9732d3c811c8 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2011.10.319.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2011.10.319' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2011.13.367.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2011.13.367.eb index fdb9bb58b9530ed7232d2745dd10a1a17bdce3ee..68275b9ecbd1cdf147ee748f279b26f8f8b7dc4f 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2011.13.367.eb @@ -4,13 +4,13 @@ name = 'iccifort' version = '2011.13.367' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' -description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" +description = """Intel C, C++ and Fortran compilers""" toolchain = {'name': 'dummy', 'version': 'dummy'} dependencies = [ - ('icc', version), - ('ifort', version), - ] + ('icc', version), + ('ifort', version), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2011.6.233.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2011.6.233.eb new file mode 100644 index 0000000000000000000000000000000000000000..d022828e36eb2aa51951b573b588e05df83a6c99 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2011.6.233.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2011.6.233' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013.1.117.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013.1.117.eb new file mode 100644 index 0000000000000000000000000000000000000000..10440fb84c5b03c1536633fea3062e927412fc85 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013.1.117.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013.1.117' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013.2.146.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013.2.146.eb new file mode 100644 index 0000000000000000000000000000000000000000..b8feae7a94e1e587cbacd48d86dc51037c131777 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013.2.146.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013.2.146' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013.3.163.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013.3.163.eb new file mode 100644 index 0000000000000000000000000000000000000000..7eae786b863423de5e4c0d6152bfbcc9acd8edd1 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013.3.163.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013.3.163' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013.4.183.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013.4.183.eb new file mode 100644 index 0000000000000000000000000000000000000000..e6454d5f18cabeaf2936ee5074eb8e66b979f924 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013.4.183.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013.4.183' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013.5.192-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..9a152f81feafafb645bd2923792a6affb9926226 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013.5.192-GCC-4.8.3.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013.5.192' +versionsuffix = '-GCC-4.8.3' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013.5.192.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013.5.192.eb new file mode 100644 index 0000000000000000000000000000000000000000..328d4b4e23d33df6f247704476ca93ab9b031522 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013.5.192.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013.5.192' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.0.080.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.0.080.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f2dd9de33e90b889f446ea94bac3d6cc4f46795 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.0.080.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013_sp1.0.080' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.1.106.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.1.106.eb new file mode 100644 index 0000000000000000000000000000000000000000..d1de7554040b59e9f00112956ee2b2520c26d176 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.1.106.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013_sp1.1.106' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..3fa56561859a184fc6afea044ed5d8d1ff09c5d3 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.2.144.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013_sp1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.3.174.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d4f46d67216436e1296ca7c557b10a4b8b9e59c --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.3.174.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013_sp1.3.174' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000000000000000000000000000000000..767174222ae249727ee00f448200c54f3bb3a5ad --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb @@ -0,0 +1,18 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-44-42 +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013_sp1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..f522c0e72008c9fd16477f3969822e3a1e34b823 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.0.090' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090.eb new file mode 100644 index 0000000000000000000000000000000000000000..51b0376b09a253e359ff306ba04eb583664968eb --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..ac14186d634930888167a0b80418b16cea0ead74 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.1.133' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb new file mode 100644 index 0000000000000000000000000000000000000000..cb21cd2b6c13b70b79aebcfb6bd6e46db650ce71 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3-32bit.eb b/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3-32bit.eb index 5701fe1b8687449c3f7897991d9c026e0d94c10f..4337eeffa3061ebe3900ec9a4836d7733fd8d816 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3-32bit.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3-32bit.eb @@ -13,8 +13,8 @@ comp_version = '11.1.073' dependencies = [ ('icc', comp_version, versionsuffix), ('ifort', comp_version, versionsuffix), - ('impi', '4.0.0.028', versionsuffix), - ('imkl', '10.2.6.038', versionsuffix), + ('impi', '4.0.0.028', '', ('iccifort', '%s%s' % (comp_version, versionsuffix))), + ('imkl', '10.2.6.038', '', ('iimpi', '%s%s' % (version, versionsuffix))), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3.eb b/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3.eb index 6f50230cff437762578fcb8cfeafb76d429b9e9f..3a208681ea1a64f85e72ebd7b2f050e0de27b1b3 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-3.2.2.u3.eb @@ -8,11 +8,12 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} +compver = '11.1.073' dependencies = [ - ('icc', '11.1.073'), - ('ifort', '11.1.073'), - ('impi', '4.0.0.028'), - ('imkl', '10.2.6.038'), - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.0.0.028', '', ('iccifort', compver)), + ('imkl', '10.2.6.038', '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-4.0.10.eb b/easybuild/easyconfigs/i/ictce/ictce-4.0.10.eb index 8b81b1836000f14aeb1a7e4c5a0c8195176cb2ae..5a4ca656382e7cb3055efaa12501febfadda7c49 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-4.0.10.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-4.0.10.eb @@ -9,13 +9,11 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2011.10.319' - -## deps for interface build dependencies = [ - ('icc',compver), - ('ifort',compver), - ('impi','4.0.2.003'), - ('imkl','10.3.10.319') - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.0.2.003', '', ('iccifort', compver)), + ('imkl', '10.3.10.319', '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb b/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb index 164e21d3cc07c227ad1a6cae9c685b35da80acd1..72df26b46c7617793222c179184769ae1946eaaa 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb @@ -8,11 +8,12 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} +compver = '2011.6.233' dependencies = [ - ('icc', '2011.6.233'), - ('ifort', '2011.6.233'), - ('impi', '4.0.2.003'), - ('imkl', '10.3.6.233') - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.0.2.003', '', ('iccifort', compver)), + ('imkl', '10.3.6.233', '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-4.1.13.eb b/easybuild/easyconfigs/i/ictce/ictce-4.1.13.eb index a7ae7b5bd7cf4cc091c5c99751eccb7520705151..4ba43cae07a3173901a514590101110bb2991a44 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-4.1.13.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-4.1.13.eb @@ -9,12 +9,11 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2011.13.367' - dependencies = [ - ('icc', compver), - ('ifort', compver), - ('impi', '4.1.0.027'), - ('imkl', '10.3.12.361') - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.027', '', ('iccifort', compver)), + ('imkl', '10.3.12.361', '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-5.1.1.eb b/easybuild/easyconfigs/i/ictce/ictce-5.1.1.eb index 881af4c6681d912ad8e37411027672bb81e9e5e2..64bf93ca4a761acad983f56b9b3f58e2ac4aa204 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-5.1.1.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-5.1.1.eb @@ -9,12 +9,11 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2013.1.117' - dependencies = [ - ('icc', compver), - ('ifort', compver), - ('impi', '4.1.0.027'), - ('imkl', '11.0.1.117') - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.027', '', ('iccifort', compver)), + ('imkl', '11.0.1.117', '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-5.2.0.eb b/easybuild/easyconfigs/i/ictce/ictce-5.2.0.eb index 818b1acd8ae72577774102986ed874db9c7bcfa0..fc33afb1efbf811ccd24f958dee370f7bf65c241 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-5.2.0.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-5.2.0.eb @@ -9,12 +9,11 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2013.2.146' - dependencies = [ - ('icc', compver), - ('ifort', compver), - ('impi', '4.1.0.030'), - ('imkl', '11.0.2.146') - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.030', '', ('iccifort', compver)), + ('imkl', '11.0.2.146', '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-5.3.0.eb b/easybuild/easyconfigs/i/ictce/ictce-5.3.0.eb index f7ac95f291e47b6c62d81698549ad3596f0be1ce..a6b070f713840f0e4536fa3500c732eaaf3850b1 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-5.3.0.eb @@ -10,12 +10,11 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} compsuffix = '.3.163' compver = '2013' + compsuffix - dependencies = [ - ('icc', compver), - ('ifort', compver), - ('impi', '4.1.0.030'), - ('imkl', '11.0' + compsuffix) - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.030', '', ('iccifort', compver)), + ('imkl', '11.0' + compsuffix, '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-5.4.0.eb b/easybuild/easyconfigs/i/ictce/ictce-5.4.0.eb index 651e7f8223c790a34a437ff0afc44e5d21919803..aeb15217ff4ac85605f03e3346145025f26433c4 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-5.4.0.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-5.4.0.eb @@ -12,10 +12,10 @@ compsuffix = '.4.183' compver = '2013' + compsuffix dependencies = [ - ('icc', compver), - ('ifort', compver), - ('impi', '4.1.0.030'), - ('imkl', '11.0' + compsuffix) - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.030', '', ('iccifort', compver)), + ('imkl', '11.0' + compsuffix, '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-5.5.0.eb b/easybuild/easyconfigs/i/ictce/ictce-5.5.0.eb index 81ea22f77147f8562641fe3409bd991e0ad893fd..55b4f558df19ab753f62486e0575e9c251d75abd 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-5.5.0.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-5.5.0.eb @@ -10,12 +10,11 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} compsuffix = '.5.192' compver = '2013' + compsuffix - dependencies = [ - ('icc', compver), - ('ifort', compver), - ('impi', '4.1.1.036'), - ('imkl', '11.0' + compsuffix) - ] + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.1.036', '', ('iccifort', compver)), + ('imkl', '11.0' + compsuffix, '', ('iimpi', version)), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-6.0.5.eb b/easybuild/easyconfigs/i/ictce/ictce-6.0.5.eb index 7fd907fdff6f7c382decf88876c4fa28069403cf..74278fcb5d4fb26186c5ca78b58171bc0b3354f7 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-6.0.5.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-6.0.5.eb @@ -10,12 +10,11 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} suff = '0.080' compver = '2013_sp1.%s' % suff - dependencies = [ ('icc', compver), ('ifort', compver), - ('impi', '4.1.1.036'), - ('imkl', '11.1.%s' % suff), + ('impi', '4.1.1.036', '', ('iccifort', compver)), + ('imkl', '11.1.%s' % suff, '', ('iimpi', version)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-6.1.5.eb b/easybuild/easyconfigs/i/ictce/ictce-6.1.5.eb index 47215eb1bcc7d739e6c3df9c531a75ca71435f5d..e5194b8648c120263826ad4029dd100651d0d60c 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-6.1.5.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-6.1.5.eb @@ -14,8 +14,8 @@ compver = '2013_sp1.%s' % suff dependencies = [ ('icc', compver), ('ifort', compver), - ('impi', '4.1.3.045'), - ('imkl', '11.1.%s' % suff), + ('impi', '4.1.3.045', '', ('iccifort', compver)), + ('imkl', '11.1.%s' % suff, '', ('iimpi', version)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-6.2.5.eb b/easybuild/easyconfigs/i/ictce/ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..41d6ceb53e4a44e910350d3fe70c2474d2bca458 --- /dev/null +++ b/easybuild/easyconfigs/i/ictce/ictce-6.2.5.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'ictce' +version = '6.2.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '2.144' +compver = '2013_sp1.%s' % suff + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.3.049', '', ('iccifort', compver)), + ('imkl', '11.1.%s' % suff, '', ('iimpi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-6.3.5.eb b/easybuild/easyconfigs/i/ictce/ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..adbad5bb8a4dac837796617beff5c3702caf6ad6 --- /dev/null +++ b/easybuild/easyconfigs/i/ictce/ictce-6.3.5.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'ictce' +version = '6.3.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '3.174' # v14.0.3/28 +compver = '2013_sp1.%s' % suff + +dependencies = [ # version/released + ('icc', compver), # 28 Apr 2014 + ('ifort', compver), # 28 Apr 2014 + ('impi', '4.1.3.049', '', ('iccifort', compver)), # 06 Mar 2014 + ('imkl', '11.1.%s' % suff, '', ('iimpi', version)), # 28 Apr 2014 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-7.1.2.eb b/easybuild/easyconfigs/i/ictce/ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..b3dda3d539270dcdccca71c7ba4ed845ad7a3a39 --- /dev/null +++ b/easybuild/easyconfigs/i/ictce/ictce-7.1.2.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'ictce' +version = '7.1.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.090' +compver = '2015.%s' % suff + +dependencies = [ # version/released + ('icc', compver), # Jul 28th 2014 + ('ifort', compver), # Jul 28th 2014 + ('impi', '5.0.1.035', '', ('iccifort', compver)), # Aug 26th 2014 + ('imkl', '11.2.%s' % suff, '', ('iimpi', version)), # Aug 26th 2014 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..cba97b45a2ca9094278809183f3bf838fe62b109 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb @@ -0,0 +1,23 @@ +name = 'ifort' +version = '2013.5.192' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.8.3' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..058b29e416d7420732e068fc6bfb2b6aca0629e8 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb @@ -0,0 +1,18 @@ +name = 'ifort' +version = '2013_sp1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb new file mode 100644 index 0000000000000000000000000000000000000000..6a206056e1a69b3bc6f76c332d225e930a9987ca --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb @@ -0,0 +1,18 @@ +name = 'ifort' +version = '2013_sp1.3.174' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000000000000000000000000000000000..e3dcbcdd250a63992f2df915f8f6ba40c46ec63b --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb @@ -0,0 +1,20 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-44-41 +name = 'ifort' +version = '2013_sp1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..6f1139a94c33e3ceeadb501d842063a6ee29c779 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'ifort' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb new file mode 100644 index 0000000000000000000000000000000000000000..62bde3a68e91f72bcaec8d9f8f998615892bd238 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090.eb @@ -0,0 +1,17 @@ +name = 'ifort' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..b653c4f8582b152d712ff61bb3e36bdd92730358 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'ifort' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb new file mode 100644 index 0000000000000000000000000000000000000000..02137b749816da4ac13ae45a65bc753fa349cac9 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb @@ -0,0 +1,17 @@ +name = 'ifort' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-3.2.2.u3-32bit.eb b/easybuild/easyconfigs/i/iimpi/iimpi-3.2.2.u3-32bit.eb new file mode 100644 index 0000000000000000000000000000000000000000..63d7b9cb9cf7e67bd58aa13521b051aecf7c4254 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-3.2.2.u3-32bit.eb @@ -0,0 +1,19 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '3.2.2.u3' +versionsuffix = '-32bit' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolchain-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_version = '11.1.073' +dependencies = [ + ('icc', comp_version, versionsuffix), + ('ifort', comp_version, versionsuffix), + ('impi', '4.0.0.028', '', ('iccifort', '%s%s' % (comp_version, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-3.2.2.u3.eb b/easybuild/easyconfigs/i/iimpi/iimpi-3.2.2.u3.eb new file mode 100644 index 0000000000000000000000000000000000000000..ec9c41214c1edeea6847f83d096471defb9a60bc --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-3.2.2.u3.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '3.2.2.u3' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolchain-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '11.1.073' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.0.0.028', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-4.0.10.eb b/easybuild/easyconfigs/i/iimpi/iimpi-4.0.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..93e70202c5fdfe7ae57e93005e6a1200fdb6c98b --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-4.0.10.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '4.0.10' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2011.10.319' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.0.2.003', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb b/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffa9bd38436d4745dbdef967a3befcb5553a62f0 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '4.0.6' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolchain-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2011.6.233' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.0.2.003', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-4.1.13.eb b/easybuild/easyconfigs/i/iimpi/iimpi-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..8c51a15a3acfb88efe73815dfa7bdd98ac833d62 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-4.1.13.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '4.1.13' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2011.13.367' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.027', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.1.1.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..122f42dffae13948dcb8563a6156d4364226a7fd --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.1.1.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.1.1' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013.1.117' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.027', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.2.0.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b8ad5ab1f6017c698fc381bb073a5f0be971225c --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.2.0.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.2.0' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013.2.146' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.030', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.3.0.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..99988c915488412ab3707c3b2511d5216d1a8ed7 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.3.0.eb @@ -0,0 +1,19 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.3.0' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compsuffix = '.3.163' +compver = '2013' + compsuffix +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.030', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.4.0.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..2c9f8249abdfa75e5d0f21fc995c9c50a00ef804 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.4.0.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.4.0' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compsuffix = '.4.183' +compver = '2013' + compsuffix + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.0.030', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.5.0.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..40234abc15e924dd0fb03035772d234ea894d8c7 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.5.0.eb @@ -0,0 +1,19 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.5.0' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compsuffix = '.5.192' +compver = '2013' + compsuffix +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.1.036', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.5.3-GCC-4.8.3.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.5.3-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..221f1fb36d24279e55169062b5664abcfa1d6d06 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.5.3-GCC-4.8.3.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.5.3' +versionsuffix = '-GCC-4.8.3' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '5.192' +compver = '2013.%s' % suff + +dependencies = [ # version/released + ('icc', compver, versionsuffix), # 28 Apr 2014 + ('ifort', compver, versionsuffix), # 28 Apr 2014 + ('impi', '4.1.3.049', '', ('iccifort', '%s%s' % (compver, versionsuffix))), # 06 Mar 2014 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-6.0.5.eb b/easybuild/easyconfigs/i/iimpi/iimpi-6.0.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..d18090195988033cc9ddcfbe68d01583fd343d72 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-6.0.5.eb @@ -0,0 +1,19 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '6.0.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.080' +compver = '2013_sp1.%s' % suff +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.1.036', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-6.1.5.eb b/easybuild/easyconfigs/i/iimpi/iimpi-6.1.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a74885eeb794556ba067e5966433990b9f404a8 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-6.1.5.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '6.1.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.106' +compver = '2013_sp1.%s' % suff + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.3.045', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-6.2.5.eb b/easybuild/easyconfigs/i/iimpi/iimpi-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..11b8d527f02056b29dbf14ace6f3a20a73fb2746 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-6.2.5.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '6.2.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '2.144' +compver = '2013_sp1.%s' % suff + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.3.049', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-6.3.5.eb b/easybuild/easyconfigs/i/iimpi/iimpi-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..de33f6058d159c7f2de4c968efc1dc1a3ef0ee7e --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-6.3.5.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '6.3.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '3.174' # v14.0.3/28 +compver = '2013_sp1.%s' % suff + +dependencies = [ # version/released + ('icc', compver), # 28 Apr 2014 + ('ifort', compver), # 28 Apr 2014 + ('impi', '4.1.3.049', '', ('iccifort', compver)), # 06 Mar 2014 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d5fa44768d0a923bbba03f481232261743d4ea1d --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.1.2' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.090' +compver = '2015.%s' % suff + +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '5.0.1.035', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d62bc1e82f01fd184e814c2693ccb54e140a1254 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.1.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.0.090' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '5.0.1.035', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..e5ac3571c5e1d9ec04c0b9eea23ad1256dfab0ea --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.2.3' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb index 38d406d02b4d5f85353aafd9dac9b78ef65cc523..c435db372c7eb6cac8ad010d85611b9736f90c2b 100644 --- a/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'imake' version = '1.0.5' diff --git a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb index 17ce1fd0606685b236f21c6b39ada3972fd8c1f2..7f14fd72e4124117c034f5ed2736f26d5f3ad190 100644 --- a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'imake' version = '1.0.5' diff --git a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb index 2a9e2558db05482746d151c06e412113629c8015..5148175660b2c3d867160ab37dc0daf06811084e 100644 --- a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'imake' version = '1.0.5' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-iimpi-3.2.2.u3-32bit.eb b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-iimpi-3.2.2.u3-32bit.eb new file mode 100644 index 0000000000000000000000000000000000000000..3a80f2c16b7df77125e0bba8e149153dfd5b404c --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-iimpi-3.2.2.u3-32bit.eb @@ -0,0 +1,24 @@ +name = 'imkl' +version = '10.2.6.038' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '3.2.2.u3-32bit'} + +sources = ['l_mkl_p_%(version)s.tar.gz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +m32 = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-iimpi-3.2.2.u3.eb b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-iimpi-3.2.2.u3.eb new file mode 100644 index 0000000000000000000000000000000000000000..509fac85138b10821f0a599083ee7ed41feb5646 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-iimpi-3.2.2.u3.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '10.2.6.038' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '3.2.2.u3'} + +sources = ['l_mkl_p_%(version)s.tar.gz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319-iimpi-4.0.10.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319-iimpi-4.0.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..35d0ddb71de1728120faf97e1f4281b3ac6caeec --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319-iimpi-4.0.10.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '10.3.10.319' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '4.0.10'} + +sources = ['l_mkl_%(version)s_intel64.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-iimpi-4.1.13.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-iimpi-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..57dc8b459d463f303af439bcc89ea12de99959f7 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-iimpi-4.1.13.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '10.3.12.361' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '4.1.13'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-iompi-4.6.13.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-iompi-4.6.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..b4b2c7f99e4bc11bf85a37c620c0123a846fdf5b --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-iompi-4.6.13.eb @@ -0,0 +1,21 @@ +name = 'imkl' +version = '10.3.12.361' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '4.6.13'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233-iimpi-4.0.6.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233-iimpi-4.0.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..dca1a570534aab65b2be3ac31fd6817c68e30e9e --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233-iimpi-4.0.6.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '10.3.6.233' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '4.0.6'} + +sources = ['l_mkl_%(version)s_intel64.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117-iimpi-5.1.1.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117-iimpi-5.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..58d4fb2e2cf18971c83bb6f65f8853b67abb9261 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117-iimpi-5.1.1.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.0.1.117' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.1.1'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146-iimpi-5.2.0.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146-iimpi-5.2.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1e7124884bf18064e218b2e73422ab2f763caf3 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146-iimpi-5.2.0.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.0.2.146' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.2.0'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163-iimpi-5.3.0.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163-iimpi-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..74e9065d7ceb9ee34a9266cb843210515b4d7af6 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163-iimpi-5.3.0.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.0.3.163' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.3.0'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183-iimpi-5.4.0.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183-iimpi-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..471f7e9aa6330517fd062b3442eb6a021cdc7b65 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183-iimpi-5.4.0.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.0.4.183' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.4.0'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0d09ac1d4b2b422956853c09280ddb4c1b62d09d --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.0.5.192' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.5.0'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080-iimpi-6.0.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080-iimpi-6.0.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..184303d5c00f8d38ed62f1c04d13893309e35b2a --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080-iimpi-6.0.5.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.1.0.080' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '6.0.5'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106-iimpi-6.1.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106-iimpi-6.1.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..e37a375b7a49e07166b205d543acff55e383412e --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106-iimpi-6.1.5.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.1.1.106' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '6.1.5'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..716cd4b3dded05f3b681cb161d69e4289b4f64b8 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb @@ -0,0 +1,33 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_mkl_%(version)s.tgz'] + +compver = '2013.5.192' +gccsuff = '-GCC-4.8.3' +versionsuffix = '-%s%s' % (compver, gccsuff) + +# deps for interface build +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '4.1.3.049', gccsuff), +] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..d1128e779927c19929a355da72ec7daf894a1dc3 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb @@ -0,0 +1,32 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_mkl_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.8.3' +versionsuffix = '-%s-%s' % (gcc, gccver) + +# deps for interface build +dependencies = [ + (gcc, gccver), + ('impi', '4.1.3.049', versionsuffix), +] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..7c293cda0abd7751a7fb4af5ef646884a0d64b9a --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb @@ -0,0 +1,35 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_mkl_%(version)s.tgz'] + +compver = '2013_sp1.2.144' +comp = ('iccifort', compver) + +# deps for interface build +mpi = 'OpenMPI' +mpiver = '1.6.5' +versionsuffix = '-%s-%s' % (mpi, mpiver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + (mpi, mpiver, '', comp), +] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-gimpi-1.5.9.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-gimpi-1.5.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..d7fe18f674f09432c9567d67681853f4540c6ffc --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-gimpi-1.5.9.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'gimpi', 'version': '1.5.9'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iimpi-5.5.3-GCC-4.8.3.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iimpi-5.5.3-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..2114374474a42fad3e1dc311dc92ad9a15fb6207 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iimpi-5.5.3-GCC-4.8.3.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.5.3-GCC-4.8.3'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iimpi-6.2.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iimpi-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..8854a895987182eb6dc77f0968c617ec1ad2ec6c --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iimpi-6.2.5.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '6.2.5'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb new file mode 100644 index 0000000000000000000000000000000000000000..2559891bccbeeb27624d5e7245613725bcaf95b1 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb @@ -0,0 +1,21 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '2015.01'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-6.6.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-6.6.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b2fad1cab6643d925cc01f4194552a52661a479 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-6.6.2.eb @@ -0,0 +1,21 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '6.6.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..03e70ed442f9e0a1156f3b1efa826b377b2915cc --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb @@ -0,0 +1,30 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_mkl_%(version)s.tgz'] + +# deps for interface build +compver = '2013_sp1.2.144' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.3.049') +] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..ca1c5d3c2847856ca8be6f4b0f347824922ba311 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.1.3.174' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '6.3.5'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb new file mode 100644 index 0000000000000000000000000000000000000000..3f03a3bd36f01702d5463dee76c423f14469ece5 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb @@ -0,0 +1,30 @@ +name = 'imkl' +version = '11.1.3.174' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_mkl_%(version)s.tgz'] + +# deps for interface build +compver = '2013_sp1.3.174' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '4.1.3.049') +] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..c7ad8e1fbd6686dae36f62536b027b1f3f934ae7 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb @@ -0,0 +1,23 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_23-29-25 +name = 'imkl' +version = '11.1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '6.6.4'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..dcb2085bf3f7e6dd45ebcd6112a89716d3389d38 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.0.090' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.1.2-GCC-4.9.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ce046efac053e7b4eb37c6dfa51e8ac4dbe12c7 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.0.090' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.1.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..a249ac518b9ae34d9e004487b8acc768b943e75d --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.1.133' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.2.3-GCC-4.9.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..a44565b87fc364da49b420300f5d42f4b198186b --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = "11.2.1.133" + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" +toolchain = {'name': 'ipsmpi', 'version': '2014.12'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb new file mode 100644 index 0000000000000000000000000000000000000000..b47595dda38e162a04f89f035f056f9992f5d8c3 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb @@ -0,0 +1,21 @@ +name = 'impi' +version = '4.0.0.028' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '11.1.073-32bit'} + +sources = ['l_mpi_pu_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +m32 = True + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb new file mode 100644 index 0000000000000000000000000000000000000000..7b8162cea322e5d94b3feac97600730a25261f37 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.0.0.028' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '11.1.073'} + +sources = ['l_mpi_pu_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb new file mode 100644 index 0000000000000000000000000000000000000000..153ba081b1751e1f8c0933f5c08738e0578d438a --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb @@ -0,0 +1,21 @@ +name = 'impi' +version = '4.0.2.003' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2011.10.319'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +patches = ['impi_4.x_productsdb.patch'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb new file mode 100644 index 0000000000000000000000000000000000000000..da8581e61f9000a1ee742148e4d41d37cbe5a591 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb @@ -0,0 +1,21 @@ +name = 'impi' +version = '4.0.2.003' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2011.6.233'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +patches = ['impi_4.x_productsdb.patch'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb new file mode 100644 index 0000000000000000000000000000000000000000..16a82416aab9857bdc2dc0f29ebacedd43356d4b --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.0.027' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2011.13.367'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb new file mode 100644 index 0000000000000000000000000000000000000000..d81cc168ff3554aba673893fe9957b6a92bd133c --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.0.027' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.1.117'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb new file mode 100644 index 0000000000000000000000000000000000000000..0f49c7d2123c2599795f996b9086d2fde11df9dd --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.0.030' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.2.146'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb new file mode 100644 index 0000000000000000000000000000000000000000..178d95d4156fb61ff11c55b80b848279f7ea692f --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.0.030' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.3.163'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb new file mode 100644 index 0000000000000000000000000000000000000000..16d697d7065a7534932717c7593764123af326f9 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.0.030' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.4.183'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb new file mode 100644 index 0000000000000000000000000000000000000000..1440a8a1b0edaa335ea932c742a6a4262bf6d57d --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.1.036' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.5.192'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb new file mode 100644 index 0000000000000000000000000000000000000000..f3bb7b6e5edac1d3691d6a9609c942afa15d39e2 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.1.036' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.0.080'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb new file mode 100644 index 0000000000000000000000000000000000000000..1b64e97c4604c0119f1ffaa9945042657d8d165c --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.3.045' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.1.106'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..478cc2645d4795671fb5354ce94815681cb5e92c --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.3.049' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..ddba0fe1d651350e7318b888f9e4cdde7b726ba4 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.3.049' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.5.192-GCC-4.8.3'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..5732c5fbd3ca426c51f3aff3afdcf1fd24e084f7 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.3.049' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.2.144'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb new file mode 100644 index 0000000000000000000000000000000000000000..b9d7d5e20bf4d4a8ae487f735282c5de6511dfae --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.3.049' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.3.174'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb new file mode 100644 index 0000000000000000000000000000000000000000..e55725a62a895cd1821b4a0254b6579865ca1838 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.3.049' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f63a18d7bab1b0d7a3281c7b0827ccf85d314dc --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.1.035' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.0.090-GCC-4.9.2'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb new file mode 100644 index 0000000000000000000000000000000000000000..43da00f4ab81f655bbf0a17b4ad5f379e96f8b8d --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.1.035' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.0.090'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..64a9011ae4a33b76f3abe88ce5074a64e160096f --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.2.044' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3297e8dea09165c14f6698d6219d142ec5e0fe47 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb index 155c39ec0493187e381d137f1791b534ac6e5a13..1e1be175b1ca661d8c30acd4896a8a0520ccde15 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb index 65764f964b9b5a2ae9989c97a9eb5dff873b7e07..75a9c42cf7dbf238bfec04445049cf31312d6732 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb index 554430022b3fc542f26f4ddc7ab234ee3ffe79c6..804a25ce18b2749c7c2cecbfd4818fa3998c42bb 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e307d5deb42a98db29f4a8ab594137d2f41d8642 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb b/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..071bb1cdbbc69ada362a71de4e46bca58b3056e8 --- /dev/null +++ b/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb @@ -0,0 +1,28 @@ +easyblock = "Toolchain" + +name = 'intel-para' +version = '2014.12' + + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, ParaStation MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +mpilib = 'psmpi' +mpiver = '5.1.0-1' + + +dependencies = [ + ('icc', compver), + ('ifort', compver), + (mpilib, mpiver, '', ('iccifort', compver)), + ('imkl', '11.2.1.133', '', ('ipsmpi', version)), +] + + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/intel/intel-2014.10.eb b/easybuild/easyconfigs/i/intel/intel-2014.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..d89452f540baac252349b1ad730f7ddfb561ee64 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2014.10.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2014.10' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.090' +compver = '2015.%s' % suff + +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.1.035', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.0.090', '', ('iimpi', '7.1.2%s' % gccsuff)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/intel/intel-2014.11.eb b/easybuild/easyconfigs/i/intel/intel-2014.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..1bdbdfe846f2f8f02f5fd53ed0e65c319d326b54 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2014.11.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2014.11' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.1.133', '', ('iimpi', '7.2.3%s' % gccsuff)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/intel/intel-2014b.eb b/easybuild/easyconfigs/i/intel/intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9d433db3c415c4c7e5f727af2fdb557095055d2d --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2014b' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '5.192' +compver = '2013.%s' % suff + +gccsuff = '-GCC-4.8.3' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '4.1.3.049', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.1.2.144', '', ('iimpi', '5.5.3%s' % gccsuff)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/intel/intel-2015a.eb b/easybuild/easyconfigs/i/intel/intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2cb7f99ce4e56b7d0f2ecbbed94ae5c9579c3132 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2015a' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.1.133' +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.1.133', '', ('iimpi', '7.2.3%s' % gccsuff)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb b/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa85e82a98aca36f1f88167d7fe6405ec3cc0a68 --- /dev/null +++ b/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iomkl' +version = '2015.01' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.1.133-GCC-4.9.2' + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.8.4', '', ('iccifort', compver)), + ('imkl', '11.1.2.144', '', ('iompi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-4.6.13.eb b/easybuild/easyconfigs/i/iomkl/iomkl-4.6.13.eb index 12a1f95a2eb1f2076dd9cc05e21c5db99a7f757d..8d862d5f49f8ca07b7ab2e40e6fa8dd3f60c79fb 100644 --- a/easybuild/easyconfigs/i/iomkl/iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/i/iomkl/iomkl-4.6.13.eb @@ -17,7 +17,7 @@ dependencies = [ ('icc', compver), ('ifort', compver), (ompi, ompiver, '', comp), - ('imkl', '10.3.12.361', '-%s-%s' % (ompi, ompiver)), + ('imkl', '10.3.12.361', '', ('iompi', version)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-6.6.2.eb b/easybuild/easyconfigs/i/iomkl/iomkl-6.6.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ec7dab9731c2b71e40c6d7d5b0f815aa3255260 --- /dev/null +++ b/easybuild/easyconfigs/i/iomkl/iomkl-6.6.2.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'iomkl' +version = '6.6.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013_sp1.2.144' +comp = ('iccifort', compver) +ompi = 'OpenMPI' +ompiver = '1.6.5' + +dependencies = [ + ('icc', compver), + ('ifort', compver), + (ompi, ompiver, '', comp), + ('imkl', '11.1.2.144', '', ('iompi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb new file mode 100644 index 0000000000000000000000000000000000000000..6392c4027f4719c8f2a5a4b2d5ee861dbd16e3da --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iompi' +version = '2015.01' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.1.133-GCC-4.9.2' + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.8.4', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/iompi/iompi-4.6.13.eb b/easybuild/easyconfigs/i/iompi/iompi-4.6.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..fbdec64f25f5e0faa7c9854e9e00bb9736a425f9 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-4.6.13.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iompi' +version = '4.6.13' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2011.13.367' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.6.3', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.2.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..173c527c98a00e568a25d57c07679d2f17f82d82 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.2.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iompi' +version = '6.6.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013_sp1.2.144' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.6.5', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..091224afc0d8a6d35538bf8112cf2351d6ccc296 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb @@ -0,0 +1,23 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-27_12-00-26 +easyblock = "Toolchain" + +name = 'iompi' +version = '6.6.4' +versionsuffix = '-no-OFED' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013_sp1.4.211' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.6.5', versionsuffix, comp), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..8dccca825e5820df9f580374a15a3520eb1e7f42 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb @@ -0,0 +1,22 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_21-36-35 +easyblock = "Toolchain" + +name = 'iompi' +version = '6.6.4' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013_sp1.4.211' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.6.5', '', comp), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/ipp/ipp-8.1.0.144.eb b/easybuild/easyconfigs/i/ipp/ipp-8.1.0.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..dce7087021f3d539ce584a89d43eae36544d9e69 --- /dev/null +++ b/easybuild/easyconfigs/i/ipp/ipp-8.1.0.144.eb @@ -0,0 +1,20 @@ +name = 'ipp' +version = '8.1.0.144' + +homepage = 'http://software.intel.com/en-us/articles/intel-ipp/' +description = """Intel Integrated Performance Primitives (Intel IPP) is an extensive library + of multicore-ready, highly optimized software functions for multimedia, data processing, + and communications applications. Intel IPP offers thousands of optimized functions + covering frequently used fundamental algorithms.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ipp_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb b/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..4a33e11b3a0cab0b4513204c967976c4a2b80e8d --- /dev/null +++ b/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb @@ -0,0 +1,27 @@ +easyblock = "Toolchain" + +name = 'ipsmpi' +version = '2014.12' + + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL combined with ParaStation MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +mpilib = 'psmpi' +mpiver = '5.1.0-1' + + +dependencies = [ + ('iccifort', compver), + ('icc', compver), + ('ifort', compver), + (mpilib, mpiver, '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb b/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f9a44b8c20215b44e09a24f5c7d5313391da265 --- /dev/null +++ b/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb @@ -0,0 +1,26 @@ +easyblock = 'Tarball' + +name = 'ispc' +version = '1.6.0' + +homepage = 'http://ispc.github.io/ , https://github.com/ispc/ispc/' +description = """Intel SPMD Program Compilers; An open-source compiler for high-performance + SIMD programming on the CPU. ispc is a compiler for a variant of the C programming language, + with extensions for 'single program, multiple data' (SPMD) programming. + Under the SPMD model, the programmer writes a program that generally appears + to be a regular serial program, though the execution model is actually that + a number of program instances execute in parallel on the hardware.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['ispc-v%(version)s-linux.tar.gz'] +source_urls = [('http://sourceforge.net/projects/ispcmirror/files/v%(version)s', 'download')] + +sanity_check_paths = { + 'files': ["ispc"], + 'dirs': [] +} + +modextrapaths = {'PATH': ''} + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/itac/itac-8.1.4.045.eb b/easybuild/easyconfigs/i/itac/itac-8.1.4.045.eb new file mode 100644 index 0000000000000000000000000000000000000000..67482320a65ab8125afca21a81bdbfed76456163 --- /dev/null +++ b/easybuild/easyconfigs/i/itac/itac-8.1.4.045.eb @@ -0,0 +1,21 @@ +name = 'itac' +version = '8.1.4.045' + +homepage = 'http://software.intel.com/en-us/intel-trace-analyzer/' +description = """The Intel Trace Collector is a low-overhead tracing library that performs + event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application + activities gathered by the Intel Trace Collector through graphical displays. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_itac_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +preferredmpi = 'impi4' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0fdf4369d997e32351d4995530249abc529fdd0 --- /dev/null +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'JAGS' +version = '3.4.0' + +homepage = 'http://mcmc-jags.sourceforge.net/' +description = """JAGS is Just Another Gibbs Sampler. It is a program for analysis + of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [('http://sourceforge.net/projects/mcmc-jags/files/JAGS/%(version_major)s.x/Source/', 'download')] +sources = [SOURCE_TAR_GZ] + +configopts = ' --with-blas="-lopenblas" --with-lapack="-llapack" ' + +sanity_check_paths = { + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.so"], + 'dirs': [] +} + +modextrapaths = { + 'JAGS_INCLUDE': 'include/JAGS', + 'JAGS_LIB': 'lib', +} + +moduleclass = 'math' + diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..9b984fa0fd1b1a1dcc2cf5e717aa663035ea8379 --- /dev/null +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'JAGS' +version = '3.4.0' + +homepage = 'http://mcmc-jags.sourceforge.net/' +description = """JAGS is Just Another Gibbs Sampler. It is a program for analysis + of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +source_urls = [('http://sourceforge.net/projects/mcmc-jags/files/JAGS/%(version_major)s.x/Source/', 'download')] +sources = [SOURCE_TAR_GZ] + +configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' + +sanity_check_paths = { + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.so"], + 'dirs': [] +} + +modextrapaths = { + 'JAGS_INCLUDE': 'include/JAGS', + 'JAGS_LIB': 'lib', +} + +moduleclass = 'math' + diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a19a5f06c5a0269ab40104e8fcaa55dfbc94662a --- /dev/null +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'JAGS' +version = '3.4.0' + +homepage = 'http://mcmc-jags.sourceforge.net/' +description = """JAGS is Just Another Gibbs Sampler. It is a program for analysis + of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation """ + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [('http://sourceforge.net/projects/mcmc-jags/files/JAGS/%(version_major)s.x/Source/', 'download')] +sources = [SOURCE_TAR_GZ] + +configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' + +sanity_check_paths = { + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.so"], + 'dirs': [] +} + +modextrapaths = { + 'JAGS_INCLUDE': 'include/JAGS', + 'JAGS_LIB': 'lib', +} + +moduleclass = 'math' + diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb new file mode 100644 index 0000000000000000000000000000000000000000..64746de0537ecb89d6e3405a8f50edf64f74c2a3 --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb @@ -0,0 +1,25 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.11' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s.jar'] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] + +java = 'Java' +javaver = '1.7.0_60' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb b/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb index 5bc100cb870999baa7b6de9821e1e1fe1e911601..d889b3d0b2cfe510b836ecf74b145984749e0bad 100644 --- a/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Jansson' version = "2.5" diff --git a/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb b/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..0803b327c8a29a3e70bd02f80eab3d6037a97aa0 --- /dev/null +++ b/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'Jansson' +version = "2.6" + +homepage = 'http://www.digip.org/jansson/' +description = """Jansson is a C library for encoding, decoding and manipulating JSON data. + Its main features and design principles are: + * Simple and intuitive API and data model + * Comprehensive documentation + * No dependencies on other libraries + * Full Unicode support (UTF-8) + * Extensive test suite""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +# fi. https://github.com/akheron/jansson/archive/2.5.zip +source_urls = ['https://github.com/akheron/jansson/archive/'] +sources = ['%(version)s.tar.gz'] + +preconfigopts = 'autoreconf -i && ' + +sanity_check_paths = { + 'files': ['lib/libjansson.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +runtest = 'check' + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb index 8936c49f7b3760def609b48d234addba9bb94593..0c8eec58bed73b2cb06a9749d527a72bbbc3b170 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' @@ -12,8 +14,8 @@ sources = [SOURCELOWER_ZIP] source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"] - } + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb index 2c331ec80fed2ac412b661f028b14ab3563d09f5..af3ac8dc98129a1e41bf2c765e2237b56a0c3baf 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' @@ -10,8 +12,8 @@ sources = [SOURCELOWER_ZIP] source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"] - } + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..e398d414f130934f827046cc1f3801dc86df059e --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb index 2a9c066f57947c313b114021da9858660dd2fb86..33aaa71fc222371917a335e43397fb73a185bcbd 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' @@ -11,8 +13,8 @@ sources = [SOURCELOWER_ZIP] source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"] - } + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb index 1c14c19383eed1861d2169aede2bd37256167ed7..c12081b201ac32351bd3d734b2666db938b258bd 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' @@ -12,8 +14,8 @@ sources = [SOURCELOWER_ZIP] source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"] - } + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb index 2bbc6e083e8e3234abbf08f67b937a078ffb1680..0ed1064ed8a00054394d91e7ab061fce877f69fc 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' @@ -5,7 +7,6 @@ homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' description = """The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'pic': True} @@ -13,8 +14,8 @@ sources = [SOURCELOWER_ZIP] source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"] - } + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..fe272775671282e46073817c9c4892d3a2603af3 --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d148f3dede00d5df0d3b2feb4e33e7a3b59f5aef --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..dfa13f7e3698e9186f5733d7a7c33747e7a14aa9 --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb index 778a35918bc07419261f22f05cf3944dc150127e..7623c8332585506f96e487d945e4236e8da9f3aa 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' @@ -11,8 +13,8 @@ sources = [SOURCELOWER_ZIP] source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"] - } + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/Java/Java-1.7.0_60.eb b/easybuild/easyconfigs/j/Java/Java-1.7.0_60.eb new file mode 100644 index 0000000000000000000000000000000000000000..d635702f022be668511e0e5839634b2d7118e116 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.7.0_60.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.7.0_60' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_20.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_20.eb new file mode 100644 index 0000000000000000000000000000000000000000..74de18d58ca83a19034a22763feb5a7967ff0e5d --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_20.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_20' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb new file mode 100644 index 0000000000000000000000000000000000000000..b2b319db51caa1934d1c3f082d67cd5c7a207c6b --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_25' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb new file mode 100644 index 0000000000000000000000000000000000000000..0ab768fe8959b2045ec71e665a61f44186e0c8cd --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_31' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..595bb566df9266eb5e928cd0dd4ddb07d4ca7954 --- /dev/null +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb @@ -0,0 +1,28 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'Jellyfish' +version = '2.1.3' + +homepage = 'http://www.genome.umd.edu/jellyfish.html' +description = """ Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['ftp://ftp.genome.umd.edu/pub/jellyfish/'] +sources = [SOURCELOWER_TAR_GZ] + +parallel = 1 + +runtest = "check" + +sanity_check_paths = { + 'files': ['bin/jellyfish'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9315d81b5a2e47d426503496ddc88cafd7d49900 --- /dev/null +++ b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'Kerberos_V5' +version = '1.12.2' + +homepage = 'http://web.mit.edu/kerberos/dist/index.html' +description = """Kerberos is a network authentication protocol. + It is designed to provide strong authentication for client/server + applications by using secret-key cryptography. + A free implementation of this protocol is available from the + Massachusetts Institute of Technology.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['krb5-%(version)s-signed.tar'] +source_urls = ['http://web.mit.edu/kerberos/dist/krb5/%(version_major_minor)s/'] + +builddependencies = [('Bison', '3.0.2')] + +prebuildopts = "cd krb5-%(version)s/src && " +preinstallopts = prebuildopts +preconfigopts = "tar xvf krb5-%(version)s.tar.gz && " + prebuildopts + +sanity_check_paths = { + 'files': ['bin/krb5-config', 'bin/gss-client', 'bin/kadmin', + 'sbin/kdb5_util', 'sbin/gss-server', 'sbin/kadmind', + 'lib/libkrb5.so', 'lib/libgssapi_krb5.so', 'lib/libkadm5clnt.so', + 'lib/libkadm5srv.so', 'lib/libkdb5.so', 'lib/libk5crypto.so', + ], + 'dirs': ['lib/krb5'] +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7482053f6fbc7c8dc9feff3ce3991b03353d2fb2 --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb index 65b4c068d15b0bfb2a9c69ecf058091bd37d6457..e54e5f74c9e153b886de8c7ea6c5337bab14ee22 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb index 5ad8638fca36e95a1efde43a6faf44a239b931e8..3790a57f153907bf8b8db691991fad9941bf0df0 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb index 598911385efda4080b7627adef010846e629cbef..664996727e1b7fa8466ecd087f0e09c0f1f0b09d 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..31cb837d0f63198bf32e19f04b5ed2fce9f5bcb6 --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich2-1.4.8.eb b/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich-1.4.8.eb similarity index 89% rename from easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich2-1.4.8.eb rename to easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich-1.4.8.eb index b8517be37b4cd53f1697b450aa4b7d5fbb091134..ea4670125d9747721cdc1b535bae51dd87a04d36 100644 --- a/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich-1.4.8.eb @@ -6,7 +6,7 @@ description = """LAPACK is written in Fortran90 and provides routines for solvin simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TGZ] diff --git a/easybuild/easyconfigs/l/LIBSVM/LIBSVM-3.17-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LIBSVM/LIBSVM-3.17-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..e6d416a63ebdaa64134b4ca422596c56f3cd5ce9 --- /dev/null +++ b/easybuild/easyconfigs/l/LIBSVM/LIBSVM-3.17-ictce-4.1.13.eb @@ -0,0 +1,27 @@ +easyblock = 'MakeCp' + +name = 'LIBSVM' +version = '3.17' + +homepage = 'http://www.csie.ntu.edu.tw/~cjlin/libsvm/' +description = """LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression + (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = [homepage] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Qt', '4.8.4')] + +buildopts = ' && cd svm-toy/qt && make MOC=$EBROOTQT/bin/moc ' +buildopts += 'CFLAGS="$CFLAGS -I$EBROOTQT/include -I$EBROOTQT/include/QtGui -lQtGui -lQtCore" && cd -' + +files_to_copy = [(['svm-*'], 'bin'), 'tools'] + +sanity_check_paths = { + 'files': ['bin/svm-%s' % x for x in ['predict', 'scale', 'toy', 'train']], + 'dirs': ['tools'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 712a33b529742ba90c028415ec54960a4af446ba..01b0d95ad8f754c6941bbe4405748e3bfcaad3d1 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 9b41c952940786b7ffdf94d00a9305e14191ac7b..4244d4fadb4a68e79bb0c397734a6c253c226d93 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb index 6c72f81316841d1db5b9e6b16111cd2b5beabdc9..115d1188ad4fef8b3801d19cfc2ede260a2291b2 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb index 8c69a0337340346577f2f8235df32e0cbbb2e76a..266ce97e2594b5250d65392e23b855937d53e2af 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index d0b990acfb97d58475d924e2167808d047570b35..d1e8d56383e4ec42535975179f32cd5050132d56 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 1a0ed065bb5926a3e5bb5d5bffc790a72dd25941..64a60f0f66d7221ec2b49108734ab36a4c768f00 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index 1c408bae7f591ca70ef58640c18c880fca8e8aa0..ea5c5f104f12cf1a2a79bc4425a1821bdaef604d 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index b7013b9187e008d9e15e8c28adb1ee1b87404f1a..8607639444b148c951e5ee12e469b830155c7cf0 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a1c8f2c16c5e76359cad57a97c4f2dcde1fb19bd --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +version = '4.0.3' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +sources = ['tiff-%(version)s.tar.gz'] + +toolchain = {'name': 'intel', 'version': '2014b'} + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb index 9d92c7b151977875e40469bf2133b70f50d544b5..2c0f30db6f2ffeb1bd29599452e66d6b379ba345 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb @@ -6,17 +6,18 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'gmacml', 'version': '1.7.0'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb index 17407ad7b5728d97039f93044105b83ed88b02e2..03c9b2dc7a7b076ebb51e9005a4fa43c5953a7b2 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb @@ -6,17 +6,18 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb index 2771e5e1cc4827fe123325b3178f9b281595f5ee..730a15d185cecbc1d6bf034318679ddf15b8ebf7 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb @@ -5,17 +5,18 @@ homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb index 19243bd56db8f731f867c4a6363136119657f644..f3c3b23d4adb62c1e3a4c3ddd3c1f5976654331b 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb @@ -1,22 +1,23 @@ name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb index df7ae209001d2b2057b2ab38c03b9ff94b682000..4e57ea250063a2c3db802b1e7cf413fddac53f2d 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb @@ -1,23 +1,23 @@ name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'ictce', 'version': '4.1.13'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb index 8cc0275ce4cd1028a41c12ab58374a8de22cdafc..785e595968d71797d4aa007af6ac2af4c9e4bffe 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb @@ -1,23 +1,23 @@ name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb index da01cdde8f7e29e678514d81420eb97afb0399e9..401ec7cb9e47739b5a9c4bfb5c8ddbb617f4de9e 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb @@ -1,23 +1,23 @@ name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'ictce', 'version': '5.5.0'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-shared --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e84c9a7220ec3db189163a600de0e656b4dbd379 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2cf26e1b10bdc05493e6407c1a399996d2445506 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb similarity index 82% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-goolf-1.4.10.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb index 6216ca78da8d7b00d44ba3453ab8f5928ef982b6..b40eb92779bbe418ae47411d8ee23b6f0308fb4b 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb @@ -1,7 +1,7 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb similarity index 82% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-4.1.13.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb index d3406da67ec653755195984958d1138e16f7f5c8..50b72b92d12483589c15f88e3debc669e7c66252 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb @@ -1,7 +1,7 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb similarity index 67% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-5.5.0.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb index 4a5fc5c6ce92dfc3e377288ab69401a06740602c..dc184e8319cea220a187a4724a54376915894105 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb @@ -1,7 +1,7 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" @@ -11,9 +11,4 @@ toolchainopts = {'pic': True} sources = ['libint-%(version)s-stable.tgz'] source_urls = ['http://downloads.sourceforge.net/project/libint/libint-for-mpqc'] -sanity_check_paths = { - 'files': ['lib/libint2.a', 'lib/libint2.so', 'include/libint2/libint2.h'], - 'dirs': [], -} - moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..78dc1f64e8f9379582f1a4ef43cb542159b99a17 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb @@ -0,0 +1,14 @@ +name = 'Libint' +version = '2.0.3' + +homepage = 'https://sourceforge.net/p/libint' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = ['libint-%(version)s-stable.tgz'] +source_urls = ['http://downloads.sourceforge.net/project/libint/libint-for-mpqc'] + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb index 769d7938908a68cd7ecbc50e28ca907ff6b6c38a..dafa99bf9ca6539323420acdbbe504b95fa07e8b 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2" @@ -15,7 +17,7 @@ source_urls = ['http://sourceforge.net/projects/lmod/files/'] dependencies = [("Lua", "5.1.4-5")] sanity_check_paths = { - 'files': ["lmod/%(version)s/init/profile"], + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], 'dirs': [] } diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb index 78f3f1e26beabab177949445d4979143d1586c2e..3f6adb2e4be576207e4d9e1da80a95e76829339a 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2" @@ -15,7 +17,7 @@ source_urls = ['http://sourceforge.net/projects/lmod/files/'] dependencies = [("Lua", "5.1.4-5")] sanity_check_paths = { - 'files': ["lmod/%(version)s/init/profile"], + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], 'dirs': [] } diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb index f386c53edb283aa329f516379046d452f09bef01..fc1ccc2e0589191c2f98d3a2f99243631beec326 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2" @@ -15,7 +17,7 @@ source_urls = ['http://sourceforge.net/projects/lmod/files/'] dependencies = [("Lua", "5.1.4-5")] sanity_check_paths = { - 'files': ["lmod/%(version)s/init/profile"], + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], 'dirs': [] } diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb index 14c2d00848810a20c8ff697e0cfc9c561b6342f9..79641dbdef90a56f1999fa2ea98dcbb31e1b2aa4 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2.5" @@ -10,12 +12,15 @@ description = """Lmod is a Lua based module system. Modules allow for dynamic mo toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCE_TAR_BZ2] -source_urls = ['http://sourceforge.net/projects/lmod/files/', 'http://sourceforge.net/projects/lmod/files/Testing'] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] dependencies = [("Lua", "5.1.4-8")] sanity_check_paths = { - 'files': ["lmod/%(version)s/init/profile"], + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], 'dirs': [] } diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..e6fc678e23f1f909d46af405ba0aa3175c5260c7 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.3" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..9844fbdfdca53bc0d23009487e2226a51243b42e --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.4" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..52c285e604b7a3fcf1342bbcc590a5c87a35b660 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.4.2" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..c4a121585550e40312a86a204203fae7767d9b63 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.5" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3dc166bd16fedfe9100064471374c0365ecd3e58 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.5.1" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..87217debc9dadcb31aae2cf96f5da09274429e9a --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.6" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..04d26d64f78433f162ac93fa4ddb72fd279c60f2 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.7" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..adb13e8e6551357aeddcca5f9341a7545e6ef27c --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.8" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..abac83ac8ac77c6b7c7d068507b086bd37089d0a --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.8.5" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..e86305d642f4aacbdb425b961ac6c8e25515253d --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.9" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..e44bacb20bd3d88807d667f5f6848c1fc1135766 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.9" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst new file mode 100644 index 0000000000000000000000000000000000000000..3c0886718fc10059dd1cd7b66b46d1cd4223a336 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -0,0 +1,41 @@ +Summary +======= + +This directory contains (hopefully) sufficient gear in order to let you +bootstrap towards the Lmod implementation of environment modules. + +Howto +===== + +Assuming you have successfully used the bootstrap procedure of EasyBuild, +you should be able to initiate a recursive build of the following bits:: + + EASYBUILD_OPTARCH= time eb Lmod-5.9-GCC-4.8.4.eb -r + +which is going to build the following modules/easyconfigs:: + + g/GCC/GCC-4.8.4.eb ## if this breaks use: --try-amend=parallel=1 + n/ncurses/ncurses-5.9-GCC-4.8.4.eb ## On MacOSX, this should pick a special patch + l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb ## Lmod is written in Lua, which needs ncurses + l/Lmod/Lmod-5.9-GCC-4.8.4.eb ## Lmod should be built with -r, to build the above + +This operation is expected to be the needed substrate to launch you towards Lmod; +Lmod facility gets activated with the `sourceme` script available next to this file:: + + source sourceme ## N.B. direct assignments on environment variables are intentional here + +Then try:: + + ml av ## ie. the Lmod equivalent to `module avail` ; it should just work + +If so, now you implemented the better instance of environment modules implementations: + https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html + +Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ +You should now be able to try alternative Lmod/Lua versions, toggle the cache, and so forth. + +enjoy, +Fotis + +2014-10-26 + diff --git a/easybuild/easyconfigs/l/Lmod/sourceme b/easybuild/easyconfigs/l/Lmod/sourceme new file mode 100644 index 0000000000000000000000000000000000000000..804f0ede35485f5ee2f66638824d741b370669aa --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/sourceme @@ -0,0 +1,28 @@ +## Contributed by Fotis Georgatos , as means to help others wishing to ride on Lmod +# +# This script helps to implement policy: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html +# +# prereq: Lmod/5.9.5-GCC-4.8.4 +# prereq: Lua/5.1.4-8-GCC-4.8.4 +# +# build prereqs, take a note: GCC/4.8.4 & ncurses/5.9 + +## Remember to change the following, as per individual case +EASYBUILD_PREFIX=${EASYBUILD_PREFIX:-"$HOME/.local/easybuild"} + +TOOLCHAIN="GCC-4.8.4" +VERSIONLUA="5.1.4-8" +VERSIONLMOD="5.9" + +PREFIXLUA=$EASYBUILD_PREFIX/software/Lua/$VERSIONLUA-$TOOLCHAIN +PREFIXLMOD=$EASYBUILD_PREFIX/software/Lmod/$VERSIONLMOD-$TOOLCHAIN/lmod/$VERSIONLMOD + +export PATH=$PREFIXLUA/bin:$PREFIXLUA/libexec:$PATH +export LMOD_MPATH_AVAIL=yes # `module avail` now also searches the pathnames of modulefiles +source $PREFIXLMOD/init/profile + +export PAGER=cat # Keep it simple, for a start +unset LMOD_IGNORE_CACHE # Lmod cache should be working now +export LMOD_COLORIZE=YES # YMMV + +echo 'Now, try fi. `module avail -d compiler` or `ml av` and observe output' diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb index 6089259852f4cdfc053d72c4706f8a046a605e2f..42d88db94d46a154269783ddc4c71f982a158483 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-5" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb index 88109be8ee27f3f8609c27b65dd99ca1d95df195..31389a407863a1519e8ecde92d4ac165fb845956 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-5" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb index e8d1e81e0c4842502943d9bb7ef4851974f2aca5..c87b16fa928468578d4e98548b799fbd7ef29f0a 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-5" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb index 2d4f7773d7357059bc5300ce60b6baeab01aac62..85d67ef440e949ff0a0fd52eadc137036490232f 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-8" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..a84e128f024fb4a5552eb76f18bda712082bf2e8 --- /dev/null +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = "Lua" +version = "5.1.4-8" + +homepage = "http://www.lua.org/" +description = """Lua is a powerful, fast, lightweight, embeddable scripting language. + Lua combines simple procedural syntax with powerful data description constructs based + on associative arrays and extensible semantics. Lua is dynamically typed, + runs by interpreting bytecode for a register-based virtual machine, + and has automatic memory management with incremental garbage collection, + making it ideal for configuration, scripting, and rapid prototyping.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = ['lua-%s.tar.gz' % version.replace('-', '.')] +source_urls = ['http://sourceforge.net/projects/lmod/files/'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/lua"], + 'dirs': [] +} + +moduleclass = "lang" diff --git a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ee23b3ce7ad31227473644204a71e6fb917ebad --- /dev/null +++ b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +## + +easyblock = 'ConfigureMake' + +name = 'less' +version = '458' + +homepage = 'http://www.greenwoodsoftware.com/less/' +description = """Less is a free, open-source file pager. It can be found on most versions of Linux, + Unix and Mac OS, as well as on many other operating systems.""" + +source_urls = ['http://www.greenwoodsoftware.com/less/'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['bin/less'], + 'dirs': [], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index e6749bed35211e469ecca23072eb1aa982cac044..36b7df3cbbbfa1e5659c2b02b80195cbd77c3d45 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'lftp' version = '4.4.1' diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index c08a41608746d71492091bbcc51b2e70cf402aac..9d1f79e19b05d2611b7ec05f73f4869f827c8503 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'lftp' version = '4.4.1' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb index b9be2efae2350b017f9b65369544da8bd885b27b..e1317b6a068d5a7d4881024fc0c9ecac35b331bb 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb index 7c9daa8b70b28c7e6ab4154bf57b8ccd5c1a2889..a224ca2f47bbf8b98502d087b2e00b659be3149d 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb index 50c2ca78b726b12816af339187573aba1db1e506..84dfd42c65de33f08ed5aa160c6b6443a92a7841 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d296c6ae8cb5f908c920013f904fba246d58eac8 --- /dev/null +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libICE' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Inter-Client Exchange library for freedesktop.org""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('xtrans', '1.3.4'), +] + +builddependencies = [ + ('xproto', '7.0.26'), +] + + +sanity_check_paths = { + 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs' : [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb index 16060206da591d3640fd50c4cac5611f96787361..aa6111e5a0718ca96a1d47028b23c6bf236b3c57 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb index 87bf8853117b68ca4e6689300a71faaad906c783..14074eae88feec15f0c0215d24bd47045e6096db 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb index d00cbdc986ccdea1ad6f2baf18e54c87dff169a7..ee47bc867f3c8eb5a2d1fa28bf640603a0602e4f 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8182108112cee23c2ae5bfc0e334c939b66ad825 --- /dev/null +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libSM' +version = '1.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 Session Management library, which allows for applications to both manage sessions, + and make use of session managers to save and restore their state for later use.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('libICE', '1.0.8'), +] +builddependencies = [ + ('xproto', '7.0.26'), + ('xtrans', '1.3.4'), +] + +sanity_check_paths = { + 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs' : [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb index cd12d86ab232f997a5816662ac1dcefad9d1164b..520bd74e88bf64c372bad405f73b3717ce4dc429 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb index eb5f4b8d2404188530b492e94b9ef3f06d7a2586..693be4e80907f1b05908777f8821c90805ce69ff 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb index 583a481c18ff4b770db80cca9cbb9f233a1e0d16..0e6ea38eed897d61bc3403952abf528980fad74f 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..893f0011c60909bfa8ead8684422b4ccf5cb7120 --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.2.1'), + ('xcb-proto', '1.7', pythonversion), + ('kbproto', '1.0.6'), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), +] + +dependencies = [ + ('libxcb', '1.8', pythonversion), + ('xtrans', '1.3.4'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..2f11de33483964c14e4a0f1287258a86c0965701 --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.10', versionsuffix), + ('kbproto', '1.0.6'), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), +] + +dependencies = [ + ('libxcb', '1.10', versionsuffix), + ('xtrans', '1.2.6'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..491d7b754b38a597c70a5246bd00bdae495e294b --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.2' +versionsuffix = '-Python-2.7.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.10', versionsuffix), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), + ('kbproto', '1.0.6'), +] + +dependencies = [ + ('libxcb', '1.10', versionsuffix), + ('xtrans', '1.3.4'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..26a7c1bcad481d2485123a5899dcd0d51f3e7b9d --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('xproto', '7.0.26'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb index 7ce23e22cfc051bc35ad87708093b7dc2bcc54ac..1cbc16e8bbedd82a071f983c86248a78211de0c0 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb index a284b7f633f3ed99e9b2d4fb4bcbf2d26c847a5e..aa72c34e220a493a372528b2a97cce0dae9e5d55 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb index 7ed70c847ebe299099b1a1fd25fdaf2478eb5e8c..61b3a03f5e6b606424c10ae74efff628d4d3b791 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..de6588743754866b920e33e1520fd285f1f1c950 --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('xproto', '7.0.26'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb index 5ffb68801190e0f6939af79686e75fbfae96fbeb..0afe4224f62594cfdec81c2dd8a005c8f3ae3e92 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXaw' version = '1.0.12' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb index b762b2fc1104765db7fd05f0494123d5fb3ccccd..dbbc5cbafd704f941994bfbf3a00ff29f464ea0d 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXaw' version = '1.0.12' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb index 8cda879d73538fa338dfb6e73e26a74bb59fc2de..ab991baeb12777a32be65fbf0ae6e07fa4fa6a24 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXaw' version = '1.0.12' diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a15cb924db694aad5db4845a8d283fb7b0b0d219 --- /dev/null +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXdmcp' +version = '1.1.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is +useful for allowing clients to interact with the X Display Manager. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.26'), +] +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..2ed55c95cd52ea153b6e654a2a77d48739448f26 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), +] +dependencies = [ + ('xproto','7.0.26'), + ('libX11', '1.6.2', versionsuffix), + ('xextproto', '7.3.0'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb index 5dc078bfb74be3811c9304abc1b40dbca24ef32d..4a8d61c2665b6d1c722e76524f00832847d27dd3 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb index d4bdc634f35ac30e7259225b65c238b41bb47039..638857be648ec6115e505f38a324b3ed9125e985 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb index 7cc48ce5f8674250cf0872dfc293c22ae0f29289..c45e32b915b9378754d5048c2ac24ea954b9cd57 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..4dd886a4bf04af97f8d91858786c645be62d5b0a --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), + ('xproto','7.0.26'), + ('xextproto', '7.3.0'), +] +dependencies = [ + ('libX11', '1.6.2', versionsuffix), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8ff72de9ba57e171f53f1ed993c948f5f0bba37c --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('libX11', '1.6.1'), + ('libXdmcp', '1.1.1'), +] + +builddependencies = [ + ('xproto','7.0.26'), + ('xextproto', '7.2.1'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb index 5010d2aa95ca29880f91a397176337c8352fc382..4f783695b31421045c09129c577d854c84b2ba1d 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXfixes' version = '5.0.1' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb index 20bf7b171708216b39c7493da037c2ff908c96e0..9fb8e9f3f9d9ad498ae9e3a8a34fde57efa8f4dd 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXfixes' version = '5.0.1' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb index 87f1ef0d391f8a2892ac48e64578c7387266cec9..adfb7e8af0c3b165a4b22c95561ae0da05446f10 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXfixes' version = '5.0.1' diff --git a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7ec93515f11dfbcdfad4d45a40fbe80b571b954e --- /dev/null +++ b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'libXft' +version = '2.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('kbproto', '1.0.6'), + ('renderproto', '0.11'), +] + +dependencies = [ + ('libX11', '1.6.2', '-Python-2.7.8'), + ('libXrender', '0.9.8'), + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), +] + +sanity_check_paths = { + 'files': ['lib/libXft.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..506f6626af8b8e7b47f7cfe257080b0b5288edf3 --- /dev/null +++ b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'libXft' +version = '2.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('kbproto', '1.0.6'), + ('renderproto', '0.11'), +] + +dependencies = [ + ('libX11', '1.6.2', '-Python-2.7.8'), + ('libXrender', '0.9.8'), + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), +] + +sanity_check_paths = { + 'files': ['lib/libXft.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb index 0c7011e540ac0e92fef19956373665a383e64ada..989ca225d4c2ed489c806054ca10671e093aff32 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXi' version = '1.7.2' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb index 7eca8cceb1a2460adc915bc3acc0ecc43e93e480..f1233c793cc0480af2b8237ae9cb48504a8a304e 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXi' version = '1.7.2' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb index a0201585d729b89e0ada0c1beb03124e3165df27..1fc075646238f712f34a5568569f4ba375cc0920 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXi' version = '1.7.2' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a4be0e47a6aca0f166f040198e32f75eeb4b5b2b --- /dev/null +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libXinerama' +version = '1.1.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Xinerama multiple monitor library""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), + ('xineramaproto', '1.2.1'), + ('xextproto', '7.3.0'), +] +dependencies = [ + ('xproto','7.0.26'), + ('libX11', '1.6.2', pythonversion ), + ('libXext', '1.3.2', pythonversion), +] + +sanity_check_paths = { + 'files': ['lib/libXinerama.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2b1ca0f1abeca91bfbaba8c310d6c26752f14dc6 --- /dev/null +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libXinerama' +version = '1.1.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Xinerama multiple monitor library""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), + ('xineramaproto', '1.2.1'), + ('xextproto', '7.3.0'), +] +dependencies = [ + ('xproto','7.0.26'), + ('libX11', '1.6.2', pythonversion ), + ('libXext', '1.3.2', pythonversion), +] + +sanity_check_paths = { + 'files': ['lib/libXinerama.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb index fbf39423f6e8ee93042d183f951628911adaed61..8db3290cf386fb1b6b66d4f76590bf14db251719 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXmu' version = '1.1.2' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb index 75249d51b96ac859672b1eced1866a3f4c11d723..5ab7c61a441e5916f149617e91ee7d348ed850fa 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXmu' version = '1.1.2' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb index 80f4b6f0660edafa0c0eed10c9e1a24bc4b06d74..df5f4eeafacdd1fc621cef9b92f6120c80b6e926 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXmu' version = '1.1.2' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb index 2f8d991632c4c978ce8592333131d4b2a64ac3a7..b54fb5d0e063b595394dd995a00d860170dad62b 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXp' version = '1.0.2' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb index 65798889cea292e055a5eb47fb6d6cc21ff4f01a..aafb0c89662f0a37c287e48344b45086d39c722d 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXp' version = '1.0.2' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb index 406fdd8a088e55adb8759d00994a7285734046f5..2adf08884bc5110891b78a3345bc6214709959ef 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXp' version = '1.0.2' diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb index 9f8a24e64117de65a7fcef0c6e8df30f2f467e89..0840f6e06d458849b62d2c4d777bea8da9fea9b0 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXpm' version = '3.5.11' diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb index d0a5514f82b320b6ae748284cc06014f86f33405..076cc39edb1d049bd20c31c3005f9bd56e695186 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXpm' version = '3.5.11' diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb index dcea15ec39e8db2247298d7fccb32337fdfb02ff..5bb46ff15c9319db7f7ce76f6241df41b30b2080 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXpm' version = '3.5.11' diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..778cd1670cc7f85fc419bb7b4c592dd8c77df7b9 --- /dev/null +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libXrender' +version = '0.9.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('renderproto', '0.11'), +] + +dependencies = [ + ('kbproto', '1.0.6'), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +sanity_check_paths = { + 'files': ['lib/libXrender.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..fe8ecdca33913919ab4509674cd319a77c345d67 --- /dev/null +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libXrender' +version = '0.9.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('renderproto', '0.11'), +] + +dependencies = [ + ('kbproto', '1.0.6'), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +sanity_check_paths = { + 'files': ['lib/libXrender.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb index df76b64d5ef05ef26a04bbaf3467bee835db2739..0a3d6df938d58c146e2af5072712e1647ad97682 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb index b713972597bccafaa8e0fc53411988c72b462179..0419ecbed294a040af05fc75e833a8012a1e5e39 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb index 0a3a7d28570cdf9f20f87d091f8d8381c19fc4cc..978dd4006b61d796d528fd51b8d68536238144c7 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f903c018725dc61eaaa3d4700809914e277f9d21 --- /dev/null +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'libXt' +version = '1.1.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are + based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('libSM', '1.2.1'), + ('libICE', '1.0.8'), + ('libX11', '1.6.1'), +] + +builddependencies = [ + ('xproto', '7.0.26'), + ('kbproto', '1.0.6'), +] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in [ + 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', + 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', + 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', + 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', + 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', + ] + ], + 'dirs' : [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..0a754ead09b0687ddc568833da828715cf5d9f75 --- /dev/null +++ b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +# With <3 for EasyBuild +# +# EasyConfig for libcircle: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Petar Forai +# ---------------------------------------------------------------------------- + +easyblock = 'ConfigureMake' + +name = 'libcircle' +version = '0.2.0-rc.1' + +homepage = 'https://github.com/hpc/libcircle/' +description = """An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing +embarrassingly parallel workloads using self-stabilization.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True, 'pic': True} + +sources = ['%(version)s.tar.gz'] +source_urls = ['https://github.com/hpc/libcircle/archive/'] + +sanity_check_paths = { + 'files': ['include/libcircle.h', 'lib/libcircle.a', 'lib/libcircle.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b03276694bb0ac6fa0dbd651d87c88804a40e0cc --- /dev/null +++ b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb @@ -0,0 +1,30 @@ +# With <3 for EasyBuild +# +# EasyConfig for libcircle: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Petar Forai +# ---------------------------------------------------------------------------- + +easyblock = 'ConfigureMake' + +name = 'libcircle' +version = '0.2.0-rc.1' + +homepage = 'https://github.com/hpc/libcircle/' +description = """An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing +embarrassingly parallel workloads using self-stabilization.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'usempi': True, 'pic': True} + +sources = ['%(version)s.tar.gz'] +source_urls = ['https://github.com/hpc/libcircle/archive/'] + +sanity_check_paths = { + 'files': ['include/libcircle.h', 'lib/libcircle.a', 'lib/libcircle.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb index 4793aadab2c0688967860b713fe8ee6b27d5c8db..c9f79a726b7928e6d3c0a30a3f8cc7f4f0db21fc 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb index c6329bbafe42442bda8893c64a56803b5124e004..e765208e8d31bbf53fbccb161fc7747da2f3cfd9 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb index f9f2863718f24500cbd6fab1b76a7639d5be2f24..cd7968e31d0574a922d3df1f00df9327aff3148e 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb index ff25be499bf8093be375ac1d360ebb168c509f9d..d73a51293468555a9e2bae5c79ad4e1f56fba2ad 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb index f94fb7136d4c5db84141ebb56757357e56fd508b..5c7544aa886565d6bddc483ec9b298f0c9d3d37c 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb index c8502e8a6a7a4e650b3d03f5d3b73eccaebfb4be..e4bdd39b89b3646f56abb8f025f9ab13c562273e 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb index eeb07a71219d34791dd32df76395665ccecc5f84..d970534cf1e3634213d3618c372fb7dd806a0622 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..844b065646118c65d0b76bac85e99acb51f43482 --- /dev/null +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libdrm' +version = '2.4.27' + +homepage = 'http://dri.freedesktop.org' +description = """Direct Rendering Manager runtime library.""" + +source_urls = ['http://dri.freedesktop.org/libdrm/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +dependencies = [ + ('libpthread-stubs', '0.3'), + ('libpciaccess', '0.13.1'), +] + +configopts = '--enable-nouveau-experimental-api' + +sanity_check_paths = { + 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', + 'lib/libdrm_radeon.so', 'lib/libdrm_nouveau.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'dirs': ['include/libdrm', 'include/libkms', 'include/nouveau', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb index b8d0724ab7ef87a6a631e348449a9019975f8f27..e1a66cadcc78dfe033d7dc1306c956cfe210b85d 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1e464e3679f82084064caf74058c68052b56aa01 --- /dev/null +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libdrm' +version = '2.4.27' + +homepage = 'http://dri.freedesktop.org' +description = """Direct Rendering Manager runtime library.""" + +source_urls = ['http://dri.freedesktop.org/libdrm/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +dependencies = [ + ('libpthread-stubs', '0.3'), + ('libpciaccess', '0.13.1'), +] + +configopts = '--enable-nouveau-experimental-api' + +sanity_check_paths = { + 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', + 'lib/libdrm_radeon.so', 'lib/libdrm_nouveau.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'dirs': ['include/libdrm', 'include/libkms', 'include/nouveau', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..c4e1b21a2a84822782defa64c40b0aabb6678868 --- /dev/null +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb @@ -0,0 +1,35 @@ +easyblock = 'MakeCp' + +name = 'libdwarf' +version = '20140805' + +homepage = 'http://www.prevanders.net/dwarf.html' +description = """The DWARF Debugging Information Format is of interest to programmers working on compilers +and debuggers (and anyone interested in reading or writing DWARF information))""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.prevanders.net'] + +dependencies = [('libelf', '0.8.13')] + +with_configure = True +preconfigopts = 'CFLAGS="-fPIC $CFLAGS" ' +configopts = "--enable-shared " + +# This is dirty but libdwarf cannot find it's own library in the build process... +prebuildopts = ' LD_LIBRARY_PATH="../libdwarf:$LD_LIBRARY_PATH" ' + +files_to_copy = [ + (["dwarfdump2/dwarfdump"], "bin"), + (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), + (["libdwarf/libdwarf.h", "libdwarf/dwarf.h"], "include"), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ["bin", "lib", "include"] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0033e4acfb0604108c2f2ce7f77130e60a3af1e --- /dev/null +++ b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libelf' +version = '0.8.13' + +homepage = 'http://www.mr511.de/software/english.html' +description = """libelf is a free ELF object file access library""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.mr511.de/software/'] + +sanity_check_paths = { + 'files': ['lib/libelf.a', 'lib/libelf.so', 'lib/libelf.so.0', 'include/libelf.h'], + 'dirs': ['lib/pkgconfig'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..682b29be825a48403090f9b39dd47bd48f05c041 --- /dev/null +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb @@ -0,0 +1,16 @@ +easyblock = 'ConfigureMake' + +name = 'libevent' +version = '2.0.21' + +homepage = 'http://libevent.org/' +description = """The libevent API provides a mechanism to execute a callback function when a specific + event occurs on a file descriptor or after a timeout has been reached. + Furthermore, libevent also support callbacks due to signals or regular timeouts.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://github.com/downloads/libevent/libevent/'] +sources = ['%(name)s-%(version)s-stable.tar.gz'] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb index 0c3d74c035f23dc1f134a056962cf830b52236a2..11a54b8c7c34d3d3092ff6b3f1e498cd2fe492b6 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb index 8ea7a2f64ca233fef8e7ae26b45d70c36412c8e6..c6052a9f0053426aa8eb2b336d4d6d5087439ab2 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb index f4504554c319da2b662562c61d1c23fdeb6b608b..31080ed707f093274262e20a92af0e30c5de3c8a 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb index fd11c9cdc094313d3f1bde1fd8a88dc357e23302..6daa2b6eeaf20acdc2e5e002d1306742204e37be 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb index c6b9fc165b930ab824afcb093536244ab2d274bc..b473d6a98fbfa50cd6eb3ab9620350e0ab048f22 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb index d9a287357f3dd217e68d99ba4029098c895ca858..8b17c8f332f085d5ccbffe6a60180ed1e4cdc006 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb index d739b39a04fd61b9b6926d70d23c851120de3f9b..792dc25227e85a5cb440c2e9e00a152af78ce413 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb index 613a185859a37b2119eacf154ffd061bde42339d..ce63e78de62c16cda29cff73dd542d531a86320f 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..9244693aa3895daee576a1b8a1abd0af8bd61c8c --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.0.13' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib64/libffi.%s' % SHLIB_EXT, 'lib64/libffi.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb index 8f8f4182b767cfe2f29d27e89e0ec693133b2828..01613ab7e58d360c86e85562b64bfafd274f9c8b 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb index 8feab385c49fb09cb88b717530d7b338804463a0..95d503458575858340db433090a941f583e6d483 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb index 402c182ac9fa00c73347971ea68721f384190515..6a631aa3d4e06600c9c353db8b9af0d001b7ba93 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb index d19893fd6b895e033d72db7dd614a6658eb98d2e..6b6b7b31c33e8a1195a2b6aca483791b12287ff8 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..f44b4109bf3994043713c0c8db25d428a96788f5 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..61d0b9f762fad125b053aa465078665e55c117e2 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..96f55c01f8d2a90030397e95348969104cf1054e --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..610b070a4fc1d50a4c55067f2259a0c9f5963b4c --- /dev/null +++ b/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libgd' +version = '2.1.0' + +homepage = 'http://libgd.bitbucket.org/' +description = "GD is an open source code library for the dynamic creation of images by programmers." + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['https://bitbucket.org/libgd/gd-libgd/downloads'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('fontconfig', '2.11.1'), + ('libjpeg-turbo', '1.3.1'), + ('libpng', '1.6.10'), + ('zlib', '1.2.7'), +] + +sanity_check_paths = { + 'files': ["lib/libgd.a", "lib/libgd.so"], + 'dirs': ["bin", "include"], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 7f66ee67250502926e71bc3f0843c26df1f1d4d4..b7b2e2fbc538bae7c735decb7a5a0385368a8298 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index 4431992a8c5004e7270b702ecd6b84f1dc1e1246..4dccc15fd5e321fc5341752be38750e168dc050f 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index 20ea7b21253c5ac89671c1708f19215c8b642d4d..0ac17949f1e06e594c65a1f7696d9ac5396a0214 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index 008b9428d87135c4b81f86e0eec76d7fa6f41387..dc2903782e64c4fbf85fa66c16e6477575e858a3 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb index d6279e4a8d198e3e476b15beada6946650a2ed5a..ede4708977f066544ad9202a2c7e36bf152b6afd 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb index 54b6e7c9b0a4351fbcfa296a5546f1e39bd7be38..26e45a4b96e3bfe5a0d9a132651b07c56af0a934 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb index 53f400eb0adb3785c1666b014106098a0833e52c..29d1902d63ed19298098b829dcfd653b3d109efc 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb index 2181ebf0c7d850e16043389eae7894d3a8d27b67..6978598f1703a82f531bdf7d2feff34f3f5bd824 100644 --- a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibmad' version = '1.3.9' @@ -11,14 +13,12 @@ toolchain = {'name': 'GCC', 'version': '4.6.3'} sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] -dependencies = [ - ('libibumad', '1.3.8'), - ] +dependencies = [('libibumad', '1.3.8')] sanity_check_paths = { - 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', - 'lib/libibmad.a', 'lib/libibmad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', + 'lib/libibmad.a', 'lib/libibmad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb index 108bae19bc8aeaab4cf22540fcd4ed0d124c77b9..355a23ab84b135f35ed45965f0dad78073adab3e 100644 --- a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibmad' version = '1.3.9' @@ -11,14 +13,12 @@ toolchain = {'name': 'GCC', 'version': '4.7.2'} sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] -dependencies = [ - ('libibumad', '1.3.8'), - ] +dependencies = [('libibumad', '1.3.8')] sanity_check_paths = { - 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', - 'lib/libibmad.a', 'lib/libibmad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', + 'lib/libibmad.a', 'lib/libibmad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb index 7a774cf33fd3a363cb5335931bafe244d13c5fbf..235f332fbf54ed039ac4085f48576427e808356a 100644 --- a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibumad' version = '1.3.8' @@ -10,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] sanity_check_paths = { - 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb index 7145aed692440b2c42a847990ebe55bbe476db76..7519907ee4bcdc49ece0a5ab591b47c5a2ef6c1b 100644 --- a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibumad' version = '1.3.8' @@ -10,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] sanity_check_paths = { - 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb index 604404ff18a3354a373763c7f90187f5e6789fc5..4f69234828004e674a3e2271ef16882a000b98a8 100644 --- a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibverbs' version = '1.1.4' @@ -11,8 +13,8 @@ sources = ['%s-%s-1.24.gb89d4d7.tar.gz' % (name, version)] source_urls = [homepage] sanity_check_paths = { - 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % shared_lib_ext], - 'dirs': ['bin', 'include/infiniband'] - } + 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include/infiniband'], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb index 753ef259441e4a7dd3049a90a127cc35641a50ac..a84a3a6a0a8124dfa75386517bc48e6270921ed5 100644 --- a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibverbs' version = '1.1.4' @@ -11,8 +13,8 @@ sources = ['%s-%s-1.24.gb89d4d7.tar.gz' % (name, version)] source_urls = [homepage] sanity_check_paths = { - 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % shared_lib_ext], - 'dirs': ['bin', 'include/infiniband'] - } + 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include/infiniband'], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb index 0d0a354c13769a2f5117041da418b6c6fb249a70..3f9b81c869fe25a84b17dc143a86253e290065c0 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.27' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb index ce8871841a485c5835d0ad8d744cc879f6d92a41..21cc8fb526fd83ae7c458424191c841a77e62af8 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.27' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb index cc1ae261870469d707fb48193609d8334edf041c..0dd7cf48bbe5348bf6bbdec1a1e3c98b07ea9c79 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.27' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..666949d901a05964bee699e15c662a052b0e4fbc --- /dev/null +++ b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libidn' +version = '1.29' + +homepage = 'http://www.gnu.org/software/libidn' +description = """GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications. +Libidn's purpose is to encode and decode internationalized domain names.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb index 60866e8337594ac970a18c62ae18f4d3f38a417e..7289b72f8d74df00faade96ff20eddea694f3ad2 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.0' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..97496de156c0140d8501071c84e011574304a0da --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.3.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.07'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f611dfc78de7304d975b18520f3d5db147a10ffd --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.3.1' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.07'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..ecec75e2301e62ab83a2271a728134b27f86650b --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.3.1' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses + SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a + library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.05'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..f987aae4d5e8dbf3acbd86cb1a0f908554836a0f --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.3.1' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses + SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a + library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.05'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..70fac12c9e17f65a112db217b12ad3e6b6683c2e --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.3.1' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.05'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..57eea7cba0e29b79f3f0990099af6574f2e1bf70 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..6af6464ee63d3801bef90d025cf0fa5653741d79 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..639a4e904bb5291c687d66e20453ca94ac1619eb --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb index 2ad36b3352907bb01393c7fd1431e76aadc2fbe7..f753b8b744e405d9f1dfc615b7409ac450b2b0a3 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb index 872932fd489ca69e6e3d036524e5b8eef93851b9..f514350317d8a3396e0a98ab0739848978f39ad9 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb index fe87afca3e080d8593a445ad013dec5069f65711..a8ede070974aaaff7fcf2d7b399dd3bca92d9d46 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb index f0147955d46beed95bbd459bb669970d15adff29..9c911d9a3d98b8f8b0518c2dd0550aca8cc9d609 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb old mode 100755 new mode 100644 index 354853cbffb05fe623d4600ffcb00107bcdc22a7..6ac9b7d5c3de3333b3efa4a1e6726f967d608b83 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb index 0be9a759df9c055a2dcfb48758e90ceae7e94f15..a021127537b826548d71320914b00d825ffb4e44 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb index 66801ecc40f5b16d6b6ffffd45fba6ea6b2014ac..11090d4b7a795f4bbba096076fd4be56bb88f3b0 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb index 98be12dbeefa7c04ca29cc0da70676e259f15ed1..f66aff6454aa0fdea7f45ee0d7dc803b40153dad 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..f03e2b9b6023073fe14bd15b50427f193fb428bb --- /dev/null +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpciaccess' +version = '0.13.1' + +homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' +description = """Generic PCI access library.""" + +source_urls = ['http://cgit.freedesktop.org/xorg/lib/libpciaccess/snapshot'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +builddependencies = [ + ('Autoconf', '2.69'), + ('xorg-macros', '1.17'), +] + +preconfigopts = "ACLOCAL='aclocal -I $EBROOTXORGMINMACROS/share/aclocal' ./autogen.sh && " + +sanity_check_paths = { + 'files': ['include/pciaccess.h', 'lib/libpciaccess.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb index 07f21c7dfb7357c8801626bf18ffc014bd416d78..33c34a406a067a1c3fff444753e8f1c30e35f248 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..7e3d115240e3b7d820bb882469644c1c147046e1 --- /dev/null +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpciaccess' +version = '0.13.1' + +homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' +description = """Generic PCI access library.""" + +source_urls = ['http://cgit.freedesktop.org/xorg/lib/libpciaccess/snapshot'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +builddependencies = [ + ('Autoconf', '2.69'), + ('xorg-macros', '1.17'), +] + +preconfigopts = "ACLOCAL='aclocal -I $EBROOTXORGMINMACROS/share/aclocal' ./autogen.sh && " + +sanity_check_paths = { + 'files': ['include/pciaccess.h', 'lib/libpciaccess.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb index cc4894fdf1c07a156a10280109aca45e5285a2d6..8ee0aa46376e9a9670f1b5d4ba85aeae6f19e4b7 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb index f95a1d02fd920f16282d161787a2ab587ed75a2b..8bad0c4e8768cf48f1e21b799de5feb16bc68650 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb index 2ee1bbddfcdb6bede7669ef9733c426043aea629..3e6f94792d42d7900f5cab07ba151ac26187030f 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb index a975b4c5acfabe6de352188bc1765563e425a810..0eb2b15e90118fd78c2132632d751f171077aca4 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb index dfbd0cdc9fc7925bd95123cc1cfe789d1626c1b0..a6b23b41f43ba3e5b4a43c3aa98890ae5ab2a19d 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb index 6210a640c2319fa20ff247740613aff209c24365..7838b73a7f168ed21b515cc7135527149a2d5df4 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb index b90c8fd0e80b77c9f4803e1c750566c279c84df0..da5e44bbae1e753ddff8d1725c57cd14c17f46cf 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb index 17cd13e717b81be2e70ba0905a60092717124f96..40d2ceab463dd6fde9e50f723f6dd1ed59185c47 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb index 97ed1ebf8d020ab55bdd73bc45f5f9ec652c3b0d..c256e56b1a78ccc88bdefe46091d760f4ae55d04 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb index c8567a9557eb9464b3a367eaf0e0db637dee8cde..3e4f276b259018fcb3699b967bf3e19a30df99f8 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb index f261e84daaeed3e291f1cf0134e461165f8607e6..d8f3d31c2c98819cc680df7103c198d23e1f4171 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb index 0e9068b97f72bdf4c2354bc39a0967b0690a7965..848af67ab2b8d9dcaa9a3a54d6683d268fda0a00 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb index 7a084f07e73fe716759fcd1df380cb84f70dff4f..79eddf253709fb24b4f79e6222f1c066c2aa5442 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb index c6aa4a8a5b9f6ac7ff1aa6ef0aed1e265b21adbb..fbcb722f706725d4250b72cf5134ecf45d816544 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb index 4b24a56c5ad18f13a7dba0ad1b473d9f104f403a..cf81907b250b69ddb944532abdaaa5d5bb6b7b0c 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb index 0ff4698c7c3670dd1b02be19596088ecfe79f489..615cbae8c64f36fd231d60b7e2390d2b8a3c3004 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb index d868921c8ae8d6330dcbcd99624945a0bdc65c39..3b118ba80640b1fb53f3dec25aed3df4b429a66b 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb index 5331872888d95ed74babf94c7ebcc9828cec464a..9e16b44ccb5594b11d9e0dd6410b1461e3f233e6 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb index 4e1e863110de3fa471b6936a91f8533e6bdc7fa2..c67d2249d57513b5c5c1540e2d951a6b73847619 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb index 800a4ad69cf193a4bb40359c5b29cca227e24899..dfc6f1d8048cf2347d5388364647c496ed60c2c6 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb index 4ef2e44f4ac813cda8e1892a17671f71cf61ebdf..93ce285e5484d89ca93d10073b112f83c3bfc9e2 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb index 48105ee7c029cd7fb0ee147248fe738d3ac0f5cb..a7a887af098e64dd4c44c3fc3f37d8646b3ca6a2 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9214a19f5678947e1abc5c014530f691c3b7d9e0 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.10' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.7')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ce0e1a55412359592e670af0aeebcc38a09a1bd5 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b0cfb6ad7f0929eea12988b38c6e4e4295767b6a --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..13237337d27aadee951feb4584d26b512d91114a --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..ba247c4f650718f45dda20d4885e6090e2354c53 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..17246d979805dda95032639d8f16b1de7cdf07a2 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e0dd3230916dfe85d2806a67a63eee20e83a8a8b --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..634458c7c9e62377888c0f071811dda9b6d20cef --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..23292508e73e1e63901f023c3790945353317e86 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb index 45172f31b75038e7fd11d1354b096a92bfe1347f..e9f40603354296fce150646004adb44259f3b982 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb index 9a8c1d6f78931146b7902872b68e2e1b1d90544a..2848d5b2449faa50160ab68fcbc68ce791c43f17 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb index 55682f57ecbaed3f0102325771a98c875b198636..d70786f9cb135df2212dc6979a036ea332a69609 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb index e2ad25290c6e46a7fdf48178d0f277d9ab55251a..e9bb80bc570e1a880d97c17ed055281a9a0f0e35 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb index 97d934fff288ec337028e396af54a452dd299868..20b9332c8c6ee7f2391111abe4366ca329455848 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb index 5cac7b92a2cc51d362e8025ce6a0d3c3c064bc09..52efefe84eac968c075efc80063db780970da754 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb index 7cb1ac2c09bf6b64091b82910f7b6fd7d5202caa..3e2786dec3d119c02ff93e367a902a1508e9a90c 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb index fb9f32baf920e97d51c596f409221cbbe0deaf36..f3ae59c924ccde163c9ca6b461d196d3fb952d6d 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb index 2701d0d2b6db67b97d434e5c4986c8f5aafefad6..da2685ac60c402ea65f2ef419f8b46b07198f1e2 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb index 3e4fd3d65269e74f35b4a0e9abab38ca8ab4b6a8..d3522e5cc3f02d8b36d1eb793e5010c57d06683c 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb index 3abbc070902c41d575b796c52cabb391538ee3be..1dd7c7b3884eea9e3f8b71057b220e2edfed28cb 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb index 150ca35db4dd57c92ece9ec0f19d60860fd1cbf8..4d72b05a8989e2578e7f8d8283d9b2f0d212a932 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb index cc63b4067dc468cf26f39404805d5871e940d0f3..fdec216e863940cc5866449763f44ef920715218 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb index 37cc1311ee1eeec6cebc66321af7f08a3a8a04fc..193b03bcacbd4dee6f75266bfc39e73106788b2a 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.9' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9e928c536ded433eff3f4f66653ad708399fde6d --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2014b'} + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb index ac559749a6b917efa9e577ec5ddc131d19eeddb7..f829f915ab6597136901000c734dc83d981a6a43 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb index 6fa4da3becdf914f62b77e085be1e0a3d19870a7..1b25208919d5b1d5a6427f76cd979908683ad8e6 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb index c69f944cdb57fc5bee0c38698701a311db661d1b..9f980a8c825637ab625cecdac48d3ae7fee1c24e 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..f73ab22a6e0cb10e444f4e441f4b24f911227d63 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb index b441c48f488cb1422de979c84f1e4b7c1bd58111..1c780648c6cb3a3d8ed1ef54650a2b11fb87fa5a 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..718b266c0abb9341e2150eb827c82e976c757da1 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..46dee523f9afb65b6caf1a994885c3cb04202f40 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2014b'} + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb index b10410592499c3277fbdf0ebab15b57f529c203c..8d1588dc4cc5e4e91dde3a341cff3eec703c7e9d 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'cgmpolf', 'version': '1.1.6'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb index 08386dbd84637da7435fcfcf23676955dcec9d60..1c24eeef03e229a46876c88443624444ecbda379 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'cgmvolf', 'version': '1.1.12rc1'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb index 5bc72063216f46f637e3310c868c0111f1c266d3..bdb329077c64d258b751681f7a0b3f040cde7c50 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ additional functions to maintain a list of previously-entered command lines, to and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'cgmvolf', 'version': '1.2.7'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb index ce9ce7a0dcdede9973b173fa64410959a7df45b0..3e8727cebdeb1a982df38f8c2892f68baaea2082 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'cgoolf', 'version': '1.1.7'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb index 4b179d3ceac2587fc94bb6056c9e2baae60b52bf..31ea04d7f7a4f4dad7a4384f5dbc326d93a656c9 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb index 4a3a76f70d534bc7f2907b267eb02ee737d8a3d5..e784ea0d0234d8977f86f3fbda35857a70729a02 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ additional functions to maintain a list of previously-entered command lines, to and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'gmvolf', 'version': '1.7.12'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb index 04dfce7349d89299e9d65806985ea2e66619b9fe..b7bbfc8f3f2a3205c44c5f857c0a043c7c7efb9c 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'gmvolf', 'version': '1.7.12rc1'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb index adb81073543b273ee1d373398c37e03972c1a647..e797af8cff1fadf04e38033c9a171cef877818b2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb index 6829e60dce278d8b34cb39845102779f817fdf58..a5bde707ae20cac87e40bf78dcf2b427e25e9021 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'goalf', 'version': '1.5.12-no-OFED'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb index 9a72756a8800b84693c001b56cc5724794adfd2a..9fcd98edf6a5921827ac5ec574c3721c857bec96 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb index 91a1a3db51a5c341e10bfa0ebe546a7a13302f14..c749a738d53417865827214666300e96d7309ad6 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..8aa471e23abc5f5e07e81e9de46665ee5d995577 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.2' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb index ebff1e197f6a37785538f0c7d2e4176ddd050ec2..b7c94207190250aae8e959dc93a0fd2bdd348b76 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'ictce', 'version': '4.0.10'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb index ec7c6dfb609fb3de6e9bb4ed5fee5df52521d62e..cbeb9a570ec390352bebdb0e2df980245a64ccff 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'ictce', 'version': '4.0.6'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb index 3edea96b6dea8807feb4bad6e93fd5cdd300b925..665c07b80cf8869295f84d475dbd77928d00090e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb index e77b116c77b542ce99e20bc5d684128906aca037..3740f0ff9bdd59d80dc874e4456bbffd1aff5b65 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,15 +10,18 @@ The Readline library includes additional functions to maintain a list of previou to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'ictce', 'version' : '5.2.0'} +toolchainopts = {'pic': True} -sources = ['readline-%s.tar.gz' % version] +sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] +dependencies = [('ncurses', '5.9')] + sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', - 'keymaps.h', 'readline.h', - 'rlconf.h', 'rlstdc.h', - 'rltypedefs.h', 'tilde.h']], - 'dirs' : [] - } + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb index 96c57993e7ed11e1adee3fc0a2d0a0fa8a5ea8f7..53abae746afaf6ac87d8414d462adebaa7530f49 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb index 309a843372414f2c90aeaffdc99369582e1da100..61dd8ec4a5297e2a3199eee8be2491d49df0c0a5 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb index 7ca5bdbcd113df19ba31350fa89af051cee3de06..77678dc0f27878511cc5b23545e3b9bf4aa13ceb 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'iomkl', 'version': '4.6.13'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb index f197ec170bfbca022d3af0a9041481c95053e7c3..bd735f0ac1ad673469d7db6c141b9ebf0cd7a648 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'iqacml', 'version': '3.7.3'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb index e8897e4b131ec863c6a78adc765d6eb4303fabe5..ea4961cd724e33061d3189cde4d9e942f07561e2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' @@ -8,6 +10,7 @@ description = """The GNU Readline library provides a set of functions for use by to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" toolchain = {'name': 'iqacml', 'version': '4.4.13'} +toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] source_urls = ['http://ftp.gnu.org/gnu/readline'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..c97399ea347d34515797d5c367d15d2fd38f95e6 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..51c99a34d48bbbd3a2cda89fba036609850fcc09 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..353ca8a348c9f8ce4b07cf7a0978e8f02859057c --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0ee343099850712a7103b8b3cebac853d9d2945 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..4e4a74b2471460175717f2a355b51354cb9f81b0 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..61c26fbcf13a33542ef145ea823ceee71e0705dd --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """ The GNU Readline library provides a set of functions for use + by applications that allow users to edit command lines as they are typed + in. Both Emacs and vi editing modes are available. The Readline library + includes additional functions to maintain a list of previously-entered + command lines, to recall and perhaps reedit those lines, and perform + csh-like history expansion on previous commands.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in + ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', + 'rlconf.h', 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..b01870bd7e35de8f33acfd9a6b01eba5ad17046f --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """ The GNU Readline library provides a set of functions for use + by applications that allow users to edit command lines as they are typed + in. Both Emacs and vi editing modes are available. The Readline library + includes additional functions to maintain a list of previously-entered + command lines, to recall and perhaps reedit those lines, and perform + csh-like history expansion on previous commands.""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in + ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', + 'rlconf.h', 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..79d3e499ee639f69d19edf5c40c85afb15502280 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +preconfigopts = " LDFLAGS='-ltinfo' " + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9eac3968765eda8e31fa922880d8baf51381d71b --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1461617d20a4e6bc7c28531220c25a3a8d815dfa --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..aaf3b343c5fdfa570aa09edb9ab6d4bbeb6202c8 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb @@ -0,0 +1,14 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries +behind a consistent, portable interface.""" +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..fdeaf140c10ba4cd30da4cce5f01094e9477178c --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb index 175e45137463f44cfa85d0d8902360c195fe3f15..d8ba582adaec7c08e7ccd3ea470c6bc65f08e2ae 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb index f40fb3df887eb65f3ed1453cf1f2029702bc0265..d75220ff039c2947be036b3009e15b81f8546d9b 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb index ff247a01fc60ada9618f1fb208e45ceab35fcd1e..cf4ec0fba352781a64222232ece0e3d9e1cc2920 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb index 5002055bd1f3bba79e5e8f3c29c5a14479ef54e2..a9c05667103236c49cc90797bbc69b85cf48c606 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb index 04bf2df64f4f635e5473c1aab0c8e1ae9dd69721..e54f9a35f121754270dba3321bbf9fed088f0c29 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..d66bc90859521db8498e88e4271fbdf4fefa7efa --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ba9d4738db41dcd9a240275bff296ecc7912c77 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..f1e3238f19527b4ea6192b88ccfc41f71e92cc63 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.5' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +builddependencies = [('M4', '1.4.17')] + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..a0c6a258a8085acd0019ae315d17dde3d1611a56 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.5' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 4112ecb99d76cb65e2d99c793d7deb8da5f877aa..4ae4db7879fd0fc599fd6ee1ba40a9075e2dc049 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'libungif' version = '4.1.4' diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index 9f7a03d367ba598408edd50b2b711016de922089..51b4352aa597c4a658fbb0f2a0040b3beba97599 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'libungif' version = '4.1.4' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb index 7c980a4ecf8395c3ba774eb9ee0259d516cd5def..f4fd06b4bf28f510185a1c5a33515264edc38c75 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb index ac85cc483414327efbff0d2d8ee3e74c08cfc10d..5a3eb453b781fcba2ceb3997b724dea55b805320 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb index 60198552d3dd499f46ac785f1e0f980184cd01ac..96c55fbfae32102f4968b47a5b69787854c62044 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb index 638d735185167c74f73e3bae00e64f469e3872aa..8f07cb9c8e58c2ec8daecbe8141dd49e67005b94 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb index df2b6201e1711d21883394b6dfbfe2d91344c1ea..957e854ad961127a11789b5cd1809e2aaa8ec378 100644 --- a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "libunwind" version = "1.1" diff --git a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb index d3931fac837ce47ccab75ed85109d6bee8b4d6c8..505985144323a2ad807cfdb71f4fcee5a8c8af4f 100644 --- a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "libunwind" version = "1.1" diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb index 951aa3a6059ee253186585d3adefa166b54d4eaa..6d8ba273cc85cf316db5f1961ac898fa8f4de066 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb index 4515ef18e78b24031b5dee1c5d8dddd2aebc2ad6..527700c8cfec3dace2efcfceb3769ced4ab940f4 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb index 5260edfb1876f7c7fd314988cfb5f670e23d1e77..75f790529979383a3972715663bb746174725265 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb index 197378d1babc98b6aaf33974c5600f8d56a7bba8..16b3b342945be71d910b26625af28022e5cc725b 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb index 7b83d19f9ba0c8c32e1593cb2518f2bd2f2d713d..67b912636d604431949a6930df2bf68308cefb5c 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d8bcb279887b19734bb7ed44c76b9651c29cd273 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.0.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="$F77 -E" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb index 0ad38c462e1a65649508acf2c47f43f2206322a8..cb5559a2e4934e19db1df7f86815522432276532 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb index 342eba4e1a572ced163aa657045204734fa52686..33d403016122fda035151da5d0ed7b674bcd2a0f 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb index 3745935062e650dcf883d4f3824fcf565095af32..58b1cd150354b5bac212c27d4b1713daf4aa5a7c 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb index 9b043454fa26eb2442f1966dc5e17d05df561052..d4a9249a7fa9b71f64f6294d5704fde24bb0f9aa 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..119c74e739c6c636f3c068149ed8b297bb8f50ec --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.0.3' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True} + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="/lib/cpp -ansi" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..64b37d779cb76456927e384a41b24b866d72a651 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.0.3' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'opt': True} + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d3bacbccff572ccdf82b82a1622523f6445a5a47 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.0' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9ed080064b7e680cc4d999ddd8f87f14ea328766 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..642e8c5309cc052b0cf97ab29001dd2bb531dd18 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('xcb-proto', '1.10', versionsuffix), + ('libXau', '1.0.8'), + ('libpthread-stubs', '0.3'), +] + +#preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ae3d3fbc40c7c0d3f627467989c0e9ededafabb --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('xcb-proto', '1.10', versionsuffix), + ('libXau', '1.0.8'), + ('libpthread-stubs', '0.3'), +] + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 2b8220d832dc8f155f2e0cce93afac1cb8655e0f..c58daba38a2ac362412a20b0036a6d025ff84daa 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb index 2f5fe48a09ab9a54868b423013d26b4eb21a3006..3be17369402f2b29092e07b3e560cc9825a0b087 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb index 954d302dbca357f684211a5da3a43c74625576be..6d757e7d793f43021c1f60103909e24b17499599 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb index 2abcb9f275d448c749150feb8e608844106aaf22..09100be56b7e602a0fbd4d3aa0efd746d1a8b640 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb index 174f6513022fb4acaab8f12377df749eeb766945..879b645f96be8cc8376cd554b053919c2a96e94f 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..eca2fdff48c14e5c1f1c11af774c0caf5d7d3bf2 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.8' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['libxcb-no-pthread-stubs.patch'] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [ + (python, pyver), + ('xcb-proto', '1.7', versionsuffix), +] + +preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..e56d2ad35387bc1da3b636f7aaf3b49f168c8d13 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,27 @@ +name = 'libxml2' +version = '2.8.0' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic' + +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('zlib', '1.2.7'), + ('Python', pythonver), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..ef442f4bb59b2ad3581e62c7593b6e643358c012 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,27 @@ +name = 'libxml2' +version = '2.9.1' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic' + +pythonver = '2.7.6' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('zlib', '1.2.7'), + ('Python', pythonver), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3194637d11d4b6021ff32f38c77d4469f1d361ca --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.1' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..102c2914dbfbed3a7a942047bc970703f0db36be --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.1' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..12454bc9c490647eeffee3f3707f9803095c0854 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..84a2d133c68d3ed02c317d55937dbc20880915a5 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c643283ea533a84d1d052e869f1c9e7913470c11 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.28' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('libxml2', '2.9.2'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb index 5d2945e80500a2365ae46dc1e14323d5a6f73758..72516b06eac95e6c568188b4b049f0523f4fb7d8 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb index 2489dde795f7ccd475874d2f02cc4871fb96ff87..36936924d965fc75668cf7543a929bf17cff74b3 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb index 94fcfa9a74d35133af0db6251247a312e7e21b44..7e80985396782c178e5d11dcaeba4d76cf2fe40e 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb index bbdbcf88a1a1cc827140116e3a70970cb083d720..12e23c3ccd676322c2149d88962f5766efcd00fa 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb index ef74dc3640184c20b28ac7f11e31c4a5c54f0be6..90e2d917d46c881a92f04136a8a470ad153cb0e1 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..31f8acfbc80a4f122ca29f0fc73797513defedb8 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.28' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('libxml2', '2.9.2'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index 4100089cd7208b07964f10d91704616cec4dadbd..c595540a201c7e6ffc34a8452fc5b6f799295fd6 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'libyaml' version = '0.1.4' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index a95559c5e3ebe19889ef1c26f5349d72a6badb72..0e518d9646e1b4d3b58de74515442f0221acb27e 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'libyaml' version = '0.1.4' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index 46539edaa0e0804e23bc2dd0022df8818226b5ed..750f58b2de85e102894d0e0c15555faa753d3783 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'libyaml' version = '0.1.4' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb index 0ee7a1071374e078125e697eaad57588e3e50e2d..c2776bf36f2339c842bdc23a38a7b9128358b4df 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' @@ -14,7 +16,7 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb index c9e9611da0d03a0509fd00af505971337642d431..124ce106488aa2c5c1f02a90f60ad50b42d397a5 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' @@ -11,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb index 7cea9299b067fc6d8a894a9914d0be2e9f1d98ed..98e3f2bc6930b1f173dd5d5b21eb9e02932ab353 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' @@ -14,7 +16,7 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb index 8baa632b4ea8823b40290966f7603bdeaf5784f0..7008e1d1c4944465f3a9822be0a476dc3ca5ebfa 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' @@ -11,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb index 9c8a819adffcacaed013f7a8ce26f8de5f3bd19a..a7934235d050296e991e73d486b8b0c9b3646da6 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' @@ -14,7 +16,7 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb index d5b31f0b69bc986b9c28297b94367c5861cf60d7..0202739bca00601192ccd4d72f9d59cce372c9e5 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' @@ -11,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb index 3561d3e5e5937aa33d3f78e0334275685273ddef..0bcdcea56d7348ab46007dbc1b72f6f3fe15ae2a 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' @@ -14,7 +16,7 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb index b3687e8cbaad24b0b03592cc6dbce8b06d813887..357fb0550dfd53cc57c3b5b95dbbe987e5ad934b 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' @@ -11,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -makeopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts='CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..63f25c7e42f359ae9175d48b07483e71e2899c81 --- /dev/null +++ b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'likwid' +version = '3.1.3' + +homepage = 'http://code.google.com/p/likwid/' +description = """Likwid stands for Like I knew what I am doing. This project contributes easy to use + command line tools for Linux to support programmers in developing high performance multi threaded programs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://ftp.fau.de/pub/likwid/'] + +skipsteps = ['configure'] +buildopts = 'CC="$CC" CFLAGS="$CFLAGS -std=c99"' +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", + "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", + "lib/liblikwidpin.so", "lib/liblikwid.a"], + 'dirs': ["man/man1"] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb index 272a75abdf9e23b918fbaec00f117a6749d48c4a..e70401308cb1aff385749a3bd0146c7d75ca786b 100644 --- a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'lynx' version = '2.8.7' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb index 85a2cf017bfeede4b6ed0cc3f7f085a8d8c17e60..192056f471ea1a76eee8508893884ac9f3c92515 100644 --- a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'lynx' version = '2.8.7' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb index 8935b8374fc4a9a3d704d6c599d6fe15b1297d69..2b02e64ab0cd4d1759c1e72c88d48a85f8f57504 100644 --- a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'lynx' version = '2.8.7' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb index a48c5487adae5cf36c48cf01f4ae1a55d333db47..cb0358527844db186dc329049359d94218869f91 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb index 9bf8740cc6a8213c1c0b6a196a5c2c40d7573945..41439b89039cc8650f1697fff7d01de9fea10cdc 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb index 607e6bd0b58a6ae0b8460a92939a02ec75de700b..9f33e2cf1a5f13c1e022ce82e44dbd8a0228b83b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb index 0560144686eb6cb9d6809f33b2a412a0f907c2fa..ac895a813e97993650c3b400c5d31dd91aecb8e3 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb index 5bb719ac95b78f2765a27b756abe01e0f362a98e..a3035c0940a57891ca0c7ffd56363a6d1bb8331f 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb index 55cba29b685d39b42236ec28526dfcf4ac0c2e73..a4abda33a992e54364dc326760fe327f21b4aadb 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb index b0ab4edf27ff7f852017ae843e49030a10280729..608f719296ed1db12b08e344133c13e814c024e4 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb index 68b005dc521189c5edb49390f132eead50e655e3..26579d3df8748eecae2e95ffc0bde6fc9dac6f78 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb index 81a49cdbe3783dd3be76aba94824d8488c31d6cf..0f887ab31a0d2d8eb626736692af9396d7b64ef9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb index 410fbc75ce627f1ca7152cdad8e390ece4ef173e..9ced23daf9efed0050dcb24cfaf76af167bf6f3b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb index d66d8b9e4e2c3e4e9ef56af60a08c3c45f0834dc..f3e91d0941423527c4f6e13c7ba32d1053d10241 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..b2b44741465cd4bc3595fb272c77d10b713f9145 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.16' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. +It is mostly SVR4 compatible although it has some extensions +(for example, handling more than 9 positional parameters to macros). +GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. +""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +patches = ['M4-%(version)s-no-gets.patch'] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb index 925e8c70e66bbbcb2fee1ab499c04fb7baf14edc..e48cb5fc868c6d7b6d480714672b48ce08284625 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb index c344494bc39c21c817954cf65d238e6c7dc364ad..f8a42958428722bf8a694ca1af2bed62108cc261 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb index 3c8fbd6746fbce1a2101f87f7bc1f87820bda1ed..be4bfead9b6bcee63b88d1902bbeb30e59eeea44 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb index 7915e22d2ee7e6f9c0ac1c04027b3ac6a6730c83..c647012bf69a241c1a3b0e725911ad0846876f49 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb index 07b38b035956ccd4024e1cfe667b4423d09f51b8..a7f7a66b5b74080db4c84917fa73be3e9131263b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..729b469bf9c444f54e6d4b30a8a2bad090944f03 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.16' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +patches = ['M4-%(version)s-no-gets.patch'] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb index 98f82e41c42c3d30b79f37c26dfb8aa0a4c2e86f..7e58df6535be5ff84c03307633e723f69ce96a76 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16.eb index 50af850a5a2a52dcb158ca567f6fd97cd9aa445e..749164bc5ec1bdb010347abe987f4c40cdb34fc4 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..c2e9e524263cf8b1ad1c47ff8bf3122339382036 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..90c7eb901795056f3886b41b97c523aebb22d6c9 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..372d1c346d6ba6bfc2c7f0d3024dbb9dad988c21 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb index b122fe2d09c6320e4b3f58e505a4b0a02583aa92..e8d95f1f54580e10eab238b13fea40fe38ba2828 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.17' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..68b3d851f696c48726bad1c53ab6fd40c7d07cea --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d6a8a6e705f5ef75ad38737c691e658c401b43ee --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f842bdc90ab31d328074da745a9f0b6503455219 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb similarity index 97% rename from easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-goolf-1.4.10.eb rename to easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb index 0fd4f0bb047d29db86c423efed5325ab485a0267..66ff95669d4e5ecc43601beade4f76801e92974e 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'MAFFT' version = '7.130' versionsuffix = '-with-extensions' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index 58ac52b6123f51a043140930158e801ab08092a3..54d1c4d20bec738822a06108cd274a63747dcb38 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index 20e7bbf03d13777474083b5ec7f8c0759fd84d97..0b7a65ab006bf8fc5243daff1d0b8e4f07ba760d 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb index 9708f312928cc1611d63b52a7d4d0121a7ed8c32..b2dec05ab596833231db741b8e3fd3407cb4cf20 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb index 3b883bb438a7df5a0f2d42bede22ff25a1c4215f..26b2a9bb86086571f18356fea47fc0b2f07bf3ae 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index 802598d83fe4804684fcd2ae6f9fe895a8070204..b84227a5587900147de9f0be13a575530de5a0b4 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index 3a9d4b603a606bff1a6b1baa57691da24d7fc2fc..4a37b2243da67504c86aa7d2c338b4aa8c9ba376 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index d141360b8cbb8c30f960487ca72a966b4f7f4e01..c2f466b38e92909895e96027208eaa2c110634ca 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index 325e2a7b056bca6fb576272d4514eb6f3faae1f2..2079802769802ca95ca3c600a2aea982381aed59 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 535f3995e4356327f780ece82714857c25a8c290..e039fb1fe516fd586d281d2316216dcb0930c07e 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/m/METIS/METIS-5.0.2-goolf-1.4.10.eb index a7cbe6305cbd3aa61f683e90e44a81b868847da2..b5b24c00418015aece924e61def42ef84e069b1c 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.0.2-goolf-1.4.10.eb @@ -14,6 +14,6 @@ source_urls = [ 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', ] -dependencies = [('CMake', '2.8.4')] +builddependencies = [('CMake', '2.8.4')] moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2014b.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3a2262b915525eb43413416bd9e09d0f02bf0a6a --- /dev/null +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2014b.eb @@ -0,0 +1,22 @@ +name = 'METIS' +version = '5.1.0' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' +description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, +and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the +multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', +] + +patches = ['METIS_IDXTYPEWIDTH.patch'] + +builddependencies = [('CMake', '3.0.0')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb new file mode 100644 index 0000000000000000000000000000000000000000..e59bc4367084df74c0cf8d2f9ba8cb3c2eb99e3f --- /dev/null +++ b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb @@ -0,0 +1,26 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'MMSEQ' +version = '1.0.8' +versionsuffix = '-linux64-static' + +homepage = 'https://github.com/eturro/mmseq' +description = """ The MMSEQ package contains a collection of statistical tools + for analysing RNA-seq expression data. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://github.com/eturro/mmseq/archive/'] +sources = ['%(version)s.tar.gz'] + +sanity_check_paths = { + 'files': ["bin/mmseq-linux", "bin/bam2hits-linux", "bin/extract_transcripts-linux" ], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d5449c24a44d8951e22dbf6840ec3f18e43de7c8 --- /dev/null +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'MPC' +version = '1.0.2' + +homepage = 'http://www.multiprecision.org/' +description = """Gnu Mpc is a C library for the arithmetic of + complex numbers with arbitrarily high precision and correct + rounding of the result. It extends the principles of the IEEE-754 + standard for fixed precision real floating point numbers to + complex numbers, providing well-defined semantics for every + operation. At the same time, speed of operation at high precision + is a major design goal.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.multiprecision.org/mpc/download/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('GMP', '5.1.3'), + ('MPFR', '3.1.2'), +] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2efb366e000846d650b0639d4800be3354f82048 --- /dev/null +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'MPC' +version = '1.0.2' + +homepage = 'http://www.multiprecision.org/' +description = """Gnu Mpc is a C library for the arithmetic of + complex numbers with arbitrarily high precision and correct + rounding of the result. It extends the principles of the IEEE-754 + standard for fixed precision real floating point numbers to + complex numbers, providing well-defined semantics for every + operation. At the same time, speed of operation at high precision + is a major design goal.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.multiprecision.org/mpc/download/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('GMP', '5.1.3'), + ('MPFR', '3.1.2')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'dirs': [] + } + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb b/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..6de1d0207b996f14cdc2c3dbaf6ba87f59c8bf62 --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '2.4.2' + +homepage = 'http://www.mpfr.org' +description = """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('GMP', '4.3.2')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb index b27bf24d52d0d5a0167902fb12964609d1b33b3c..e1e468ad293d1521046d9065bc6077e52c5bdc9f 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' @@ -15,8 +17,8 @@ dependencies = [('GMP', '5.0.5')] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpfr.so', 'include/mpfr.h'], - 'dirs': [] - } + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb index 7a7294fd68e729fc6093395dbbfa8e75844f9769..ea4e59e58bc2345efd5d4226eefdf5277d8b26a0 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb @@ -1,9 +1,12 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' homepage = 'http://www.mpfr.org' description = """The MPFR library is a C library for multiple-precision -floating-point computations with correct rounding.""" + floating-point computations with correct rounding.""" + toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://www.mpfr.org/mpfr-%s/' % version] @@ -14,8 +17,8 @@ dependencies = [('GMP', '5.0.5')] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpfr.so', 'include/mpfr.h'], - 'dirs': [] - } + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb index 18bf1449fcd74ce6e24833845d216a27d58852c7..074ca299070782e94a66c6935b33c74bc24e5249 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' @@ -17,8 +19,8 @@ dependencies = [('GMP', '5.0.5')] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpfr.so', 'include/mpfr.h'], - 'dirs': [] - } + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb index b57ba0524058b259fb3a3ea6e1935ec036dc0277..501dc188994efbabcd0ae46583e430c6f2b94a06 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' @@ -5,7 +7,6 @@ homepage = 'http://www.mpfr.org' description = """The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://www.mpfr.org/mpfr-%s/' % version] @@ -18,8 +19,8 @@ dependencies = [('GMP', '5.0.5')] runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpfr.so', 'include/mpfr.h'], - 'dirs': [] - } + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4224e2bf0a847a73dcb2261c39bbb1992fbed870 --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.2' + +homepage = 'http://www.mpfr.org' +description = """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +dependencies = [('GMP', '5.1.3')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..11e14c220af7e82a02427cd00e07999bac6a86fc --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.2' + +homepage = 'http://www.mpfr.org' +description = """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +dependencies = [('GMP', '5.1.3')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb index 971d6adf6fa02c2157929c3c96e9846f71f029f1..ecc1ac48366107246160b4e4ea55b90b379bb9ca 100644 --- a/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPICH' version = '3.0.3' diff --git a/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb similarity index 95% rename from easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb rename to easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb index bccfcd087b0a78700915ad0eeb68d4f0ececdc73..ffd62dfbf726924b004b15263d2d0e75b3ab74cf 100644 --- a/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb @@ -1,4 +1,6 @@ -name = 'MPICH2' +easyblock = 'ConfigureMake' + +name = 'MPICH' version = '3.0.4' homepage = 'http://www.mpich.org/' diff --git a/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb b/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb index 9259eb9514b4b2813f466aa94d933a5d6712e6a2..d8dc782b0744b167a936d73d3581bf90c4306062 100644 --- a/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPICH2' version = '1.1' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-gmpolf-1.4.8-metis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-gmpolf-1.4.8-metis.eb index 24983fd5fd66a420760d3dd1ed1a3e489ed97af5..770b1554cdf4ea34b7f8a8f2566c1f37e2c3c4ad 100644 --- a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-gmpolf-1.4.8-metis.eb +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-gmpolf-1.4.8-metis.eb @@ -17,6 +17,6 @@ dependencies = [ ] parallel = 1 -makeopts = 'all' +buildopts = 'all' moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-metis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-metis.eb index 062eb8fc42d8c94bdafcd6e187ad9ca7f3f2a26d..85cc1c5dff444ebe0bc80fffee802427335318d3 100644 --- a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-metis.eb +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-metis.eb @@ -17,6 +17,6 @@ dependencies = [ ] parallel = 1 -makeopts = 'all' +buildopts = 'all' moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-parmetis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-parmetis.eb index e4decaa1ac60a7e07b87e007c53b354d96af5bc6..d65b28f40cb62e63267e17525e6218237b5cde12 100644 --- a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-parmetis.eb +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-goolf-1.4.10-parmetis.eb @@ -17,6 +17,6 @@ dependencies = [ ] parallel = 1 -makeopts = 'all' +buildopts = 'all' moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-metis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-metis.eb index 9594227cb19ac3078f99889a5931d204e18a67e5..e02efd48ff5e08c072e5626b1708f9ddd0aa07af 100644 --- a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-metis.eb +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-metis.eb @@ -17,6 +17,6 @@ dependencies = [ ] parallel = 1 -makeopts = 'all' +buildopts = 'all' moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-parmetis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-parmetis.eb index 8f610330f9a789bf05115d559da29aa2ec12ef94..83739a5dd51b5feb9ce38a247b7ba8353ff2835d 100644 --- a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-parmetis.eb +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-4.1.13-parmetis.eb @@ -17,6 +17,6 @@ dependencies = [ ] parallel = 1 -makeopts = 'all' +buildopts = 'all' moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb new file mode 100644 index 0000000000000000000000000000000000000000..68ae128bf8356df415cf3676f224042c992bd9e4 --- /dev/null +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb @@ -0,0 +1,22 @@ +name = 'MUMPS' +version = '4.10.0' +versionsuffix = '-parmetis' + +homepage = 'http://graal.ens-lyon.fr/MUMPS/' +description = "A parallel sparse direct solver" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['http://mumps.enseeiht.fr/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +dependencies = [ + ('SCOTCH', '6.0.0_esmumps'), + ('ParMETIS', '3.2.0'), +] + +parallel = 1 +buildopts = 'all' + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb index 8ad0e5e710a211c73518b4d5ba907c05f2353643..df55442b24147a83a37f828ecb1ac80615e7adfc 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb index cc1c5b95286fca69e7d8d24d49f768bf3b5480c1..c1b84b6840f0e4e069852902e1dcf3679fc99829 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb index 3a1c6157f668cd1ac87c4692d77aa347aa618987..7f6b9e72b527fb6d617863990fabaa9825c6fd74 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb index ee85659115af03c8f974d99344670283059649b4..b12e9042ad312b0f8bfffe67da785d5ad5d809ae 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb index b85beabd730b7b87df74dc2e0d0e16ca254e642e..578f64de526f4b8a241114159d8d5f60eff6d9f7 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb index 6148c2da6e528e97262264d353bfc0074c00fc01..89fe1f89da0a1d8deb2821bf1b712bb8fff613d2 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb index e11bf5f61d1b52b28d0875ef144292a1e5f9aeea..2a22c67912d9cafc596eacddf5e8450fd51fffe2 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..0ce77f4dfaf03dbccc24a3295d2fda3e15ea621d --- /dev/null +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'MUSCLE' +version = '3.8.31' + +homepage = 'http://drive5.com/muscle/' +description = """ MUSCLE is one of the best-performing multiple alignment programs + according to published benchmark tests, with accuracy and speed that are consistently + better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users + learn everything they need to know about MUSCLE in a few minutes—only a handful of + command-line options are needed to perform common alignment tasks.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%(namelower)s%(version)s_src.tar.gz'] +source_urls = ['http://www.drive5.com/muscle/downloads%(version)s/'] + +patches = ['MUSCLE-3.8.31_fix-mk-hardcoding.patch'] + +files_to_copy = [ + (["muscle"], 'bin')] + +sanity_check_paths = { + 'files': ["bin/muscle"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb index abea0589061dce964b076923090e7584c25987e3..eb4529c9fa1612a92e77c2b1fe749e6da1c8841d 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Andreas Panteli , +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Andreas Panteli , # License:: MIT/GPL # ## diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ebd4dcac83259bf6172b758f7882dac229918cde --- /dev/null +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'MUSCLE' +version = '3.8.31' + +homepage = 'http://drive5.com/muscle/' +description = """ MUSCLE is one of the best-performing multiple alignment programs + according to published benchmark tests, with accuracy and speed that are consistently + better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users + learn everything they need to know about MUSCLE in a few minutes—only a handful of + command-line options are needed to perform common alignment tasks.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = ['%(namelower)s%(version)s_src.tar.gz'] +source_urls = ['http://www.drive5.com/muscle/downloads%(version)s/'] + +patches = ['MUSCLE-3.8.31_fix-mk-hardcoding.patch'] + +files_to_copy = [ + (["muscle"], 'bin')] + +sanity_check_paths = { + 'files': ["bin/muscle"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31_fix-mk-hardcoding.patch b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31_fix-mk-hardcoding.patch new file mode 100644 index 0000000000000000000000000000000000000000..32e357bc802fc35c2a73c14b0edefa2b981d3ce5 --- /dev/null +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31_fix-mk-hardcoding.patch @@ -0,0 +1,24 @@ +--- muscle3.8.31/src/mk.orig 2010-05-02 01:15:42.000000000 +0200 ++++ muscle3.8.31/src/mk 2014-06-03 13:36:54.675282794 +0200 +@@ -5,16 +5,17 @@ + rm -f *.o muscle.make.stdout.txt muscle.make.stderr.txt + for CPPName in $CPPNames + do +- echo $CPPName >> /dev/tty +- g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt ++ echo "$CXX $ENV_GCC_OPTS -c $CXXFLAGS -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o" ++ $CXX $ENV_GCC_OPTS -c $CXXFLAGS -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o #>> muscle.make.stdout.txt 2>> muscle.make.stderr.txt + done + + LINK_OPTS= + if [ `uname -s` == Linux ] ; then + LINK_OPTS=-static + fi +-g++ $LINK_OPTS $ENV_LINK_OPTS -g -o muscle $ObjNames >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt +-tail muscle.make.stderr.txt ++echo "$CXX $LINK_OPTS $ENV_LINK_OPTS $CXXFLAGS -o muscle $ObjNames" ++$CXX $LINK_OPTS $ENV_LINK_OPTS $CXXFLAGS -o muscle $ObjNames #>> muscle.make.stdout.txt 2>> muscle.make.stderr.txt ++#tail muscle.make.stderr.txt + + strip muscle + ls -lh muscle diff --git a/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9ce401d07a653da2bc214bdb85275f1f7228ede5 --- /dev/null +++ b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "MUSTANG" +version = "3.2.1" + +homepage = 'http://www.csse.monash.edu.au/~karun/Site/mustang.html' +description = """ MUSTANG (MUltiple STructural AligNment AlGorithm), for the alignment + of multiple protein structures. Given a set of protein structures, the program constructs + a multiple alignment using the spatial information of the Cα atoms in the set. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://www.csse.monash.edu.au/~karun/mustang/'] +sources = ['%(namelower)s_v%(version)s.tgz'] + +patches = ['MUSTANG-3.2.1-missing-include.patch'] + +files_to_copy = ["bin", "data", "man", "README"] + +sanity_check_paths = { + 'files': ["bin/mustang-%(version)s"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-missing-include.patch b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-missing-include.patch new file mode 100644 index 0000000000000000000000000000000000000000..2fe2e06a4fa22758cc59209d56b8c38d37e51054 --- /dev/null +++ b/easybuild/easyconfigs/m/MUSTANG/MUSTANG-3.2.1-missing-include.patch @@ -0,0 +1,10 @@ +--- MUSTANG_v3.2.1.orig/src/superpose_on_core_2.cpp 2009-04-18 10:30:17.000000000 +0200 ++++ MUSTANG_v3.2.1/src/superpose_on_core_2.cpp 2014-04-02 23:44:58.668808458 +0200 +@@ -54,6 +54,7 @@ + #include "read_structures.h" + #include "multiple_superposition.h" + #include "3D_manip_functions.h" ++#include "unistd.h" + + int **core_columns ; + int *core_columns_2 , NCORE = 0 ; diff --git a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.1.3.eb index fd7d023894fa678d97da91e784b98dd75e0596dc..6d98d3a0320ac9ff07dec1b382eddd0fcbd67d84 100644 --- a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.1.3.eb @@ -7,7 +7,7 @@ description = "This is an MPI 3.0 implementation. It is based on MPICH2 and MVI toolchain = {'name': 'ClangGCC', 'version': '1.1.3'} source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich2/'] -sources = ['mvapich2-%s.tgz' % version] +sources = [SOURCELOWER_TGZ] dependencies = [('Bison', '2.7')] diff --git a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.2.3.eb b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.2.3.eb index 229478ec5ed311a60dc8285f7adebe34c9fb5958..e1fdfb364f7904909bff6f0a79e2d0ce717a4c96 100644 --- a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.2.3.eb +++ b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-ClangGCC-1.2.3.eb @@ -7,7 +7,7 @@ description = "This is an MPI 3.0 implementation. It is based on MPICH2 and MVI toolchain = {'name': 'ClangGCC', 'version': '1.2.3'} source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich2/'] -sources = ['mvapich2-%s.tgz' % version] +sources = [SOURCELOWER_TGZ] dependencies = [('Bison', '2.7')] diff --git a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb index b140cf37c7b19d97c93a3747f9fcfd89516ae756..51fd98fd16be7d481ffecf7d2a521d221de2def4 100644 --- a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb @@ -8,7 +8,7 @@ toolchain = {'name': 'iccifort', 'version': '2011.13.367'} toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich2/'] -sources = ['mvapich2-%(version)s.tgz'] +sources = [SOURCELOWER_TGZ] builddependencies = [('Bison', '2.7', '', ('ictce', '4.1.13'))] diff --git a/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb index ec819fe6b64d2d313cab9e33a313b9abbe364dfe..63213cd9a5df2cb3a129482a60bb7525e6e40188 100644 --- a/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb @@ -21,7 +21,7 @@ dependencies = [ builddependencies = [('CMake', '2.8.4')] configopts = "-DCURSES_LIBRARY=$EBROOTNCURSES/lib/libncurses.so -DCURSES_INCLUDE_PATH=$EBROOTNCURSES/include" -makeopts = "VERBOSE=1" +buildopts = "VERBOSE=1" sanity_check_paths = { 'files': ['bin/mysql', 'bin/mysqld_safe', 'lib/libmysqlclient.so', 'scripts/mysql_install_db'], diff --git a/easybuild/easyconfigs/m/Maven/Maven-3.2.3.eb b/easybuild/easyconfigs/m/Maven/Maven-3.2.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..c78d5ecd63059e4906604434d5634d308d830a84 --- /dev/null +++ b/easybuild/easyconfigs/m/Maven/Maven-3.2.3.eb @@ -0,0 +1,23 @@ +easyblock = 'PackedBinary' + +name = 'Maven' +version = '3.2.3' + +homepage = 'http://maven.apache.org/index.html' +description = """Binary maven install, Apache Maven is a software project management and comprehension tool. Based on +the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a +central piece of information. +""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['apache-maven-%(version)s-bin.tar.gz'] +source_urls = ['http://apache.org/dist/maven/maven-%(version_major)s/%(version)s/binaries/'] + + +sanity_check_paths = { + 'files': ["bin/mvn"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb index c6d4999624cc3fb247f2dca0f84987f6a801ab5d..c4caf8f33fe1cf971350c51d85d648f408c4f533 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb index 7b27d95b42c17386ba28f05fb757cfdfe799d957..9c0e3d28b0fe66fbdca84721e64096d5bf7f5339 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb index 7b473e1b0b813903a980479c40799b5c8fa21f9c..99b133b3f5ba3174290b537490f01ef299f4e1ba 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb index 98db62a6c1d6c5e982f78fc1e773e42d4e3e4c55..67e5d881fbc1d1eda6a3d2af898beb923b115efb 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..047324c714fcb36e29f45227996538a1cb86b930 --- /dev/null +++ b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,29 @@ +easyblock = "PythonPackage" + +name = 'Mercurial' +version = '3.2.4' + +homepage = 'http://mercurial.selenic.com/' +description = """Mercurial is a free, distributed source control management tool. It efficiently handles projects +of any size and offers an easy and intuitive interface. +""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://mercurial.selenic.com/release/'] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +sanity_check_paths = { + 'files': ['bin/hg'], + 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index d3ced86b9da93b802d36fc04a6da1556bcebedad..11985c41cfaf29544eed364418c0d9fe1590e1ce 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' @@ -42,15 +44,14 @@ configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demo # package-config files for os dependencies are in an os specific place preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -premakeopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', - 'include/GL/wmesa.h'], - 'dirs': [] - } + 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', + 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], + 'dirs': [], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb index aa7d43dd2e234fc74128ca7860981c94564d8fb0..0efe09a06f4260b85ce18d2bfa1943700fc3b012 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' @@ -41,15 +43,14 @@ configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demo # package-config files for os dependencies are in an os specific place preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -premakeopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', - 'include/GL/wmesa.h'], - 'dirs': [] - } + 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', + 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], + 'dirs': [], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb index 2b0c88be6dddc091500593ddeefb2f37e8c10085..7c14a3454506c7db7c8a5696d1c938e22b641eb5 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' @@ -42,15 +44,14 @@ configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demo # package-config files for os dependencies are in an os specific place preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -premakeopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', - 'include/GL/wmesa.h'], - 'dirs': [] - } + 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', + 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], + 'dirs': [], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f8581ed6aba38000872feb72845a40814548049 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,57 @@ +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '7.11.2' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'optarch': True} + +sources = ['%sLib-%s.tar.gz' % (name, version)] +source_urls = [ + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] + +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.8.0', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') +] + +osdependencies = [ + 'libX11-devel', # Xlibs.h + 'xorg-x11-proto-devel', # X.h, glproto, xproto + 'libXdamage-devel', + 'libXext-devel', + 'libXfixes-devel', +] + +configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" +configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" + +# package-config files for os dependencies are in an os specific place +preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' + +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' + +sanity_check_paths = { + 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', + 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb index c2adb7e2f239e2f934d87298d8d66a084ab4fab8..fc5542e2ee708e03b793fa7e2262e6bbad09591d 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' @@ -43,15 +45,14 @@ configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demo # package-config files for os dependencies are in an os specific place preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -premakeopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', - 'include/GL/wmesa.h'], - 'dirs': [] - } + 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', + 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], + 'dirs': [], +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..3534cda3ad65c631c4f02782d87f97749fd500f6 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,59 @@ +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '7.11.2' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True} + +sources = ['%sLib-%s.tar.gz' % (name, version)] +source_urls = [ + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] + +pythonver = '2.7.6' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.9.1', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') +] + +osdependencies = [ + 'libX11-devel', # Xlibs.h + 'xorg-x11-proto-devel', # X.h, glproto, xproto + 'libXdamage-devel', + 'libXext-devel', + 'libXfixes-devel', +] + +configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" +configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" + +# package-config files for os dependencies are in an os specific place +preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' + +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' + +sanity_check_paths = { + 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', + 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', + 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', + 'include/GL/wmesa.h'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb index 68b40b09896a38c92edbfe73bb21e9458330c0f6..ec4e0d99c17f46740f069088319be36fa423f873 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb @@ -1,13 +1,15 @@ +easyblock = 'ConfigureMake' + name = 'Mesquite' version = '2.3.0' -homepage = 'http://software.sandia.gov/~bktidwe/mesquite.html' +homepage = 'https://software.sandia.gov/mesquite/' description = """Mesh-Quality Improvement Library""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'pic': True} -source_urls = ['http://software.sandia.gov/~bktidwe/'] +source_urls = ['https://software.sandia.gov/mesquite/'] sources = [SOURCELOWER_TAR_GZ] moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb index fcd9a4e176afa1e18efd18d07470d9bdf0705df6..adff82b8cccd7b4557c115a4ccc3d9f678a9e4c7 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb @@ -1,13 +1,15 @@ +easyblock = 'ConfigureMake' + name = 'Mesquite' version = '2.3.0' -homepage = 'http://software.sandia.gov/~bktidwe/mesquite.html' +homepage = 'https://software.sandia.gov/mesquite/' description = """Mesh-Quality Improvement Library""" toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'pic': True} -source_urls = ['http://software.sandia.gov/~bktidwe/'] +source_urls = ['https://software.sandia.gov/mesquite/'] sources = [SOURCELOWER_TAR_GZ] moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb index 26a922fdfd6c2449c8fb2ce3bb1e1a19562e6b97..e3afd145947a5176c821969497531ca4b87565b9 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb @@ -1,13 +1,15 @@ +easyblock = 'ConfigureMake' + name = 'Mesquite' version = '2.3.0' -homepage = 'http://software.sandia.gov/~bktidwe/mesquite.html' +homepage = 'https://software.sandia.gov/mesquite/' description = """Mesh-Quality Improvement Library""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'pic': True} -source_urls = ['http://software.sandia.gov/~bktidwe/'] +source_urls = ['https://software.sandia.gov/mesquite/'] sources = [SOURCELOWER_TAR_GZ] moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb index 3ab6fccc964e30c2e0a72bab03c6f8ee99ebae83..a43b075cea723b5580bccf5f3a82a037ec17dfab 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb index c9bcb07364ddcb07a907fbdb6e7c74c8bcc36971..3887c3f2e8db78e37fd4aef9cae31a223e30d3fb 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb index c7d1a1094e649b1803f69fcec5882869a888a2f1..aa9f2cf5ecf7737088e6855e5f11aac437cc480a 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb index a9129b8002c66784fff635494e3ba417b359003a..98f80aa50e8566c553693a912bb5c7803eaaa2d6 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..852c1e30669303caac780f1e4734b9e7c027d706 --- /dev/null +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013-2014 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'MakeCp' + +name = 'MethPipe' +version = '3.0.1' + +homepage = 'http://smithlab.usc.edu/methpipe/' +description = """The MethPipe software package is a computational pipeline for + analyzing bisulfite sequencing data (BS-seq, WGBS and RRBS).""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ["http://smithlab.usc.edu/methbase/download"] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('GSL', '1.15'), + ('zlib', '1.2.7'), +] + +opts = '"-L$EBROOTGSL/lib -lgsl -lgslcblas -L$EBROOTZLIB/lib -lz"' +buildopts = 'all LIBS=%s && make install LIBS=%s' % (opts, opts) + +files_to_copy = ["bin", "docs"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["allelicmeth", "amrfinder", "amrtester", "bsrate", "dmr", + "duplicate-remover", "hmr", "hmr_plant", "lc_approx","levels", + "merge-bsrate", "merge-methcounts", "methcounts","methdiff", + "methstates", "pmd", "rmapbs", "rmapbs-pe", "roimethstat", "to-mr"]], + 'dirs': ['docs'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2c109b355724aba5d1974479ac18cb08ff24c15f --- /dev/null +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013-2014 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'MakeCp' + +name = 'MethPipe' +version = '3.0.1' + +homepage = 'http://smithlab.usc.edu/methpipe/' +description = """The MethPipe software package is a computational pipeline for + analyzing bisulfite sequencing data (BS-seq, WGBS and RRBS).""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://smithlab.usc.edu/methbase/download"] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('GSL', '1.15'), + ('zlib', '1.2.7'), +] + +opts = '"-L$EBROOTGSL/lib -lgsl -lgslcblas -L$EBROOTZLIB/lib -lz"' +buildopts = 'all LIBS=%s && make install LIBS=%s' % (opts, opts) + +files_to_copy = ["bin", "docs"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["allelicmeth", "amrfinder", "amrtester", "bsrate", "dmr", + "duplicate-remover", "hmr", "hmr_plant", "lc_approx","levels", + "merge-bsrate", "merge-methcounts", "methcounts","methdiff", + "methstates", "pmd", "rmapbs", "rmapbs-pe", "roimethstat", "to-mr"]], + 'dirs': ['docs'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..4beaf4d721ffea94753ebab8f0b8ff3a6957068d --- /dev/null +++ b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'Modeller' +version = '9.13' + +homepage = 'http://salilab.org/modeller/' +description = """ MODELLER is used for homology or comparative modeling of protein + three-dimensional structures (1,2). The user provides an alignment of a sequence to + be modeled with known related structures and MODELLER automatically calculates + a model containing all non-hydrogen atoms.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://salilab.org/modeller/%(version)s/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.5' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +key = 'dummykey' + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb b/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb index ea8f241450b43bb9d7c58880572420e4f296b38f..33a900aecd00a29e5aacdb9a36f11e40319e160d 100644 --- a/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = ['%(namelower)s%(version)s.tar.gz'] source_urls = ['ftp://ftp.cmbi.ru.nl/pub/molgraph/molden'] -makeopts = 'CC="$CC" FC="$F90" molden' +buildopts = 'CC="$CC" FC="$F90" molden' files_to_copy = [(['molden'],'bin'), 'CopyRight', 'README', 'REGISTER'] diff --git a/easybuild/easyconfigs/m/Molekel/Molekel-5.4.0_Linux_x86_64.eb b/easybuild/easyconfigs/m/Molekel/Molekel-5.4.0-Linux_x86_64.eb similarity index 100% rename from easybuild/easyconfigs/m/Molekel/Molekel-5.4.0_Linux_x86_64.eb rename to easybuild/easyconfigs/m/Molekel/Molekel-5.4.0-Linux_x86_64.eb diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.33.3-ictce-5.5.0.eb b/easybuild/easyconfigs/m/Mothur/Mothur-1.33.3-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c22398bfb98c24089a31067a09fc938904e8925d --- /dev/null +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.33.3-ictce-5.5.0.eb @@ -0,0 +1,23 @@ +name = 'Mothur' +version = '1.33.3' + +homepage = 'http://www.mothur.org/' +description = """Mothur is a single piece of open-source, expandable software + to fill the bioinformatics needs of the microbial ecology community.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.mothur.org/w/images/6/65/'] +sources = ['%(name)s.%(version)s.zip'] + +patches = ['%(name)s-%(version)s-makefile-hardcoding.patch'] + +dependencies = [ + ('libreadline', '6.2'), + ('ncurses', '5.9'), + ('bzip2', '1.0.6'), + ('gzip', '1.6'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.33.3-makefile-hardcoding.patch b/easybuild/easyconfigs/m/Mothur/Mothur-1.33.3-makefile-hardcoding.patch new file mode 100644 index 0000000000000000000000000000000000000000..fce2677e73e7d3ea2247e62afcae70078b9b1334 --- /dev/null +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.33.3-makefile-hardcoding.patch @@ -0,0 +1,38 @@ +diff -ru Mothur.source.orig/makefile Mothur.source/makefile +--- Mothur.source.orig/makefile 2014-04-04 15:41:30.000000000 +0200 ++++ Mothur.source/makefile 2014-06-03 20:11:08.822194000 +0200 +@@ -27,7 +27,7 @@ + #CXX = g++44 + + #if you are a mac user use the following line +- TARGET_ARCH += -arch x86_64 ++ #TARGET_ARCH += -arch x86_64 + + #if you using cygwin to build Windows the following line + #CXX = x86_64-w64-mingw32-g++ +Only in Mothur.source: makefile.orig +diff -ru Mothur.source.orig/uchime_src/mk Mothur.source/uchime_src/mk +--- Mothur.source.orig/uchime_src/mk 2013-02-15 16:27:03.000000000 +0100 ++++ Mothur.source/uchime_src/mk 2014-06-03 20:11:08.830462000 +0200 +@@ -6,8 +6,7 @@ + + for CPPName in $CPPNames + do +- echo $CPPName >> /dev/tty +- g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr ++ $CXX $ENV_GCC_OPTS -c -O3 $CXXFLAGS -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr + cat tmp.stderr + cat tmp.stderr >> mk.stderr + rm -f tmp.stderr +@@ -15,9 +14,9 @@ + + LINK_OPTS= + if [ `uname -s` == Linux ] ; then +- LINK_OPTS=-static ++ LINK_OPTS=-static -Wl,--no-export-dynamic + fi +-g++ $LINK_OPTS $ENV_LINK_OPTS -g -o uchime $ObjNames >> mk.stdout 2>> tmp.stderr ++$CXX $CXXFLAGS $LINK_OPTS $ENV_LINK_OPTS -g -o uchime $ObjNames >> mk.stdout 2>> tmp.stderr + cat tmp.stderr + cat tmp.stderr >> mk.stderr + rm -f tmp.stderr diff --git a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb new file mode 100644 index 0000000000000000000000000000000000000000..39773d32948364c1623633d8be260fdf90630bf5 --- /dev/null +++ b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb @@ -0,0 +1,37 @@ +easyblock = 'CMakeMake' + +name = 'MySQL' +version = '5.6.20' +versionsuffix = '-clientonly' + +homepage = 'http://www.mysql.com/' +description = """MySQL is (as of March 2014) the world's second most widely used + open-source relational database management system (RDBMS).""" + +#http://dev.mysql.com/get/Downloads/MySQL-5.6/mysql-5.6.20.tar.gz +source_urls = ['http://dev.mysql.com/get/Downloads/MySQL-%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2014b'} + +osdependencies = [('openssl-devel', 'libssl-dev')] + +dependencies = [ + ('libevent', '2.0.21'), + ('libreadline', '6.3'), + ('zlib', '1.2.8'), +# ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons +] + +builddependencies = [ + ('CMake', '3.0.0'), +] + +configopts = "-DWITHOUT_SERVER=ON " + +sanity_check_paths = { + 'files': ['bin/mysql'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..ef981bb4df0567188d1e7ebd4b8c659652ed919f --- /dev/null +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'make' +version = '3.82' + +homepage = 'http://www.gnu.org/software/make/make.html' +description = "make-3.82: GNU version of make utility" + +# fi. http://ftp.gnu.org/gnu/make/make-3.82.tar.gz +sources = ['make-%(version)s.tar.bz2'] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sanity_check_paths = { + 'files': ['bin/make'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index 33ab4efa806edc404c7661c2c5f5c91a820583a8..e13659096ee58391accd23935e3faadfd7009d51 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'make' version = '3.82' diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index 98d8a738b637428b5c41600941a7c05996a2141f..7ab215e130a333d966f215791f38671eb850694a 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'make' version = '3.82' diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..256925f8ab3a3b480426193659e4feb482f4f730 --- /dev/null +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'make' +version = '3.82' + +homepage = 'http://www.gnu.org/software/make/make.html' +description = "make-3.82: GNU version of make utility" + +# fi. http://ftp.gnu.org/gnu/make/make-3.82.tar.gz +sources = ['make-%(version)s.tar.bz2'] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sanity_check_paths = { + 'files': ['bin/make'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb index aa4a55a563b26c49e7b62f66c1e017c24c6e1d9b..10d8f0fdb3e78fb7c10d908182beaa6ec444ea30 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb index 973833a0e5714af34ccec6f2190f24b14e2a90f7..ff1abe689361c85bb092676c405858a18d97d57a 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb index 60620af7c7d74a842ded1695c9cd1f96eda3d59e..790eefcde4e2ee9a68c3062d8a78c35813d1e879 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb index 0902707f38cd216579fc502581643f59e51d9869..94b2544e16ba273e54977ade6328541ffd6dde51 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb index 8141aa9b28e923bc2be4e0b6bfe1070bc5e3408d..c0f71c373d449bf4b96bb9e56b3f9a7e16785bcd 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb index f154bb86eaa0e6476c7c58ee1f56bf9e9635d37c..39683b811c08f77b73d659e82050830131403f15 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..873b6391a257e930f6b0d706a1cb87561bd63aea --- /dev/null +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'makedepend' +version = '1.0.4' + +homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] + +sanity_check_paths = { + 'files': ['bin/makedepend'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb index a1fe1ab4f803ffeda562819c2c152ed95ef1b04f..34e982133e2bf19e8379fcf7d7dfcdf579d60c8e 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index 23c3c9a7ce01f4883062afcc38ad9493eea05f87..ecfb57dda393197be94a9a8ac44bdcce91c71511 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 85e0db7ab2df360e6faed47eb0ed74bea8b3e54a..438ec80d0eaa64eeceeef4b4f1e7e8afd2198f79 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb index e381abf0771e344de6bfc95a9421e04e39d88efd..ec94a5a333d6b4b5a907933890d53a1630ee541e 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index de8ec9a2e5af76a1dc934c8c8ef1811a543d2a4c..f390a24559e3255f27da41a2d0f098a3a9200817 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb b/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..281574498833dcd8b8e0370b49ef6c8cd83b61ed --- /dev/null +++ b/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'mcpp' +version = '2.7.2' + +homepage = 'http://mcpp.sourceforge.net/' +description = """MCPP is a portable C/C++ preprocessor, supporting GCC, Visual C++, etc. + Its source is highly configurable and can generate executables of various specs. + It accompanies a validation suite to check preprocessor's conformance and quality exhaustively.""" + +toolchain = {'name': 'GCC', 'version': '4.7.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +sanity_check_paths = { + 'files': ["bin/mcpp"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..6c2df30046b9baffb45d453fde3aecf1ef8d9ae3 --- /dev/null +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'mdtest' +version = '1.7.1' + +homepage = 'http://sourceforge.net/projects/mdtest/' +description = """ mdtest is an MPI-coordinated metadata benchmark test that performs + open/stat/close operations on files and directories and then reports the performance.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +parallel = 1 + +buildopts = ' CC="$CC"' + +files_to_copy = [ + (['mdtest'], 'bin'), + "README", + "COPYRIGHT", +] + +sanity_check_paths = { + 'files': ["bin/mdtest"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..d5a5cb84d436991d52b80dd432426a30db5e1113 --- /dev/null +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'mdtest' +version = '1.7.1' + +homepage = 'http://sourceforge.net/projects/mdtest/' +description = """ mdtest is an MPI-coordinated metadata benchmark test that performs + open/stat/close operations on files and directories and then reports the performance.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +parallel = 1 + +buildopts = ' CC="$CC"' + +files_to_copy = [ + (['mdtest'], 'bin'), + "README", + "COPYRIGHT", +] + +sanity_check_paths = { + 'files': ["bin/mdtest"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..aaa351515085644ec98850874bf2693eff974854 --- /dev/null +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'mdtest' +version = '1.9.3' + +homepage = 'http://sourceforge.net/projects/mdtest/' +description = """ mdtest is an MPI-coordinated metadata benchmark test that performs + open/stat/close operations on files and directories and then reports the performance.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TGZ] + +dependencies = [('zlib', '1.2.8')] + +parallel = 1 + +buildopts = ' CC="$CC"' + +files_to_copy = [ + (['mdtest'], 'bin'), + (['mdtest.1'], 'man/man1'), + "README", + "RELEASE_LOG", + "scripts" +] + +sanity_check_paths = { + 'files': ["bin/mdtest"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..28fb4bd0ad69071be90cb209ca4daebe2d2360a7 --- /dev/null +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'mdtest' +version = '1.9.3' + +homepage = 'http://sourceforge.net/projects/mdtest/' +description = """ mdtest is an MPI-coordinated metadata benchmark test that performs + open/stat/close operations on files and directories and then reports the performance.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TGZ] + +dependencies = [('zlib', '1.2.8')] + +parallel = 1 + +buildopts = ' CC="$CC"' + +files_to_copy = [ + (['mdtest'], 'bin'), + (['mdtest.1'], 'man/man1'), + "README", + "RELEASE_LOG", + "scripts" +] + +sanity_check_paths = { + 'files': ["bin/mdtest"], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/motif/motif-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/motif/motif-2.2.4-goolf-1.4.10.eb index 13750addffe0dc62ade587a3971cc62883225176..6d97e3c57a21ee9c3898afc2435ee12f7bc0f138 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.2.4-goolf-1.4.10.eb @@ -38,7 +38,7 @@ builddependencies = [ ] # make has problems with utf8 -premakeopts = "LANG=C " +prebuildopts = "LANG=C " # motif ships a broken automake and libtool preconfigopts = "rm -f libtool install-sh missing depcomp config.guess config.sub && " diff --git a/easybuild/easyconfigs/m/motif/motif-2.2.4-ictce-4.1.13.eb b/easybuild/easyconfigs/m/motif/motif-2.2.4-ictce-4.1.13.eb index 0b6bd08d0c5005f27000bf71effe4fd7c1f5f36c..36d9829a6d813ad548761146bd913558f75de8ca 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.2.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.2.4-ictce-4.1.13.eb @@ -38,7 +38,7 @@ dependencies = [ ] # make has problems with utf8 -premakeopts = "LANG=C " +prebuildopts = "LANG=C " # motif ships a broken automake and libtool preconfigopts = "rm -f libtool install-sh missing depcomp config.guess config.sub && " diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb index 2acf37eefa3a1d56e946f842f3c1e1b2c14157fd..6243a59beb5a1fd7f6b7bf40d3207b3e211819d8 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'motif' version = '2.3.4' diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb index be6b38118940aec3373709cd2a3d5616dbd8c4bc..735f258dfa0374a89b898f2aad8bab2e7570b30e 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'motif' version = '2.3.4' diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..49796d51b9bf6909a1fd12859a9b0111fecb106a --- /dev/null +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'motif' +version = '2.3.4' + +homepage = 'http://motif.ics.com/' +description = """Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building + applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. + It was the standard toolkit for the Common Desktop Environment and thus for Unix.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(name)s-%(version)s-src.tgz'] +source_urls = [SOURCEFORGE_SOURCE] + +dependencies = [ + ('libtool', '2.4.2'), + ('libXt', '1.1.4'), + ('libXau', '1.0.8'), + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXdmcp', '1.1.1'), + ('libpng', '1.6.12'), + ('xbitmaps', '1.1.1'), + ('flex', '2.5.37'), + ('Bison', '2.5'), + ('freetype', '2.5.3'), + ('util-linux', '2.22.2'), + ('libjpeg-turbo', '1.3.0'), + ('bzip2', '1.0.6'), +] + +preconfigopts = "./autogen.sh && " + +# makefile is not parallel safe +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libMrm.a', 'lib/libUil.a', 'lib/libXm.a', 'bin/mwm', 'bin/uil', 'bin/xmbind'], + 'dirs': ['include/Mrm', 'include/uil', 'include/X11', 'include/Xm'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index 1314d5de3f4c6c0eed088fce5fbbabd8d803bf56..dd7cd820906e8e0a3c29ee3687cec39003a52fbb 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' @@ -29,7 +31,7 @@ source_urls = ['http://www.mpiblast.org/downloads/files/'] patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] -makeopts = 'ncbi all' +buildopts = 'ncbi all' sanity_check_paths = { 'files': ["bin/mpiblast"], diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index d6d0c9f245319159c2b6e97eba9e9718698e62b3..7996ccccb17f7944b2845e71f7684d52158681c1 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' @@ -28,7 +30,7 @@ source_urls = ['http://www.mpiblast.org/downloads/files/'] patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] -makeopts = 'ncbi all' +buildopts = 'ncbi all' sanity_check_paths = { 'files': ["bin/mpiblast"], diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index fddc16cf46e10d7576d81522ecfc03d75bc410d5..ed6214c594c1e1455086e22f7f7cb4adcdab4e6e 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' @@ -29,7 +31,7 @@ source_urls = ['http://www.mpiblast.org/downloads/files/'] patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] -makeopts = 'ncbi all' +buildopts = 'ncbi all' sanity_check_paths = { 'files': ["bin/mpiblast"], diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index 632d9933cf84433b225436084eb6911ff4851a05..61e20d40246e356d6eb54fb42fc89ef1416f540e 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' @@ -29,7 +31,7 @@ source_urls = ['http://www.mpiblast.org/downloads/files/'] patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] -makeopts = 'ncbi all' +buildopts = 'ncbi all' sanity_check_paths = { 'files': ["bin/mpiblast"], diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index a3066575f6e11a07343853b2cab31f6fa65fa40a..7a012e8c9b337c135b7c30db0b4cf3bdc8c9748a 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' @@ -31,7 +33,7 @@ source_urls = ['http://www.mpiblast.org/downloads/files/'] patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] -makeopts = 'ncbi all' +buildopts = 'ncbi all' sanity_check_paths = { 'files': ["bin/mpiblast"], diff --git a/easybuild/easyconfigs/m/multitail/multitail-6-fix_makefile.patch b/easybuild/easyconfigs/m/multitail/multitail-6-fix_makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..a02e029097aa8185f429ebd08ce0c0d7d4658878 --- /dev/null +++ b/easybuild/easyconfigs/m/multitail/multitail-6-fix_makefile.patch @@ -0,0 +1,24 @@ +# Use the settings from easybuild +# by wpoely86@gmail.com +diff -ur multitail-6.2.1.orig/Makefile multitail-6.2.1/Makefile +--- multitail-6.2.1.orig/Makefile 2014-02-16 15:06:54.000000000 +0100 ++++ multitail-6.2.1/Makefile 2015-01-23 14:02:43.704383230 +0100 +@@ -1,14 +1,14 @@ + include version + + UTF8_SUPPORT=yes +-DESTDIR=/ ++DESTDIR:=$(DESTDIR) + CONFIG_FILE=$(DESTDIR)/etc/multitail.conf + +-CC=gcc ++CC:=$(CC) + DEBUG=-g -D_FORTIFY_SOURCE=2 # -D_DEBUG # -pg # -D_DEBUG #-pg -W -pedantic # -pg #-fprofile-arcs + ifeq ($(UTF8_SUPPORT),yes) +-LDFLAGS+=-lpanelw -lncursesw -lutil -lm $(DEBUG) -rdynamic +-CFLAGS+=-funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT ++LDFLAGS:= $(LDFLAGS) -lpanelw -lncursesw -lutil -lm $(DEBUG) ++CFLAGS:= -funsigned-char -D`uname` -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT $(CFLAGS) + else + LDFLAGS+=-lpanel -lncurses -lutil -lm $(DEBUG) -rdynamic + CFLAGS+=-funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" diff --git a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e8dddb718d57579e1b1101078693da481bf450a1 --- /dev/null +++ b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'MakeCp' + +name = 'multitail' +version = '6.2.1' + +homepage = 'http://www.vanheusden.com/multitail/' +description = """MultiTail allows you to monitor logfiles and command +output in multiple windows in a terminal, colorize, filter and merge.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TGZ] +source_urls = ['http://www.vanheusden.com/multitail/'] + +patches = ['multitail-6-fix_makefile.patch'] + +files_to_copy = [ + (['multitail'], 'bin'), + (['multitail.conf'], 'etc'), +] + +dependencies = [("ncurses", "5.9")] + +prebuildopts = 'DESTDIR=%(installdir)s ' + +sanity_check_paths = { + 'files': ['bin/multitail'], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb new file mode 100644 index 0000000000000000000000000000000000000000..ca095349484e359d8f91076fdc8fb9a205ec0e31 --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb @@ -0,0 +1,20 @@ +name = 'NAMD' +version = '2.10b1' +versionsuffix = '-ibverbs' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'opt': True, 'pic': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.16'), + ('FFTW', '3.3.4'), +] + +charm_arch = "net-linux-x86_64 ibverbs" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb new file mode 100644 index 0000000000000000000000000000000000000000..8c61d5ae85813c9dc211e5978c225a3a41b6fcab --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb @@ -0,0 +1,20 @@ +name = 'NAMD' +version = '2.10b1' +versionsuffix = '-mpi' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.16'), + ('FFTW', '3.3.4'), +] + +charm_arch = 'mpi-linux-x86_64' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb new file mode 100644 index 0000000000000000000000000000000000000000..e2998dd325353f8675de7b7e3667edba33f95651 --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb @@ -0,0 +1,20 @@ +name = 'NAMD' +version = '2.9' +versionsuffix = '-ibverbs' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'gmvapich2', 'version': '1.7.12'} +toolchainopts = {'opt': True, 'pic': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('FFTW', '3.3.4'), +] + +charm_arch = "net-linux-x86_64 ibverbs" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb new file mode 100644 index 0000000000000000000000000000000000000000..9434c5a6023b01ecb826a89bd3f817391b67ba43 --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb @@ -0,0 +1,19 @@ +name = 'NAMD' +version = '2.9' +versionsuffix = '-ibverbs' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'gmvolf', 'version': '1.7.12'} +toolchainopts = {'opt': True, 'pic': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.12'), +] + +charm_arch = "net-linux-x86_64 ibverbs" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb new file mode 100644 index 0000000000000000000000000000000000000000..1bbb708c5e660a513c48098b2571fa9c3648a105 --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb @@ -0,0 +1,19 @@ +name = 'NAMD' +version = '2.9' +versionsuffix = '-ibverbs' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'pic': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.12'), +] + +charm_arch = "net-linux-x86_64 ibverbs" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb new file mode 100644 index 0000000000000000000000000000000000000000..b18bbca8a4bc9d8e1d058f7724ee95b035e919cf --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb @@ -0,0 +1,20 @@ +name = 'NAMD' +version = '2.9' +versionsuffix = '-ibverbs' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'opt': True, 'pic': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('FFTW', '3.3.4'), +] + +charm_arch = "net-linux-x86_64 ibverbs" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb new file mode 100644 index 0000000000000000000000000000000000000000..2fbdf0552929ef1cadedd580b8fa8d01398aef1e --- /dev/null +++ b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb @@ -0,0 +1,20 @@ +name = 'NAMD' +version = '2.9' +versionsuffix = '-mpi' + +homepage = 'http://www.ks.uiuc.edu/Research/namd/' +description = """NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +sources = ['NAMD_%(version)s_Source.tar.gz'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('FFTW', '3.3.4'), +] + +charm_arch = 'mpi-linux-x86_64' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index 98d751a7e5a00b94fbfda1ae09cc9e27e4e1a7a7..ce0c799863b583dfa85efea9a83d2fc4016999c2 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' @@ -17,13 +19,16 @@ homepage = 'http://nasm.sourceforge.net/' description = """NASM-2.07: General-purpose x86 assembler""" sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://sourceforge.net/projects/nasm/files', 'download'] +source_urls = [ + ('http://sourceforge.net/projects/nasm/files', 'download'), + 'http://www.nasm.us/pub/nasm/releasebuilds/%(version)s', +] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/nasm'], - 'dirs': [] - } + 'files': ['bin/nasm'], + 'dirs': [], +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index ec8d3535c17b7b72cedd2a9bd6819181f6e2da7b..d17113cb0639be7ab40d8a2f45f2e8f814b6ec19 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' @@ -17,12 +19,16 @@ homepage = 'http://nasm.sourceforge.net/' description = """NASM-2.07: General-purpose x86 assembler""" sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://sourceforge.net/projects/nasm/files', 'download'] +source_urls = [ + ('http://sourceforge.net/projects/nasm/files', 'download'), + 'http://www.nasm.us/pub/nasm/releasebuilds/%(version)s', +] + toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/nasm'], - 'dirs': [] - } + 'files': ['bin/nasm'], + 'dirs': [], +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb index f874f8675291571f07b7dcea9d8fbeb6a21e5d76..261d1e65aa9bad056693c684c7f8f22b3e207bbf 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' @@ -17,13 +19,16 @@ homepage = 'http://nasm.sourceforge.net/' description = """NASM-2.07: General-purpose x86 assembler""" sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://sourceforge.net/projects/nasm/files', 'download'] +source_urls = [ + ('http://sourceforge.net/projects/nasm/files', 'download'), + 'http://www.nasm.us/pub/nasm/releasebuilds/%(version)s', +] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/nasm'], - 'dirs': [] - } + 'files': ['bin/nasm'], + 'dirs': [], +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb index f6a342b73ae7e1ec625c3e3c595030d07791d10c..ec4bc1b519c771f48b1705e0ab7cc44228112bc0 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' @@ -17,7 +19,10 @@ homepage = 'http://nasm.sourceforge.net/' description = """NASM-2.07: General-purpose x86 assembler""" sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://sourceforge.net/projects/nasm/files', 'download'] +source_urls = [ + ('http://sourceforge.net/projects/nasm/files', 'download'), + 'http://www.nasm.us/pub/nasm/releasebuilds/%(version)s', +] toolchain = {'name': 'ictce', 'version': '4.1.13'} diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 55f1a5e40530347759e9d692b8838b90a74f221e..6c053969c2dc2c45fafd1d251677e5f5127e23ca 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' @@ -17,14 +19,17 @@ homepage = 'http://nasm.sourceforge.net/' description = """NASM-2.07: General-purpose x86 assembler""" sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://sourceforge.net/projects/nasm/files', 'download'] +source_urls = [ + ('http://sourceforge.net/projects/nasm/files', 'download'), + 'http://www.nasm.us/pub/nasm/releasebuilds/%(version)s', +] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/nasm'], - 'dirs': [] - } + 'files': ['bin/nasm'], + 'dirs': [], +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..f361a2932fc54ad54f280dc7ddffc274da7c1e0b --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.07' + +homepage = 'http://nasm.sourceforge.net/' +description = """NASM-2.07: General-purpose x86 assembler""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://sourceforge.net/projects/nasm/files', 'download'] + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..777c4695fda56a9c3bada376f69ab096cc34f1d1 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.07' + +homepage = 'http://nasm.sourceforge.net/' +description = """NASM-2.07: General-purpose x86 assembler""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [ + ('http://sourceforge.net/projects/nasm/files', 'download'), + 'http://www.nasm.us/pub/nasm/releasebuilds/%(version)s', +] + +toolchain = {'name': 'intel', 'version': '2014b'} + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0c5c529db57f0951f5db8d25ea6154c3636b5a3 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.05' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..8210b35b6688f5241ecd7cb9b6f92b662f9aa6e9 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.05' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +toolchain = {'name': 'ictce', 'version': '6.3.5'} + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..940cf3e83b2f5ae25acf4bfdb99e0fcfdadb6f09 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.05' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +toolchain = {'name': 'intel', 'version': '2014b'} + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a9ff8272379ac8f385e3939a9f022f77503e3ae8 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..e4df9a5cd4cb9c60f71743d4beec408d4523edc7 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..058a25ffb36f3964ae7281b65de24903aa554d9d --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index 8904b207ca4019cc8633ca9777465eb3e37589db..c5936a51c75235c8c76d28e187152dd88ba861eb 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'NCBI-Toolkit' version = '9.0.0' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index c4cbea377a5ed5f115f40eab8440eb55641c9a87..b889e9351603e87997ee1cc8eb4a97f31bf5d863 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'NCBI-Toolkit' version = '9.0.0' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index ee75b9ffbdd16f317fa8dca79c080541214b7670..af1e8856cf9ce236511fe2a0266b8699816fdbca 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'NCBI-Toolkit' version = '9.0.0' diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-Mult-bsse.patch b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-Mult-bsse.patch new file mode 100644 index 0000000000000000000000000000000000000000..95847a204ec605018acb5d6028fed929014ef868 --- /dev/null +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-Mult-bsse.patch @@ -0,0 +1,431 @@ +diff -ru nwchem-6.3.revision2-src.2013-10-17/src/task/task_bsse.F.orig nwchem-6.3.revision2-src.2013-10-17/src/task/task_bsse.F +--- nwchem-6.3.revision2-src.2013-10-17/src/task/task_bsse.F.orig 2013-05-18 02:39:35.000000000 +0200 ++++ nwchem-6.3.revision2-src.2013-10-17/src/task/task_bsse.F 2014-07-09 11:18:34.797959680 +0200 +@@ -21,10 +21,11 @@ + integer geom + integer atm_tot ! to check total atoms + integer qtot ! to print total charge ++ integer nopen ! to print spin multiplicity + integer i, j,l,k + integer nfield + integer nopt +- parameter (nopt = 8) ++ parameter (nopt = 9) + integer ind + c + character*80 buf +@@ -41,7 +42,7 @@ + external bsse_rtdb_load + c + data opt /'end', 'on', 'off','tidy','charge', 'input', +- & 'input_wghost', 'mon'/ ++ & 'input_wghost', 'mon', 'mult'/ + + c + c ------------------welcome------------------------ +@@ -79,7 +80,7 @@ + call inp_set_field(0) ! goto the begin of line + + c +-c:preliminaries ++c: preliminaries + c + qtot = 0 + atm_tot = 0 +@@ -97,17 +98,16 @@ + + c + +- if (.not.inp_a(field)) ++ 150 if (.not.inp_a(field)) + $ call errquit('bsse_input: failed to read field',911,INPUT_ERR ) +- + c + if (.not. inp_match(nopt, .false., field, opt, ind)) + $ goto 10 + +- goto (900, 850, 800, 700, 600, 500, 400, 300) ind ++ goto (900, 850, 800, 700, 600, 500, 400, 300, 200) ind + + c +-c: none ++c: none + c + + 10 write(LuOut,20) +@@ -120,6 +120,7 @@ + $ ' input '/ + $ ' input_wghost '/ + $ ' charge '/ ++ $ ' mult '/ + $ ' off '/ + $ ' on '/ + $ ' end '/ +@@ -128,7 +129,7 @@ + call errquit('bsse_input: unknown directive', 911,INPUT_ERR) + c + c +-c:mon ++c: mon + c + + 300 continue +@@ -139,40 +140,55 @@ + c + nfield = inp_n_field() + c +- atm_tot = atm_tot + nfield - 2 ! increase to check total atoms +-c + if (.not.inp_a(mon_name(nmon))) + $ call errquit + $ ('bsse_input: failed to read name field',911,INPUT_ERR) + c +- mon_atm(nmon) = nfield - 2 ! Number of atoms in each monomer +-c +- do i = 1, mon_atm(nmon) +- +- if (.not.inp_i( mon(nmon,i))) +- $ call errquit +- $ ('bsse_input: error reading integer field',911,INPUT_ERR) +- ++c Read the atom numbers and count the number of atoms as we go along. ++c If we read something else than an integer it might be the next ++c keyword on the line. So, leave the loop, and check if we have reached ++c the end of the line. If we are not at the end of the line goto 150 ++c to read the next keyword, otherwise goto 100 to read the next line. ++c ++ i = 0 ++ do while (inp_i(mon(nmon,i+1))) ++ i = i + 1 ++ mon_atm(nmon) = i ++ atm_tot = atm_tot + 1 + enddo ++ if (inp_cur_field().lt.nfield) goto 150 + c + go to 100 + c +-c: input_wghost ++c: mult ++c ++ 200 continue ++ if(nmon.eq.0) goto 10 ++ if (.not. inp_i(mmon(nmon) )) call errquit ++ $ ('bsse_input: failed reading monomer multiplicity', ++ $ nmon,INPUT_ERR) ++ if (mmon(nmon).eq.0) call errquit ++ $ ('bsse_input: invalid multiplicity ',mmon(nmon), ++ $ INPUT_ERR) ++ if (inp_cur_field().lt.nfield) goto 150 ++ goto 100 ++c ++c: input_wghost + c + 400 continue + c + if(nmon.eq.0) goto 10 + +- i=(nmon)*2 ++ i=(nmon)*2 + + if (.not. inp_a(input(i) )) call errquit + $ ('bsse_input: failed reading input [input]',911,INPUT_ERR) ++ if (inp_cur_field().lt.nfield) goto 150 + + go to 100 + c +- +-c: input +- ++c: input ++c + 500 continue + if(nmon.eq.0) goto 10 + +@@ -182,28 +198,30 @@ + $ call errquit + $ ('bsse_input: failed reading input [input]',911,INPUT_ERR) + c ++ if (inp_cur_field().lt.nfield) goto 150 + c +- + go to 100 + c + + 600 continue + c +- ++c: charge ++c + if(nmon.eq.0) goto 10 + c +- + if(.not. inp_f( qmon(nmon))) +- $ call errquit('bsse_input: reading monomer chage',911,INPUT_ERR) ++ $ call errquit('bsse_input: reading monomer charge',911,INPUT_ERR) + c ++ if (inp_cur_field().lt.nfield) goto 150 + + go to 100 + c +-c: tidy +-c clean database of any bsse info ++c: tidy ++c clean database of any bsse info + 700 continue + c +-c: off ++c: off ++c + if(.not. rtdb_delete(rtdb, 'bsse')) + $ call errquit('bsse_input: cannot clean database',911,RTDB_ERR) + goto 100 +@@ -230,7 +248,8 @@ + atm_tot= natoms + c + goto 100 +-c:end ++c ++c: end + c + 900 continue + +@@ -244,7 +263,7 @@ + + endif + c +-c: done ++c: done + c + 1000 continue + +@@ -306,11 +325,21 @@ + + enddo + c +- +- write(LuOut, 60) spr_name, nmon, qtot ++c ------------------------------------------------------ ++c check : unpaired electrons ++c ------------------------------------------------------ ++c ++ nopen = 0 ++ do j = 1, nmon ++ nopen = nopen + abs(mmon(j)) - 1 ++ enddo ++c ++ write(LuOut, 60) spr_name, nmon, ++ $ mod(nopen,2)+1, nopen+1, qtot + 60 format(/ + $ ' supermolecule geometry name = ', a50/ + $ ' number of monomers = ', i4/ ++ $ ' total multiplicity = ', i4,' to ',i4/ + $ ' total charge = ', i4/) + c + +@@ -367,13 +396,21 @@ + return + c + end +- subroutine bsse_param(rtdb, charge, j_mon_name, ++C> ++C> \brief Initialize monomer calculation ++C> ++C> Initialize the monomer calculation by modifying the contents of ++C> the RunTime Data Base for the current calculation. ++C> ++ subroutine bsse_param(rtdb, mult, charge, j_mon_name, + & i_input,theory) + implicit none +- integer rtdb !input +- character*(*) j_mon_name, i_input !input +- character*(*) theory !input +- double precision charge ++ integer rtdb !< [Input] The RTDB handle ++ character*(*) j_mon_name !< [Input] Monomer name ++ character*(*) i_input !< [Input] Line of input for monomer calculation ++ character*(*) theory !< [Input] The theory to apply ++ integer mult !< [Input] Monomer spin multiplicity ++ double precision charge !< [Input] Monomer charge + logical first_j + character*255 vec_dbi, vec_dbo,tmp + integer lentheo, lenname +@@ -396,6 +433,22 @@ + c + lentheo = inp_strlen(theory) + c ++c: multiplicity ++c: density methods ++ if ( theory(1:lentheo).eq.'dft' .or. ++ $ theory(1:lentheo).eq.'tddft') then ++ if (.not. rtdb_put(rtdb, 'dft:mult', mt_int, 1, mult)) ++ $ call errquit('bsse_param: rtdb_put of mult failed', ++ $ 0,RTDB_ERR ) ++c: wavefuntion methods ++ ++ elseif( theory(1:lentheo).ne.'dft' .and. ++ $ theory(1:lentheo).ne.'tddft') then ++ if (.not. rtdb_put(rtdb,'scf:nopen', MT_INT, 1, mult-1)) ++ $ call errquit('bsse_param: rtdb_put of nopen failed', ++ $ 0,RTDB_ERR) ++ endif ++c + if (charge .ne. -999.0d0) then + c + if (.not. rtdb_put(rtdb,'charge',mt_dbl,1,charge)) +@@ -507,6 +560,10 @@ + if (.not. rtdb_put( rtdb, ctmp, mt_dbl ,nmon, qmon)) + $ call errquit('bsse_rtdb_store: rtdb_put failed',0,RTDB_ERR) + c ++ ctmp = 'bsse:mmon' ++ if (.not. rtdb_put( rtdb, ctmp, mt_int ,nmon, mmon)) ++ $ call errquit('bsse_rtdb_store: rtdb_put failed',0,RTDB_ERR) ++c + ctmp= 'bsse:input' + if(.not.rtdb_cput(rtdb, ctmp, nmon*2, input)) + $ call errquit('bsse_rtdb_store: rtdb_put failed',0,RTDB_ERR) +@@ -556,6 +613,10 @@ + if (.not.rtdb_get( rtdb, ctmp, mt_dbl, nmon, qmon )) + $ call errquit('bsse_rtdb_load: rtdb_get failed',0,RTDB_ERR) + c ++ ctmp = 'bsse:mmon' ++ if (.not. rtdb_get( rtdb, ctmp, mt_int ,nmon, mmon)) ++ $ call errquit('bsse_rtdb_load: rtdb_get failed',0,RTDB_ERR) ++c + ctmp = 'bsse:input' + if(.not.rtdb_cget( rtdb, ctmp, nmon*2, input)) + $ call errquit('bsse_rtdb_load: rtdb_get failed',0,RTDB_ERR) +@@ -828,22 +889,26 @@ + + + c: multiplicity ++c: density methods ++ if ( theory(1:lentheo).eq.'dft' .or. ++ $ theory(1:lentheo).eq.'tddft') then ++ if (.not. rtdb_get(rtdb, 'dft:mult', mt_int, 1, m_spr)) ++ $ call errquit('bsse_energy: rtdb_get of mult failed', ++ $ 0,RTDB_ERR ) + c: wavefuntion methods + +- if( theory(1:lentheo).ne.'dft') then ++ elseif( theory(1:lentheo).ne.'dft' .and. ++ $ theory(1:lentheo).ne.'tddft') then + if (.not. rtdb_get(rtdb,'scf:nopen', MT_INT, 1, m_spr)) +- $ call +- $ errquit('bsse_energy: rtdb_put of nopen failed',0,RTDB_ERR) ++ $ call errquit('bsse_energy: rtdb_get of nopen failed', ++ $ 0,RTDB_ERR) + +-c: density methods +- elseif ( theory(1:lentheo).eq.'dft') then +- if (.not. rtdb_get(rtdb, 'dft:mult', mt_int, 1, m_spr)) +- $ call errquit('bsse_energy: rtdb_put failed', 0,RTDB_ERR ) + endif + + c + c: name of the original movecs +- if(theory(1:lentheo).eq.'dft') then ++ if(theory(1:lentheo).eq.'dft' .or. ++ $ theory(1:lentheo).eq.'tddft') then + vec_dbo= 'dft:output vectors' + vec_dbi= 'dft:input vectors' + elseif (theory(1:lentheo).eq.'mcscf') then +@@ -865,7 +930,7 @@ + + + c +-c:Obtain monomers energies from forzen geometries; ++c:Obtain monomers energies from frozen geometries; + c:it makes a couple jobs for each monomer (no ghost, ghost) + c + +@@ -884,7 +949,8 @@ + + endif + c +- call bsse_param(rtdb, qmon(j), j_mon_name, input(i),theory) ++ call bsse_param(rtdb, mmon(j), qmon(j), j_mon_name, input(i), ++ $ theory) + c + c:evaluate energy + if (.not. task_energy_doit(rtdb,theory, mon_energy(i))) +@@ -948,20 +1014,24 @@ + + c: multiplicity + +-c: wavefuntion methods ++c: density methods + ++ if ( theory(1:lentheo).eq.'dft' .or. ++ $ theory(1:lentheo).eq.'tddft') then + +- if( theory(1:lentheo).ne.'dft') then ++ if (.not. rtdb_put(rtdb, 'dft:mult', mt_int, 1, m_spr)) ++ $ call errquit('bsse_energy: rtdb_put of mult failed', ++ $ 0, RTDB_ERR) + +- if (.not. rtdb_put(rtdb,'scf:nopen', MT_INT, 1, m_spr)) +- $ call +- $ errquit('bsse_energy: rtdb_put of nopen failed',0, RTDB_ERR) +-c: density methods ++c: wavefuntion methods + +- elseif ( theory(1:lentheo).eq.'dft') then ++ elseif( theory(1:lentheo).ne.'dft' .and. ++ $ theory(1:lentheo).ne.'tddft') then ++ ++ if (.not. rtdb_put(rtdb,'scf:nopen', MT_INT, 1, m_spr)) ++ $ call errquit('bsse_energy: rtdb_put of nopen failed', ++ $ 0, RTDB_ERR) + +- if (.not. rtdb_put(rtdb, 'dft:mult', mt_int, 1, m_spr)) +- $ call errquit('bsse_energy: rtdb_put failed', 0, RTDB_ERR) + + endif + c +@@ -1092,18 +1162,16 @@ + c: multiplicity + c + c: wavefuntion methods +- +- + if( theory(1:lentheo).ne.'dft') then + if (.not. rtdb_get(rtdb,'scf:nopen', MT_INT, 1, m_spr)) + $ call +- $ errquit('bsse_gradient: rtdb_put of nopen failed',0,RTDB_ERR) ++ $ errquit('bsse_gradient: rtdb_get of nopen failed',0,RTDB_ERR) + c + c: density methods + elseif ( theory(1:lentheo).eq.'dft') then + if (.not. rtdb_get(rtdb, 'dft:mult', mt_int, 1, m_spr)) + $ call +- $ errquit('bsse_gradient: rtdb_put failed', 0,RTDB_ERR) ++ $ errquit('bsse_gradient: rtdb_get failed', 0,RTDB_ERR) + endif + c + c: name of the original movecs +@@ -1144,7 +1212,8 @@ + lenname = lenname + 1 + endif + c +- call bsse_param(rtdb, qmon(j), j_mon_name, input(i),theory) ++ call bsse_param(rtdb, mmon(j), qmon(j), j_mon_name, input(i), ++ $ theory) + c + c: evaluate gradient + +@@ -1494,7 +1563,8 @@ + c + c + +- call bsse_param(rtdb, qmon(j), j_mon_name, input(i),theory) ++ call bsse_param(rtdb, mmon(j), qmon(j), j_mon_name, input(i), ++ $ theory) + c + c + c +@@ -1905,4 +1975,4 @@ + c + end + +-c $Id: task_bsse.F 21176 2011-10-10 06:35:49Z d3y133 $ ++c $Id: task_bsse.F 25716 2014-06-04 19:26:44Z d3y133 $ diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..0e843ffa38f0a4d83fd26a88243bc57beea6cfef --- /dev/null +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb @@ -0,0 +1,32 @@ +name = 'NWChem' +version = '6.3.revision2' + +homepage = 'http://www.nwchem-sw.org' +description = """NWChem aims to provide its users with computational chemistry tools that are scalable both in + their ability to treat large scientific computational chemistry problems efficiently, and in their use of available + parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. + NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all + combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties + and relativity.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'i8': True} + +source_urls = [ 'http://www.nwchem-sw.org/download.php?f='] +verdate = '2013-10-17' +sources = ['Nwchem-%s-src.%s.tar.gz' % (version, verdate)] + +patches = [ + 'NWChem_fix-date.patch', + 'NWChem-6.3.revision2-Mult-bsse.patch', + 'NWChem-6.3.revision2-parallelbuild.patch', +] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s-%s' % (verdate, python, pyver) +dependencies = [(python, pyver)] + +modules = 'all python' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-parallelbuild.patch b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-parallelbuild.patch new file mode 100644 index 0000000000000000000000000000000000000000..5846179f303f1c4ac4a82b83d671866907d822b2 --- /dev/null +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-parallelbuild.patch @@ -0,0 +1,30 @@ +diff -ru src/config/makefile.h.orig src/config/makefile.h +--- src/config/makefile.h.orig 2013-10-16 01:36:46.000000000 +0200 ++++ src/config/makefile.h 2014-07-10 10:22:48.381962260 +0200 +@@ -1348,7 +1348,7 @@ + CORE_SUBDIRS_EXTRA = blas lapack + CC = gcc + RANLIB = ranlib +- MAKEFLAGS = -j 1 --no-print-directory ++ MAKEFLAGS = -j 8 --no-print-directory + INSTALL = @echo $@ is built + CPP = gcc -E -nostdinc -undef -P + FCONVERT = (/bin/cp $< /tmp/$$$$.c; \ +@@ -1714,7 +1714,7 @@ + endif + endif + DEFINES += -DEXT_INT +- MAKEFLAGS = -j 1 --no-print-directory ++ MAKEFLAGS = -j 8 --no-print-directory + _CPU = $(shell uname -m ) + ifeq ($(BLAS_LIB),) + CORE_SUBDIRS_EXTRA += blas +@@ -1823,7 +1823,7 @@ + endif # end of ia32 bit + ifeq ($(_CPU),x86_64) + # +- MAKEFLAGS = -j 2 --no-print-directory ++ MAKEFLAGS = -j 8 --no-print-directory + COPTIMIZE = -O1 + ifeq ($(NWCHEM_TARGET),CATAMOUNT) + FC=pgf90 diff --git a/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e208935ff8b7fcf216b592165eda70a4b9dfdeb2 --- /dev/null +++ b/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'Net-LibIDN' +version = '0.12' + +homepage = 'http://search.cpan.org/~thor/Net-LibIDN-0.12/' +description = """This module provides Perl bindings for GNU Libidn.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://cpan.metacpan.org/authors/id/T/TH/THOR/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('libidn', '1.29'), +] + +options = {'modulename': 'Net::LibIDN'} + +moduleclass = 'system' + diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index 4a9c13071407a78b1fda827462568522663f6fe2..07e2cab7c08dee79d0c3c6504fb5aa2c0b3ad4a0 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index 2100f6a2209f9e6451c7ca84f2c9c7ef1307e0bd..b4bf60ef3c5d2218be7d43b944569d3a520ac1c8 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb index c81c77dbef91fa9fc146229de968a41812376a75..2a997d6bdf1a0cf67ba55a21dfb6a5ca83c97e83 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index 6c325f968eb3ecc5aecb85be6fc96504fecfb2d1..1ff272d5d594898a4272ebc8d4dd962e3731c6f7 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2-bare.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb similarity index 100% rename from easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2-bare.eb rename to easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2.eb similarity index 100% rename from easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2.eb rename to easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2.eb diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb index cd59ae4ab317e7f6ecd05f254d4741f517de324e..3068c78b44596e55e60ecb5be5483fd68b29f21b 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb @@ -6,6 +6,9 @@ description = """The Ncurses (new curses) library is a free software emulation o and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" +# in relation to -no-cpp-precomp bug: https://lists.gnu.org/archive/html/bug-ncurses/2012-12/msg00001.html +patches = ['ncurses-5.9_configure_darwin.patch'] + toolchain = {'name': 'GCC', 'version': '4.8.2'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.3.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..52e0aac9ea3c614e3b263a864e2ed3826ad23033 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.3.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..946a1c53383958239960c9bb5cd2b587d04feeeb --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..78b7618284c00eea1b85b0f2cfbe07486554ba27 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..b4ea71f97f0685c284357c6709729be956b08ec8 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2f9501c9ae8a4cdab8fef461a1288387b751d442 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..9f6619baca56f6dd3813e005f73c170690c3208a --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, +and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and +function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.5.14.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..e67f480463340aeb85025cfe155c7007d32a4cad --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.5.14.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, +and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and +function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-5.2.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-5.2.0.eb index fb1f4e9935f46516ab8a7d5a296570b10d555697..ee127c7a3c35601056fd67f032ae7d9b2050208d 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-5.2.0.eb @@ -7,6 +7,7 @@ and more. It uses Terminfo format, supports pads and color and multiple highligh function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" toolchain = {'name': 'ictce', 'version': '5.2.0'} +toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-6.2.5.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..84c486d4d929b95f9216aa4feb913fb6c0b2f709 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-6.2.5.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-6.3.5.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..ab5e8538f310a9b7db8fbfc439d47f8dbb93805b --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-6.3.5.eb @@ -0,0 +1,17 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """ The Ncurses (new curses) library is a free software + emulation of curses in System V Release 4.0, and more. It uses + Terminfo format, supports pads and color and multiple highlights + and forms characters and function-key mapping, and has all the other + SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-7.1.2.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a7094da2181c35d84d55cbe5b65727abb8b8b48 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-ictce-7.1.2.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014b.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..4aface2738e4be2af300db0b78beb5078d9da889 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014b.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..867d190ac8821b748d3d97dbba140bc2846b9615 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -0,0 +1,22 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9_configure_darwin.patch b/easybuild/easyconfigs/n/ncurses/ncurses-5.9_configure_darwin.patch new file mode 100644 index 0000000000000000000000000000000000000000..cbc78d120b898add4dc0050f506cc38492bb903d --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9_configure_darwin.patch @@ -0,0 +1,11 @@ +--- ncurses-5.9.orig/configure 2014-10-25 21:11:31.000000000 +0200 ++++ ncurses-5.9/configure 2014-10-25 21:11:10.000000000 +0200 +@@ -5584,7 +5584,7 @@ + chmod +x mk_shared_lib.sh + ;; + darwin*) #(vi +- EXTRA_CFLAGS="-no-cpp-precomp" ++ #EXTRA_CFLAGS="-no-cpp-precomp" + CC_SHARED_OPTS="-dynamic" + MK_SHARED_LIB='${CC} ${CFLAGS} -dynamiclib -install_name ${libdir}/`basename $@` -compatibility_version ${ABI_VERSION} -current_version ${ABI_VERSION} -o $@' + test "$cf_cv_shlib_version" = auto && cf_cv_shlib_version=abi diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..a75fd151a4ac15b9165a88579c92f3a72784c03e --- /dev/null +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'ncview' +version = '2.1.2' + +homepage = 'http://meteora.ucsd.edu/~pierce/ncview_home_page.html' +description = """Ncview is a visual browser for netCDF format files.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'usempi': True} + +source_urls = ['ftp://cirrus.ucsd.edu/pub/ncview/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('netCDF', '4.2.1.1'), + ('HDF5', '1.8.10', '-gpfs'), + ('UDUNITS', '2.1.24'), +] + +sanity_check_paths = { + 'files': ['bin/ncview'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb index a86cd78df64b33df39821e8328414450c358d15c..b46d95de455ed7cf103dcc5b897dc5da94856310 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb index df031c2880621fd615139bb71a765151c302bab9..57f1d3e4bb87ad0c08e3f8493c1f7f8263c0f10e 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb index 7c205aa876412916405b9f29361a3487a6b7ef40..7a7c4b81bc1d579b5b25067a6a42e8654ab789e4 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-C++-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb similarity index 96% rename from easybuild/easyconfigs/n/netCDF/netCDF-C++-4.2-ictce-5.3.0.eb rename to easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb index 1f5199fe78e3daaaa89a144bbad978039aaada06..3b4f3e5332f61645e898b28a4e59051ab7ad0646 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-C++-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb index f02f2181e46569522945b077af4b66de6a1f05c4..de008bf23555d4d20f93fd960eb202fd5a1321a0 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c46c081007c38b471edb2ac05ecbbd93362e9427 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'netCDF-C++4' +version = '4.2.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/Unidata/netcdf-cxx4/archive/'] + +dependencies = [('netCDF', '4.3.2')] + +sanity_check_paths = { + 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.so'], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8cbfe5ddb1455f8d33c0106591d09829954ad4d --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb @@ -0,0 +1,17 @@ +name = 'netCDF-Fortran' +version = '4.2' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries +and machine-independent data formats that support the creation, access, and sharing of array-oriented +scientific data.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('netCDF', '4.2.1.1')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2014b.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..59ed0da09a80bc6eb812f550428a97327e6aa593 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'netCDF-Fortran' +version = '4.4.0' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('netCDF', '4.3.2')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ed31b043f1f29beaa08e1e5c0be905dd1c1de180 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb @@ -0,0 +1,17 @@ +name = 'netCDF-Fortran' +version = '4.4.0' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('netCDF', '4.3.2')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8fa0bc40a20c8c6cc7a1f2429f2a3119a417d59 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +name = 'netCDF' +version = '4.2.1.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('HDF5', '1.8.10-patch1')] + +builddependencies = [('Doxygen', '1.8.3.1')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..5e5d78307e82e1dc24b359fe54207bda48e0f909 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-5.5.0.eb @@ -0,0 +1,19 @@ +name = 'netCDF' +version = '4.2.1.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('HDF5', '1.8.10', '-gpfs')] + +builddependencies = [('Doxygen', '1.8.3.1')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-intel-2014b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa034d149822eb5571e4f90abd218b57540e679a --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'netCDF' +version = '4.2.1.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('HDF5', '1.8.10', '-gpfs')] + +builddependencies = [('Doxygen', '1.8.5')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.0_nc-config.in.cmake b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.0_nc-config.in.cmake index c97f8bf3ebc6bac6f2a217d38a45dc7804023da2..5fae32d6877c56a228a9218d60f5a7781f0c86f1 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.0_nc-config.in.cmake +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.0_nc-config.in.cmake @@ -1,295 +1,295 @@ -#! /bin/sh -# -# This forms the basis for the nc-config utility, which tells you -# various things about the netCDF installation. This code was -# contributed by netCDF user Arlindo DaSilva. Thanks Arlindo! - -prefix=@CMAKE_INSTALL_PREFIX@ -exec_prefix=@CMAKE_INSTALL_PREFIX@ -libdir=@CMAKE_INSTALL_PREFIX@/lib -includedir=@CMAKE_INSTALL_PREFIX@/include - -cc="@CMAKE_C_COMPILER@" -cflags="-I@CMAKE_INSTALL_PREFIX@/include @CMAKE_C_FLAGS@ @CMAKE_CPP_FLAGS@" -libs="-L@CMAKE_INSTALL_PREFIX@/lib -l@ALL_TLL_LIBS@" - -has_dap="@USE_DAP@" -if [ -z $has_dap ]; then - has_dap="no" -else - has_dap="yes" -fi - -has_nc2="@BUILD_V2@" - -if [ -z $has_nc2 ]; then - has_nc2="no" -else - has_nc2="yes" -fi - -has_nc4="@USE_NETCDF4@" -if [ -z $has_nc4 ]; then - has_nc4="no" -else - has_nc4="yes" -fi - -has_hdf4="@USE_HDF4@" -if [ -z $has_hdf4 ]; then - has_hdf4="no" -else - has_hdf4="yes" -fi - -has_pnetcdf="@USE_PNETCDF@" -if [ -z $has_pnetcdf ]; then - has_pnetcdf="no" -else - has_pnetcdf="yes" -fi - -has_hdf5="@USE_HDF5@" -if [ -z $has_hdf5 ]; then - has_hdf5="no" -else - has_hdf5="yes" -fi - -has_szlib="@USE_SZLIB@" -if [ -z $has_szlib ]; then - has_szlib="no" -else - has_szlib="yes" -fi - - -version="@PACKAGE@ @VERSION@" - -has_f90="no" -if type -p nf-config > /dev/null 2>&1; then - fc=`nf-config --fc` - fflags=`nf-config --fflags` - flibs=`nf-config --flibs` - has_f90=`nf-config --has-f90` -fi - -has_cxx="no" -has_cxx4="no" -if type -p ncxx4-config > /dev/null 2>&1; then - cxx4=`ncxx4-config --cxx` - has_cxx4="yes" -elif type -p ncxx-config > /dev/null 2>&1; then - cxx=`ncxx-config --cxx` - has_cxx="yes" -fi - -usage() -{ - cat < /dev/null 2>&1; then - cat < /dev/null 2>&1; then - cat < /dev/null 2>&1; then - cat < $cc" - echo " --cflags -> $cflags" - echo " --libs -> $libs" - echo - echo " --has-c++ -> $has_cxx" - echo " --cxx -> $cxx" - echo " --has-c++4 -> $has_cxx4" - echo " --cxx4 -> $cxx4" - echo - echo " --fc -> $fc" - echo " --fflags -> $fflags" - echo " --flibs -> $flibs" - echo " --has-f90 -> $has_f90" - echo - echo " --has-dap -> $has_dap" - echo " --has-nc2 -> $has_nc2" - echo " --has-nc4 -> $has_nc4" - echo " --has-hdf5 -> $has_hdf5" - echo " --has-hdf4 -> $has_hdf4" - echo " --has-pnetcdf-> $has_pnetcdf" - echo " --has-szlib -> $has_szlib" - echo - echo " --prefix -> $prefix" - echo " --includedir-> $includedir" - echo " --version -> $version" - echo -} - -if test $# -eq 0; then - usage 1 -fi - -while test $# -gt 0; do - case "$1" in - # this deals with options in the style - # --option=value and extracts the value part - # [not currently used] - -*=*) value=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;; - *) value= ;; - esac - - case "$1" in - - --help) - usage 0 - ;; - - --all) - all - ;; - - --cc) - echo $cc - ;; - - --cflags) - echo $cflags - ;; - - --has-dap) - echo $has_dap - ;; - - --has-nc2) - echo $has_nc2 - ;; - - --has-nc4) - echo $has_nc4 - ;; - - --has-hdf5) - echo $has_hdf5 - ;; - - --has-hdf4) - echo $has_hdf4 - ;; - - --has-pnetcdf) - echo $has_pnetcdf - ;; - - --has-szlib) - echo $has_szlib - ;; - - --libs) - echo $libs - ;; - - --prefix) - echo "${prefix}" - ;; - - --includedir) - echo "${includedir}" - ;; - - --version) - echo $version - ;; - - --has-c++) - echo $has_cxx - ;; - - --cxx) - echo $cxx - ;; - - --has-c++4) - echo $has_cxx4 - ;; - - --cxx4) - echo $cxx4 - ;; - -# --cxxflags) -# echo $cxxflags -# ;; -# -# --cxxlibs) -# echo $cxxlibs -# ;; - - --fc) - echo $fc - ;; - - --fflags) - echo $fflags - ;; - - --flibs) - echo $flibs - ;; - - --has-f90) - echo $has_f90 - ;; - - *) - echo "unknown option: $1" - usage - exit 1 - ;; - esac - shift -done - -exit 0 +#! /bin/sh +# +# This forms the basis for the nc-config utility, which tells you +# various things about the netCDF installation. This code was +# contributed by netCDF user Arlindo DaSilva. Thanks Arlindo! + +prefix=@CMAKE_INSTALL_PREFIX@ +exec_prefix=@CMAKE_INSTALL_PREFIX@ +libdir=@CMAKE_INSTALL_PREFIX@/lib +includedir=@CMAKE_INSTALL_PREFIX@/include + +cc="@CMAKE_C_COMPILER@" +cflags="-I@CMAKE_INSTALL_PREFIX@/include @CMAKE_C_FLAGS@ @CMAKE_CPP_FLAGS@" +libs="-L@CMAKE_INSTALL_PREFIX@/lib -l@ALL_TLL_LIBS@" + +has_dap="@USE_DAP@" +if [ -z $has_dap ]; then + has_dap="no" +else + has_dap="yes" +fi + +has_nc2="@BUILD_V2@" + +if [ -z $has_nc2 ]; then + has_nc2="no" +else + has_nc2="yes" +fi + +has_nc4="@USE_NETCDF4@" +if [ -z $has_nc4 ]; then + has_nc4="no" +else + has_nc4="yes" +fi + +has_hdf4="@USE_HDF4@" +if [ -z $has_hdf4 ]; then + has_hdf4="no" +else + has_hdf4="yes" +fi + +has_pnetcdf="@USE_PNETCDF@" +if [ -z $has_pnetcdf ]; then + has_pnetcdf="no" +else + has_pnetcdf="yes" +fi + +has_hdf5="@USE_HDF5@" +if [ -z $has_hdf5 ]; then + has_hdf5="no" +else + has_hdf5="yes" +fi + +has_szlib="@USE_SZLIB@" +if [ -z $has_szlib ]; then + has_szlib="no" +else + has_szlib="yes" +fi + + +version="@PACKAGE@ @VERSION@" + +has_f90="no" +if type -p nf-config > /dev/null 2>&1; then + fc=`nf-config --fc` + fflags=`nf-config --fflags` + flibs=`nf-config --flibs` + has_f90=`nf-config --has-f90` +fi + +has_cxx="no" +has_cxx4="no" +if type -p ncxx4-config > /dev/null 2>&1; then + cxx4=`ncxx4-config --cxx` + has_cxx4="yes" +elif type -p ncxx-config > /dev/null 2>&1; then + cxx=`ncxx-config --cxx` + has_cxx="yes" +fi + +usage() +{ + cat < /dev/null 2>&1; then + cat < /dev/null 2>&1; then + cat < /dev/null 2>&1; then + cat < $cc" + echo " --cflags -> $cflags" + echo " --libs -> $libs" + echo + echo " --has-c++ -> $has_cxx" + echo " --cxx -> $cxx" + echo " --has-c++4 -> $has_cxx4" + echo " --cxx4 -> $cxx4" + echo + echo " --fc -> $fc" + echo " --fflags -> $fflags" + echo " --flibs -> $flibs" + echo " --has-f90 -> $has_f90" + echo + echo " --has-dap -> $has_dap" + echo " --has-nc2 -> $has_nc2" + echo " --has-nc4 -> $has_nc4" + echo " --has-hdf5 -> $has_hdf5" + echo " --has-hdf4 -> $has_hdf4" + echo " --has-pnetcdf-> $has_pnetcdf" + echo " --has-szlib -> $has_szlib" + echo + echo " --prefix -> $prefix" + echo " --includedir-> $includedir" + echo " --version -> $version" + echo +} + +if test $# -eq 0; then + usage 1 +fi + +while test $# -gt 0; do + case "$1" in + # this deals with options in the style + # --option=value and extracts the value part + # [not currently used] + -*=*) value=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;; + *) value= ;; + esac + + case "$1" in + + --help) + usage 0 + ;; + + --all) + all + ;; + + --cc) + echo $cc + ;; + + --cflags) + echo $cflags + ;; + + --has-dap) + echo $has_dap + ;; + + --has-nc2) + echo $has_nc2 + ;; + + --has-nc4) + echo $has_nc4 + ;; + + --has-hdf5) + echo $has_hdf5 + ;; + + --has-hdf4) + echo $has_hdf4 + ;; + + --has-pnetcdf) + echo $has_pnetcdf + ;; + + --has-szlib) + echo $has_szlib + ;; + + --libs) + echo $libs + ;; + + --prefix) + echo "${prefix}" + ;; + + --includedir) + echo "${includedir}" + ;; + + --version) + echo $version + ;; + + --has-c++) + echo $has_cxx + ;; + + --cxx) + echo $cxx + ;; + + --has-c++4) + echo $has_cxx4 + ;; + + --cxx4) + echo $cxx4 + ;; + +# --cxxflags) +# echo $cxxflags +# ;; +# +# --cxxlibs) +# echo $cxxlibs +# ;; + + --fc) + echo $fc + ;; + + --fflags) + echo $fflags + ;; + + --flibs) + echo $flibs + ;; + + --has-f90) + echo $has_f90 + ;; + + *) + echo "unknown option: $1" + usage + exit 1 + ;; + esac + shift +done + +exit 0 diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2014b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ab91b52fe086690d652f385c7e066e631199b6a --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2014b.eb @@ -0,0 +1,31 @@ +name = 'netCDF' +version = '4.3.2' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +patches = ['netCDF-4.3.2-with-HDF-1.8.13.patch'] + +dependencies = [('HDF5', '1.8.13')] + +builddependencies = [ + ('CMake', '3.0.0'), + ('Doxygen', '1.8.7'), + ('cURL', '7.37.1'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.so -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=ON", + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.so -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=OFF", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bb04604455283e68b4441597d9f019c8a77b7dd4 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb @@ -0,0 +1,31 @@ +name = 'netCDF' +version = '4.3.2' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +patches = ['netCDF-4.3.2-with-HDF-1.8.13.patch'] + +dependencies = [('HDF5', '1.8.13')] + +builddependencies = [ + ('CMake', '3.0.0'), + ('Doxygen', '1.8.7'), + ('cURL', '7.37.1'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.so -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=ON", + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.so -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=OFF", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-with-HDF-1.8.13.patch b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-with-HDF-1.8.13.patch new file mode 100644 index 0000000000000000000000000000000000000000..783a5b06e99177916e874fe847483a76800a47d5 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-with-HDF-1.8.13.patch @@ -0,0 +1,145 @@ +From 435d8a03ed28bb5ad63aff12cbc6ab91531b6bc8 Mon Sep 17 00:00:00 2001 +From: Quincey Koziol +Date: Wed, 7 May 2014 08:45:15 -0500 +Subject: [PATCH] Account for the HDF5 library not having the MPI-POSIX VFD + configured in. + +--- + RELEASE_NOTES.md | 2 ++ + libsrc4/nc4file.c | 40 ++++++++++++++++++++++++++++++++++++++++ + nc_test4/tst_nc4perf.c | 5 +++++ + nc_test4/tst_parallel3.c | 5 +++++ + 4 files changed, 52 insertions(+) + +diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md +index 27f228c..1a69d17 100644 +--- a/RELEASE_NOTES.md ++++ b/RELEASE_NOTES.md +@@ -9,6 +9,8 @@ This file contains a high-level description of this package's evolution. Release + + ### 4.3.3-rc1 Released TBD + ++* When the NC_MPIPOSIX flag is given for parallel I/O access and the HDF5 library does not have the MPI-POSIX VFD configured in, the NC_MPIPOSIX flag is transparently aliased to the NC_MPIIO flag within the netCDF-4 library. ++ + ## 4.3.2 Released 2014-04-23 + + * As part of an ongoing project, the Doxygen-generated netcdf documentation has been reorganized. The goal is to make the documentation easier to parse, and to eliminate redundant material. This project is ongoing. +diff --git a/libsrc4/nc4file.c b/libsrc4/nc4file.c +index ec3bb0c..5c957be 100644 +--- a/libsrc4/nc4file.c ++++ b/libsrc4/nc4file.c +@@ -308,12 +308,21 @@ nc4_create_file(const char *path, int cmode, MPI_Comm comm, MPI_Info info, + if (H5Pset_fapl_mpio(fapl_id, comm, info) < 0) + BAIL(NC_EPARINIT); + } ++#ifdef USE_PARALLEL_POSIX + else /* MPI/POSIX */ + { + LOG((4, "creating parallel file with MPI/posix")); + if (H5Pset_fapl_mpiposix(fapl_id, comm, 0) < 0) + BAIL(NC_EPARINIT); + } ++#else /* USE_PARALLEL_POSIX */ ++ /* Should not happen! Code in NC4_create/NC4_open should alias the ++ * NC_MPIPOSIX flag to NC_MPIIO, if the MPI-POSIX VFD is not ++ * available in HDF5. -QAK ++ */ ++ else /* MPI/POSIX */ ++ BAIL(NC_EPARINIT); ++#endif /* USE_PARALLEL_POSIX */ + + /* Keep copies of the MPI Comm & Info objects */ + if (MPI_SUCCESS != MPI_Comm_dup(comm, &nc4_info->comm)) +@@ -465,6 +474,17 @@ NC4_create(const char* path, int cmode, size_t initialsz, int basepe, + ) + return NC_EINVAL; + ++#ifndef USE_PARALLEL_POSIX ++/* If the HDF5 library has been compiled without the MPI-POSIX VFD, alias ++ * the NC_MPIPOSIX flag to NC_MPIIO. -QAK ++ */ ++ if(cmode & NC_MPIPOSIX) ++ { ++ cmode &= ~NC_MPIPOSIX; ++ cmode |= NC_MPIIO; ++ } ++#endif /* USE_PARALLEL_POSIX */ ++ + cmode |= NC_NETCDF4; + + /* Apply default create format. */ +@@ -2168,12 +2188,21 @@ nc4_open_file(const char *path, int mode, MPI_Comm comm, + if (H5Pset_fapl_mpio(fapl_id, comm, info) < 0) + BAIL(NC_EPARINIT); + } ++#ifdef USE_PARALLEL_POSIX + else /* MPI/POSIX */ + { + LOG((4, "opening parallel file with MPI/posix")); + if (H5Pset_fapl_mpiposix(fapl_id, comm, 0) < 0) + BAIL(NC_EPARINIT); + } ++#else /* USE_PARALLEL_POSIX */ ++ /* Should not happen! Code in NC4_create/NC4_open should alias the ++ * NC_MPIPOSIX flag to NC_MPIIO, if the MPI-POSIX VFD is not ++ * available in HDF5. -QAK ++ */ ++ else /* MPI/POSIX */ ++ BAIL(NC_EPARINIT); ++#endif /* USE_PARALLEL_POSIX */ + + /* Keep copies of the MPI Comm & Info objects */ + if (MPI_SUCCESS != MPI_Comm_dup(comm, &nc4_info->comm)) +@@ -2640,6 +2669,17 @@ NC4_open(const char *path, int mode, int basepe, size_t *chunksizehintp, + (mode & NC_MPIIO && mode & NC_MPIPOSIX)) + return NC_EINVAL; + ++#ifndef USE_PARALLEL_POSIX ++/* If the HDF5 library has been compiled without the MPI-POSIX VFD, alias ++ * the NC_MPIPOSIX flag to NC_MPIIO. -QAK ++ */ ++ if(mode & NC_MPIPOSIX) ++ { ++ mode &= ~NC_MPIPOSIX; ++ mode |= NC_MPIIO; ++ } ++#endif /* USE_PARALLEL_POSIX */ ++ + + /* Depending on the type of file, open it. */ + +diff --git a/nc_test4/tst_nc4perf.c b/nc_test4/tst_nc4perf.c +index 47af70e..3528b82 100644 +--- a/nc_test4/tst_nc4perf.c ++++ b/nc_test4/tst_nc4perf.c +@@ -244,6 +244,11 @@ int test_pio_4d(size_t cache_size, int facc_type, int access_flag, MPI_Comm comm + return 0; + } + ++/* Note: When the MPI-POSIX VFD is not compiled in to HDF5, the NC_MPIPOSIX ++ * flag will be aliased to the NC_MPIIO flag within the library, and ++ * therefore this test will exercise the aliasing, with the MPI-IO VFD, ++ * under that configuration. -QAK ++ */ + #define NUM_MODES 2 + #define NUM_FACC 2 + #define NUM_CHUNK_COMBOS_2D 3 +diff --git a/nc_test4/tst_parallel3.c b/nc_test4/tst_parallel3.c +index 27f9c98..9fa534f 100644 +--- a/nc_test4/tst_parallel3.c ++++ b/nc_test4/tst_parallel3.c +@@ -129,6 +129,11 @@ int main(int argc, char **argv) + if (mpi_rank == 0) + SUMMARIZE_ERR; + ++/* Note: When the MPI-POSIX VFD is not compiled in to HDF5, the NC_MPIPOSIX ++ * flag will be aliased to the NC_MPIIO flag within the library, and ++ * therefore this test will exercise the aliasing, with the MPI-IO VFD, ++ * under that configuration. -QAK ++ */ + if (mpi_rank == 0) + printf("*** Testing parallel IO for raw-data with MPIPOSIX-IO (driver)..."); + facc_type = NC_NETCDF4|NC_MPIPOSIX; +-- +2.0.3 + diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..172dead842adbe8c9e9db8a0f046c54b43ec95b1 --- /dev/null +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,25 @@ +easyblock = 'PythonPackage' + +name = 'netaddr' +version = '0.7.10' + +homepage = 'https://pypi.python.org/pypi/netaddr' +description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network addresses""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['https://pypi.python.org/packages/source/n/netaddr/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.6' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), +] + +options = {'modulename': 'netaddr'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..7994c5fb6eaec57e428028d8adc4716afaefca6a --- /dev/null +++ b/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'netifaces' +version = '0.8' + +homepage = 'https://pypi.python.org/pypi/netifaces' +description = """netifaces provides a (hopefully portable-ish) way for Python + programmers to get access to a list of the network interfaces on the local + machine, and to obtain the addresses of those network interfaces.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://alastairs-place.net/projects/netifaces/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.6' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), +] + +options = {'modulename': 'netifaces'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb b/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..025be1d81d77ad937026294b7c49cbca007406f3 --- /dev/null +++ b/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'netloc' +version = "0.5" + +homepage = 'http://www.open-mpi.org/software/netloc' +description = """The Portable Network Locality (netloc) software package provides + network topology discovery tools, and an abstract representation of those networks + topologies for a range of network types and configurations. + It is provided as a companion to the Portable Hardware Locality (hwloc) package.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +source_urls = [homepage + '/v%(version_major_minor)s/downloads'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('hwloc', '1.9'), + ('Jansson', '2.6'), +] + +configopts = '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--with-jansson=$EBROOTJANSSON ' # jansson support + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/netloc/netloc-0.5beta-gcccuda-2.6.10.eb b/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb similarity index 89% rename from easybuild/easyconfigs/n/netloc/netloc-0.5beta-gcccuda-2.6.10.eb rename to easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb index b8c85aae376592735b342364646991c16c6f9854..6b5126f478bfa0dc7ce0abcba806d44830551626 100644 --- a/easybuild/easyconfigs/n/netloc/netloc-0.5beta-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb @@ -1,6 +1,7 @@ +easyblock = 'ConfigureMake' + name = 'netloc' version = "0.5" -versionsuffix = "beta" homepage = 'http://www.open-mpi.org/software/netloc' description = """The Portable Network Locality (netloc) software package provides @@ -19,7 +20,7 @@ configopts = '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--with-jansson=$EBROOTJANSSON ' # jansson support # fi. http://www.open-mpi.org/software/netloc/v0.5/downloads/netloc-0.5.tar.gz -source_urls = [ homepage + '/v%(version_major_minor)s/downloads'] +source_urls = [homepage + '/v%(version_major_minor)s/downloads'] sources = [SOURCE_TAR_GZ] moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb index 37619762620c719caca7e1e3c0cc57b9d32f6373..03cdd193de835b7aa2d23f32ed2cafaa5b62b402 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'nettle' version = '2.6' diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb index af8957541dfe1e8e4943ab7fc48815da5cfb9d4a..fbf0448f8d2f4adf00ebde3a5597b91e40b9caa5 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'nettle' version = '2.6' diff --git a/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb index 9c91472a53dbe7e163b90ebce5fa11fa1b06689e..51c10e822daa66a50fc15f0225b991fb786ee3fe 100644 --- a/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'nodejs' version = '0.10.24' diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb index d014d23c565eacad0729e6169100bdfd4b847316..174f9bf7e2e71137c4e7f2186120e619904dfc71 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'ns' version = '2.35' diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb b/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb index e98907059635a159e094969b421553215c80eaa4..057d7763d549f1ea77b376e33aea91a6879a8771 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'ns' version = '2.35' diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb b/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb index cf88a55964c607d0c9c4e50dcef5205dda7bb250..ded8fdd51cbc55db0025193a11f9947c1773e97a 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'ns' version = '2.35' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..e56d4ba751895b72c1ab0999c9eb2451444e25f3 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.10' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. + It does this by supplying a NUMA memory policy to the operating system before running your program. + The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +checksums = ['682c38305b2596967881f3d77bc3fc9c'] + +builddependencies = [ + ('Automake', '1.15'), + ('libtool', '2.4.5'), +] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..8629235333c962563b80da159ccb711567b69433 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.10' + +checksums = ['682c38305b2596967881f3d77bc3fc9c'] + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. + It does this by supplying a NUMA memory policy to the operating system before running your program. + The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('Automake', '1.15'), + ('libtool', '2.4.2'), +] + +preconfigopts = './autogen.sh && ' + + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb index 62cfc794e1697a2da7f293c0ca6af309938e121e..dbb1640bc1e95a52038124672a109739d4a32524 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb index 1fdbc49464c038d05e83a6c80b3831d36b9508be..9dab9a78e3353b9fdbca857a24a161a3395783b5 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb index 67c84c7319d0381381d4ec3f93aab929cc00e472..38e2472e6b600d62380ba8c3816aabdb3bc66034 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb index 8138adc156a13fef98a7b04624ab914f4b7fd0a4..8d379ac5acdacf1449e5b3b2214f267156d3c39d 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..4b76914247c8bd7d2748395d023de8cd86d05965 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.9' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ["ftp://oss.sgi.com/www/projects/libnuma/download/"] + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +skipsteps = ['configure'] +installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb b/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb index 9496f6917421d3059e78978f0e88c415e23b3ca4..539e278a55796051e06244ac07502a6fe117b527 100644 --- a/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'o2scl' version = '0.913' diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index d660b5e167978e500e1f9e7455c64e1e3b8c6944..e3c5f86d83cc46fafa4f1b7e4124ad15229e5384 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = "OCaml" version = "4.01.0" @@ -26,7 +28,7 @@ builddependencies = [('Autoconf', '2.69')] dependencies = [('ncurses', '5.9')] prefix_opt = "-prefix " -makeopts = "world.opt" +buildopts = "world.opt" # parallel build tends to break parallel = 1 diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb index f2754f6da90b240fab133a253114ea6a641ca20d..0361dfc86a352e3e26b71612ff5f55d667347247 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OPARI2" version = "1.0.7" diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb index 10937cf2276284c24056d49dc9dd5c837043562f..45442d42791d35b569f9bfa459a4bb84d115cb3a 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OPARI2" version = "1.1.1" diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb new file mode 100644 index 0000000000000000000000000000000000000000..7942dc6b144cb757d386dcd0cd405bec2193c374 --- /dev/null +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb @@ -0,0 +1,32 @@ +easyblock = "PackedBinary" + +name = "ORCA" +version = '3_0_2-linux_x86-64' + +homepage = 'http://cec.mpg.de/forum/' +description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry + with specific emphasis on spectroscopic properties of open-shell molecules. + It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- + and multireference correlated ab initio methods. + It can also treat environmental and relativistic effects.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] + +dependencies = [('OpenMPI', '1.8.1', '-GCC-4.8.3')] + +sanity_check_paths = { + 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + \ + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ + ['orca', 'otool_cosmo'], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb index 23a2067ba36b720c41edcff0699f704f39d0ad6c..e12b8e7289e0a1905346ed5eb5d1ea29d9d1f32f 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OTF" version = "1.12.4" diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb index 0d0f9bbf97a16adf84542f9db04e42b04b000273..3d6eb22e24d5f2d424ef80840e030fc070cc27e9 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OTF" version = "1.12.4" diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb index 2811ee8a4eb577d219f81b52ddaabfd7cf313f9b..bc720f2ad434687014584ce4e4e7e8a28b6fab6f 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Fotis Georgatos +# Authors:: Andreas Panteli , Fotis Georgatos # License:: MIT/GPL # ## @@ -31,7 +31,7 @@ source_urls = [ ] # listed make targets exclude 'doc' on purpose -makeopts = ['VELVET_DIR=../velvet_%s cleanobj velvet oases' % velvetver] +buildopts = ['VELVET_DIR=../velvet_%s cleanobj velvet oases' % velvetver] files_to_copy = [(["oases"],'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb index 4a3b4fac43724870598fd9b822b95f4d33894145..6954627e469812ecc641eb7ab12abdd5ec1b851e 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Fotis Georgatos +# Authors:: Andreas Panteli , Fotis Georgatos # License:: MIT/GPL # ## @@ -31,7 +31,7 @@ source_urls = [ ] # listed make targets exclude 'doc' on purpose -makeopts = ['VELVET_DIR=../velvet_%s cleanobj velvet oases' % velvetver] +buildopts = ['VELVET_DIR=../velvet_%s cleanobj velvet oases' % velvetver] files_to_copy = [(["oases"],'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..97ff1d323e330e13a221afd5cb6faa5007dbf5ec --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb @@ -0,0 +1,52 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.12' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c678bbcc6e2e4d2e735d898dd9315f6ad50ae4e5 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb @@ -0,0 +1,52 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.13' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1291a991d11261a1ef9ad8955479d370c6dea2c0 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb @@ -0,0 +1,51 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.13' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb index 3d70563ce763702444a0b3102fd055612790ca23..0f0ad8e2269926f1c93dc863c0019d740a5c5c94 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb index a34682d998b1cffa88a355006c3d78ed8a0873af..01d8ea4334ebe2df571f5e4ff952e2281f6cb5a5 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb index 5d51f5f66c3f887fa922ad084a7ee8cc5513b7fe..7782701cd46ec605ed0da000094b32813a561529 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -33,7 +35,7 @@ patches = [ ] skipsteps = ['configure'] -makeopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77"' installopts = "PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -42,7 +44,7 @@ installopts = "PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb index f7fcbb964f6ecf7fe55f11bcfd9709c63f570745..578e937455cb020be346502cb1495c58836d834a 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb similarity index 86% rename from easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb rename to easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb index 34e641ad21f9b4549f8d32b759cb780c7b575125..2f4a7d5c4f6a4919ecc1eebb7a029f24753601b9 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -7,7 +9,7 @@ versionsuffix = '-LAPACK-%s' % lapackver homepage = 'http://xianyi.github.com/OpenBLAS/' description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} lapack_src = 'lapack-%s.tgz' % lapackver large_src = 'large.tgz' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb index 70c17c320e8aaab26da8c82ff75cc00a4b8f7237..4153c047a37bde26e8c5168d2640acad66bdef34 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb index 7689f17f2ec1ac45ebe23cb2ec24f10502771498..8cedf904c524c12e76a817d6836c0fbae67c20bf 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb index 500a1a45016b0dc8f20b16023bc5f8b8cecfc6a1..11d637fd23be1617ad7b4053a2fbda5a38ec3b90 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb index ada05e324ea3747576b1903d86931065e93827d0..bd9785f7ccfd21cf02a4c3c5c86ec1d31218c930 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..26e470d952a58157906857d6ae2c05fb4a586899 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb @@ -0,0 +1,53 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.6' + +lapackver = '3.4.2' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'gompi', 'version': '1.4.10-no-OFED'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + 'OpenBLAS-%s_Makefile-LAPACK-sources.patch' % version, + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +threading = 'USE_THREAD=1' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +installopts = threading + " PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb index cf3256ea5a8f36ff74d1e57304e3b9871a10cde2..16af9a124980e5eb3aaebf8dfcb5f1da9a5292fa 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c183debe56adf5d6bd726e9152ab865b81f2de45 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb @@ -0,0 +1,52 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.8' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'gompi', 'version': '1.5.14'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +threading = 'USE_THREAD=1' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +installopts = threading + " PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..9e6ecd2ba62ac8b9b673024535088275dba5fde9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb @@ -0,0 +1,52 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.8' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'gompi', 'version': '1.5.14-no-OFED'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +threading = 'USE_THREAD=1' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +installopts = threading + " PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb index 005cd8534091df33725a870e80c1b829f55b6db3..ba2f665b5bf451880d43b98d6dfa88868829060a 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' @@ -34,7 +36,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -43,7 +45,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb index 59919ca91acc08ea7a4dd6eae3b435dd57aa0fbc..3cf7d536373256a7343a9c077d51f5759a7589a2 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' @@ -35,7 +37,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -44,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb index 15f2df5280bb57839d2ee7d6e29480da5af34fb6..dbc806f461f1d6467680cefb0bcc3418b08cd23b 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' @@ -34,7 +36,7 @@ patches = [ skipsteps = ['configure'] threading = 'USE_THREAD=1' -makeopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' installopts = threading + " PREFIX=%(installdir)s" # extensive testing can be enabled by uncommenting the line below @@ -43,7 +45,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0e54d09956161054b0cb278b9c2d72b29996b95 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb @@ -0,0 +1,51 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.9' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenBabel/OpenBabel-2.3.2-ictce-7.1.2-Python-2.7.8.eb b/easybuild/easyconfigs/o/OpenBabel/OpenBabel-2.3.2-ictce-7.1.2-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d30d51d9222285931b6ad1fe39563624b28063b --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBabel/OpenBabel-2.3.2-ictce-7.1.2-Python-2.7.8.eb @@ -0,0 +1,39 @@ +name = 'OpenBabel' +version = '2.3.2' + +homepage = 'http://openbabel.org' +description = """Open Babel is a chemical toolbox designed to speak the many + languages of chemical data. It's an open, collaborative project allowing anyone + to search, convert, analyze, or store data from molecular modeling, chemistry, + solid-state materials, biochemistry, or related areas.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'OpenBabel-%(version)s-use-xHost.patch', + 'OpenBabel-%(version)s-fix-link-path-tests.patch', + 'OpenBabel-%(version)s-ignore-failed-test.patch', +] + +builddependencies = [('CMake', '2.8.12')] + +python = "Python" +pythonversion = '2.7.8' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('zlib', '1.2.8'), + ('libxml2', '2.9.1'), + ('Eigen', '3.2.2'), +] + +runtest = 'test' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/o/OpenBabel/OpenBabel-2.3.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/o/OpenBabel/OpenBabel-2.3.2-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..cb8522cddd880d5fde7abed3ffe18ace2ee4e314 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBabel/OpenBabel-2.3.2-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,39 @@ +name = 'OpenBabel' +version = '2.3.2' + +homepage = 'http://openbabel.org' +description = """Open Babel is a chemical toolbox designed to speak the many + languages of chemical data. It's an open, collaborative project allowing anyone + to search, convert, analyze, or store data from molecular modeling, chemistry, + solid-state materials, biochemistry, or related areas.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'OpenBabel-%(version)s-use-xHost.patch', + 'OpenBabel-%(version)s-fix-link-path-tests.patch', + 'OpenBabel-%(version)s-ignore-failed-test.patch', +] + +builddependencies = [('CMake', '2.8.12')] + +python = "Python" +pythonversion = '2.7.8' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('zlib', '1.2.8'), + ('libxml2', '2.9.1'), + ('Eigen', '3.2.2'), +] + +runtest = 'test' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3da865854a0f1ac72aee32436be2a577a96b570b --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb @@ -0,0 +1,76 @@ +easyblock = 'CMakeMake' + +name = 'OpenCV' +version = '2.4.9' + +homepage = 'http://opencv.org/' +description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision + and machine learning software library. OpenCV was built to provide + a common infrastructure for computer vision applications and to accelerate + the use of machine perception in the commercial products.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'optarch': True} + +sources = [SOURCELOWER_ZIP] +source_urls = [('http://sourceforge.net/projects/opencvlibrary/files/opencv-unix/%(version)s', 'download')] + +patches = ['OpenCV-%(version)s_with_IPP.patch'] + +osdependencies = ['gtk2-devel'] + +builddependencies = [ + ('CMake', '3.0.0'), +] + +python = 'Python' +pythonver = '2.7.8' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +java = 'Java' +javaver = '1.7.0_60' + +dependencies = [ + (python, pythonver), + ('zlib', '1.2.8'), + ('ffmpeg', '2.4'), + ('libjpeg-turbo', '1.3.1'), + ('libpng', '1.6.12'), + ('LibTIFF', '4.0.3'), + ('JasPer', '1.900.1'), + (java, javaver ,'', True), + ('ant', '1.9.3', '-%s-%s' % (java,javaver), True), + ('GLib', '2.40.0') +] + +preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' + +configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DBUILD_PYTHON_SUPPORT=ON ' +configopts += '-DPYTHON_PACKAGES_PATH=$EBROOTPYTHON/lib/python%s/site-packages ' % pythonshortver +configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' +configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so ' +configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' +configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' +configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' +configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.so ' +configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' +configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.so ' +configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' +configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' +configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' +configopts += '-DWITH_IPP=ON ' +configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' +configopts += '-DWITH_CUDA=OFF ' + +sanity_check_paths = { + 'files': ['lib/libopencv_core.so'] + + [ 'bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade'] ], + 'dirs': ['include'] +} + +modextrapaths = { + 'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver, + 'CLASSPATH': 'share/OpenCV/java', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch new file mode 100644 index 0000000000000000000000000000000000000000..bc7d809672b5c5cb335ed5e873b6392b4bbf653c --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch @@ -0,0 +1,14 @@ +#By defualt OpenCV looks IPP lib dir in $IPPROOT../lib +# In our setup it is at $IPPROOT/lib +# By B. Hajgato September 17th 2014 +--- cmake/OpenCVFindIPP.cmake.orig 2014-09-17 15:40:55.877279310 +0200 ++++ cmake/OpenCVFindIPP.cmake 2014-09-17 15:52:31.151177525 +0200 +@@ -229,7 +229,7 @@ + endif() + + if (UNIX) +- get_filename_component(INTEL_COMPILER_LIBRARY_DIR ${IPP_ROOT_DIR}/../lib REALPATH) ++ get_filename_component(INTEL_COMPILER_LIBRARY_DIR ${IPP_ROOT_DIR}/lib REALPATH) + if (IPP_X64) + if(NOT EXISTS ${INTEL_COMPILER_LIBRARY_DIR}/intel64) + message(SEND_ERROR "Intel compiler EM64T libraries not found") diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-20130711_IMPI.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-20130711_IMPI.patch new file mode 100644 index 0000000000000000000000000000000000000000..f871acfc5dc4bceaa94a23afb73ca9cdd8bf910c --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-20130711_IMPI.patch @@ -0,0 +1,67 @@ +--- OpenFOAM-1.6-ext/etc/settings.sh.orig 2013-09-13 16:29:27.571292096 +0200 ++++ OpenFOAM-1.6-ext/etc/settings.sh 2013-09-13 16:27:25.159778606 +0200 +@@ -307,6 +307,16 @@ + unset mpi_version + ;; + ++IMPI) ++ export MPI_HOME=$EBROOTIMPI/intel64 ++ export MPI_ARCH_PATH=$EBROOTIMPI/intel64 ++ ++ _foamAddPath $MPI_ARCH_PATH/bin ++ _foamAddLib $MPI_ARCH_PATH/lib ++ ++ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/impi ++ ;; ++ + MPICH) + mpi_version=mpich-1.2.4 + export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version +diff -ruN OpenFOAM-1.6-ext.orig/wmake/rules/linux64Icc/mplibIMPI OpenFOAM-1.6-ext/wmake/rules/linux64Icc/mplibIMPI +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Icc/mplibIMPI 1970-01-01 01:00:00.000000000 +0100 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Icc/mplibIMPI 2013-09-13 18:20:06.000000000 +0200 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -I$(MPI_ARCH_PATH)/include -DMPICH_SKIP_MPICXX ++PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpi +--- OpenFOAM-1.6-ext/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options.orig 2013-09-13 11:44:11.000000000 +0200 ++++ OpenFOAM-1.6-ext/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2013-09-19 06:56:01.125747000 +0200 +@@ -7,9 +7,8 @@ + + EXE_INC = \ + -I$(LIB_SRC)/finiteVolume/lnInclude \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/Lib \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/IMlib \ ++ -I$(PARMGRIDGEN_INCLUDE_DIR) \ + $(TYPE_REAL) + + LIB_LIBS = \ +- -L$(PARMGRIDGEN_LIB_DIR) -lMGridGen ++ -L$(PARMGRIDGEN_LIB_DIR) -lmgrid +--- OpenFOAM-1.6-ext/src/decompositionMethods/metisDecomp/Make/options.orig 2013-09-13 11:44:11.000000000 +0200 ++++ OpenFOAM-1.6-ext/src/decompositionMethods/metisDecomp/Make/options 2013-09-19 22:13:56.956372258 +0200 +@@ -1,10 +1,13 @@ ++include $(RULES)/mplib$(WM_MPLIB) ++ + EXE_INC = \ ++ $(PINC) $(PFLAGS) \ + -I$(METIS_INCLUDE_DIR) \ + -I../decompositionMethods/lnInclude \ + -I../scotchDecomp/lnInclude + + LIB_LIBS = \ ++ $(PLIBS) \ + -L$(FOAM_LIBBIN)/dummy \ +- -L$(METIS_LIB_DIR) -lmetis \ +- -L$(METIS_LIB_DIR) -lGKlib ++ -L$(METIS_LIB_DIR) -lmetis + +--- OpenFOAM-1.6-ext/src/decompositionMethods/parMetisDecomp/Make/options.orig 2013-09-13 11:44:11.000000000 +0200 ++++ OpenFOAM-1.6-ext/src/decompositionMethods/parMetisDecomp/Make/options 2013-09-20 07:09:45.114891103 +0200 +@@ -10,5 +10,4 @@ + + LIB_LIBS = \ + -L$(FOAM_MPI_LIBBIN) \ +- -L$(PARMETIS_LIB_DIR) -lmetis-parmetis \ +- -L$(PARMETIS_LIB_DIR) -lparmetis ++ -L$(PARMETIS_LIB_DIR) -lparmetis -lmetis diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8f00a37b116ebc4c720008d13a48610f672cb30 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb @@ -0,0 +1,32 @@ +easyblock = 'EB_OpenFOAM' + +name = 'OpenFOAM-Extend' +version = '1.6' +versionsuffix = '-20130711' + +homepage = 'http://www.extend-project.de/' +description = """OpenFOAM is a free, open source CFD software package. +OpenFOAM has an extensive range of features to solve anything from complex fluid flows +involving chemical reactions, turbulence and heat transfer, +to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['OpenFOAM-%(version)s-ext%(versionsuffix)s.tar.gz'] + +patches = [ + 'OpenFOAM-Extend-%(version)s_METIS-ParMGridGen.patch', + 'OpenFOAM-Extend-%(version)s_comp-mpi.patch', +] + +dependencies = [ + ('ParMETIS', '3.2.0'), + ('METIS', '4.0.3'), # order matters, METIS need to be listed after ParMETIS to get $CPATH right + ('SCOTCH', '5.1.12b_esmumps'), + ('Mesquite', '2.3.0'), + ('ParMGridGen', '1.0'), +] + +builddependencies = [('flex', '2.5.35')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb new file mode 100644 index 0000000000000000000000000000000000000000..65508883f9b8e831c90b52738f95771a79575864 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb @@ -0,0 +1,33 @@ +easyblock = 'EB_OpenFOAM' + +name = 'OpenFOAM-Extend' +version = '1.6' +versionsuffix = '-20130711' + +homepage = 'http://www.extend-project.de/' +description = """OpenFOAM is a free, open source CFD software package. +OpenFOAM has an extensive range of features to solve anything from complex fluid flows +involving chemical reactions, turbulence and heat transfer, +to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +sources = ['OpenFOAM-%(version)s-ext%(versionsuffix)s.tar.gz'] + +patches = [ + 'OpenFOAM-Extend-%(version)s_METIS-ParMGridGen.patch', + 'OpenFOAM-Extend-%(version)s_comp-mpi.patch', + 'OpenFOAM-Extend-%(version)s_ictce.patch', +] + +dependencies = [ + ('ParMETIS', '3.2.0'), + ('METIS', '4.0.3'), # order matters, METIS need to be listed after ParMETIS to get $CPATH right + ('SCOTCH', '5.1.12b_esmumps'), + ('Mesquite', '2.3.0'), + ('ParMGridGen', '1.0'), +] + +builddependencies = [('flex', '2.5.35')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_METIS-ParMGridGen.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_METIS-ParMGridGen.patch new file mode 100644 index 0000000000000000000000000000000000000000..511abc025a84b075c1cd7c407482b3b7e1a11a43 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_METIS-ParMGridGen.patch @@ -0,0 +1,35 @@ +--- OpenFOAM-1.6-ext/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options.orig 2013-09-13 11:44:11.000000000 +0200 ++++ OpenFOAM-1.6-ext/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2013-09-19 06:56:01.125747000 +0200 +@@ -7,9 +7,8 @@ + + EXE_INC = \ + -I$(LIB_SRC)/finiteVolume/lnInclude \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/Lib \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/IMlib \ ++ -I$(PARMGRIDGEN_INCLUDE_DIR) \ + $(TYPE_REAL) + + LIB_LIBS = \ +- -L$(PARMGRIDGEN_LIB_DIR) -lMGridGen ++ -L$(PARMGRIDGEN_LIB_DIR) -lmgrid +--- OpenFOAM-1.6-ext/src/decompositionMethods/parMetisDecomp/Make/options.orig 2013-09-13 11:44:11.000000000 +0200 ++++ OpenFOAM-1.6-ext/src/decompositionMethods/parMetisDecomp/Make/options 2013-09-20 07:09:45.114891103 +0200 +@@ -10,5 +10,4 @@ + + LIB_LIBS = \ + -L$(FOAM_MPI_LIBBIN) \ +- -L$(PARMETIS_LIB_DIR) -lmetis-parmetis \ +- -L$(PARMETIS_LIB_DIR) -lparmetis ++ -L$(PARMETIS_LIB_DIR) -lparmetis -lmetis +--- OpenFOAM-1.6-ext/src/decompositionMethods/metisDecomp/Make/options.orig 2013-09-13 11:44:11.000000000 +0200 ++++ OpenFOAM-1.6-ext/src/decompositionMethods/metisDecomp/Make/options 2014-09-11 14:14:39.059743000 +0200 +@@ -4,7 +4,7 @@ + -I../scotchDecomp/lnInclude + + LIB_LIBS = \ ++ $(PLIBS) \ + -L$(FOAM_LIBBIN)/dummy \ +- -L$(METIS_LIB_DIR) -lmetis \ +- -L$(METIS_LIB_DIR) -lGKlib ++ -L$(METIS_LIB_DIR) -lmetis + diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_comp-mpi.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_comp-mpi.patch new file mode 100644 index 0000000000000000000000000000000000000000..8112e42f760c932247bd7563b102186cd0ade4d6 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_comp-mpi.patch @@ -0,0 +1,72 @@ +--- OpenFOAM-1.6-ext/etc/settings.sh.orig 2014-06-18 12:53:06.000000000 +0200 ++++ OpenFOAM-1.6-ext/etc/settings.sh 2014-09-10 17:49:09.488313961 +0200 +@@ -391,6 +391,11 @@ + unset mpi_version + ;; + ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/mpi ++ ;; ++ + MPICH) + mpi_version=mpich-1.2.4 + export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version +diff -ruN OpenFOAM-1.6-ext.orig/wmake/rules/linux64Icc/mplibEASYBUILDMPI OpenFOAM-1.6-ext/wmake/rules/linux64Icc/mplibEASYBUILDMPI +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Icc/mplibEASYBUILDMPI 1970-01-01 01:00:00.000000000 +0100 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Icc/mplibEASYBUILDMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -DMPICH_SKIP_MPICXX ++PLIBS = +diff -ruN OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/mplibEASYBUILDMPI OpenFOAM-1.6-ext/wmake/rules/linux64Icc/mplibEASYBUILDMPI +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/mplibEASYBUILDMPI 1970-01-01 01:00:00.000000000 +0100 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/mplibEASYBUILDMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -DMPICH_SKIP_MPICXX ++PLIBS = +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/c.orig 2014-09-04 14:14:31.446294000 +0200 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/c 2014-09-04 14:15:19.846263000 +0200 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) -fpermissive + + include $(RULES)/c$(WM_COMPILE_OPTION) + +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/c++.orig 2014-09-04 14:14:41.145266000 +0200 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/c++ 2014-09-04 14:15:26.146097000 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) -fpermissive + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +--- OpenFOAM-1.6-ext/wmake/rules/linux64Icc/c++.orig 2014-09-11 14:20:13.041097000 +0200 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Icc/c++ 2014-09-11 14:20:24.338935000 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -wd327,584,654,819,1125,1476,1505,1572 + +-CC = icpc -DIntel ++CC = $(MPICXX) -DIntel + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +--- OpenFOAM-1.6-ext/wmake/rules/linux64Icc/c.orig 2014-09-11 14:19:17.209906000 +0200 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Icc/c 2014-09-11 14:19:32.840518000 +0200 +@@ -2,7 +2,7 @@ + + cWARN = + +-cc = icc ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_ictce.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_ictce.patch new file mode 100644 index 0000000000000000000000000000000000000000..5ba6b0a000404a01c86599d3d2ff08d2215806d5 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_ictce.patch @@ -0,0 +1,80 @@ +--- OpenFOAM-1.6-ext/src/finiteVolume/fields/fvPatchFields/constraint/wedge/wedgeFvPatchScalarField.C.orig 2013-09-18 12:15:11.480831000 +0200 ++++ OpenFOAM-1.6-ext/src/finiteVolume/fields/fvPatchFields/constraint/wedge/wedgeFvPatchScalarField.C 2013-09-18 12:15:49.570197000 +0200 +@@ -49,7 +49,7 @@ + updateCoeffs(); + } + +- operator==(patchInternalField()); ++ this->operator==(patchInternalField()); + } + + +--- OpenFOAM-1.6-ext/src/engine/derivedFvPatchFields/engineTimeVaryingUniformFixedValue/engineTimeVaryingUniformFixedValueFvPatchFields.C.orig 2013-09-18 14:14:40.558432000 +0200 ++++ OpenFOAM-1.6-ext/src/engine/derivedFvPatchFields/engineTimeVaryingUniformFixedValue/engineTimeVaryingUniformFixedValueFvPatchFields.C 2013-09-18 14:15:01.318844000 +0200 +@@ -48,7 +48,7 @@ + + checkTable(); + +- operator== ++ this->operator== + ( + interpolateXY + ( +@@ -73,7 +73,7 @@ + + checkTable(); + +- operator== ++ this->operator== + ( + -interpolateXY + ( +@@ -98,7 +98,7 @@ + + checkTable(); + +- operator== ++ this->operator== + ( + interpolateXY + ( +@@ -123,7 +123,7 @@ + + checkTable(); + +- operator== ++ this->operator== + ( + interpolateXY + ( +@@ -148,7 +148,7 @@ + + checkTable(); + +- operator== ++ this->operator== + ( + interpolateXY + ( +--- OpenFOAM-1.6-ext/src/VectorN/finiteVolume/fields/fvPatchFields/wedgeFvPatchVectorNFields.C.orig 2013-09-18 14:13:33.186815000 +0200 ++++ OpenFOAM-1.6-ext/src/VectorN/finiteVolume/fields/fvPatchFields/wedgeFvPatchVectorNFields.C 2013-09-18 14:13:46.312655000 +0200 +@@ -54,7 +54,7 @@ + updateCoeffs(); \ + } \ + \ +- operator==(patchInternalField()); \ ++ this->operator==(patchInternalField()); \ + } \ + \ + template<> \ +--- OpenFOAM-1.6-ext/src/finiteArea/fields/faPatchFields/constraint/wedge/wedgeFaPatchScalarField.C.orig 2013-09-18 14:12:30.105165000 +0200 ++++ OpenFOAM-1.6-ext/src/finiteArea/fields/faPatchFields/constraint/wedge/wedgeFaPatchScalarField.C 2013-09-18 14:12:40.006153000 +0200 +@@ -53,7 +53,7 @@ + updateCoeffs(); + } + +- operator==(patchInternalField()); ++ this->operator==(patchInternalField()); + } + + diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_linux64Gcc-fpermissive.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_linux64Gcc-fpermissive.patch new file mode 100644 index 0000000000000000000000000000000000000000..c39bfdd9f90aaf0a14b3ea725245d9adbed029b1 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6_linux64Gcc-fpermissive.patch @@ -0,0 +1,24 @@ +diff -ru OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/c OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/c +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/c 2013-09-13 11:44:12.000000000 +0200 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/c 2014-04-30 15:28:49.313680000 +0200 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = gcc -m64 -fpermissive + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-1.6-ext.orig/wmake/rules/linux64Gcc/c++ 2013-09-13 11:44:12.000000000 +0200 ++++ OpenFOAM-1.6-ext/wmake/rules/linux64Gcc/c++ 2014-04-30 15:28:38.265722000 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = g++ -m64 -fpermissive + + include $(RULES)/c++$(WM_COMPILE_OPTION) + diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-20140227_IMPI.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-20140227_IMPI.patch new file mode 100644 index 0000000000000000000000000000000000000000..bcbde1d96035b9cc18cf49ae9bbcc9b1fc3f3f22 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-20140227_IMPI.patch @@ -0,0 +1,67 @@ +diff -ruN foam-extend-3.0.orig/etc/settings.sh foam-extend-3.0/etc/settings.sh +--- foam-extend-3.0.orig/etc/settings.sh 2014-02-27 09:52:22.524463655 +0100 ++++ foam-extend-3.0/etc/settings.sh 2014-02-27 11:48:54.290303826 +0100 +@@ -334,6 +334,16 @@ + unset mpi_version + ;; + ++IMPI) ++ export MPI_HOME=$EBROOTIMPI/intel64 ++ export MPI_ARCH_PATH=$EBROOTIMPI/intel64 ++ ++ _foamAddPath $MPI_ARCH_PATH/bin ++ _foamAddLib $MPI_ARCH_PATH/lib ++ ++ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/impi ++ ;; ++ + MPICH) + mpi_version=mpich-1.2.4 + export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version +diff -ruN foam-extend-3.0.orig/src/decompositionMethods/metisDecomp/Make/options foam-extend-3.0/src/decompositionMethods/metisDecomp/Make/options +--- foam-extend-3.0.orig/src/decompositionMethods/metisDecomp/Make/options 2014-02-27 09:52:22.558463656 +0100 ++++ foam-extend-3.0/src/decompositionMethods/metisDecomp/Make/options 2014-02-27 11:50:36.439475845 +0100 +@@ -1,8 +1,12 @@ ++include $(RULES)/mplib$(WM_MPLIB) ++ + EXE_INC = \ ++ $(PINC) $(PFLAGS) \ + -I$(METIS_INCLUDE_DIR) \ + -I../decompositionMethods/lnInclude \ + -I../scotchDecomp/lnInclude + + LIB_LIBS = \ ++ $(PLIBS) \ + -L$(FOAM_LIBBIN)/dummy \ + -L$(METIS_LIB_DIR) -lmetis +diff -ruN foam-extend-3.0.orig/src/decompositionMethods/parMetisDecomp/Make/options foam-extend-3.0/src/decompositionMethods/parMetisDecomp/Make/options +--- foam-extend-3.0.orig/src/decompositionMethods/parMetisDecomp/Make/options 2014-02-27 09:52:22.558463656 +0100 ++++ foam-extend-3.0/src/decompositionMethods/parMetisDecomp/Make/options 2014-02-27 11:51:10.259206062 +0100 +@@ -9,4 +9,4 @@ + + LIB_LIBS = \ + -L$(FOAM_MPI_LIBBIN) \ +- -L$(PARMETIS_LIB_DIR) -lparmetis ++ -L$(PARMETIS_LIB_DIR) -lparmetis -lmetis +diff -ruN foam-extend-3.0.orig/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options foam-extend-3.0/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options +--- foam-extend-3.0.orig/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2014-02-27 09:52:22.860463667 +0100 ++++ foam-extend-3.0/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2014-02-27 11:48:54.290303826 +0100 +@@ -7,9 +7,8 @@ + + EXE_INC = \ + -I$(LIB_SRC)/finiteVolume/lnInclude \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/Lib \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/IMlib \ ++ -I$(PARMGRIDGEN_INCLUDE_DIR) \ + $(TYPE_REAL) + + LIB_LIBS = \ +- -L$(PARMGRIDGEN_LIB_DIR) -lMGridGen ++ -L$(PARMGRIDGEN_LIB_DIR) -lmgrid +diff -ruN foam-extend-3.0.orig/wmake/rules/linux64Icc/mplibIMPI foam-extend-3.0/wmake/rules/linux64Icc/mplibIMPI +--- foam-extend-3.0.orig/wmake/rules/linux64Icc/mplibIMPI 1970-01-01 01:00:00.000000000 +0100 ++++ foam-extend-3.0/wmake/rules/linux64Icc/mplibIMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -I$(MPI_ARCH_PATH)/include -DMPICH_SKIP_MPICXX ++PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpi diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb new file mode 100644 index 0000000000000000000000000000000000000000..8f0c7a12d78f586c2c289eb1f2a5d462a5c30662 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb @@ -0,0 +1,45 @@ +easyblock = 'EB_OpenFOAM' + +name = 'OpenFOAM-Extend' +version = '3.0' +versionsuffix = '-20140227' + +homepage = 'http://www.extend-project.de/' +description = """OpenFOAM is a free, open source CFD software package. +OpenFOAM has an extensive range of features to solve anything from complex fluid flows +involving chemical reactions, turbulence and heat transfer, +to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['foam-extend-%(version)s%(versionsuffix)s.tar.gz'] + +patches = [ + 'OpenFOAM-Extend-%(version)s_METIS-ParMGridGen.patch', + 'OpenFOAM-Extend-%(version)s_comp-mpi.patch', + 'OpenFOAM-Extend-%(version)s_build-qa.patch', +] + +dependencies = [ + ('hwloc', '1.6.2', '', ('GCC', '4.7.2')), + ('ParMETIS', '4.0.3'), + ('METIS', '5.0.2'), # order matters, METIS need to be listed after ParMETIS to get $CPATH right + ('SCOTCH', '5.1.12b_esmumps'), + ('Mesquite', '2.3.0'), + ('ParMGridGen', '1.0'), + ('Python', '2.7.6'), + # Libccmio v2.6.1, zoltan v3.5 +] + +builddependencies = [ + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('M4', '1.4.16'), + ('CMake', '2.8.12'), +] + +prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) + +parallel = 4 + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_METIS-ParMGridGen.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_METIS-ParMGridGen.patch new file mode 100644 index 0000000000000000000000000000000000000000..0f6b6b5b6394a7bb5ebb41ef196bed42a1a4a712 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_METIS-ParMGridGen.patch @@ -0,0 +1,24 @@ +diff -ruN foam-extend-3.0.orig/src/decompositionMethods/parMetisDecomp/Make/options foam-extend-3.0/src/decompositionMethods/parMetisDecomp/Make/options +--- foam-extend-3.0.orig/src/decompositionMethods/parMetisDecomp/Make/options 2014-02-27 09:52:22.558463656 +0100 ++++ foam-extend-3.0/src/decompositionMethods/parMetisDecomp/Make/options 2014-02-27 11:51:10.259206062 +0100 +@@ -9,4 +9,4 @@ + + LIB_LIBS = \ + -L$(FOAM_MPI_LIBBIN) \ +- -L$(PARMETIS_LIB_DIR) -lparmetis ++ -L$(PARMETIS_LIB_DIR) -lparmetis -lmetis +diff -ruN foam-extend-3.0.orig/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options foam-extend-3.0/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options +--- foam-extend-3.0.orig/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2014-02-27 09:52:22.860463667 +0100 ++++ foam-extend-3.0/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2014-02-27 11:48:54.290303826 +0100 +@@ -7,9 +7,8 @@ + + EXE_INC = \ + -I$(LIB_SRC)/finiteVolume/lnInclude \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/Lib \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/IMlib \ ++ -I$(PARMGRIDGEN_INCLUDE_DIR) \ + $(TYPE_REAL) + + LIB_LIBS = \ +- -L$(PARMGRIDGEN_LIB_DIR) -lMGridGen ++ -L$(PARMGRIDGEN_LIB_DIR) -lmgrid diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_build-qa.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_build-qa.patch new file mode 100644 index 0000000000000000000000000000000000000000..a08f136cb639c1b5f298dda45cf0e0309e5c8e5a --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_build-qa.patch @@ -0,0 +1,22 @@ +--- Allwmake.firstInstall.orig 2014-02-27 14:04:26.632583000 +0100 ++++ Allwmake.firstInstall 2014-02-27 14:04:43.937744000 +0100 +@@ -28,7 +28,8 @@ + echo " Fedora: \"export QT_BIN_DIR=/usr/lib64/qt4/bin\"" + echo " openSuse: \"export QT_BIN_DIR=/usr/bin\"" + echo +- read -r -p "Proceed without compiling ParaView [Y/n] " response ++ echo "Proceed without compiling ParaView [Y/n] " ++ read -r response + if [[ $response =~ ^([nN][oO]|[nN])$ ]] + then + exit 0 +@@ -50,7 +50,8 @@ + echo "\$CUDA_ARCH is required by nvcc compiler but not set." + echo "Check section '-gpu-architecture' in 'man nvcc' for details." + echo +- read -r -p "Proceed without compiling cudaSolvers? [Y/n] " response ++ echo "Proceed without compiling cudaSolvers? [Y/n] " ++ read -r response + if [[ $response =~ ^([nN][oO]|[nN])$ ]] + then + exit 0 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_comp-mpi.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_comp-mpi.patch new file mode 100644 index 0000000000000000000000000000000000000000..ad837e3a466fd094b4f8a6372cd52e207247d130 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0_comp-mpi.patch @@ -0,0 +1,50 @@ +diff -ruN foam-extend-3.0.orig/wmake/rules/linux64Icc/mplibEASYBUILDMPI foam-extend-3.0/wmake/rules/linux64Icc/mplibEASYBUILDMPI +--- foam-extend-3.0.orig/wmake/rules/linux64Icc/mplibEASYBUILDMPI 1970-01-01 01:00:00.000000000 +0100 ++++ foam-extend-3.0/wmake/rules/linux64Icc/mplibEASYBUILDMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -DMPICH_SKIP_MPICXX ++PLIBS = +diff -ruN foam-extend-3.0.orig/wmake/rules/linux64Gcc/mplibEASYBUILDMPI foam-extend-3.0/wmake/rules/linux64Icc/mplibEASYBUILDMPI +--- foam-extend-3.0.orig/wmake/rules/linux64Gcc/mplibEASYBUILDMPI 1970-01-01 01:00:00.000000000 +0100 ++++ foam-extend-3.0/wmake/rules/linux64Gcc/mplibEASYBUILDMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -DMPICH_SKIP_MPICXX ++PLIBS = +--- foam-extend-3.0.orig/wmake/rules/linux64Gcc/c.orig 2014-09-04 14:14:31.446294000 +0200 ++++ foam-extend-3.0/wmake/rules/linux64Gcc/c 2014-09-04 14:15:19.846263000 +0200 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +--- foam-extend-3.0.orig/wmake/rules/linux64Gcc/c++.orig 2014-09-04 14:14:41.145266000 +0200 ++++ foam-extend-3.0/wmake/rules/linux64Gcc/c++ 2014-09-04 14:15:26.146097000 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +--- foam-extend-3.0/etc/settings.sh.orig 2014-06-18 12:53:06.000000000 +0200 ++++ foam-extend-3.0/etc/settings.sh 2014-09-10 17:49:09.488313961 +0200 +@@ -391,6 +391,11 @@ + unset mpi_version + ;; + ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/mpi ++ ;; ++ + MPICH) + mpi_version=mpich-1.2.4 + export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..2e1ac4e27f60e3c03766bf759d7448b69e126290 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb @@ -0,0 +1,45 @@ +easyblock = 'EB_OpenFOAM' + +name = 'OpenFOAM-Extend' +version = '3.1' + +homepage = 'http://www.extend-project.de/' +description = """OpenFOAM is a free, open source CFD software package. +OpenFOAM has an extensive range of features to solve anything from complex fluid flows +involving chemical reactions, turbulence and heat transfer, +to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = ['http://downloads.sourceforge.net/project/openfoam-extend/foam-extend-%(version)s/'] +sources = ['foam-extend-%(version)s_f77b480.tgz'] + +patches = [ + 'OpenFOAM-Extend-%(version)s_METIS-ParMGridGen.patch', + 'OpenFOAM-Extend-%(version)s_build-qa.patch', + 'OpenFOAM-Extend-%(version)s_comp-mpi.patch', +] + +dependencies = [ + ('ParMETIS', '4.0.3'), + ('METIS', '5.0.2'), # order matters, METIS need to be listed after ParMETIS to get $CPATH right + ('SCOTCH', '6.0.0_esmumps'), + ('Mesquite', '2.3.0'), + ('ParMGridGen', '1.0'), + ('Python', '2.7.6'), + # Libccmio v2.6.1, zoltan v3.5 +] + +builddependencies = [ + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('M4', '1.4.16'), + ('CMake', '2.8.12'), +] + +prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) + +parallel = 4 + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_METIS-ParMGridGen.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_METIS-ParMGridGen.patch new file mode 100644 index 0000000000000000000000000000000000000000..85682e479b21e9f531c0b52d5b1b4210d8ff09b0 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_METIS-ParMGridGen.patch @@ -0,0 +1,24 @@ +diff -ruN foam-extend-3.1.orig/src/decompositionMethods/parMetisDecomp/Make/options foam-extend-3.1/src/decompositionMethods/parMetisDecomp/Make/options +--- foam-extend-3.1.orig/src/decompositionMethods/parMetisDecomp/Make/options 2014-02-27 09:52:22.558463656 +0100 ++++ foam-extend-3.1/src/decompositionMethods/parMetisDecomp/Make/options 2014-02-27 11:51:10.259206062 +0100 +@@ -9,4 +9,4 @@ + + LIB_LIBS = \ + -L$(FOAM_MPI_LIBBIN) \ +- -L$(PARMETIS_LIB_DIR) -lparmetis ++ -L$(PARMETIS_LIB_DIR) -lparmetis -lmetis +diff -ruN foam-extend-3.1.orig/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options foam-extend-3.1/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options +--- foam-extend-3.1.orig/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2014-02-27 09:52:22.860463667 +0100 ++++ foam-extend-3.1/src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options 2014-02-27 11:48:54.290303826 +0100 +@@ -7,9 +7,8 @@ + + EXE_INC = \ + -I$(LIB_SRC)/finiteVolume/lnInclude \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/Lib \ +- -I$(PARMGRIDGEN_INCLUDE_DIR)/IMlib \ ++ -I$(PARMGRIDGEN_INCLUDE_DIR) \ + $(TYPE_REAL) + + LIB_LIBS = \ +- -L$(PARMGRIDGEN_LIB_DIR) -lMGridGen ++ -L$(PARMGRIDGEN_LIB_DIR) -lmgrid diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_build-qa.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_build-qa.patch new file mode 100644 index 0000000000000000000000000000000000000000..38a6097e63358137e240da909b8cbd6bdb46d8ff --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_build-qa.patch @@ -0,0 +1,22 @@ +--- foam-extend-3.1/Allwmake.firstInstall.orig 2014-06-18 12:53:06.000000000 +0200 ++++ foam-extend-3.1/Allwmake.firstInstall 2014-09-04 09:09:54.217856000 +0200 +@@ -28,7 +28,8 @@ + echo " Fedora: \"export QT_BIN_DIR=/usr/lib64/qt4/bin\"" + echo " openSuse: \"export QT_BIN_DIR=/usr/bin\"" + echo +- read -r -p "Proceed without compiling ParaView [Y/n] " response ++ echo "Proceed without compiling ParaView [Y/n] " ++ read -r response + if [[ $response =~ ^([nN][oO]|[nN])$ ]] + then + exit 0 +@@ -50,7 +51,8 @@ + echo "\$CUDA_ARCH is required by nvcc compiler but not set." + echo "Check section '-gpu-architecture' in 'man nvcc' for details." + echo +- read -r -p "Proceed without compiling cudaSolvers? [Y/n] " response ++ echo "Proceed without compiling cudaSolvers? [Y/n] " ++ read -r response + if [[ $response =~ ^([nN][oO]|[nN])$ ]] + then + exit 0 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_comp-mpi.patch b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_comp-mpi.patch new file mode 100644 index 0000000000000000000000000000000000000000..c013b7eed38f540844d4171b1429d3446a9d9631 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1_comp-mpi.patch @@ -0,0 +1,50 @@ +diff -ruN foam-extend-3.1.orig/wmake/rules/linux64Icc/mplibEASYBUILDMPI foam-extend-3.0/wmake/rules/linux64Icc/mplibEASYBUILDMPI +--- foam-extend-3.1.orig/wmake/rules/linux64Icc/mplibEASYBUILDMPI 1970-01-01 01:00:00.000000000 +0100 ++++ foam-extend-3.1/wmake/rules/linux64Icc/mplibEASYBUILDMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -DMPICH_SKIP_MPICXX ++PLIBS = +diff -ruN foam-extend-3.1.orig/wmake/rules/linux64Gcc/mplibEASYBUILDMPI foam-extend-3.0/wmake/rules/linux64Icc/mplibEASYBUILDMPI +--- foam-extend-3.1.orig/wmake/rules/linux64Gcc/mplibEASYBUILDMPI 1970-01-01 01:00:00.000000000 +0100 ++++ foam-extend-3.1/wmake/rules/linux64Gcc/mplibEASYBUILDMPI 2014-02-27 11:48:54.290303826 +0100 +@@ -0,0 +1,3 @@ ++PFLAGS = -DMPICH_IGNORE_CXX_SEEK ++PINC = -DMPICH_SKIP_MPICXX ++PLIBS = +--- foam-extend-3.1.orig/wmake/rules/linux64Gcc/c.orig 2014-09-04 14:14:31.446294000 +0200 ++++ foam-extend-3.1/wmake/rules/linux64Gcc/c 2014-09-04 14:15:19.846263000 +0200 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +--- foam-extend-3.1.orig/wmake/rules/linux64Gcc/c++.orig 2014-09-04 14:14:41.145266000 +0200 ++++ foam-extend-3.1/wmake/rules/linux64Gcc/c++ 2014-09-04 14:15:26.146097000 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +--- foam-extend-3.1/etc/settings.sh.orig 2014-06-18 12:53:06.000000000 +0200 ++++ foam-extend-3.1/etc/settings.sh 2014-09-10 17:49:09.488313961 +0200 +@@ -391,6 +391,11 @@ + unset mpi_version + ;; + ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/mpi ++ ;; ++ + MPICH) + mpi_version=mpich-1.2.4 + export MPI_HOME=$WM_THIRD_PARTY_DIR/$mpi_version diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9a63e57ca5cfd814a531ec39aeacff060f6ea4a2 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb @@ -0,0 +1,24 @@ +name = 'OpenFOAM' +version = '2.0.1' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + 'OpenFOAM-%(version)s.gtgz', + 'ThirdParty-%(version)s.gtgz', +] + +patches = ['cleanup-OpenFOAM-%s.patch' % version, + ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir + ] + +builddependencies = [('flex', '2.5.35')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..1020e0de704f3af3c2b9f379f41bf2dee2084e72 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb @@ -0,0 +1,24 @@ +name = 'OpenFOAM' +version = '2.0.1' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'ictce', 'version': '6.1.5'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + 'OpenFOAM-%(version)s.gtgz', + 'ThirdParty-%(version)s.gtgz', +] + +patches = ['cleanup-OpenFOAM-%s.patch' % version, + ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir + ] + +builddependencies = [('flex', '2.5.38')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb index fc95905bea2baad971aa1c995ed3d126f3779103..f8941ca15c5c5805ec33d4655681c327ca7ce716 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb @@ -3,9 +3,9 @@ version = '2.1.1' homepage = 'http://www.openfoam.com/' description = """OpenFOAM is a free, open source CFD software package. -OpenFOAM has an extensive range of features to solve anything from complex fluid flows -involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb index 846b27e9ad7cf9a6cfdaa8beba0f2b1e70c9adbe..3f4d83aadebc580b435c635fe5897a3a76107f4a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb @@ -7,7 +7,6 @@ description = """OpenFOAM is a free, open source CFD software package. involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-goolf-1.4.10.eb index 4f2803ebd1733dcbfc04d3c3a001b04561e1cb2b..91ee1232cc55fb8cc85d1b27beb76e8d8e42c85f 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-goolf-1.4.10.eb @@ -29,6 +29,4 @@ dependencies = [ builddependencies = [('flex', '2.5.37')] -premakeopts = 'SCOTCH_ROOT=$EBROOTSCOTCH' - moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-4.1.13.eb index 93b4f37bde1ffab35b953321ad4ec624c3b1dcc3..067f92d99f72e02191d00aee4ce16fd61d08dbbc 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-4.1.13.eb @@ -29,6 +29,4 @@ dependencies = [ builddependencies = [('flex', '2.5.37')] -premakeopts = 'SCOTCH_ROOT=$EBROOTSCOTCH' - moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..c148dfcdb613793c18290fb29d235f92b88c785b --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-ictce-5.3.0.eb @@ -0,0 +1,32 @@ +name = 'OpenFOAM' +version = '2.2.0' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-%(version)s_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.2'), + ('SCOTCH', '6.0.0_esmumps'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.37')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-iqacml-4.4.13.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-iqacml-4.4.13.eb index 3f2e8fb6979de2b143f26b5fdea91fbfcce109e1..4583715b2c4e6e6c6402215437fdfd1a48ca30fd 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-iqacml-4.4.13.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.0-iqacml-4.4.13.eb @@ -29,6 +29,4 @@ dependencies = [ builddependencies = [('flex', '2.5.37')] -premakeopts = 'SCOTCH_ROOT=$EBROOTSCOTCH' - moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-goolf-1.4.10-bugfix1.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-goolf-1.4.10-bugfix1.eb new file mode 100644 index 0000000000000000000000000000000000000000..565d6b1bfd0741818be3b2fbe26a5d5d27dc2c96 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-goolf-1.4.10-bugfix1.eb @@ -0,0 +1,40 @@ +name = 'OpenFOAM' +version = '2.3.0' +versionsuffix = '-bugfix1' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics. + +This version of OpenFOAM is patched to include these two bugfixes: +http://www.openfoam.org/mantisbt/view.php?id=1309 +http://www.openfoam.org/mantisbt/view.php?id=1177 +""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'OpenFOAM-%(version)s_bugfix1.patch', # this patch fix issues http://www.openfoam.org/mantisbt/view.php?id=1309 + # and http://www.openfoam.org/mantisbt/view.php?id=1177 + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-%(version)s_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.2'), + ('SCOTCH', '6.0.0_esmumps'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.37')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..6803b88fa3cf01fe762613fffa8f05e020beb7c0 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-goolf-1.4.10.eb @@ -0,0 +1,32 @@ +name = 'OpenFOAM' +version = '2.3.0' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-%(version)s_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.2'), + ('SCOTCH', '6.0.0_esmumps'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.37')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0e57645105aebe3edf30d076fb0d5c0dc5e92b2b --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-ictce-5.3.0.eb @@ -0,0 +1,32 @@ +name = 'OpenFOAM' +version = '2.3.0' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-%(version)s_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.2'), + ('SCOTCH', '6.0.0_esmumps'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.37')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0268149c05e4e2e6764d8b42d90e2a886eccfcd8 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-ictce-5.5.0.eb @@ -0,0 +1,32 @@ +name = 'OpenFOAM' +version = '2.3.0' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-%(version)s_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.2'), + ('SCOTCH', '6.0.0_esmumps'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.37')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0_bugfix1.patch b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0_bugfix1.patch new file mode 100644 index 0000000000000000000000000000000000000000..16bd3301cf1547db9d1c17bd2b0d2de4f2efb433 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0_bugfix1.patch @@ -0,0 +1,33 @@ +This patch fix the two following issues: + http://www.openfoam.org/mantisbt/view.php?id=1309 + http://www.openfoam.org/mantisbt/view.php?id=1177 +--- OpenFOAM-2.3.0/src/thermophysicalModels/radiationModels/radiationModel/viewFactor/viewFactor.C.orig 2014-06-17 12:49:25.056375000 +0300 ++++ OpenFOAM-2.3.0/src/thermophysicalModels/radiationModels/radiationModel/viewFactor/viewFactor.C 2014-06-17 12:48:21.224628260 +0300 +@@ -536,7 +536,7 @@ + else + { + C[i][j] = (1.0 - invEj)*Fmatrix_()[i][j]; +- q[i] += Fmatrix_()[i][j]*sigmaT4 - QrExt[j]; ++ q[i] += Fmatrix_()[i][j]*sigmaT4; + } + + } +@@ -584,7 +584,7 @@ + } + else + { +- q[i] += Fmatrix_()[i][j]*sigmaT4 - QrExt[j]; ++ q[i] += Fmatrix_()[i][j]*sigmaT4; + } + } + } +--- OpenFOAM-2.3.0/src/turbulenceModels/compressible/turbulenceModel/derivedFvPatchFields/turbulentTemperatureRadCoupledMixed/turbulentTemperatureRadCoupledMixedFvPatchScalarField.C.orig 2014-06-17 10:44:48.192214000 +0300 ++++ OpenFOAM-2.3.0/src/turbulenceModels/compressible/turbulenceModel/derivedFvPatchFields/turbulentTemperatureRadCoupledMixed/turbulentTemperatureRadCoupledMixedFvPatchScalarField.C 2014-06-17 10:45:01.667735757 +0300 +@@ -277,7 +277,6 @@ + os.writeKeyword("Tnbr")<< TnbrName_ << token::END_STATEMENT << nl; + os.writeKeyword("QrNbr")<< QrNbrName_ << token::END_STATEMENT << nl; + os.writeKeyword("Qr")<< QrName_ << token::END_STATEMENT << nl; +- os.writeKeyword("Qr")<< QrName_ << token::END_STATEMENT << nl; + thicknessLayers_.writeEntry("thicknessLayers", os); + thicknessLayers_.writeEntry("kappaLayers", os); + diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0_libreadline.patch b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0_libreadline.patch new file mode 100644 index 0000000000000000000000000000000000000000..e16c279084c3a71c2ad327967ab40b40a266d1e1 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0_libreadline.patch @@ -0,0 +1,17 @@ +diff -ru OpenFOAM-2.2.0.orig/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-2.2.0/applications/utilities/mesh/manipulation/setSet/Allwmake +--- OpenFOAM-2.2.0.orig/applications/utilities/mesh/manipulation/setSet/Allwmake 2013-01-11 18:26:25.000000000 +0100 ++++ OpenFOAM-2.2.0/applications/utilities/mesh/manipulation/setSet/Allwmake 2013-05-23 09:35:42.604738000 +0200 +@@ -10,11 +10,11 @@ + # eg, ./Allwmake NO_READLINE + # + +-if [ -f /usr/include/readline/readline.h -a "${1%NO_READLINE}" = "$1" ] ++if [ -f $EBROOTLIBREADLINE/include/readline/readline.h -a "${1%NO_READLINE}" = "$1" ] + then + echo "Found -- enabling readline support." + export COMP_FLAGS="-DHAS_READLINE" +- export LINK_FLAGS="-lreadline" ++ export LINK_FLAGS="-L$EBROOTLIBREADLINE/lib -lreadline -L$EBROOTNCURSES -lncurses" + fi + + wmake diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch new file mode 100644 index 0000000000000000000000000000000000000000..22a30fd75b5b58cdf38547a06ef1f525c73e8ffb --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch @@ -0,0 +1,269 @@ +diff -ru OpenFOAM-2.0.1.ORIG/etc/bashrc OpenFOAM-2.0.1/etc/bashrc +--- OpenFOAM-2.0.1.ORIG/etc/bashrc 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/etc/bashrc 2014-07-01 10:58:53.980635981 +0200 +@@ -63,7 +63,7 @@ + + #- Compiler: + # WM_COMPILER = Gcc | Gcc43 | Gcc44 | Gcc45 | Gcc46 | Clang | Icc (Intel icc) +-export WM_COMPILER=Gcc ++: ${WM_COMPILER:=Gcc}; export WM_COMPILER + unset WM_COMPILER_ARCH WM_COMPILER_LIB_ARCH + + #- Architecture: +@@ -81,7 +81,7 @@ + #- MPI implementation: + # WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI + # | GAMMA | MPI | QSMPI +-export WM_MPLIB=OPENMPI ++: ${WM_MPLIB:=OPENMPI}; export WM_MPLIB + + #- Operating System: + # WM_OSTYPE = POSIX | ??? +@@ -115,7 +115,7 @@ + + # Location of third-party software + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +-export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION ++: ${WM_THIRD_PARTY_DIR:=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION}; export WM_THIRD_PARTY_DIR + + # Location of site-specific templates etc + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +diff -ru OpenFOAM-2.0.1.ORIG/etc/config/scotch.sh OpenFOAM-2.0.1/etc/config/scotch.sh +--- OpenFOAM-2.0.1.ORIG/etc/config/scotch.sh 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/etc/config/scotch.sh 2014-07-08 00:06:23.422603272 +0200 +@@ -33,7 +33,11 @@ + # during the wmake process + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_5.1.11 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++if [ -n "${SCOTCH_ROOT}" ] ; then ++ export SCOTCH_ARCH_PATH="${SCOTCH_ROOT}" ++else ++ export SCOTCH_VERSION=scotch_5.1.11 ++ export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++fi + + # ----------------------------------------------------------------------------- +diff -ru OpenFOAM-2.0.1.ORIG/etc/config/settings.csh OpenFOAM-2.0.1/etc/config/settings.csh +--- OpenFOAM-2.0.1.ORIG/etc/config/settings.csh 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/etc/config/settings.csh 2014-07-01 10:58:53.982635976 +0200 +@@ -366,7 +366,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + switch ("$WM_MPLIB") + case OPENMPI: +diff -ru OpenFOAM-2.0.1.ORIG/etc/config/settings.sh OpenFOAM-2.0.1/etc/config/settings.sh +--- OpenFOAM-2.0.1.ORIG/etc/config/settings.sh 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/etc/config/settings.sh 2014-07-03 20:38:00.140345132 +0200 +@@ -386,7 +386,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + case "$WM_MPLIB" in + OPENMPI) +@@ -502,6 +502,10 @@ + _foamAddLib $MPI_ARCH_PATH/lib + ;; + ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; ++ + *) + export FOAM_MPI=dummy + ;; +diff -ru OpenFOAM-2.0.1.ORIG/src/OSspecific/POSIX/fileMonitor.C OpenFOAM-2.0.1/src/OSspecific/POSIX/fileMonitor.C +--- OpenFOAM-2.0.1.ORIG/src/OSspecific/POSIX/fileMonitor.C 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/src/OSspecific/POSIX/fileMonitor.C 2014-07-01 11:47:12.008248918 +0200 +@@ -32,6 +32,7 @@ + #include "regIOobject.H" // for fileModificationSkew symbol + + #ifdef FOAM_USE_INOTIFY ++# include + # include + # include + # include +diff -ru OpenFOAM-2.0.1.ORIG/src/Pstream/dummy/UIPread.C OpenFOAM-2.0.1/src/Pstream/dummy/UIPread.C +--- OpenFOAM-2.0.1.ORIG/src/Pstream/dummy/UIPread.C 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/src/Pstream/dummy/UIPread.C 2014-07-03 19:04:04.937308304 +0200 +@@ -67,6 +67,34 @@ + } + + ++// Add missing constructor ++// (This code is taken from OpenFOAM 2.1.1) ++Foam::UIPstream::UIPstream ++( ++ const int fromProcNo, ++ PstreamBuffers& buffers ++) ++: ++ UPstream(buffers.commsType_), ++ Istream(buffers.format_, buffers.version_), ++ fromProcNo_(fromProcNo), ++ externalBuf_(buffers.recvBuf_[fromProcNo]), ++ externalBufPosition_(buffers.recvBufPos_[fromProcNo]), ++ tag_(buffers.tag_), ++ clearAtEnd_(true), ++ messageSize_(0) ++{ ++ notImplemented ++ ( ++ "UIPstream::UIPstream\n" ++ "(\n" ++ "const int,\n" ++ "PstreamBuffers&\n" ++ ")" ++ ); ++} ++ ++ + // * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * // + + Foam::label Foam::UIPstream::read +diff -ru OpenFOAM-2.0.1.ORIG/src/finiteVolume/fields/fvPatchFields/constraint/wedge/wedgeFvPatchScalarField.C OpenFOAM-2.0.1/src/finiteVolume/fields/fvPatchFields/constraint/wedge/wedgeFvPatchScalarField.C +--- OpenFOAM-2.0.1.ORIG/src/finiteVolume/fields/fvPatchFields/constraint/wedge/wedgeFvPatchScalarField.C 2011-08-03 11:42:18.000000000 +0200 ++++ OpenFOAM-2.0.1/src/finiteVolume/fields/fvPatchFields/constraint/wedge/wedgeFvPatchScalarField.C 2014-07-10 16:00:51.894987531 +0200 +@@ -48,7 +48,7 @@ + updateCoeffs(); + } + +- operator==(patchInternalField()); ++ this->operator==(patchInternalField()); + } + + +diff -ru OpenFOAM-2.0.1.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.0.1/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-2.0.1.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options 2011-08-03 11:42:19.000000000 +0200 ++++ OpenFOAM-2.0.1/src/parallel/decompose/ptscotchDecomp/Make/options 2014-07-08 09:13:19.985079768 +0200 +@@ -4,8 +4,7 @@ + EXE_INC = \ + $(PFLAGS) $(PINC) \ + -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lrt +diff -ru OpenFOAM-2.0.1.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.0.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-2.0.1.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2011-08-03 11:42:19.000000000 +0200 ++++ OpenFOAM-2.0.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2014-07-01 10:58:54.067635849 +0200 +@@ -112,6 +112,8 @@ + + \*---------------------------------------------------------------------------*/ + ++#include "mpi.h" ++ + #include "ptscotchDecomp.H" + #include "addToRunTimeSelectionTable.H" + #include "Time.H" +@@ -121,8 +123,8 @@ + + extern "C" + { +-#include + #include "mpi.h" ++#include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-2.0.1.ORIG/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-2.0.1/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-2.0.1.ORIG/src/parallel/decompose/scotchDecomp/Make/options 2011-08-03 11:42:19.000000000 +0200 ++++ OpenFOAM-2.0.1/src/parallel/decompose/scotchDecomp/Make/options 2014-07-03 20:34:48.490670831 +0200 +@@ -8,8 +8,7 @@ + EXE_INC = \ + $(PFLAGS) $(PINC) \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -I$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/c OpenFOAM-2.0.1/wmake/rules/linux64Gcc/c +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/c 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Gcc/c 2014-07-01 10:58:54.068635847 +0200 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/c++ OpenFOAM-2.0.1/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/c++ 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Gcc/c++ 2014-07-01 10:58:54.070635843 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.0.1/wmake/rules/linux64Gcc/c++Opt +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/c++Opt 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Gcc/c++Opt 2014-07-01 10:58:54.071635842 +0200 +@@ -1,3 +1,3 @@ + #c++DBUG = -O0 -DFULLDEBUG -g + c++DBUG = +-c++OPT = -O3 ++c++OPT = $(CXXFLAGS) +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.0.1/wmake/rules/linux64Gcc/cOpt +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Gcc/cOpt 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Gcc/cOpt 2014-07-01 10:58:54.073635840 +0200 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 ++cOPT = $(CFLAGS) +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/c OpenFOAM-2.0.1/wmake/rules/linux64Icc/c +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/c 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Icc/c 2014-07-01 10:58:54.074635838 +0200 +@@ -2,7 +2,7 @@ + + cWARN = + +-cc = icc ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/c++ OpenFOAM-2.0.1/wmake/rules/linux64Icc/c++ +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/c++ 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Icc/c++ 2014-07-01 10:58:54.076635834 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -wd327,654,819,1125,1476,1505,1572 + +-CC = icpc -std=c++0x ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.0.1/wmake/rules/linux64Icc/c++Opt +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/c++Opt 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Icc/c++Opt 2014-07-01 10:58:54.077635833 +0200 +@@ -1,3 +1,3 @@ + c++DBUG = + #c++OPT = -xSSE3 -O3 -no-prec-div +-c++OPT = -xSSE3 -O1 -no-prec-div ++c++OPT = $(CXXFLAGS) +diff -ru OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/cOpt OpenFOAM-2.0.1/wmake/rules/linux64Icc/cOpt +--- OpenFOAM-2.0.1.ORIG/wmake/rules/linux64Icc/cOpt 2011-08-03 11:42:23.000000000 +0200 ++++ OpenFOAM-2.0.1/wmake/rules/linux64Icc/cOpt 2014-07-01 10:58:54.078635832 +0200 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 -no-prec-div ++cOPT = $(CFLAGS) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch index 4d2aa6c4f288ddb9682f141e5bcc746099925aec..c497399edc9289f7284a51c291d18f8c5be8b5a2 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch @@ -1,6 +1,6 @@ -diff -ru OpenFOAM-2.1.1.orig/etc/bashrc OpenFOAM-2.1.1/etc/bashrc ---- OpenFOAM-2.1.1.orig/etc/bashrc 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/etc/bashrc 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/etc/bashrc OpenFOAM-2.1.1/etc/bashrc +--- OpenFOAM-2.1.1.ORIG/etc/bashrc 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/etc/bashrc 2014-07-07 11:48:54.265168442 +0200 @@ -63,7 +63,7 @@ #- Compiler: @@ -28,9 +28,26 @@ diff -ru OpenFOAM-2.1.1.orig/etc/bashrc OpenFOAM-2.1.1/etc/bashrc # Location of site-specific templates etc # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -diff -ru OpenFOAM-2.1.1.orig/etc/config/settings.csh OpenFOAM-2.1.1/etc/config/settings.csh ---- OpenFOAM-2.1.1.orig/etc/config/settings.csh 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/etc/config/settings.csh 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/etc/config/scotch.sh OpenFOAM-2.1.1/etc/config/scotch.sh +--- OpenFOAM-2.1.1.ORIG/etc/config/scotch.sh 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/etc/config/scotch.sh 2014-07-08 00:10:41.270022590 +0200 +@@ -33,7 +33,11 @@ + # during the wmake process + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_5.1.11 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++if [ -n "${SCOTCH_ROOT}" ] ; then ++ export SCOTCH_ARCH_PATH="${SCOTCH_ROOT}" ++else ++ export SCOTCH_VERSION=scotch_5.1.11 ++ export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++fi + + # ----------------------------------------------------------------------------- +diff -ru OpenFOAM-2.1.1.ORIG/etc/config/settings.csh OpenFOAM-2.1.1/etc/config/settings.csh +--- OpenFOAM-2.1.1.ORIG/etc/config/settings.csh 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/etc/config/settings.csh 2014-07-07 11:48:54.267168438 +0200 @@ -373,7 +373,7 @@ # Communications library # ~~~~~~~~~~~~~~~~~~~~~~ @@ -40,9 +57,9 @@ diff -ru OpenFOAM-2.1.1.orig/etc/config/settings.csh OpenFOAM-2.1.1/etc/config/s switch ("$WM_MPLIB") case SYSTEMOPENMPI: -diff -ru OpenFOAM-2.1.1.orig/etc/config/settings.sh OpenFOAM-2.1.1/etc/config/settings.sh ---- OpenFOAM-2.1.1.orig/etc/config/settings.sh 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/etc/config/settings.sh 2012-07-30 17:00:35.182064969 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/etc/config/settings.sh OpenFOAM-2.1.1/etc/config/settings.sh +--- OpenFOAM-2.1.1.ORIG/etc/config/settings.sh 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/etc/config/settings.sh 2014-07-07 11:51:33.632791855 +0200 @@ -389,7 +389,7 @@ # Communications library # ~~~~~~~~~~~~~~~~~~~~~~ @@ -52,65 +69,36 @@ diff -ru OpenFOAM-2.1.1.orig/etc/config/settings.sh OpenFOAM-2.1.1/etc/config/se case "$WM_MPLIB" in SYSTEMOPENMPI) -@@ -574,6 +574,21 @@ +@@ -574,6 +574,11 @@ _foamAddPath $MPI_ARCH_PATH/bin64 _foamAddLib $MPI_ARCH_PATH/lib64 ;; + -+IMPI) -+ -+ export MPI_HOME=$EBROOTIMPI/intel64 -+ -+ export MPI_ARCH_PATH=$EBROOTIMPI/intel64 -+ -+ _foamAddPath $MPI_ARCH_PATH/bin -+ -+ _foamAddLib $MPI_ARCH_PATH/lib -+ -+ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/impi -+ -+;; ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; + *) export FOAM_MPI=dummy ;; -diff -ru OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C ---- OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2012-07-30 16:58:10.142065364 +0200 -@@ -112,6 +112,8 @@ - - \*---------------------------------------------------------------------------*/ - -+#include "mpi.h" -+ - #include "ptscotchDecomp.H" - #include "addToRunTimeSelectionTable.H" - #include "Time.H" -@@ -121,8 +123,8 @@ - - extern "C" - { --#include - #include "mpi.h" -+#include - #include "ptscotch.h" - } +diff -ru OpenFOAM-2.1.1.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-2.1.1.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/Make/options 2014-07-08 09:13:29.129056950 +0200 +@@ -3,10 +3,8 @@ -diff -ru OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/Make/options ---- OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/Make/options 2012-07-30 16:58:10.142065364 +0200 -@@ -5,7 +5,7 @@ + EXE_INC = \ $(PFLAGS) $(PINC) \ - -I$(SCOTCH_ROOT)/include \ +- -I$(SCOTCH_ROOT)/include \ -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ - -I/usr/include/scotch \ -+ -I$(EBROOTSCOTCH)/include \ -I../decompositionMethods/lnInclude LIB_LIBS = \ -diff -ru OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C ---- OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2012-07-30 16:58:10.142065364 +0200 +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lrt +diff -ru OpenFOAM-2.1.1.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-2.1.1.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2014-07-07 11:48:54.274168420 +0200 @@ -112,6 +112,8 @@ \*---------------------------------------------------------------------------*/ @@ -130,9 +118,24 @@ diff -ru OpenFOAM-2.1.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecom #include "ptscotch.h" } -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-2.1.1/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-2.1.1.ORIG/src/parallel/decompose/scotchDecomp/Make/options 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/src/parallel/decompose/scotchDecomp/Make/options 2014-07-07 16:40:51.514322124 +0200 +@@ -7,10 +7,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/c OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/c 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c 2014-07-07 11:48:54.276168416 +0200 @@ -2,7 +2,7 @@ cWARN = -Wall @@ -142,9 +145,9 @@ diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c OpenFOAM-2.1.1/wmake/rules include $(RULES)/c$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++ ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c++ 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++ 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/c++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/c++ 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++ 2014-07-07 11:48:54.277168414 +0200 @@ -2,7 +2,7 @@ c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor @@ -154,24 +157,24 @@ diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-2.1.1/wmake/rul include $(RULES)/c++$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.1.1/wmake/rules/linux64Gcc/cOpt ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/cOpt 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/cOpt 2012-07-30 16:58:10.142065364 +0200 -@@ -1,2 +1,2 @@ - cDBUG = --cOPT = -O3 -+cOPT = $(CFLAGS) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++Opt ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Gcc/c++Opt 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++Opt 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++Opt +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/c++Opt 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/c++Opt 2014-07-07 11:48:54.279168410 +0200 @@ -1,3 +1,3 @@ #c++DBUG = -O0 -DFULLDEBUG -g c++DBUG = -c++OPT = -O3 +c++OPT = $(CXXFLAGS) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c OpenFOAM-2.1.1/wmake/rules/linux64Icc/c ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.1.1/wmake/rules/linux64Gcc/cOpt +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Gcc/cOpt 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Gcc/cOpt 2014-07-07 11:48:54.278168412 +0200 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 ++cOPT = $(CFLAGS) +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/c OpenFOAM-2.1.1/wmake/rules/linux64Icc/c +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/c 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c 2014-07-07 11:48:54.281168404 +0200 @@ -2,7 +2,7 @@ cWARN = @@ -181,9 +184,9 @@ diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c OpenFOAM-2.1.1/wmake/rules include $(RULES)/c$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++ ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c++ 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++ 2012-07-30 16:58:10.142065364 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/c++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++ +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/c++ 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++ 2014-07-07 11:48:54.282168401 +0200 @@ -2,7 +2,7 @@ c++WARN = -wd327,654,819,1125,1476,1505,1572 @@ -193,17 +196,17 @@ diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c++ OpenFOAM-2.1.1/wmake/rul include $(RULES)/c++$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/cOpt OpenFOAM-2.1.1/wmake/rules/linux64Icc/cOpt ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/cOpt 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/cOpt 2012-07-30 16:58:10.142065364 +0200 -@@ -1,2 +1,2 @@ - cDBUG = --cOPT = -O3 -no-prec-div -+cOPT = $(CFLAGS) -diff -ru OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++Opt ---- OpenFOAM-2.1.1.orig/wmake/rules/linux64Icc/c++Opt 2012-05-24 16:51:32.000000000 +0200 -+++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++Opt 2012-07-30 17:01:08.832064481 +0200 +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++Opt +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/c++Opt 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/c++Opt 2014-07-07 11:48:54.284168397 +0200 @@ -1,2 +1,2 @@ c++DBUG = -c++OPT = -xSSE3 -O2 -no-prec-div +c++OPT = $(CXXFLAGS) +diff -ru OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/cOpt OpenFOAM-2.1.1/wmake/rules/linux64Icc/cOpt +--- OpenFOAM-2.1.1.ORIG/wmake/rules/linux64Icc/cOpt 2012-05-24 16:51:32.000000000 +0200 ++++ OpenFOAM-2.1.1/wmake/rules/linux64Icc/cOpt 2014-07-07 11:48:54.283168399 +0200 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 -no-prec-div ++cOPT = $(CFLAGS) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch index 0d7066e49f49d53b1e4febf5d87599ebf7c79092..81f21c62be44be8c74ed7b362f36e3cf957691ba 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch @@ -1,6 +1,6 @@ -diff -ru OpenFOAM-2.2.0.orig/etc/bashrc OpenFOAM-2.2.0/etc/bashrc ---- OpenFOAM-2.2.0.orig/etc/bashrc 2013-01-14 09:48:51.000000000 +0100 -+++ OpenFOAM-2.2.0/etc/bashrc 2013-05-15 08:53:44.985066000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/etc/bashrc OpenFOAM-2.2.0/etc/bashrc +--- OpenFOAM-2.2.0.ORIG/etc/bashrc 2013-01-14 09:48:51.000000000 +0100 ++++ OpenFOAM-2.2.0/etc/bashrc 2014-07-07 16:36:36.784886564 +0200 @@ -63,7 +63,7 @@ #- Compiler: @@ -28,9 +28,26 @@ diff -ru OpenFOAM-2.2.0.orig/etc/bashrc OpenFOAM-2.2.0/etc/bashrc # Location of site-specific templates etc # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -diff -ru OpenFOAM-2.2.0.orig/etc/config/settings.csh OpenFOAM-2.2.0/etc/config/settings.csh ---- OpenFOAM-2.2.0.orig/etc/config/settings.csh 2013-02-07 10:45:26.000000000 +0100 -+++ OpenFOAM-2.2.0/etc/config/settings.csh 2013-05-15 08:52:51.053366000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/etc/config/scotch.sh OpenFOAM-2.2.0/etc/config/scotch.sh +--- OpenFOAM-2.2.0.ORIG/etc/config/scotch.sh 2013-01-11 18:27:21.000000000 +0100 ++++ OpenFOAM-2.2.0/etc/config/scotch.sh 2014-07-07 19:05:38.008899074 +0200 +@@ -33,7 +33,11 @@ + # during the wmake process + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_6.0.0 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++if [ -n "${SCOTCH_ROOT}" ] ; then ++ export SCOTCH_ARCH_PATH="${SCOTCH_ROOT}" ++else ++ export SCOTCH_VERSION=scotch_6.0.0 ++ export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++fi + + # ----------------------------------------------------------------------------- +diff -ru OpenFOAM-2.2.0.ORIG/etc/config/settings.csh OpenFOAM-2.2.0/etc/config/settings.csh +--- OpenFOAM-2.2.0.ORIG/etc/config/settings.csh 2013-02-07 10:45:26.000000000 +0100 ++++ OpenFOAM-2.2.0/etc/config/settings.csh 2014-07-07 16:36:36.787886558 +0200 @@ -373,7 +373,7 @@ # Communications library # ~~~~~~~~~~~~~~~~~~~~~~ @@ -40,9 +57,9 @@ diff -ru OpenFOAM-2.2.0.orig/etc/config/settings.csh OpenFOAM-2.2.0/etc/config/s switch ("$WM_MPLIB") case SYSTEMOPENMPI: -diff -ru OpenFOAM-2.2.0.orig/etc/config/settings.sh OpenFOAM-2.2.0/etc/config/settings.sh ---- OpenFOAM-2.2.0.orig/etc/config/settings.sh 2013-02-07 10:45:26.000000000 +0100 -+++ OpenFOAM-2.2.0/etc/config/settings.sh 2013-05-15 08:52:51.064830000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/etc/config/settings.sh OpenFOAM-2.2.0/etc/config/settings.sh +--- OpenFOAM-2.2.0.ORIG/etc/config/settings.sh 2013-02-07 10:45:26.000000000 +0100 ++++ OpenFOAM-2.2.0/etc/config/settings.sh 2014-07-07 16:37:43.609738576 +0200 @@ -395,7 +395,7 @@ # Communications library # ~~~~~~~~~~~~~~~~~~~~~~ @@ -52,44 +69,36 @@ diff -ru OpenFOAM-2.2.0.orig/etc/config/settings.sh OpenFOAM-2.2.0/etc/config/se case "$WM_MPLIB" in SYSTEMOPENMPI) -@@ -563,6 +563,21 @@ +@@ -563,6 +563,11 @@ _foamAddPath $MPI_ARCH_PATH/bin64 _foamAddLib $MPI_ARCH_PATH/lib64 ;; + -+IMPI) -+ -+ export MPI_HOME=$EBROOTIMPI/intel64 -+ -+ export MPI_ARCH_PATH=$EBROOTIMPI/intel64 -+ -+ _foamAddPath $MPI_ARCH_PATH/bin -+ -+ _foamAddLib $MPI_ARCH_PATH/lib -+ -+ export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/impi -+ -+;; ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; + *) export FOAM_MPI=dummy ;; -Only in OpenFOAM-2.2.0/etc/config: settings.sh.orig -diff -ru OpenFOAM-2.2.0.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/Make/options ---- OpenFOAM-2.2.0.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2013-01-11 18:31:55.000000000 +0100 -+++ OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/Make/options 2013-05-15 08:52:51.078033000 +0200 -@@ -5,7 +5,7 @@ +diff -ru OpenFOAM-2.2.0.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-2.2.0.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options 2013-01-11 18:31:55.000000000 +0100 ++++ OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/Make/options 2014-07-08 09:13:36.685038094 +0200 +@@ -3,10 +3,8 @@ + + EXE_INC = \ $(PFLAGS) $(PINC) \ - -I$(SCOTCH_ROOT)/include \ +- -I$(SCOTCH_ROOT)/include \ -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ - -I/usr/include/scotch \ -+ -I$(EBROOTSCOTCH)/include \ -I../decompositionMethods/lnInclude LIB_LIBS = \ -diff -ru OpenFOAM-2.2.0.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C ---- OpenFOAM-2.2.0.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2013-01-11 18:31:55.000000000 +0100 -+++ OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2013-05-15 08:52:51.071908000 +0200 +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt +diff -ru OpenFOAM-2.2.0.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-2.2.0.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2013-01-11 18:31:55.000000000 +0100 ++++ OpenFOAM-2.2.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2014-07-07 16:36:36.793886544 +0200 @@ -112,6 +112,8 @@ \*---------------------------------------------------------------------------*/ @@ -109,9 +118,24 @@ diff -ru OpenFOAM-2.2.0.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecom #include "ptscotch.h" } -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c 2013-01-11 18:37:35.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c 2013-05-15 08:52:59.347863000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-2.2.0/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-2.2.0.ORIG/src/parallel/decompose/scotchDecomp/Make/options 2013-01-11 18:31:55.000000000 +0100 ++++ OpenFOAM-2.2.0/src/parallel/decompose/scotchDecomp/Make/options 2014-07-07 16:40:09.581415100 +0200 +@@ -7,10 +7,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/c OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/c 2013-01-11 18:37:35.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c 2014-07-07 16:36:36.795886540 +0200 @@ -2,7 +2,7 @@ cWARN = -Wall @@ -121,9 +145,9 @@ diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c OpenFOAM-2.2.0/wmake/rules include $(RULES)/c$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++ ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c++ 2013-01-11 18:37:35.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++ 2013-05-15 08:52:59.349216000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/c++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/c++ 2013-01-11 18:37:35.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++ 2014-07-07 16:36:36.797886536 +0200 @@ -2,7 +2,7 @@ c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor @@ -133,26 +157,25 @@ diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-2.2.0/wmake/rul include $(RULES)/c++$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.2.0/wmake/rules/linux64Gcc/cOpt ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/cOpt 2013-01-11 18:37:35.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/cOpt 2013-05-15 08:52:59.359146000 +0200 -@@ -1,3 +1,3 @@ - cDBUG = --cOPT = -O3 -+cOPT = $(CFLAGS) - # -fprefetch-loop-arrays -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++Opt ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Gcc/c++Opt 2013-01-11 18:37:35.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++Opt 2013-05-15 08:55:29.630853000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++Opt +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/c++Opt 2013-01-11 18:37:35.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/c++Opt 2014-07-07 16:36:36.800886530 +0200 @@ -1,3 +1,3 @@ c++DBUG = -c++OPT = -O3 +c++OPT = $(CXXFLAGS) # -fprefetch-loop-arrays -Only in OpenFOAM-2.2.0/wmake/rules/linux64Gcc: cOpt.orig -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c OpenFOAM-2.2.0/wmake/rules/linux64Icc/c ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c 2013-01-11 18:37:39.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c 2013-05-15 08:52:59.371329000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.2.0/wmake/rules/linux64Gcc/cOpt +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Gcc/cOpt 2013-01-11 18:37:35.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Gcc/cOpt 2014-07-07 16:36:36.799886532 +0200 +@@ -1,3 +1,3 @@ + cDBUG = +-cOPT = -O3 ++cOPT = $(CFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/c OpenFOAM-2.2.0/wmake/rules/linux64Icc/c +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/c 2013-01-11 18:37:39.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c 2014-07-07 16:36:36.802886524 +0200 @@ -2,7 +2,7 @@ cWARN = @@ -162,9 +185,9 @@ diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c OpenFOAM-2.2.0/wmake/rules include $(RULES)/c$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++ ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c++ 2013-01-11 18:37:39.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++ 2013-05-15 08:52:59.377142000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/c++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++ +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/c++ 2013-01-11 18:37:39.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++ 2014-07-07 16:36:36.804886520 +0200 @@ -2,7 +2,7 @@ c++WARN = -wd327,654,819,1125,1476,1505,1572 @@ -174,17 +197,17 @@ diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c++ OpenFOAM-2.2.0/wmake/rul include $(RULES)/c++$(WM_COMPILE_OPTION) -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/cOpt OpenFOAM-2.2.0/wmake/rules/linux64Icc/cOpt ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/cOpt 2013-01-11 18:37:39.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/cOpt 2013-05-15 08:52:59.383210000 +0200 -@@ -1,2 +1,2 @@ - cDBUG = --cOPT = -O3 -no-prec-div -+cOPT = $(CFLAGS) -diff -ru OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++Opt ---- OpenFOAM-2.2.0.orig/wmake/rules/linux64Icc/c++Opt 2013-01-11 18:37:39.000000000 +0100 -+++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++Opt 2013-05-15 08:52:59.389679000 +0200 +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++Opt +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/c++Opt 2013-01-11 18:37:39.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/c++Opt 2014-07-07 16:36:36.806886516 +0200 @@ -1,2 +1,2 @@ c++DBUG = -c++OPT = -xSSE3 -O2 -no-prec-div +c++OPT = $(CXXFLAGS) +diff -ru OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/cOpt OpenFOAM-2.2.0/wmake/rules/linux64Icc/cOpt +--- OpenFOAM-2.2.0.ORIG/wmake/rules/linux64Icc/cOpt 2013-01-11 18:37:39.000000000 +0100 ++++ OpenFOAM-2.2.0/wmake/rules/linux64Icc/cOpt 2014-07-07 16:36:36.805886518 +0200 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 -no-prec-div ++cOPT = $(CFLAGS) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch new file mode 100644 index 0000000000000000000000000000000000000000..35356f2d178ad9b0abf2f729602c8dd8dd20ab42 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch @@ -0,0 +1,213 @@ +diff -ru OpenFOAM-2.3.0.ORIG/etc/bashrc OpenFOAM-2.3.0/etc/bashrc +--- OpenFOAM-2.3.0.ORIG/etc/bashrc 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/etc/bashrc 2014-07-07 19:13:12.383703455 +0200 +@@ -63,7 +63,7 @@ + + #- Compiler: + # WM_COMPILER = Gcc | Gcc45 | Gcc46 | Gcc47 | Clang | Icc (Intel icc) +-export WM_COMPILER=Gcc ++: ${WM_COMPILER:=Gcc}; export WM_COMPILER + unset WM_COMPILER_ARCH WM_COMPILER_LIB_ARCH + + #- Architecture: +@@ -81,7 +81,7 @@ + #- MPI implementation: + # WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI + # | GAMMA | MPI | QSMPI | SGIMPI +-export WM_MPLIB=OPENMPI ++: ${WM_MPLIB:=OPENMPI}; export WM_MPLIB + + #- Operating System: + # WM_OSTYPE = POSIX | ??? +@@ -115,7 +115,7 @@ + + # Location of third-party software + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +-export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION ++: ${WM_THIRD_PARTY_DIR:=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION}; export WM_THIRD_PARTY_DIR + + # Location of site-specific templates etc + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +diff -ru OpenFOAM-2.3.0.ORIG/etc/config/scotch.sh OpenFOAM-2.3.0/etc/config/scotch.sh +--- OpenFOAM-2.3.0.ORIG/etc/config/scotch.sh 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/etc/config/scotch.sh 2014-07-07 19:13:53.661594218 +0200 +@@ -33,7 +33,11 @@ + # during the wmake process + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_6.0.0 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++if [ -n "${SCOTCH_ROOT}" ] ; then ++ export SCOTCH_ARCH_PATH="${SCOTCH_ROOT}" ++else ++ export SCOTCH_VERSION=scotch_6.0.0 ++ export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++fi + + # ----------------------------------------------------------------------------- +diff -ru OpenFOAM-2.3.0.ORIG/etc/config/settings.csh OpenFOAM-2.3.0/etc/config/settings.csh +--- OpenFOAM-2.3.0.ORIG/etc/config/settings.csh 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/etc/config/settings.csh 2014-07-07 19:13:12.546703024 +0200 +@@ -357,7 +357,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + switch ("$WM_MPLIB") + case SYSTEMOPENMPI: +diff -ru OpenFOAM-2.3.0.ORIG/etc/config/settings.sh OpenFOAM-2.3.0/etc/config/settings.sh +--- OpenFOAM-2.3.0.ORIG/etc/config/settings.sh 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/etc/config/settings.sh 2014-07-07 19:14:29.998498175 +0200 +@@ -374,7 +374,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + case "$WM_MPLIB" in + SYSTEMOPENMPI) +@@ -542,6 +542,11 @@ + _foamAddPath $MPI_ARCH_PATH/bin64 + _foamAddLib $MPI_ARCH_PATH/lib64 + ;; ++ ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; ++ + *) + export FOAM_MPI=dummy + ;; +diff -ru OpenFOAM-2.3.0.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.3.0/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-2.3.0.ORIG/src/parallel/decompose/ptscotchDecomp/Make/options 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/src/parallel/decompose/ptscotchDecomp/Make/options 2014-07-08 09:13:46.321014049 +0200 +@@ -3,10 +3,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt +diff -ru OpenFOAM-2.3.0.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.3.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-2.3.0.ORIG/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2014-07-07 19:13:12.761702455 +0200 +@@ -112,6 +112,8 @@ + + \*---------------------------------------------------------------------------*/ + ++#include "mpi.h" ++ + #include "ptscotchDecomp.H" + #include "addToRunTimeSelectionTable.H" + #include "Time.H" +@@ -121,8 +123,8 @@ + + extern "C" + { +-#include + #include "mpi.h" ++#include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-2.3.0.ORIG/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-2.3.0/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-2.3.0.ORIG/src/parallel/decompose/scotchDecomp/Make/options 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/src/parallel/decompose/scotchDecomp/Make/options 2014-07-07 19:15:52.816279695 +0200 +@@ -7,10 +7,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/c OpenFOAM-2.3.0/wmake/rules/linux64Gcc/c +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/c 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Gcc/c 2014-07-07 19:13:12.799702354 +0200 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/c++ OpenFOAM-2.3.0/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/c++ 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Gcc/c++ 2014-07-07 19:13:12.899702089 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.3.0/wmake/rules/linux64Gcc/c++Opt +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/c++Opt 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Gcc/c++Opt 2014-07-07 19:13:12.964701917 +0200 +@@ -1,3 +1,3 @@ + c++DBUG = +-c++OPT = -O3 ++c++OPT = $(CXXFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.3.0/wmake/rules/linux64Gcc/cOpt +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Gcc/cOpt 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Gcc/cOpt 2014-07-07 19:13:12.931702004 +0200 +@@ -1,3 +1,3 @@ + cDBUG = +-cOPT = -O3 ++cOPT = $(CFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/c OpenFOAM-2.3.0/wmake/rules/linux64Icc/c +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/c 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Icc/c 2014-07-07 19:13:13.000701821 +0200 +@@ -2,7 +2,7 @@ + + cWARN = + +-cc = icc ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/c++ OpenFOAM-2.3.0/wmake/rules/linux64Icc/c++ +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/c++ 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Icc/c++ 2014-07-07 19:13:13.032701737 +0200 +@@ -2,7 +2,7 @@ + + c++WARN = -wd327,525,654,819,1125,1476,1505,1572 + +-CC = icpc -std=c++0x ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.3.0/wmake/rules/linux64Icc/c++Opt +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/c++Opt 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Icc/c++Opt 2014-07-07 19:13:13.153701416 +0200 +@@ -1,2 +1,2 @@ + c++DBUG = +-c++OPT = -xHost -O2 -no-prec-div ++c++OPT = $(CXXFLAGS) +diff -ru OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/cOpt OpenFOAM-2.3.0/wmake/rules/linux64Icc/cOpt +--- OpenFOAM-2.3.0.ORIG/wmake/rules/linux64Icc/cOpt 2014-02-11 12:59:42.000000000 +0100 ++++ OpenFOAM-2.3.0/wmake/rules/linux64Icc/cOpt 2014-07-07 19:13:13.065701649 +0200 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 -no-prec-div ++cOPT = $(CFLAGS) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.0.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.0.1.patch new file mode 100644 index 0000000000000000000000000000000000000000..1ad5da3e10c88add05d5b68af7a3aa17a9fbb0d2 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.0.1.patch @@ -0,0 +1,55 @@ +diff -ru ThirdParty-2.0.1.ORIG/Allwmake ThirdParty-2.0.1/Allwmake +--- ThirdParty-2.0.1.ORIG/Allwmake 2011-08-03 11:45:09.000000000 +0200 ++++ ThirdParty-2.0.1/Allwmake 2014-07-08 00:24:10.576198839 +0200 +@@ -109,12 +109,12 @@ + ;; + + MPICH) +- if [ -r $MPI_ARCH_PATH/lib/libmpich.so ] ++ if [ -r $MPI_ARCH_PATH/lib64/libmpich.so ] + then + echo " have $WM_MPLIB shared library ($FOAM_MPI)" + echo + echo +- elif [ -r $MPI_ARCH_PATH/lib/libmpich.a ] ++ elif [ -r $MPI_ARCH_PATH/lib64/libmpich.a ] + then + echo " have $WM_MPLIB static library ($FOAM_MPI)" + echo +@@ -194,6 +194,13 @@ + echo " scotch header in $SCOTCH_ARCH_PATH/include" + echo " scotch libs in $FOAM_EXT_LIBBIN" + echo ++elif [ -f $SCOTCH_ARCH_PATH/include/scotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.a \) ] ++then ++ echo " scotch header in $SCOTCH_ARCH_PATH/include" ++ echo " scotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -255,6 +262,13 @@ + echo " ptscotch header in $SCOTCH_ARCH_PATH/include/$FOAM_MPI" + echo " ptscotch libs in $FOAM_EXT_LIBBIN/$FOAM_MPI" + echo ++ elif [ -f $SCOTCH_ARCH_PATH/include/ptscotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.a \) ] ++ then ++ echo " ptscotch header in $SCOTCH_ARCH_PATH/include" ++ echo " ptscotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -295,7 +309,7 @@ + fi + + # verify existence of scotch include +- [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h ] || { ++ [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h -o -f $SCOTCH_ARCH_PATH/include/ptscotch.h ] || { + echo + echo " WARNING: required include file 'ptscotch.h' not found!" + echo diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.1.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.1.1.patch index 567e3857874218e44c5afcfe3a8d8b252b332450..a50281d527ae631aa916e6f3b6c0601fbd6ddef1 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.1.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.1.1.patch @@ -1,6 +1,6 @@ diff -ru ThirdParty-2.1.1.ORIG/Allwmake ThirdParty-2.1.1/Allwmake ---- ThirdParty-2.1.1.ORIG/Allwmake 2011-08-15 13:30:50.862605278 +0200 -+++ ThirdParty-2.1.1/Allwmake 2011-08-15 13:31:09.902605278 +0200 +--- ThirdParty-2.1.1.ORIG/Allwmake 2011-12-19 11:45:08.000000000 +0100 ++++ ThirdParty-2.1.1/Allwmake 2014-07-08 00:46:01.362976778 +0200 @@ -109,12 +109,12 @@ ;; @@ -16,3 +16,40 @@ diff -ru ThirdParty-2.1.1.ORIG/Allwmake ThirdParty-2.1.1/Allwmake then echo " have $WM_MPLIB static library ($FOAM_MPI)" echo +@@ -194,6 +194,13 @@ + echo " scotch header in $SCOTCH_ARCH_PATH/include" + echo " scotch libs in $FOAM_EXT_LIBBIN" + echo ++elif [ -f $SCOTCH_ARCH_PATH/include/scotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.a \) ] ++then ++ echo " scotch header in $SCOTCH_ARCH_PATH/include" ++ echo " scotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -255,6 +262,13 @@ + echo " ptscotch header in $SCOTCH_ARCH_PATH/include/$FOAM_MPI" + echo " ptscotch libs in $FOAM_EXT_LIBBIN/$FOAM_MPI" + echo ++ elif [ -f $SCOTCH_ARCH_PATH/include/ptscotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.a \) ] ++ then ++ echo " ptscotch header in $SCOTCH_ARCH_PATH/include" ++ echo " ptscotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -295,7 +309,7 @@ + fi + + # verify existence of scotch include +- [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h ] || { ++ [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h -o -f $SCOTCH_ARCH_PATH/include/ptscotch.h ] || { + echo + echo " WARNING: required include file 'ptscotch.h' not found!" + echo diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.0.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.0.patch index ad8d8ce88a53103f51778ca4663846e404f6a2cc..6ad989c2b83070f6c22a66631160be278378393a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.0.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.0.patch @@ -1,6 +1,6 @@ -diff -ru ThirdParty-2.2.0.orig/Allwmake ThirdParty-2.2.0/Allwmake ---- ThirdParty-2.2.0.orig/Allwmake 2013-03-05 19:09:55.000000000 +0100 -+++ ThirdParty-2.2.0/Allwmake 2013-05-15 09:06:16.834069000 +0200 +diff -ru ThirdParty-2.2.0.ORIG/Allwmake ThirdParty-2.2.0/Allwmake +--- ThirdParty-2.2.0.ORIG/Allwmake 2013-03-05 19:09:55.000000000 +0100 ++++ ThirdParty-2.2.0/Allwmake 2014-07-07 23:12:07.241733644 +0200 @@ -110,12 +110,12 @@ ;; @@ -16,4 +16,40 @@ diff -ru ThirdParty-2.2.0.orig/Allwmake ThirdParty-2.2.0/Allwmake then echo " have $WM_MPLIB static library ($FOAM_MPI)" echo -Only in ThirdParty-2.2.0: Allwmake.orig +@@ -195,6 +195,13 @@ + echo " scotch header in $SCOTCH_ARCH_PATH/include" + echo " scotch libs in $FOAM_EXT_LIBBIN" + echo ++elif [ -f $SCOTCH_ARCH_PATH/include/scotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.a \) ] ++then ++ echo " scotch header in $SCOTCH_ARCH_PATH/include" ++ echo " scotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -256,6 +263,13 @@ + echo " ptscotch header in $SCOTCH_ARCH_PATH/include/$FOAM_MPI" + echo " ptscotch libs in $FOAM_EXT_LIBBIN/$FOAM_MPI" + echo ++ elif [ -f $SCOTCH_ARCH_PATH/include/ptscotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.a \) ] ++ then ++ echo " ptscotch header in $SCOTCH_ARCH_PATH/include" ++ echo " ptscotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -296,7 +310,7 @@ + fi + + # verify existence of scotch include +- [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h ] || { ++ [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h -o -f $SCOTCH_ARCH_PATH/include/ptscotch.h ] || { + echo + echo " WARNING: required include file 'ptscotch.h' not found!" + echo diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.0.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.0.patch new file mode 100644 index 0000000000000000000000000000000000000000..b35a7e8e1d184d45e7450f3891d94178a3af716e --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.0.patch @@ -0,0 +1,55 @@ +diff -ru ThirdParty-2.3.0.ORIG/Allwmake ThirdParty-2.3.0/Allwmake +--- ThirdParty-2.3.0.ORIG/Allwmake 2014-02-06 16:31:37.000000000 +0100 ++++ ThirdParty-2.3.0/Allwmake 2014-07-08 00:32:02.955084962 +0200 +@@ -110,12 +110,12 @@ + ;; + + MPICH) +- if [ -r $MPI_ARCH_PATH/lib/libmpich.so ] ++ if [ -r $MPI_ARCH_PATH/lib64/libmpich.so ] + then + echo " have $WM_MPLIB shared library ($FOAM_MPI)" + echo + echo +- elif [ -r $MPI_ARCH_PATH/lib/libmpich.a ] ++ elif [ -r $MPI_ARCH_PATH/lib64/libmpich.a ] + then + echo " have $WM_MPLIB static library ($FOAM_MPI)" + echo +@@ -195,6 +195,13 @@ + echo " scotch header in $SCOTCH_ARCH_PATH/include" + echo " scotch libs in $FOAM_EXT_LIBBIN" + echo ++elif [ -f $SCOTCH_ARCH_PATH/include/scotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.a \) ] ++then ++ echo " scotch header in $SCOTCH_ARCH_PATH/include" ++ echo " scotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -256,6 +263,13 @@ + echo " ptscotch header in $SCOTCH_ARCH_PATH/include/$FOAM_MPI" + echo " ptscotch libs in $FOAM_EXT_LIBBIN/$FOAM_MPI" + echo ++ elif [ -f $SCOTCH_ARCH_PATH/include/ptscotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.a \) ] ++ then ++ echo " ptscotch header in $SCOTCH_ARCH_PATH/include" ++ echo " ptscotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -296,7 +310,7 @@ + fi + + # verify existence of scotch include +- [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h ] || { ++ [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h -o -f $SCOTCH_ARCH_PATH/include/ptscotch.h ] || { + echo + echo " WARNING: required include file 'ptscotch.h' not found!" + echo diff --git a/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a9e21b8aa37f5f7b062b8184e03a772dbc22bbf --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb @@ -0,0 +1,36 @@ +easyblock = 'CMakeMake' + +name = 'OpenMD' +version = '2.2' + +homepage = 'http://openmd.org' +description = """ +OpenMD is an open source molecular dynamics engine which is capable of efficiently simulating liquids, proteins, +nanoparticles, interfaces, and other complex systems using atom types with orientational degrees of freedom. +""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'usempi': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://openmd.org/releases'] + +builddependencies = [('CMake' , '2.8.12')] + +dependencies = [ + ('Python', '2.7.8'), + ('Perl', '5.20.0'), + ('Doxygen', '1.8.8'), + ('Eigen', '3.2.2'), + ('OpenBabel', '2.3.2', '-Python-2.7.8'), + ('Qhull', '2012.1'), + ('FFTW', '3.3.4'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/openmd', 'lib/libopenmd_core.a'], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0ae135dd9d085bb24388eaf519c2837662de573c --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb @@ -0,0 +1,38 @@ +easyblock = 'CMakeMake' + +name = 'OpenMD' +version = '2.2' + +homepage = 'http://openmd.org' +description = """ +OpenMD is an open source molecular dynamics engine which is capable of efficiently simulating liquids, proteins, +nanoparticles, interfaces, and other complex systems using atom types with orientational degrees of freedom. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'usempi': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://openmd.org/releases'] + +builddependencies = [('CMake' , '2.8.12')] + +dependencies = [ + ('Python', '2.7.8'), + ('Perl', '5.20.0'), + ('Doxygen', '1.8.8'), + ('Eigen', '3.2.2'), + ('OpenBabel', '2.3.2', '-Python-2.7.8'), + ('Qhull', '2012.1'), + ('FFTW', '3.3.4'), + ('zlib', '1.2.8'), +] + +configopts = " -DCMAKE_CXX_FLAGS=\"-DMPICH_IGNORE_CXX_SEEK $CXXFLAGS\" " + +sanity_check_paths = { + 'files': ['bin/openmd', 'lib/libopenmd_core.a'], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb index 6d2e812c6e93edfb7f1d63ab5693141740aa46f1..e568f8411eb1f656a81e3868d9bd8b1aeade2765 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.4.5' versionsuffix = "-no-OFED" @@ -17,7 +19,7 @@ configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "open-pal", "open-rte"]], 'dirs': ["include/openmpi/ompi/mpi/cxx"], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb index 26789b95aeb86b5a3a9ec29f8605b3a2fa2d203c..7a690ab15474dd900e9deca7c7ae1b780c5ab5a6 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.4.5' @@ -21,7 +23,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "open-pal", "open-rte"]], 'dirs': ["include/openmpi/ompi/mpi/cxx"], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb index df8b6e8bef183b9918d965bbedb5266f193181aa..65a5c050096ca1050e7980ecd8114480f0f4d8bd 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.3' @@ -24,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "otfaux", "otf", diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb index ff863200f4b9144e4010fbd142d2421d8e047e47..e8dab7a8ac920e20235e3029bd3ebd7b4730565c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' @@ -25,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb index 053791e834d4592313742a8635bd3f65fb228f42..bd0832e6904fadfc2d301daf98ff5830c3d56aef 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' @@ -25,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..983eb22945063bf4bc7bb4a77f041348e340fd08 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.4' +versionsuffix = '-no-OFED' + +homepage = 'http://www.open-mpi.org/' +description = "The Open MPI Project is an open source MPI-2 implementation." + +toolchain = {'name': 'GCC', 'version': '4.7.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.6.2')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77" ,"mpi_f90", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb index fa3425f1abbafac526869f6f66759cdbb647c89c..1505eba3adae8eeeb734545e3483bba7013e6c08 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' @@ -25,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb index d0eab128c41eb974295e3e048af1bc3e962ebaf4..cbe729175a910a0ee5f797ce40698630fdc3d748 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' @@ -28,7 +30,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", "mpif-mpi-io", "mpi", "mpi_portable_platform"]], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb index ea1c8c999905343c5ca235a51ba0cc93748e5b91..90dc3e34495caafd9ecb1eb1212fe9d483784332 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' versionsuffix = "-no-OFED" @@ -18,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb index 35d42cd257401673be39be121c97ea6859a8d63d..5e9b5fcda835e62b138981267948153f87cccf49 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' versionsuffix = "-no-OFED" @@ -18,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb index fcea0329661239cc1314b3594669c58b269aed26..a0f07149840ee90f6633f0fc0ea7727279295ac7 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' @@ -24,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..6cac76d97d59e0e7575f8b51fb4e11f8cd057013 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' +versionsuffix = '-no-OFED' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +patches = ['OpenMPI-1.6.5-vt_cupti_events.patch'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-hwloc=$EBROOTHWLOC ' + +dependencies = [('hwloc', '1.8.1')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..4cad97973f854659eda9c69b66730f687de18219 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +patches = ['OpenMPI-1.6.5-vt_cupti_events.patch'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-hwloc=$EBROOTHWLOC ' + +dependencies = [('hwloc', '1.8.1')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..fe19ab4c9f963f5484cac1cefd2c7a4ecb7aa32f --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +patches = ['OpenMPI-1.6.5-vt_cupti_events.patch'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-hwloc=$EBROOTHWLOC ' + +dependencies = [('hwloc', '1.8.1')] + +osdependencies = [('libibverbs-dev','libibverbs-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb new file mode 100644 index 0000000000000000000000000000000000000000..905ab460285ece2f5d2b458a3c9ad911ba6cace9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.2.144'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support + +dependencies = [('hwloc', '1.8.1')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", + "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "otfaux", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..4d2c94f271e8b1dc99698983c024d4e67251d9f8 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' +versionsuffix = '-no-OFED' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support + +dependencies = [('hwloc', '1.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", + "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "otfaux", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000000000000000000000000000000000..5164388442874b995fe5ee8232af5d362ca93d35 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support + +dependencies = [('hwloc', '1.9')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", + "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "otfaux", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index 93d3cb6e287b9d1f453b7211605f586eeb634d85..a9ae46a6397b210f7fd1985aaf54f5a31a80f6d7 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = "1.7.3" @@ -9,10 +11,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -builddependencies = [ - ('Automake', '1.14'), - ('Autoconf', '2.69'), -] +patches = ['OpenMPI-%(version)s-vt_cupti_events.patch'] dependencies = [('hwloc', '1.7.2')] @@ -30,8 +29,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", - "mpi", "ompitrace", "open-pal", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb index 240afe49ecdabf3f0d1836f20b7a6eca2354dd5f..5f84390df900df7f8601eeb86b73a04ae7e1c029 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = "1.7.3" @@ -9,10 +11,7 @@ toolchain = {'name': 'gcccuda', 'version': '2.6.10'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -builddependencies = [ - ('Automake', '1.14'), - ('Autoconf', '2.69'), -] +patches = ['OpenMPI-%(version)s-vt_cupti_events.patch'] dependencies = [('hwloc', '1.8')] @@ -30,7 +29,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-vt_cupti_events.patch b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-vt_cupti_events.patch new file mode 100644 index 0000000000000000000000000000000000000000..ee5bc466fc44307f8945601eaf36162d3c797ba9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-vt_cupti_events.patch @@ -0,0 +1,17 @@ +--- openmpi-1.7.3/ompi/contrib/vt/vt/vtlib/vt_cudart.c.orig 2014-09-11 13:02:17.089131966 -0700 ++++ openmpi-1.7.3/ompi/contrib/vt/vt/vtlib/vt_cudart.c 2014-09-11 13:02:41.503307372 -0700 +@@ -2722,13 +2722,13 @@ + /* get an already created unused event */ + kernel->evt = vtDev->evtbuf_pos; + ++#if defined(VT_CUPTI_EVENTS) + if(!vt_cupti_events_enabled){ + /* increment buffers */ + vtDev->evtbuf_pos++; + vtDev->buf_pos += sizeof(VTCUDAKernel); + } + +-#if defined(VT_CUPTI_EVENTS) + + /* zero CUPTI counter */ + if(vt_cupti_events_enabled){ diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..7431826b3c90a7a5cac9154b2da1ee1d29688248 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = "1.8.1" + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.9')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..f9db89a19281355bc859e8e031e2120941b7a73d --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = "1.8.3" + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.0')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb new file mode 100644 index 0000000000000000000000000000000000000000..9beccee04098d661dee87cd402b638db131bced6 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.3' +versionsuffix = '-no-OFED' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000000000000000000000000000000000..23f7fbec5ad354ed95cd81e7bfacf5b50ac89754 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.3' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.9')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..4450b687587ad18320d78b697be8a18e384485fc --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = "1.8.4" + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.1')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..6b3ec45d87a64542e256bab43b47d32899c96bab --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.4' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.0')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..43c4c3d031a981ebc804f6981ca5acf1f9f914fc --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.4' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.10.0')] + +# needed for --with-openib +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb index 5716b4ba8cae85049aa10f2b3d8dcca95439cc6f..07cb82d75cc5bbc0dab4ab21870117fd53a6bd8c 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb index a3b0cd4cae9ac90e2fb476242d41f5f7986a4008..46f7b823540842a229344df529ed52f9bd9a04e0 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb index ed6cdc27e119019ba57e8d5a98e7f54523aed85c..6ae37f3575be15cd22880fb5debc7524b9a797ab 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb index fe5999dc2bf9a2442dfab995be46aabce4336ee5..a26c28e0af5280e27a8610de3a8c420e0085eebf 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb index 459c7147c9e62b1ef005949d1207e6e056dc4946..324c3ec862b28615e208813165f5f7832f1283a8 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-gmpolf-1.4.8.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-gmpolf-1.4.8.eb index a8b1a5e7a91965c7df8ee98de820692924213c96..11891cf96a53c660f01b1e5d473df8d34c6f8604 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-gmpolf-1.4.8.eb @@ -3,8 +3,8 @@ version = '1.0.0' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'gmpolf', 'version': '1.4.8'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goalf-1.1.0-no-OFED.eb index 935411863e24b0dd07a6b23e4a28152e87110ed0..b20db23b0a199eb3bb7b112626cc079e202c6a2f 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goalf-1.1.0-no-OFED.eb @@ -3,7 +3,7 @@ version = '1.0.0' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, - and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goolf-1.4.10.eb index 7996881787eb1aa961c8d6f8779772e953e770ad..db9d43d1ce97db553ba922d1b2ae67cf53f374c0 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.0-goolf-1.4.10.eb @@ -3,8 +3,8 @@ version = '1.0.0' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..413c8374f6b06787c1b94b6d6af34d8dc1600d18 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-GCC-4.8.2.eb @@ -0,0 +1,25 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = ['OpenSSL-1.0.1f-fix_pod_syntax-1.patch'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmpolf-1.1.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..ad1d42662fcacb3271bf9860b90738033bc48cfd --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmpolf-1.1.6.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'cgmpolf', 'version': '1.1.6'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmvolf-1.1.12rc1.eb new file mode 100644 index 0000000000000000000000000000000000000000..533a7cef1c84935ba4d5f7f4426acbe7c89edf9c --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmvolf-1.1.12rc1.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'cgmvolf', 'version': '1.1.12rc1'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmvolf-1.2.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..0a8200f83c179e8ddd8330fdec333e267d7e1aaa --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgmvolf-1.2.7.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'cgmvolf', 'version': '1.2.7'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgoolf-1.1.7.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgoolf-1.1.7.eb new file mode 100644 index 0000000000000000000000000000000000000000..973932317dad7e92c843afb52be4f95313b5c525 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-cgoolf-1.1.7.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'cgoolf', 'version': '1.1.7'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-fix_pod_syntax-1.patch b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-fix_pod_syntax-1.patch new file mode 100644 index 0000000000000000000000000000000000000000..b031ee34afbed4929a1ac30d1003e1c9d974d2ad --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-fix_pod_syntax-1.patch @@ -0,0 +1,376 @@ +see http://www.linuxfromscratch.org/blfs/view/svn/postlfs/openssl.html +Submitted By: Martin Ward +Date: 2013-06-18 +Initial Package Version: 1.0.1e +Upstream Status: Unknown +Origin: self, based on fedora +Description: Fixes install with perl-5.18. + +diff -Naur openssl-1.0.1f.orig/doc/apps/cms.pod openssl-1.0.1f/doc/apps/cms.pod +--- openssl-1.0.1f.orig/doc/apps/cms.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/apps/cms.pod 2014-01-08 11:15:55.799682414 +0100 +@@ -450,28 +450,28 @@ + + =over 4 + +-=item 0 ++=item C<0> + + the operation was completely successfully. + +-=item 1 ++=item C<1> + + an error occurred parsing the command options. + +-=item 2 ++=item C<2> + + one of the input files could not be read. + +-=item 3 ++=item C<3> + + an error occurred creating the CMS file or when reading the MIME + message. + +-=item 4 ++=item C<4> + + an error occurred decrypting or verifying the message. + +-=item 5 ++=item C<5> + + the message was verified correctly but an error occurred writing out + the signers certificates. +diff -Naur openssl-1.0.1f.orig/doc/apps/smime.pod openssl-1.0.1f/doc/apps/smime.pod +--- openssl-1.0.1f.orig/doc/apps/smime.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/apps/smime.pod 2014-01-08 11:15:55.800682414 +0100 +@@ -308,28 +308,28 @@ + + =over 4 + +-=item 0 ++=item C<0> + + the operation was completely successfully. + +-=item 1 ++=item C<1> + + an error occurred parsing the command options. + +-=item 2 ++=item C<2> + + one of the input files could not be read. + +-=item 3 ++=item C<3> + + an error occurred creating the PKCS#7 file or when reading the MIME + message. + +-=item 4 ++=item C<4> + + an error occurred decrypting or verifying the message. + +-=item 5 ++=item C<5> + + the message was verified correctly but an error occurred writing out + the signers certificates. +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_accept.pod openssl-1.0.1f/doc/ssl/SSL_accept.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_accept.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_accept.pod 2014-01-08 11:26:15.045741873 +0100 +@@ -44,13 +44,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The TLS/SSL handshake was not successful but was shut down controlled and + by the specifications of the TLS/SSL protocol. Call SSL_get_error() with the + return value B to find out the reason. + +-=item 1 ++=item C<1> + + The TLS/SSL handshake was successfully completed, a TLS/SSL connection has been + established. +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_clear.pod openssl-1.0.1f/doc/ssl/SSL_clear.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_clear.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_clear.pod 2014-01-08 11:15:55.801682414 +0100 +@@ -56,12 +56,12 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The SSL_clear() operation could not be performed. Check the error stack to + find out the reason. + +-=item 1 ++=item C<1> + + The SSL_clear() operation was successful. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_COMP_add_compression_method.pod openssl-1.0.1f/doc/ssl/SSL_COMP_add_compression_method.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_COMP_add_compression_method.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_COMP_add_compression_method.pod 2014-01-08 11:15:55.801682414 +0100 +@@ -53,11 +53,11 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The operation succeeded. + +-=item 1 ++=item C<1> + + The operation failed. Check the error queue to find out the reason. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_connect.pod openssl-1.0.1f/doc/ssl/SSL_connect.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_connect.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_connect.pod 2014-01-08 11:20:18.289707618 +0100 +@@ -41,13 +41,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The TLS/SSL handshake was not successful but was shut down controlled and + by the specifications of the TLS/SSL protocol. Call SSL_get_error() with the + return value B to find out the reason. + +-=item 1 ++=item C<1> + + The TLS/SSL handshake was successfully completed, a TLS/SSL connection has been + established. +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_CTX_add_session.pod openssl-1.0.1f/doc/ssl/SSL_CTX_add_session.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_CTX_add_session.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_CTX_add_session.pod 2014-01-08 11:15:55.801682414 +0100 +@@ -52,13 +52,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The operation failed. In case of the add operation, it was tried to add + the same (identical) session twice. In case of the remove operation, the + session was not found in the cache. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_CTX_load_verify_locations.pod openssl-1.0.1f/doc/ssl/SSL_CTX_load_verify_locations.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_CTX_load_verify_locations.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_CTX_load_verify_locations.pod 2014-01-08 11:15:55.802682414 +0100 +@@ -100,13 +100,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The operation failed because B and B are NULL or the + processing at one of the locations specified failed. Check the error + stack to find out the reason. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_CTX_set_client_CA_list.pod openssl-1.0.1f/doc/ssl/SSL_CTX_set_client_CA_list.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_CTX_set_client_CA_list.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_CTX_set_client_CA_list.pod 2014-01-08 11:24:12.714730127 +0100 +@@ -66,13 +66,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + A failure while manipulating the STACK_OF(X509_NAME) object occurred or + the X509_NAME could not be extracted from B. Check the error stack + to find out the reason. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_CTX_set_session_id_context.pod openssl-1.0.1f/doc/ssl/SSL_CTX_set_session_id_context.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_CTX_set_session_id_context.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_CTX_set_session_id_context.pod 2014-01-08 11:15:55.802682414 +0100 +@@ -64,13 +64,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The length B of the session id context B exceeded + the maximum allowed length of B. The error + is logged to the error stack. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_CTX_set_ssl_version.pod openssl-1.0.1f/doc/ssl/SSL_CTX_set_ssl_version.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_CTX_set_ssl_version.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_CTX_set_ssl_version.pod 2014-01-08 11:15:55.802682414 +0100 +@@ -42,11 +42,11 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The new choice failed, check the error stack to find out the reason. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_CTX_use_psk_identity_hint.pod openssl-1.0.1f/doc/ssl/SSL_CTX_use_psk_identity_hint.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_CTX_use_psk_identity_hint.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_CTX_use_psk_identity_hint.pod 2014-01-08 11:25:18.820736475 +0100 +@@ -96,7 +98,7 @@ + connection will fail with decryption_error before it will be finished + completely. + +-=item 0 ++=item C<0> + + PSK identity was not found. An "unknown_psk_identity" alert message + will be sent and the connection setup fails. +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_do_handshake.pod openssl-1.0.1f/doc/ssl/SSL_do_handshake.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_do_handshake.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_do_handshake.pod 2014-01-08 11:27:02.937746472 +0100 +@@ -45,13 +45,13 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The TLS/SSL handshake was not successful but was shut down controlled and + by the specifications of the TLS/SSL protocol. Call SSL_get_error() with the + return value B to find out the reason. + +-=item 1 ++=item C<1> + + The TLS/SSL handshake was successfully completed, a TLS/SSL connection has been + established. +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_read.pod openssl-1.0.1f/doc/ssl/SSL_read.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_read.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_read.pod 2014-01-08 11:15:55.802682414 +0100 +@@ -86,7 +86,7 @@ + The read operation was successful; the return value is the number of + bytes actually read from the TLS/SSL connection. + +-=item 0 ++=item C<0> + + The read operation was not successful. The reason may either be a clean + shutdown due to a "close notify" alert sent by the peer (in which case +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_session_reused.pod openssl-1.0.1f/doc/ssl/SSL_session_reused.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_session_reused.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_session_reused.pod 2014-01-08 11:15:55.803682414 +0100 +@@ -27,11 +27,11 @@ + + =over 4 + +-=item 0 ++=item C<0> + + A new session was negotiated. + +-=item 1 ++=item C<1> + + A session was reused. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_set_fd.pod openssl-1.0.1f/doc/ssl/SSL_set_fd.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_set_fd.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_set_fd.pod 2014-01-08 11:15:55.803682414 +0100 +@@ -35,11 +35,11 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The operation failed. Check the error stack to find out why. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_set_session.pod openssl-1.0.1f/doc/ssl/SSL_set_session.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_set_session.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_set_session.pod 2014-01-08 11:15:55.803682414 +0100 +@@ -37,11 +37,11 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The operation failed; check the error stack to find out the reason. + +-=item 1 ++=item C<1> + + The operation succeeded. + +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_shutdown.pod openssl-1.0.1f/doc/ssl/SSL_shutdown.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_shutdown.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_shutdown.pod 2014-01-08 11:21:26.132714132 +0100 +@@ -92,14 +92,14 @@ + + =over 4 + +-=item 0 ++=item C<0> + + The shutdown is not yet finished. Call SSL_shutdown() for a second time, + if a bidirectional shutdown shall be performed. + The output of L may be misleading, as an + erroneous SSL_ERROR_SYSCALL may be flagged even though no error occurred. + +-=item 1 ++=item C<1> + + The shutdown was successfully completed. The "close notify" alert was sent + and the peer's "close notify" alert was received. +diff -Naur openssl-1.0.1f.orig/doc/ssl/SSL_write.pod openssl-1.0.1f/doc/ssl/SSL_write.pod +--- openssl-1.0.1f.orig/doc/ssl/SSL_write.pod 2014-01-06 14:47:42.000000000 +0100 ++++ openssl-1.0.1f/doc/ssl/SSL_write.pod 2014-01-08 11:15:55.803682414 +0100 +@@ -79,7 +79,7 @@ + The write operation was successful, the return value is the number of + bytes actually written to the TLS/SSL connection. + +-=item 0 ++=item C<0> + + The write operation was not successful. Probably the underlying connection + was closed. Call SSL_get_error() with the return value B to find out, diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-gmvolf-1.7.12.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-gmvolf-1.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..707bd90aa333cf0628a58c096021e5358ac9cea6 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-gmvolf-1.7.12.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'gmvolf', 'version': '1.7.12'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-gmvolf-1.7.12rc1.eb new file mode 100644 index 0000000000000000000000000000000000000000..9b0c99840eeaf2df7d8d9f3b22cba107897041dc --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-gmvolf-1.7.12rc1.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'gmvolf', 'version': '1.7.12rc1'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.1.0-no-OFED.eb index 456f22d4c8b1db159b63296aca425d70b148e2fe..1f693bfc6b96124a8ed3708ebb621a40a88342e6 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.1.0-no-OFED.eb @@ -3,7 +3,7 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, - and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} @@ -12,6 +12,8 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] +patches = ['OpenSSL-1.0.1f-fix_pod_syntax-1.patch'] + dependencies = [('zlib', '1.2.7')] # makefile is not suitable for parallel build diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.5.12-no-OFED.eb index ac69ef38a5431186051aa71b9d9430e5088cb2e6..0b7691ae3dda43fce294f27dad9f6eb024f06720 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goalf-1.5.12-no-OFED.eb @@ -3,7 +3,7 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, - and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'goalf', 'version': '1.5.12-no-OFED'} @@ -12,6 +12,8 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] +patches = ['OpenSSL-1.0.1f-fix_pod_syntax-1.patch'] + dependencies = [('zlib', '1.2.7')] # makefile is not suitable for parallel build diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goolf-1.4.10.eb index a894ebdd82c026e309a5b42b1b60440c35710e33..4edbca03d81fc1f9ca8d8b0511a2e4cc0c883f39 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-goolf-1.4.10.eb @@ -3,8 +3,8 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} @@ -12,8 +12,12 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] +patches = ['OpenSSL-1.0.1f-fix_pod_syntax-1.patch'] + dependencies = [('zlib', '1.2.7')] +configopts = "shared no-ssl2 no-ssl3" + # makefile is not suitable for parallel build parallel = 1 runtest = 'test' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-3.2.2.u3.eb new file mode 100644 index 0000000000000000000000000000000000000000..908a9280590a1084db668a5e87263447a8a45f05 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-3.2.2.u3.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = ['OpenSSL-1.0.1f_icc-fixes.patch'] + +dependencies = [('zlib', '1.2.7')] + +# makefile is not suitable for parallel build +parallel = 1 +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.0.6.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.0.6.eb index 1f75edf44c03e854a360c9406d4fea10cf2a6fe7..7029f9790022c774fb6f1ee0b16fbd22e9583495 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.0.6.eb @@ -3,8 +3,8 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} @@ -12,6 +12,8 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] +patches = ['OpenSSL-1.0.1f-fix_pod_syntax-1.patch'] + patches = ['OpenSSL-1.0.1f_icc-fixes.patch'] dependencies = [('zlib', '1.2.7')] diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.1.13.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.1.13.eb index 00fb598e1d1ef7abfb9e61697061f22720eecbfe..4c9a5a74b56bb05f8c2c06d1837b2aee90af85c2 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-4.1.13.eb @@ -3,8 +3,8 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} @@ -12,7 +12,10 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] -patches = ['OpenSSL-1.0.1f_icc-fixes.patch'] +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1f-fix_pod_syntax-1.patch', +] dependencies = [('zlib', '1.2.7')] diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.3.0.eb index 317cd9b4dea4777f61a6558d53c6fe34b2288e60..a9093ec8b33d2dc8fb8b81b2e46b8337388023bd 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.3.0.eb @@ -3,8 +3,8 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} @@ -12,10 +12,15 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] -patches = ['OpenSSL-1.0.1f_icc-fixes.patch'] +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1f-fix_pod_syntax-1.patch', +] dependencies = [('zlib', '1.2.7')] +configopts = "shared no-ssl2 no-ssl3" + # makefile is not suitable for parallel build parallel = 1 runtest = 'test' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.5.0.eb index c755fa9a4a5f6f338c9bc585599bb71578d2bc29..14f3a0762b850929f5201c84a013aee7b6b4062f 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-ictce-5.5.0.eb @@ -3,8 +3,8 @@ version = '1.0.1f' homepage = 'http://www.openssl.org/' description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, -and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) -protocols as well as a full-strength general purpose cryptography library. """ + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} @@ -12,7 +12,10 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.openssl.org/source/'] -patches = ['OpenSSL-1.0.1f_icc-fixes.patch'] +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1f-fix_pod_syntax-1.patch', +] dependencies = [('zlib', '1.2.7')] diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-iqacml-3.7.3.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-iqacml-3.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..5cfad5f0b35c5a405454dec807cd209b7fdba14a --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1f-iqacml-3.7.3.eb @@ -0,0 +1,25 @@ +name = 'OpenSSL' +version = '1.0.1f' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'iqacml', 'version': '3.7.3'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.7')] + +configopts = "shared no-ssl2 no-ssl3" + +# makefile is not suitable for parallel build +parallel = 1 + +# make test yields errors? +#runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1i-fix_parallel_build-1.patch b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1i-fix_parallel_build-1.patch new file mode 100644 index 0000000000000000000000000000000000000000..ca302e6519d630df8442f4d729aa866625e53742 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1i-fix_parallel_build-1.patch @@ -0,0 +1,339 @@ +Submitted By: Armin K. +Date: 2013-05-05 +Initial Package Version: 1.0.1e +Upstream Status: Unknown +Origin: https://github.com/Alexpux/Qt-builds/tree/master/patches/openssl +Description: Fixes build with make -jx, where x is greater than 1. +--- openssl-1.0.1i/crypto/Makefile.orig 2014-08-06 23:18:30.000000000 +0200 ++++ openssl-1.0.1i/crypto/Makefile 2014-08-08 12:41:26.465809686 +0200 +@@ -88,11 +88,11 @@ + @if [ -z "$(THIS)" ]; then $(MAKE) -f $(TOP)/Makefile reflect THIS=$@; fi + + subdirs: +- @target=all; $(RECURSIVE_MAKE) ++ +@target=all; $(RECURSIVE_MAKE) + + files: + $(PERL) $(TOP)/util/files.pl Makefile >> $(TOP)/MINFO +- @target=files; $(RECURSIVE_MAKE) ++ +@target=files; $(RECURSIVE_MAKE) + + links: + @$(PERL) $(TOP)/util/mklink.pl ../include/openssl $(EXHEADER) +@@ -103,7 +103,7 @@ + # lib: $(LIB): are splitted to avoid end-less loop + lib: $(LIB) + @touch lib +-$(LIB): $(LIBOBJ) ++$(LIB): $(LIBOBJ) | subdirs + $(AR) $(LIB) $(LIBOBJ) + [ -z "$(FIPSLIBDIR)" ] || $(AR) $(LIB) $(FIPSLIBDIR)fipscanister.o + $(RANLIB) $(LIB) || echo Never mind. +@@ -114,7 +114,7 @@ + fi + + libs: +- @target=lib; $(RECURSIVE_MAKE) ++ +@target=lib; $(RECURSIVE_MAKE) + + install: + @[ -n "$(INSTALLTOP)" ] # should be set by top Makefile... +@@ -123,7 +123,7 @@ + (cp $$i $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i; \ + chmod 644 $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i ); \ + done; +- @target=install; $(RECURSIVE_MAKE) ++ +@target=install; $(RECURSIVE_MAKE) + + lint: + @target=lint; $(RECURSIVE_MAKE) +--- openssl-1.0.1i/engines/Makefile.orig 2014-08-06 23:18:43.000000000 +0200 ++++ openssl-1.0.1i/engines/Makefile 2014-08-08 12:41:26.465809686 +0200 +@@ -72,7 +72,7 @@ + + all: lib subdirs + +-lib: $(LIBOBJ) ++lib: $(LIBOBJ) | subdirs + @if [ -n "$(SHARED_LIBS)" ]; then \ + set -e; \ + for l in $(LIBNAMES); do \ +@@ -89,7 +89,7 @@ + + subdirs: + echo $(EDIRS) +- @target=all; $(RECURSIVE_MAKE) ++ +@target=all; $(RECURSIVE_MAKE) + + files: + $(PERL) $(TOP)/util/files.pl Makefile >> $(TOP)/MINFO +@@ -128,7 +128,7 @@ + mv -f $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines/$$pfx$$l$$sfx.new $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines/$$pfx$$l$$sfx ); \ + done; \ + fi +- @target=install; $(RECURSIVE_MAKE) ++ +@target=install; $(RECURSIVE_MAKE) + + tags: + ctags $(SRC) +--- openssl-1.0.1i/Makefile.org.orig 2014-08-06 23:10:56.000000000 +0200 ++++ openssl-1.0.1i/Makefile.org 2014-08-08 12:41:26.465809686 +0200 +@@ -273,17 +273,17 @@ + build_libs: build_crypto build_ssl build_engines + + build_crypto: +- @dir=crypto; target=all; $(BUILD_ONE_CMD) +-build_ssl: +- @dir=ssl; target=all; $(BUILD_ONE_CMD) +-build_engines: +- @dir=engines; target=all; $(BUILD_ONE_CMD) +-build_apps: +- @dir=apps; target=all; $(BUILD_ONE_CMD) +-build_tests: +- @dir=test; target=all; $(BUILD_ONE_CMD) +-build_tools: +- @dir=tools; target=all; $(BUILD_ONE_CMD) ++ +@dir=crypto; target=all; $(BUILD_ONE_CMD) ++build_ssl: build_crypto ++ +@dir=ssl; target=all; $(BUILD_ONE_CMD) ++build_engines: build_crypto ++ +@dir=engines; target=all; $(BUILD_ONE_CMD) ++build_apps: build_libs ++ +@dir=apps; target=all; $(BUILD_ONE_CMD) ++build_tests: build_libs ++ +@dir=test; target=all; $(BUILD_ONE_CMD) ++build_tools: build_libs ++ +@dir=tools; target=all; $(BUILD_ONE_CMD) + + all_testapps: build_libs build_testapps + build_testapps: +@@ -538,9 +538,9 @@ + dist_pem_h: + (cd crypto/pem; $(MAKE) -e $(BUILDENV) pem.h; $(MAKE) clean) + +-install: all install_docs install_sw ++install: install_docs install_sw + +-install_sw: ++install_dirs: + @$(PERL) $(TOP)/util/mkdir-p.pl $(INSTALL_PREFIX)$(INSTALLTOP)/bin \ + $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR) \ + $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines \ +@@ -549,12 +549,19 @@ + $(INSTALL_PREFIX)$(OPENSSLDIR)/misc \ + $(INSTALL_PREFIX)$(OPENSSLDIR)/certs \ + $(INSTALL_PREFIX)$(OPENSSLDIR)/private ++ @$(PERL) $(TOP)/util/mkdir-p.pl \ ++ $(INSTALL_PREFIX)$(MANDIR)/man1 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man3 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man5 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man7 ++ ++install_sw: install_dirs + @set -e; headerlist="$(EXHEADER)"; for i in $$headerlist;\ + do \ + (cp $$i $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i; \ + chmod 644 $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i ); \ + done; +- @set -e; target=install; $(RECURSIVE_BUILD_CMD) ++ +@set -e; target=install; $(RECURSIVE_BUILD_CMD) + @set -e; liblist="$(LIBS)"; for i in $$liblist ;\ + do \ + if [ -f "$$i" ]; then \ +@@ -634,12 +641,7 @@ + done; \ + done + +-install_docs: +- @$(PERL) $(TOP)/util/mkdir-p.pl \ +- $(INSTALL_PREFIX)$(MANDIR)/man1 \ +- $(INSTALL_PREFIX)$(MANDIR)/man3 \ +- $(INSTALL_PREFIX)$(MANDIR)/man5 \ +- $(INSTALL_PREFIX)$(MANDIR)/man7 ++install_docs: install_dirs + @pod2man="`cd ./util; ./pod2mantest $(PERL)`"; \ + here="`pwd`"; \ + filecase=; \ +--- openssl-1.0.1i/Makefile.shared.orig 2014-07-22 21:41:23.000000000 +0200 ++++ openssl-1.0.1i/Makefile.shared 2014-08-08 12:41:26.466809666 +0200 +@@ -105,6 +105,7 @@ + SHAREDFLAGS="$${SHAREDFLAGS:-$(CFLAGS) $(SHARED_LDFLAGS)}"; \ + LIBPATH=`for x in $$LIBDEPS; do echo $$x; done | sed -e 's/^ *-L//;t' -e d | uniq`; \ + LIBPATH=`echo $$LIBPATH | sed -e 's/ /:/g'`; \ ++ [ -e $$SHLIB$$SHLIB_SOVER$$SHLIB_SUFFIX ] && exit 0; \ + LD_LIBRARY_PATH=$$LIBPATH:$$LD_LIBRARY_PATH \ + $${SHAREDCMD} $${SHAREDFLAGS} \ + -o $$SHLIB$$SHLIB_SOVER$$SHLIB_SUFFIX \ +@@ -122,6 +123,7 @@ + done; \ + fi; \ + if [ -n "$$SHLIB_SOVER" ]; then \ ++ [ -e "$$SHLIB$$SHLIB_SUFFIX" ] || \ + ( $(SET_X); rm -f $$SHLIB$$SHLIB_SUFFIX; \ + ln -s $$prev $$SHLIB$$SHLIB_SUFFIX ); \ + fi; \ +--- openssl-1.0.1i/test/Makefile.orig 2014-08-06 23:18:45.000000000 +0200 ++++ openssl-1.0.1i/test/Makefile 2014-08-08 12:41:26.466809666 +0200 +@@ -127,7 +127,7 @@ + tags: + ctags $(SRC) + +-tests: exe apps $(TESTS) ++tests: exe $(TESTS) + + apps: + @(cd ..; $(MAKE) DIRS=apps all) +@@ -378,109 +378,109 @@ + link_app.$${shlib_target} + + $(RSATEST)$(EXE_EXT): $(RSATEST).o $(DLIBCRYPTO) +- @target=$(RSATEST); $(BUILD_CMD) ++ +@target=$(RSATEST); $(BUILD_CMD) + + $(BNTEST)$(EXE_EXT): $(BNTEST).o $(DLIBCRYPTO) +- @target=$(BNTEST); $(BUILD_CMD) ++ +@target=$(BNTEST); $(BUILD_CMD) + + $(ECTEST)$(EXE_EXT): $(ECTEST).o $(DLIBCRYPTO) +- @target=$(ECTEST); $(BUILD_CMD) ++ +@target=$(ECTEST); $(BUILD_CMD) + + $(EXPTEST)$(EXE_EXT): $(EXPTEST).o $(DLIBCRYPTO) +- @target=$(EXPTEST); $(BUILD_CMD) ++ +@target=$(EXPTEST); $(BUILD_CMD) + + $(IDEATEST)$(EXE_EXT): $(IDEATEST).o $(DLIBCRYPTO) +- @target=$(IDEATEST); $(BUILD_CMD) ++ +@target=$(IDEATEST); $(BUILD_CMD) + + $(MD2TEST)$(EXE_EXT): $(MD2TEST).o $(DLIBCRYPTO) +- @target=$(MD2TEST); $(BUILD_CMD) ++ +@target=$(MD2TEST); $(BUILD_CMD) + + $(SHATEST)$(EXE_EXT): $(SHATEST).o $(DLIBCRYPTO) +- @target=$(SHATEST); $(BUILD_CMD) ++ +@target=$(SHATEST); $(BUILD_CMD) + + $(SHA1TEST)$(EXE_EXT): $(SHA1TEST).o $(DLIBCRYPTO) +- @target=$(SHA1TEST); $(BUILD_CMD) ++ +@target=$(SHA1TEST); $(BUILD_CMD) + + $(SHA256TEST)$(EXE_EXT): $(SHA256TEST).o $(DLIBCRYPTO) +- @target=$(SHA256TEST); $(BUILD_CMD) ++ +@target=$(SHA256TEST); $(BUILD_CMD) + + $(SHA512TEST)$(EXE_EXT): $(SHA512TEST).o $(DLIBCRYPTO) +- @target=$(SHA512TEST); $(BUILD_CMD) ++ +@target=$(SHA512TEST); $(BUILD_CMD) + + $(RMDTEST)$(EXE_EXT): $(RMDTEST).o $(DLIBCRYPTO) +- @target=$(RMDTEST); $(BUILD_CMD) ++ +@target=$(RMDTEST); $(BUILD_CMD) + + $(MDC2TEST)$(EXE_EXT): $(MDC2TEST).o $(DLIBCRYPTO) +- @target=$(MDC2TEST); $(BUILD_CMD) ++ +@target=$(MDC2TEST); $(BUILD_CMD) + + $(MD4TEST)$(EXE_EXT): $(MD4TEST).o $(DLIBCRYPTO) +- @target=$(MD4TEST); $(BUILD_CMD) ++ +@target=$(MD4TEST); $(BUILD_CMD) + + $(MD5TEST)$(EXE_EXT): $(MD5TEST).o $(DLIBCRYPTO) +- @target=$(MD5TEST); $(BUILD_CMD) ++ +@target=$(MD5TEST); $(BUILD_CMD) + + $(HMACTEST)$(EXE_EXT): $(HMACTEST).o $(DLIBCRYPTO) +- @target=$(HMACTEST); $(BUILD_CMD) ++ +@target=$(HMACTEST); $(BUILD_CMD) + + $(WPTEST)$(EXE_EXT): $(WPTEST).o $(DLIBCRYPTO) +- @target=$(WPTEST); $(BUILD_CMD) ++ +@target=$(WPTEST); $(BUILD_CMD) + + $(RC2TEST)$(EXE_EXT): $(RC2TEST).o $(DLIBCRYPTO) +- @target=$(RC2TEST); $(BUILD_CMD) ++ +@target=$(RC2TEST); $(BUILD_CMD) + + $(BFTEST)$(EXE_EXT): $(BFTEST).o $(DLIBCRYPTO) +- @target=$(BFTEST); $(BUILD_CMD) ++ +@target=$(BFTEST); $(BUILD_CMD) + + $(CASTTEST)$(EXE_EXT): $(CASTTEST).o $(DLIBCRYPTO) +- @target=$(CASTTEST); $(BUILD_CMD) ++ +@target=$(CASTTEST); $(BUILD_CMD) + + $(RC4TEST)$(EXE_EXT): $(RC4TEST).o $(DLIBCRYPTO) +- @target=$(RC4TEST); $(BUILD_CMD) ++ +@target=$(RC4TEST); $(BUILD_CMD) + + $(RC5TEST)$(EXE_EXT): $(RC5TEST).o $(DLIBCRYPTO) +- @target=$(RC5TEST); $(BUILD_CMD) ++ +@target=$(RC5TEST); $(BUILD_CMD) + + $(DESTEST)$(EXE_EXT): $(DESTEST).o $(DLIBCRYPTO) +- @target=$(DESTEST); $(BUILD_CMD) ++ +@target=$(DESTEST); $(BUILD_CMD) + + $(RANDTEST)$(EXE_EXT): $(RANDTEST).o $(DLIBCRYPTO) +- @target=$(RANDTEST); $(BUILD_CMD) ++ +@target=$(RANDTEST); $(BUILD_CMD) + + $(DHTEST)$(EXE_EXT): $(DHTEST).o $(DLIBCRYPTO) +- @target=$(DHTEST); $(BUILD_CMD) ++ +@target=$(DHTEST); $(BUILD_CMD) + + $(DSATEST)$(EXE_EXT): $(DSATEST).o $(DLIBCRYPTO) +- @target=$(DSATEST); $(BUILD_CMD) ++ +@target=$(DSATEST); $(BUILD_CMD) + + $(METHTEST)$(EXE_EXT): $(METHTEST).o $(DLIBCRYPTO) +- @target=$(METHTEST); $(BUILD_CMD) ++ +@target=$(METHTEST); $(BUILD_CMD) + + $(SSLTEST)$(EXE_EXT): $(SSLTEST).o $(DLIBSSL) $(DLIBCRYPTO) +- @target=$(SSLTEST); $(FIPS_BUILD_CMD) ++ +@target=$(SSLTEST); $(FIPS_BUILD_CMD) + + $(ENGINETEST)$(EXE_EXT): $(ENGINETEST).o $(DLIBCRYPTO) +- @target=$(ENGINETEST); $(BUILD_CMD) ++ +@target=$(ENGINETEST); $(BUILD_CMD) + + $(EVPTEST)$(EXE_EXT): $(EVPTEST).o $(DLIBCRYPTO) +- @target=$(EVPTEST); $(BUILD_CMD) ++ +@target=$(EVPTEST); $(BUILD_CMD) + + $(ECDSATEST)$(EXE_EXT): $(ECDSATEST).o $(DLIBCRYPTO) +- @target=$(ECDSATEST); $(BUILD_CMD) ++ +@target=$(ECDSATEST); $(BUILD_CMD) + + $(ECDHTEST)$(EXE_EXT): $(ECDHTEST).o $(DLIBCRYPTO) +- @target=$(ECDHTEST); $(BUILD_CMD) ++ +@target=$(ECDHTEST); $(BUILD_CMD) + + $(IGETEST)$(EXE_EXT): $(IGETEST).o $(DLIBCRYPTO) +- @target=$(IGETEST); $(BUILD_CMD) ++ +@target=$(IGETEST); $(BUILD_CMD) + + $(JPAKETEST)$(EXE_EXT): $(JPAKETEST).o $(DLIBCRYPTO) +- @target=$(JPAKETEST); $(BUILD_CMD) ++ +@target=$(JPAKETEST); $(BUILD_CMD) + + $(ASN1TEST)$(EXE_EXT): $(ASN1TEST).o $(DLIBCRYPTO) +- @target=$(ASN1TEST); $(BUILD_CMD) ++ +@target=$(ASN1TEST); $(BUILD_CMD) + + $(SRPTEST)$(EXE_EXT): $(SRPTEST).o $(DLIBCRYPTO) +- @target=$(SRPTEST); $(BUILD_CMD) ++ +@target=$(SRPTEST); $(BUILD_CMD) + + $(HEARTBEATTEST)$(EXE_EXT): $(HEARTBEATTEST).o $(DLIBCRYPTO) + @target=$(HEARTBEATTEST); $(BUILD_CMD_STATIC) +@@ -496,7 +496,7 @@ + # fi + + dummytest$(EXE_EXT): dummytest.o $(DLIBCRYPTO) +- @target=dummytest; $(BUILD_CMD) ++ +@target=dummytest; $(BUILD_CMD) + + # DO NOT DELETE THIS LINE -- make depend depends on it. + diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1i-intel-2014b.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1i-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d31ac88a20822285eeff010a5090bc31e572e726 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1i-intel-2014b.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1i' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..39a21a3a41719c0ea769008a427ce6fcc4b21e36 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..7815b2d7b3f52b21354e3473baf637754038852d --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ffb667048aa493e58619ca72aba695bf30767ed --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb index f32b55f7b39202bec63bd996191337fccecf315b..1d362a73aed15a463d9bf402da6020b7c43cb33f 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'otcl' version = '1.14' diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb index 3ceaa00f63ecfdf7cfa67895be96637b74283476..0a50c8abb900ab8217b65b783aa90a2096638960 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'otcl' version = '1.14' diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb index a431d1f789f8b0ed67b8a21be499994aeb668837..597dc68acfb27bcf97892d8a8969333a8a619ba9 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'otcl' version = '1.14' diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb index 372a98a691fefc3e3b959b16aa2cdc89414aa716..a3f69b41dfb4e964cab6ef529cb80189d3dc2d9e 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -26,7 +26,7 @@ toolchainopts = {'optarch': False} sources = ['%(namelower)s%(version)s.tgz'] source_urls = ['http://abacus.gene.ucl.ac.uk/software/'] -makeopts = 'CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' start_dir = 'src' files_to_copy = [(["baseml", "basemlg", "codeml", "pamp", "evolver", "yn00", "chi2"], 'bin')] diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb index 92a1c64530ae79a0a07afb474e7a9827e58867d3..5d277564d74812fd54f21d7d5c0cdb6e68ba1136 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # @@ -26,7 +26,7 @@ toolchainopts = {'optarch': False} sources = ['%(namelower)s%(version)s.tgz'] source_urls = ['http://abacus.gene.ucl.ac.uk/software/'] -makeopts = 'CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' start_dir = 'src' files_to_copy = [(["baseml", "basemlg", "codeml", "pamp", "evolver", "yn00", "chi2"], 'bin')] diff --git a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb index d2c97d05e9b56ac1db4040d7773918690be86a1b..fdec406ad1f510de4c6d9b2380fe0d59674aae85 100644 --- a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PANDAseq' version = '2.5' diff --git a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb index 4071617d72fcd77068878e481a25264e6356eb14..c0eaa92772a19de460601ff96603ec8c3c6f84e3 100644 --- a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PANDAseq' version = '2.5' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index d5c57bf57ed4844e1fd88de0797b532f3a31ad0e..4cd82eaeb6c609eea5e0c56e4a2298f7fa30139d 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index d2e670ccbdfa1ae8a90918905b21f1a41ebe8011..6ad4131d3db3006cb92feafcead572e7ef79c840 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index 74cebd43c82fd534805f8310ff4170b0eaa75f5b..7a5c98d762a2fbbb45cb5349f3602ec022da6dc7 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index 1a6f03a8e0d5eee7f62db85b44d9ea5202ccdda7..7dfa97e510fbf8910ebeaa9381d19d9d451781e7 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index b4a46c485210acfc87628aea45f71ae3df72afe6..c8c6b3d56944b914fbfabae888251d8956d374fd 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.2.0' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index 0376287c5ed3cd9c03bbc03e8b3cb06692430ddc..c548c0f167e153eb1d0ba90d5b1a548688f902bc 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.2.0' diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index 4a0122d6ab48cafbb010ae858e5103c2a9c2d2cc..be6e59a2e93efa193ad350e651f28dd23eb2e467 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'PCC' version = '20131024' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb index 8718e93456e53c99e739d621e86669217a284351..e95902eec830e5311c8f31fc5cc59e80c3a0f24f 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb index f5f370eec783d12411c40b41875d5f31d3f8ab14..0f58883e8e531fb7cd723cde2485caf9a0f2e867 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb index 42512f1d0264e60df988fd53d7faa978090d6ec5..ae806687ed93f8f1c9a0bea81b4cda0229ebd9a0 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb index f6289567b4c124ff8f4b42e57968eb09df1c5ce2..0a2a52870426bb96f8de06b8b3f2901c7c58d222 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..82e14a704ffdfc1c9618b6f7667328d829bc7717 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.12' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +configopts = "--with-pic --disable-cpp" + +source_urls = ['http://prdownloads.sourceforge.net/pcre'] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..fd30422f0b8be97036316c25b84dec07a39d5188 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.35' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +configopts = "--with-pic --disable-cpp" + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..64ff0ffd54fd326687b25366e944738e980161f7 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.36' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +configopts = "--with-pic --disable-cpp" + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb index fae4a7ac19c56a57b8983572583239383abb21de..a6ab7c41555ced86b01c011319965f6a703b0fc6 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "PDT" version = "3.19" diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb index d5d52a3127c2a010d4c62e51c4f541c872c9e18a..7faa216ef2db1a4fc8d1759cbca2eeae3c82620a 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "PDT" version = "3.19" diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 85a1bd9f69e841bca6aa9cd44dd38b616535168d..18d3b422b6a7718cb72c366fde3ff5092ae6ac9b 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ ('Hypre', '2.8.0b'), ] -patches = ['fix.patch'] # ignore failed ranlib check on use of '-c' argument +patches = ['PETSc_ranlib-fix.patch'] moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goolf-1.4.10-Python-2.7.3.eb index 1baf49903113430705ce6b0c785bd859ee97c7a0..56139c42c1796d551c735e4fe6beb6cbf07c92b9 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goolf-1.4.10-Python-2.7.3.eb @@ -13,7 +13,7 @@ source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] sources = [SOURCELOWER_TAR_GZ] patches = [ - 'fix.patch', # ignore failed ranlib check on use of '-c' argument + 'PETSc_ranlib-fix.patch', 'PETSc_no-BLACS.patch', ] diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb index f50a77bce8e21e0638d2c245a55baf682e74b29f..268ce3ce62d898cc68255b9f3e823a689729ff15 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ ('Hypre', '2.8.0b'), ] -patches = ['fix.patch'] # ignore failed ranlib check on use of '-c' argument +patches = ['PETSc_ranlib-fix.patch'] moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb index bfddcb713d4dcf2686e2fcf403d6b37cac026cf3..eae0fe6ff43a4c440a4d11886a36ba0a71472043 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb @@ -24,6 +24,6 @@ dependencies = [ ('Hypre', '2.8.0b'), ] -patches = ['fix.patch'] # ignore failed ranlib check on use of '-c' argument +patches = ['PETSc_ranlib-fix.patch'] moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..4cff265549c1762145116e523f795cff5e87feef --- /dev/null +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,35 @@ +name = "PETSc" +version = "3.5.1" +versionsuffix = '-Python-2.7.8' + +homepage = 'http://www.mcs.anl.gov/petsc' +description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution + of scientific applications modeled by partial differential equations.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'PETSc_ranlib-fix.patch', + 'PETSc-%(version)s-zlibfix.patch', +] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +dependencies = [ + ('Boost', '1.55.0', versionsuffix), + ('FIAT', '1.1', versionsuffix), + ('METIS', '5.1.0'), + (parmetis, parmetis_ver), + ('ScientificPython', '2.8.1', versionsuffix), + ('SCOTCH', '6.0.0_esmumps'), + ('SuiteSparse', '4.2.1', '-%s-%s' % (parmetis, parmetis_ver)), + ('Hypre', '2.9.0b'), +] + +builddependencies = [('CMake', '3.0.0')] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-zlibfix.patch b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-zlibfix.patch new file mode 100644 index 0000000000000000000000000000000000000000..6be519b9e0ac681af36f940ae957dc5f28d12311 --- /dev/null +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-zlibfix.patch @@ -0,0 +1,14 @@ +# Solves the problem with zlib. On certain systems binutils issue "no version information available" +# due to easybuild provided zlib. The patch filters out lines contaning "no version information available" +# from stderr in case of ar. PETSc decides based on the extistence of sderr whether a given program failed or not. +# B. Hajgato August 7th 2014 +--- config/BuildSystem/config/setCompilers.py.orig 2014-06-30 20:42:41.000000000 +0200 ++++ config/BuildSystem/config/setCompilers.py 2014-08-07 15:20:31.999008215 +0200 +@@ -1115,6 +1115,7 @@ + arcUnix = os.path.join(self.tmpDir, 'libconf1.a') + arcWindows = os.path.join(self.tmpDir, 'libconf1.lib') + def checkArchive(command, status, output, error): ++ error = '\n'.join([errx for errx in error.split('\n') if "no version information available" not in errx]) + if error or status: + self.logError('archiver', status, output, error) + if os.path.isfile(objName): diff --git a/easybuild/easyconfigs/p/PETSc/fix.patch b/easybuild/easyconfigs/p/PETSc/PETSc_ranlib-fix.patch similarity index 100% rename from easybuild/easyconfigs/p/PETSc/fix.patch rename to easybuild/easyconfigs/p/PETSc/PETSc_ranlib-fix.patch diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb index e943acb2bac5b7c1316ea50adfdb3ed976ac2dc4..608da74a7b7a4b1962e6ea00dc9683eb0975a66c 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb @@ -15,10 +15,16 @@ homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' description = "plink-1.07-src: Whole-genome association analysis toolset" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +dependencies = [('zlib', '1.2.7')] + +buildopts = 'CXX_UNIX="$CXX $CXXFLAGS" WITH_R_PLUGINS=1 WITH_WEBCHECK="" WITH_ZLIB=1 FORCE_DYNAMIC=1' +buildopts += ' WITH_LAPACK=1 LIB_LAPACK="-L$BLAS_LAPACK_LIB_DIR -llapack -lf77blas -latlas -lgfortran"' + files_to_copy = [ (["plink", "gPLINK.jar"], 'bin'), "test.map", diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb index d9aca19bc6b4d383b7584f9697f7ddfc8e6b4cb5..f40f41e97886c6a751c8f13c3ea102dd1418dadc 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb @@ -15,10 +15,16 @@ homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' description = "plink-1.07-src: Whole-genome association analysis toolset" toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'openmp': True} sources = ['%(namelower)s-%(version)s-src.zip'] source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] +dependencies = [('zlib', '1.2.7')] + +buildopts = 'CXX_UNIX="$CXX $CXXFLAGS" WITH_R_PLUGINS=1 WITH_WEBCHECK="" WITH_ZLIB=1' +buildopts += ' WITH_LAPACK=1 FORCE_DYNAMIC=1 LIB_LAPACK=$BLAS_LAPACK_LIB_DIR/libmkl_lapack.a' + files_to_copy = [ (["plink", "gPLINK.jar"], 'bin'), "test.map", diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..9454cdc7820dd24c7fb1243298dede04cc1fbe7f --- /dev/null +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb @@ -0,0 +1,47 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'PLINK' +version = '1.07' + +homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +description = """ PLINK is a free, open-source whole genome association analysis toolset, + designed to perform a range of basic, large-scale analyses in a computationally efficient manner. + The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for + steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). + Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, + annotation and storage of results. """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'openmp': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] + +dependencies = [('zlib', '1.2.8')] + +# plink makefile is a little bit tricky so we pass every options as arguments +# review plink original makefile for details +# if you want "new version check" change to WITH_WEBCHECK="1", but if your compute nodes +# have no internet access better leave it as is +buildopts = ' CXX_UNIX="$CXX $CXXFLAGS" WITH_R_PLUGINS=1 WITH_WEBCHECK="" WITH_ZLIB=1 ' +buildopts += ' WITH_LAPACK=1 FORCE_DYNAMIC=1 LIB_LAPACK=$BLAS_LAPACK_LIB_DIR/libmkl_lapack.a' + +files_to_copy = [ + (["plink", "gPLINK.jar"], 'bin'), + "test.map", + "test.ped", + "COPYING.txt", + "README.txt", +] + +sanity_check_paths = { + 'files': ["bin/plink", "bin/gPLINK.jar", "test.map", "test.ped", "COPYING.txt", "README.txt"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index dedd3bb32d563fe4ef48e4f1ec12f50196bf07d4..061dd6e1103fb5a5224cf5e66dadbcc0082f4f38 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index a795cc27abbff0961455542884c81bab05bbf6d5..84d13bb360ba1326e92b8a7a117d78f21c129a03 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..463e126a1ae7787f4ec56c7ec98397dfb97c69f6 --- /dev/null +++ b/easybuild/easyconfigs/p/PRANK/PRANK-140110-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'PRANK' +version = '140110' + +easyblock = 'MakeCp' + +homepage = 'http://code.google.com/p/prank-msa/' +description = """ PRANK is a probabilistic multiple alignment program for DNA, + codon and amino-acid sequences. PRANK is based on a novel algorithm that treats + insertions correctly and avoids over-estimation of the number of deletion events.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ["http://prank-msa.googlecode.com/files/"] +sources = ['%(namelower)s.source.%(version)s.tgz'] + +# PRANK uses MAFFT as external tool to contruct guide tree +dependencies = [('MAFFT', '7.130', '-with-extensions')] + +start_dir = 'src' + +files_to_copy = [(['prank'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/prank'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..eba092fa74dbff3556a55abdf3f4d868248afbbb --- /dev/null +++ b/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'Pango' +version = '1.36.7' + +homepage = 'http://www.pango.org/' +description = """Pango is a library for laying out and rendering of text, with an emphasis + on internationalization. Pango can be used anywhere that text layout + is needed, though most of the work on Pango so far has been done in + the context of the GTK+ widget toolkit. Pango forms the core of text + and font handling for GTK+-2.x.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://ftp.gnome.org/pub/GNOME/sources/pango/%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('cairo', '1.12.18'), + ('fontconfig', '2.11.1'), + ('freetype', '2.5.3'), + ('GLib', '2.40.0'), + ('HarfBuzz', '0.9.35'), + ('GObject-Introspection', '1.42.0'), +] + +builddependencies = [ + ('M4', '1.4.17'), +] + +sanity_check_paths = { + 'files': ['bin/pango-view', 'lib/libpango-1.0.so', 'lib/libpangocairo-1.0.so', + 'lib/libpangoft2-1.0.so', 'lib/libpangoxft-1.0.so'], + 'dirs': [] +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb index 74416354df979febc5d306530a81edac7ba6845e..692186178b9bbd36123f1e049d102669f6807e67 100644 --- a/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ParFlow' version = '605' @@ -22,7 +24,7 @@ preconfigopts = [ 'cd pftools &&', ] # copies of preconfigopts are required, not references, hence the [:] -premakeopts = preconfigopts[:] +prebuildopts = preconfigopts[:] preinstallopts = preconfigopts[:] configopts = [ @@ -30,7 +32,7 @@ configopts = [ ' --with-amps=mpi1 --enable-timing --with-clm --with-silo=$EBROOTSILO --with-tcl=$EBROOTTCL', ] -makeopts = [ +buildopts = [ 'LDLIBS="$(LDLIBS_EXTRA) -lHYPRE -lsilo -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath"', 'LDLIBS="$(LDLIBS_EXTRA) $(PARFLOW_TOOLS_LIBS) -lsilo -ltcl8.5 -lgfortran -lm -lgcc_s -lgcc -lquadmath"', ] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.2.0-ictce-6.2.5.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.2.0-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..d331f06b60105a6466666ec2886924eeab4a22e5 --- /dev/null +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.2.0-ictce-6.2.5.eb @@ -0,0 +1,22 @@ +name = 'ParMETIS' +version = '3.2.0' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview' +description = """ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, + meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes + routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in + ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning + schemes.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] +sources = ['ParMetis-%(version)s.tar.gz'] + +builddependencies = [('CMake', '2.8.12')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1521fb5934e8030d1b7e0e397ce7c0f61b8bd808 --- /dev/null +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2014b.eb @@ -0,0 +1,22 @@ +name = 'ParMETIS' +version = '4.0.3' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview' +description = """ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, + meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes + routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in + ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning + schemes.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('CMake', '3.0.0')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9212c66919f86d27bdd761deefe96f0056bbc8e5 --- /dev/null +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb @@ -0,0 +1,22 @@ +name = 'ParMETIS' +version = '4.0.3' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview' +description = """ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, + meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes + routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in + ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning + schemes.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('CMake', '3.1.0', '', ('GCC', '4.9.2'))] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb index f7539fdf5a1039bfb53048fd9b2a1913d6cea8ea..f34ede0c9511a222002a84ebb6b3c9cb55ea1c1f 100644 --- a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb @@ -16,7 +16,7 @@ sources = [SOURCE_TAR_GZ] patches = ['ParMGridGen-1.0_malloc_include.patch'] -makeopts = 'parallel CC="$CC" PARCC="$CC" PARLD="$CC" BINDIR="."' +buildopts = 'parallel CC="$CC" PARCC="$CC" PARLD="$CC" COPTIONS="$CFLAGS" LDOPTIONS="$CFLAGS" BINDIR="."' files_to_copy = [ (['MGridGen/Programs/mgridgen', 'ParMGridGen/Programs/parmgridgen'], 'bin'), @@ -24,3 +24,4 @@ files_to_copy = [ (['libmgrid.a', 'libparmgrid.a'], 'lib'), ] +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb index 3085f3e22e9a06aa711a8a7b2c3f7f9101b00785..9e0d4404c2d5f1c535d48662a664857c2df629ef 100644 --- a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb @@ -16,7 +16,7 @@ sources = [SOURCE_TAR_GZ] patches = ['ParMGridGen-1.0_malloc_include.patch'] -makeopts = 'parallel CC="$CC" PARCC="$CC" PARLD="$CC" BINDIR="."' +buildopts = 'parallel CC="$CC" PARCC="$CC" PARLD="$CC" COPTIONS="$CFLAGS" LDOPTIONS="$CFLAGS" BINDIR="."' files_to_copy = [ (['MGridGen/Programs/mgridgen', 'ParMGridGen/Programs/parmgridgen'], 'bin'), @@ -24,3 +24,4 @@ files_to_copy = [ (['libmgrid.a', 'libparmgrid.a'], 'lib'), ] +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..370f2c2b2608fe6b91e7d5cb33fa8b1b19c31f6d --- /dev/null +++ b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'Parallel' +version = '20141122' + +homepage = 'http://savannah.gnu.org/projects/parallel/' +description = """parallel: Build and execute shell commands in parallel""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/parallel'] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sanity_check_paths = { + 'files': ['bin/parallel'], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/Paraview/Paraview-4.1.0-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Paraview/Paraview-4.1.0-gmpolf-1.4.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..88dc62e6bbeacc2a436046568b4db98c4eab1e95 --- /dev/null +++ b/easybuild/easyconfigs/p/Paraview/Paraview-4.1.0-gmpolf-1.4.8.eb @@ -0,0 +1,22 @@ +easyblock = 'CMakeMake' + +name = 'Paraview' +version = '4.1.0' + +homepage = "http://www.paraview.org" +description = "Paraview is a scientific parallel visualizer" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'usempi': True, 'pic': True} + +download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' +source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] +sources = ["ParaView-v%(version)s-source.tar.gz"] + +dependencies = [('Qt','4.8.5')] + +builddependencies = [('CMake', '2.8.10.2')] + +separate_build_dir = True + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Paraview/Paraview-4.1.0-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Paraview/Paraview-4.1.0-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..b01ca7881bc01f2c388844dc8bfd274a1205d627 --- /dev/null +++ b/easybuild/easyconfigs/p/Paraview/Paraview-4.1.0-goolf-1.5.14.eb @@ -0,0 +1,22 @@ +easyblock = 'CMakeMake' + +name = 'Paraview' +version = '4.1.0' + +homepage = "http://www.paraview.org" +description = "Paraview is a scientific parallel visualizer" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'usempi': False, 'pic': True} + +download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' +source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] +sources = ["ParaView-v%(version)s-source.tar.gz"] + +dependencies = [('Qt','4.8.5')] + +builddependencies = [('CMake', '2.8.10.2')] + +separate_build_dir = True + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Perl/BioPerl-1.6.923_remove-broken-tests.patch b/easybuild/easyconfigs/p/Perl/BioPerl-1.6.923_remove-broken-tests.patch new file mode 100644 index 0000000000000000000000000000000000000000..ca28df43f27166e28650b71c2e690eefc086bb93 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/BioPerl-1.6.923_remove-broken-tests.patch @@ -0,0 +1,904 @@ +tests are broken, see https://rt.cpan.org/Public/Bug/Display.html?id=91880 +diff -ruN t.orig/Seq/Seq.t t/Seq/Seq.t +--- t.orig/Seq/Seq.t 2013-12-18 06:12:53.000000000 +0100 ++++ t/Seq/Seq.t 1970-01-01 01:00:00.000000000 +0100 +@@ -1,222 +0,0 @@ +-# -*-Perl-*- Test Harness script for Bioperl +-# $Id$ +- +-use strict; +- +-BEGIN { +- use lib '.'; +- use Bio::Root::Test; +- +- test_begin(-tests => 73); +- +- use_ok('Bio::Seq'); +- use_ok('Bio::Seq::RichSeq'); +- use_ok('Bio::SeqFeature::Generic'); +- use_ok('Bio::Species'); +- use_ok('Bio::Annotation::SimpleValue'); +-} +- +-ok my $seq = Bio::Seq->new(-seq=>'ACTGTGGCGTCAACT', +- -desc=>'Sample Bio::Seq object', +- -alphabet => 'dna', +- -is_circular => 1 +- ); +-isa_ok($seq,"Bio::AnnotatableI"); +- +-ok $seq->is_circular; +-ok not $seq->is_circular(0); +-ok not $seq->is_circular; +- +-my $trunc = $seq->trunc(1,4); +-is $trunc->length, 4, 'truncated sequence length'; +- +-is $trunc->seq, 'ACTG', 'truncated sequence string'; +- +-# test ability to get str function +-is $seq->seq(), 'ACTGTGGCGTCAACT' ; +- +-ok $seq = Bio::Seq->new(-seq=>'actgtggcgtcaact', +- -desc=>'Sample Bio::Seq object', +- -display_id => 'something', +- -accession_number => 'accnum', +- -alphabet => 'dna' ); +- +-is uc $seq->alphabet, 'DNA' , 'alphabet'; +- +-# basic methods +- +-is $seq->id(), 'something', "id"; +-is $seq->accession_number, 'accnum', "accession number"; +-is $seq->subseq(5, 9), 'tggcg', "subseq"; +- +-# check IdentifiableI and DescribableI interfaces +-isa_ok $seq, 'Bio::IdentifiableI'; +-isa_ok $seq, 'Bio::DescribableI'; +-# make sure all methods are implemented +-is $seq->authority("bioperl.org"), "bioperl.org"; +-is $seq->namespace("t"), "t"; +-is $seq->version(0), 0; +-is $seq->lsid_string(), "bioperl.org:t:accnum"; +-is $seq->namespace_string(), "t:accnum.0"; +-is $seq->description(), 'Sample Bio::Seq object'; +-is $seq->display_name(), "something"; +- +-# check that feature accession works regardless of lazy things going on +-is scalar($seq->top_SeqFeatures()), 0; +-is scalar($seq->flush_SeqFeatures()), 0; +- +-my $newfeat = Bio::SeqFeature::Generic->new( -start => 10, +- -end => 12, +- -primary => 'silly', +- -source => 'stuff'); +- +- +-$seq->add_SeqFeature($newfeat); +-is $seq->feature_count, 1; +- +-my $species = Bio::Species->new +- (-verbose => 1, +- -classification => [ qw( sapiens Homo Hominidae +- Catarrhini Primates Eutheria +- Mammalia Vertebrata Chordata +- Metazoa Eukaryota )]); +-$seq->species($species); +-is $seq->species->binomial, 'Homo sapiens'; +-$seq->annotation->add_Annotation('description', +- Bio::Annotation::SimpleValue->new(-value => 'desc-here')); +-my ($descr) = $seq->annotation->get_Annotations('description'); +-is $descr->value(), 'desc-here'; +-is $descr->tagname(), 'description'; +- +-# +-# translation tests +-# +- +-my $trans = $seq->translate(); +-is $trans->seq(), 'TVAST' , 'translated sequence'; +- +-# unambiguous two character codons like 'ACN' and 'GTN' should give out an amino +-# acid ...with the addendum that there should be no assumption by the method +-# to complete the codon unless specified, using the -complete_codons flag. +- +-$seq->seq('ACTGTGGCGTCAACN'); +-$trans = $seq->translate(); +-is $trans->seq(), 'TVAST', 'translated sequence with explicit unambiguous codons'; +- +-$seq->seq('ACTGTGGCGTCAAC'); +-$trans = $seq->translate(); +-is $trans->seq(), 'TVAS', 'translated sequence with unknown unambiguous codons'; +- +-$seq->seq('ACTGTGGCGTCAAC'); +-$trans = $seq->translate(-complete_codons => 1); +-is $trans->seq(), 'TVAST', 'translated sequence with unknown unambiguous codons, completed'; +- +-$seq->seq('ACTGTGGCGTCAACA'); +-$trans = $seq->translate(); +-is $trans->seq(), 'TVAST', 'translated sequence with unambiguous codons'; +- +-$seq->seq('ACTGTGGCGTCAACAG'); +-$trans = $seq->translate(); +-is $trans->seq(), 'TVAST', 'translated sequence with unambiguous codons'; +- +-$seq->seq('ACTGTGGCGTCAACAGT'); +-$trans = $seq->translate(-complete_codons => 1); +-is $trans->seq(), 'TVASTV', 'translated sequence with unknown unambiguous codons, completed'; +- +-$seq->seq('ACTGTGGCGTCAACAGTA'); +-$trans = $seq->translate(); +-is $trans->seq(), 'TVASTV', 'translated sequence with unambiguous codons'; +- +-$seq->seq('AC'); +-is $seq->translate(-complete_codons => 1)->seq , 'T', 'translated sequence with unknown unambiguous codons, completed'; +- +-#difference between the default and full CDS translation +- +-$seq->seq('atgtggtaa'); +-$trans = $seq->translate(); +-is $trans->seq(), 'MW*' , 'translated sequence with stop'; +- +-$seq->seq('atgtggtaa'); +-$trans = $seq->translate(undef,undef,undef,undef,1); +-is $trans->seq(), 'MW', 'translated sequence'; +- +-#frame +-my $string; +-my @frames = (0, 1, 2); +-foreach my $frame (@frames) { +- $string .= $seq->translate(undef, undef, $frame)->seq; +- $string .= $seq->revcom->translate(undef, undef, $frame)->seq; +-} +-is $string, 'MW*LPHCGYHVVTT'; +- +-#Translating with all codon tables using method defaults +-$string = ''; +-my @codontables = qw( 1 2 3 4 5 6 9 10 11 12 13 14 15 16 21 22 23); +-foreach my $ct (@codontables) { +- $string .= $seq->translate(undef, undef, undef, $ct)->seq; +-} +-is $string, 'MW*MW*MW*MW*MW*MWQMW*MW*MW*MW*MW*MWYMW*MW*MW*MW*MW*'; +- +-# CDS translation set to throw an exception for internal stop codons +-$seq->seq('atgtggtaataa'); +-eval { +- $seq->translate(undef, undef, undef, undef, 'CDS' , 'throw'); +-}; +-like ($@, qr/EX/); +- +-$seq->seq('atgtggtaataa'); +-is( $seq->translate('J', '-',)->seq, 'MWJJ'); +- +-# tests for RichSeq +-ok my $richseq = Bio::Seq::RichSeq->new( -seq => 'atgtggtaataa', +- -accession_number => 'AC123', +- -alphabet => 'rna', +- -molecule => 'mRNA', +- -id => 'id1', +- -dates => [ '2001/1/1' ], +- -pid => '887821', +- -keywords => 'JUNK1;JUNK2', +- -division => 'Fungi', +- -secondary_accessions => 'AC1152' ); +- +-is ($richseq->seq, 'atgtggtaataa'); +-is ($richseq->display_id, 'id1'); +-is (($richseq->get_dates)[0], '2001/1/1'); +-is (($richseq->get_secondary_accessions)[0], 'AC1152'); +-is ($richseq->accession_number, 'AC123'); +-is ($richseq->alphabet, 'rna'); +-is ($richseq->molecule, 'mRNA'); +-is ($richseq->pid, 887821); +-is ($richseq->division, 'Fungi'); +-is ($richseq->keywords, 'JUNK1; JUNK2'); +-$richseq->seq_version('2'); +-is ($richseq->seq_version, 2); +- +-# tests for subtle misbehaviors +-$seq = Bio::Seq->new(-primary_id => 'blah', -accession_number => 'foo'); +-is ($seq->accession_number, $seq->primary_seq->accession_number); +-is ($seq->primary_id, $seq->primary_seq->primary_id); +-$seq->accession_number('blurb'); +-$seq->primary_id('bar'); +-is ($seq->accession_number, $seq->primary_seq->accession_number); +-is ($seq->primary_id, $seq->primary_seq->primary_id); +- +- +-# Bug #2864: +- +-$seq = Bio::Seq->new(-display_id => 0, -seq => 'GATC'); +- +-is $seq->display_id, 0, "Bug #2864"; +- +-# transcribe/rev_transcribe +- +-$seq = Bio::Seq->new( -id => 'seq1', -alphabet=>'dna', +- -seq=> 'attTcgcatgT' ); +-ok my $xseq = $seq->transcribe; +-is $xseq->alphabet, 'rna'; +-ok !($xseq->seq =~ /[tT]/); +-is $xseq->seq, 'auuUcgcaugU'; +-ok !$xseq->transcribe; +-ok $seq = $xseq->rev_transcribe; +-is $seq->seq, 'attTcgcatgT'; +-is $seq->alphabet, 'dna'; +diff -ruN t.orig/SeqTools/SeqUtils.t t/SeqTools/SeqUtils.t +--- t.orig/SeqTools/SeqUtils.t 2013-12-18 06:12:53.000000000 +0100 ++++ t/SeqTools/SeqUtils.t 1970-01-01 01:00:00.000000000 +0100 +@@ -1,673 +0,0 @@ +-# -*-Perl-*- Test Harness script for Bioperl +-# $Id$ +- +-use strict; +- +-BEGIN { +- use lib '.'; +-# use List::MoreUtils qw(uniq); +- use Bio::Root::Test; +- +- test_begin(-tests => 133); +- +- use_ok('Bio::PrimarySeq'); +- use_ok('Bio::SeqUtils'); +- use_ok('Bio::LiveSeq::Mutation'); +- use_ok('Bio::SeqFeature::Generic'); +- use_ok('Bio::Annotation::SimpleValue'); +- use_ok('Bio::Annotation::Collection'); +- use_ok('Bio::Annotation::Comment'); +-} +- +-my ($seq, $util, $ascii, $ascii_aa, $ascii3); +- +-# Entire alphabet now IUPAC-endorsed and used in GenBank (Oct 2006) +-$ascii = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ'; +-$ascii_aa = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ'; +- +-$ascii3 = +- 'AlaAsxCysAspGluPheGlyHisIleXleLysLeuMetAsnPylProGlnArgSerThrSecValTrpXaaTyrGlx'; +- +-$seq = Bio::PrimarySeq->new('-seq'=> $ascii, +- '-alphabet'=>'protein', +- '-id'=>'test'); +- +-# one letter amino acid code to three letter code +-ok $util = Bio::SeqUtils->new(); +-is $util->seq3($seq), $ascii3; +- +-#using anonymous hash +-is (Bio::SeqUtils->seq3($seq), $ascii3); +-is (Bio::SeqUtils->seq3($seq, undef, ','), +- 'Ala,Asx,Cys,Asp,Glu,Phe,Gly,His,Ile,Xle,Lys,'. +- 'Leu,Met,Asn,Pyl,Pro,Gln,Arg,Ser,Thr,Sec,Val,Trp,Xaa,Tyr,Glx'); +- +-$seq->seq('asd-KJJK-'); +-is (Bio::SeqUtils->seq3($seq, '-', ':'), +- 'Ala:Ser:Asp:Ter:Lys:Xle:Xle:Lys:Ter'); +- +-# three letter amino acid code to one letter code +-ok (Bio::SeqUtils->seq3in($seq, 'AlaPYHCysAspGlu')); +-is $seq->seq, 'AXCDE'; +-is (Bio::SeqUtils->seq3in($seq, $ascii3)->seq, $ascii_aa); +- +-# +-# Tests for multiframe translations +-# +- +-$seq = Bio::PrimarySeq->new('-seq'=> 'agctgctgatcggattgtgatggctggatggcttgggatgctgg', +- '-alphabet'=>'dna', +- '-id'=>'test2'); +- +-my @a = $util->translate_3frames($seq); +-is scalar @a, 3; +-#foreach $a (@a) { +-# print 'ID: ', $a->id, ' ', $a->seq, "\n"; +-#} +- +-@a = $util->translate_6frames($seq); +-is scalar @a, 6; +-#foreach $a (@a) { +-# print 'ID: ', $a->id, ' ', $a->seq, "\n"; +-#} +- +-# +-# test for valid AA return +-# +- +-my @valid_aa = sort Bio::SeqUtils->valid_aa; +-is(@valid_aa, 27); +-is($valid_aa[1], 'A'); +- +-@valid_aa = sort Bio::SeqUtils->valid_aa(1); +-is(@valid_aa, 27); +-is ($valid_aa[1], 'Arg'); +- +-my %valid_aa = Bio::SeqUtils->valid_aa(2); +-is keys %valid_aa, 54; +-is($valid_aa{'C'}, 'Cys'); +-is( $valid_aa{'Cys'}, 'C'); +- +- +-# +-# Mutate +-# +- +-my $string1 = 'aggt'; +-$seq = Bio::PrimarySeq->new('-seq'=> 'aggt', +- '-alphabet'=>'dna', +- '-id'=>'test3'); +- +-# point +-Bio::SeqUtils->mutate($seq, +- Bio::LiveSeq::Mutation->new(-seq => 'c', +- -pos => 3 +- ) +- ); +-is $seq->seq, 'agct'; +- +-# insertion and deletion +-my @mutations = ( +- Bio::LiveSeq::Mutation->new(-seq => 'tt', +- -pos => 2, +- -len => 0 +- ), +- Bio::LiveSeq::Mutation->new(-pos => 2, +- -len => 2 +- ) +-); +- +-Bio::SeqUtils->mutate($seq, @mutations); +-is $seq->seq, 'agct'; +- +-# insertion to the end of the sequence +-Bio::SeqUtils->mutate($seq, +- Bio::LiveSeq::Mutation->new(-seq => 'aa', +- -pos => 5, +- -len => 0 +- ) +- ); +-is $seq->seq, 'agctaa'; +- +- +- +-# +-# testing Bio::SeqUtils->cat +-# +- +-# PrimarySeqs +- +-my $primseq1 = Bio::PrimarySeq->new(-id => 1, -seq => 'acgt', -description => 'master'); +-my $primseq2 = Bio::PrimarySeq->new(-id => 2, -seq => 'tgca'); +- +-Bio::SeqUtils->cat($primseq1, $primseq2); +-is $primseq1->seq, 'acgttgca'; +-is $primseq1->description, 'master'; +- +-#should work for Bio::LocatableSeq +-#should work for Bio::Seq::MetaI Seqs? +- +- +-# Bio::SeqI +- +-my $seq1 = Bio::Seq->new(-id => 1, -seq => 'aaaa', -description => 'first'); +-my $seq2 = Bio::Seq->new(-id => 2, -seq => 'tttt', -description => 'second'); +-my $seq3 = Bio::Seq->new(-id => 3, -seq => 'cccc', -description => 'third'); +- +- +-# annotations +-my $ac2 = Bio::Annotation::Collection->new(); +-my $simple1 = Bio::Annotation::SimpleValue->new( +- -tagname => 'colour', +- -value => 'blue' +- ), ; +-my $simple2 = Bio::Annotation::SimpleValue->new( +- -tagname => 'colour', +- -value => 'black' +- ), ; +-$ac2->add_Annotation('simple',$simple1); +-$ac2->add_Annotation('simple',$simple2); +-$seq2->annotation($ac2); +- +-my $ac3 = Bio::Annotation::Collection->new(); +-my $simple3 = Bio::Annotation::SimpleValue->new( +- -tagname => 'colour', +- -value => 'red' +- ); +-$ac3->add_Annotation('simple',$simple3); +-$seq3->annotation($ac3); +- +- +-ok (Bio::SeqUtils->cat($seq1, $seq2, $seq3)); +-is $seq1->seq, 'aaaattttcccc'; +-is scalar $seq1->annotation->get_Annotations, 3; +- +- +-# seq features +-my $ft2 = Bio::SeqFeature::Generic->new( -start => 1, +- -end => 4, +- -strand => 1, +- -primary => 'source', +- -tag => {note => 'note2'}, +- ); +- +- +-my $ft3 = Bio::SeqFeature::Generic->new( -start => 3, +- -end => 3, +- -strand => 1, +- -primary => 'hotspot', +- -tag => {note => ['note3a','note3b'], +- comment => 'c1'}, +- ); +- +-$seq2->add_SeqFeature($ft2); +-$seq2->add_SeqFeature($ft3); +- +-my $seq1_length = $seq1->length; +-ok (Bio::SeqUtils->cat($seq1, $seq2)); +-is $seq1->seq, 'aaaattttcccctttt'; +-is scalar $seq1->annotation->get_Annotations, 5; +-is_deeply([uniq_sort(map{$_->get_all_tags}$seq1->get_SeqFeatures)], [sort qw(note comment)], 'cat - has expected tags'); +-is_deeply([sort map{$_->get_tagset_values('note')}$seq1->get_SeqFeatures], [sort qw(note2 note3a note3b)], 'cat - has expected tag values'); +-my @tags; +-lives_ok { +- @tags = map{$_->get_tag_values(q(note))}$seq1->get_SeqFeatures ; +-} 'cat - note tag transfered (no throw)'; +-cmp_ok(scalar(@tags),'==',3, 'cat - note tag values transfered (correct count)') ; +-my ($ft3_precat) = grep ($_->primary_tag eq 'hotspot', $seq2->get_SeqFeatures); +-is ($ft3_precat->start, 3, "get correct start of feature before 'cat'"); +-my ($ft3_cat) = grep ($_->primary_tag eq 'hotspot', $seq1->get_SeqFeatures); +-is ($ft3_cat->start, 3+$seq1_length, "get correct start of feature after 'cat'"); +- +- +-my $protseq = Bio::PrimarySeq->new(-id => 2, -seq => 'MVTF'); # protein seq +- +-throws_ok { +- Bio::SeqUtils->cat($seq1, $protseq); +-} qr/different alphabets:/, 'different alphabets' ; +- +- +-# +-# evolve() +-# +- +-$seq = Bio::PrimarySeq->new('-seq'=> 'aaaaaaaaaa', +- '-id'=>'test'); +- +- +- +-$util = Bio::SeqUtils->new(-verbose => 0); +-ok my $newseq = $util->evolve($seq, 60, 4); +- +-# annotations +- +-$seq2 = Bio::Seq->new(-id => 2, -seq => 'ggttaaaa', -description => 'second'); +-$ac3 = Bio::Annotation::Collection->new(); +-$simple3 = Bio::Annotation::SimpleValue->new( +- -tagname => 'colour', +- -value => 'red' +- ); +-$ac3->add_Annotation('simple',$simple3); +-$seq2->annotation($ac3); +-$ft2 = Bio::SeqFeature::Generic->new( -start => 1, +- -end => 4, +- -strand => 1, +- -primary => 'source', +- -tag => {note => 'note2'}, +- ); +- +- +-$ft3 = Bio::SeqFeature::Generic->new( -start => 5, +- -end => 8, +- -strand => -1, +- -primary => 'hotspot', +- -tag => {note => ['note3a','note3b'], +- comment => 'c1'}, +- ); +- +-my $ft4 = Bio::SeqFeature::Generic->new(-primary => 'CDS'); +-$ft4->location(Bio::Location::Fuzzy->new(-start=>'<1', +- -end=>5, +- -strand=>-1)); +- +-$seq2->add_SeqFeature($ft2); +-$seq2->add_SeqFeature($ft3); +-$seq2->add_SeqFeature($ft4); +- +-my $trunc=Bio::SeqUtils->trunc_with_features($seq2, 2, 7); +-is $trunc->seq, 'gttaaa'; +-my @feat=$trunc->get_SeqFeatures; +-is $feat[0]->location->to_FTstring, '<1..3'; +-is $feat[1]->location->to_FTstring, 'complement(4..>6)'; +-is $feat[2]->location->to_FTstring, 'complement(<1..4)'; +-is_deeply([uniq_sort(map{$_->get_all_tags}$trunc->get_SeqFeatures)], [sort qw(note comment)], 'trunc_with_features - has expected tags'); +-is_deeply([sort map{$_->get_tagset_values('note')}$trunc->get_SeqFeatures], [sort qw(note2 note3a note3b)], 'trunc_with_features - has expected tag values'); +- +-my $revcom=Bio::SeqUtils->revcom_with_features($seq2); +-is $revcom->seq, 'ttttaacc'; +-my ($rf1) = $revcom->get_SeqFeatures('hotspot'); +-is $rf1->primary_tag, $ft3->primary_tag, 'primary_tag matches original feature...'; +-is $rf1->location->to_FTstring, '1..4', 'but tagged sf is now revcom'; +- +-my ($rf2) = $revcom->get_SeqFeatures('source'); +-is $rf2->primary_tag, $ft2->primary_tag, 'primary_tag matches original feature...'; +-is $rf2->location->to_FTstring, 'complement(5..8)', 'but tagged sf is now revcom'; +- +-my ($rf3) = $revcom->get_SeqFeatures('CDS'); +-is $rf3->primary_tag, $ft4->primary_tag, 'primary_tag matches original feature...'; +-is $rf3->location->to_FTstring, '4..>8', 'but tagged sf is now revcom'; +- +-is_deeply([uniq_sort(map{$_->get_all_tags}$revcom->get_SeqFeatures)], [sort qw(note comment)], 'revcom_with_features - has expected tags'); +-is_deeply([sort map{$_->get_tagset_values('note')}$revcom->get_SeqFeatures], [sort qw(note2 note3a note3b)], 'revcom_with_features - has expected tag values'); +-# check circularity +-isnt($revcom->is_circular, 1, 'still not circular'); +-$seq3 = Bio::Seq->new(-id => 3, -seq => 'ggttaaaa', -description => 'third', -is_circular => 1); +-is(Bio::SeqUtils->revcom_with_features($seq3)->is_circular, 1, 'still circular'); +- +- +-# delete, insert and ligate +-# prepare some sequence objects +-my $seq_obj = Bio::Seq->new( +- -seq =>'aaaaaaaaaaccccccccccggggggggggtttttttttt', +- -display_id => 'seq1', +- -desc => 'some sequence for testing' +-); +-my $subfeat1 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'sf1', +- -seq_id => 'seq1', +- -start => 2, +- -end => 12 +-); +- +-my $subfeat2 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'sf2', +- -seq_id => 'seq1', +- -start => 14, +- -end => 16 +-); +-my $subfeat3 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'sf3', +- -seq_id => 'seq1', +- -start => 21, +- -end => 25 +-); +- +-my $composite_feat1 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'comp_feat1', +- -seq_id => 'seq1', +- -start => 2, +- -end => 30 +-); +-my $coll_sf = Bio::Annotation::Collection->new; +-$coll_sf->add_Annotation( +- 'comment', Bio::Annotation::Comment->new( '-text' => 'a comment on sf1') +-); +-$subfeat1->annotation($coll_sf); +- +-$composite_feat1->add_SeqFeature( $subfeat1); +-$composite_feat1->add_SeqFeature( $subfeat2); +-$composite_feat1->add_SeqFeature( $subfeat3); +-my $feature1 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'feat1', +- -seq_id => 'seq1', +- -start => 2, +- -end => 25 +-); +-my $feature2 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'feat2', +- -seq_id => 'seq1', +- -start => 15, +- -end => 25, +- -strand => -1, +-); +-my $feature3 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'feat3', +- -seq_id => 'seq1', +- -start => 30, +- -end => 40 +-); +-my $feature4 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'feat4', +- -seq_id => 'seq1', +- -start => 1, +- -end => 10 +-); +-my $feature5 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'feat5', +- -seq_id => 'seq1', +- -start => 11, +- -end => 20 +-); +- +-my $feature6 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'feat6', +- -seq_id => 'seq1', +- -start => 11, +- -end => 25 +-); +-$seq_obj->add_SeqFeature( $composite_feat1, $feature1, $feature2, $feature3, $feature4, $feature5, $feature6); +- +-my $coll = Bio::Annotation::Collection->new; +-$coll->add_Annotation( +- 'comment', Bio::Annotation::Comment->new( '-text' => 'a comment on the whole sequence') +-); +-$seq_obj->annotation($coll); +- +- +-my $fragment_obj = Bio::Seq->new( +- -seq =>'atatatatat', +- -display_id => 'fragment1', +- -desc => 'some fragment to insert' +-); +-my $frag_feature1 = Bio::SeqFeature::Generic->new( +- -primary_tag => 'frag_feat1', +- -seq_id => 'fragment1', +- -start => 2, +- -end => 4, +- -strand => -1, +-); +-$fragment_obj->add_SeqFeature( $frag_feature1 ); +-my $frag_coll = Bio::Annotation::Collection->new; +-$frag_coll->add_Annotation( +- 'comment', Bio::Annotation::Comment->new( '-text' => 'a comment on the fragment') +-); +-$fragment_obj->annotation($frag_coll); +- +-# delete +-my $product; +-lives_ok( +- sub { +- $product = Bio::SeqUtils->delete( $seq_obj, 11, 20 ); +- }, +- "No error thrown when deleting a segment of the sequence" +-); +- +-my ($seq_obj_comment) = $seq_obj->annotation->get_Annotations('comment'); +-my ($product_comment) = $product->annotation->get_Annotations('comment'); +-is( $seq_obj_comment, $product_comment, 'annotation of whole sequence has been moved to new molecule'); +- +-ok( +- grep ($_ eq 'deletion of 10bp', +- map ($_->get_tag_values('note'), +- grep ($_->primary_tag eq 'misc_feature', $product->get_SeqFeatures) +- ) +- ), +- "the product has an additional 'misc_feature' and the note specifies the lengths of the deletion'" +-); +- +-my ($composite_feat1_del) = grep ($_->primary_tag eq 'comp_feat1', $product->get_SeqFeatures); +-ok ($composite_feat1_del, "The composite feature is still present"); +-isa_ok( $composite_feat1_del, 'Bio::SeqFeature::Generic'); +-isa_ok( $composite_feat1_del->location, 'Bio::Location::Split', "a composite feature that spanned the deletion site has been split up, Location"); +- +-is( $composite_feat1_del->get_SeqFeatures, 2, 'one of the sub-eatures of the composite feature has been deleted completely'); +-my ($subfeat1_del) = grep ($_->primary_tag eq 'sf1', $composite_feat1_del->get_SeqFeatures); +-ok ($subfeat1_del, "sub-feature 1 of the composite feature is still present"); +-is ($subfeat1->end, 12, "the original end of sf1 is 12"); +-is ($subfeat1_del->end, 10, "after deletion, the end of sf1 is 1nt before the deletion site"); +-is ($subfeat1->location->end_pos_type, 'EXACT', 'the original end location of sf1 EXACT'); +- +-my ($subfeat1_comment) = $subfeat1->annotation->get_Annotations('comment'); +-my ($subfeat1_del_comment) = $subfeat1_del->annotation->get_Annotations('comment'); +-is( $subfeat1_comment, $subfeat1_del_comment, 'annotation of subeature 1 has been moved to new molecule'); +- +-my ($feature1_del) = grep ($_->primary_tag eq 'feat1', $product->get_SeqFeatures); +-ok ($feature1_del, "feature1 is till present"); +-isa_ok( $feature1_del->location, 'Bio::Location::Split', 'feature1 location has now been split by the deletion and location object'); +-is( my @feature1_del_sublocs = $feature1_del->location->each_Location, 2, 'feature1 has two locations after the deletion'); +-is( $feature1_del_sublocs[0]->start, 2, 'feature1 start is unaffected by the deletion'); +-is( $feature1_del_sublocs[0]->end, 10, 'feature1 end of first split is 1nt before deletion site'); +-is( $feature1_del_sublocs[1]->start, 11, 'feature1 start of second split is 1nt after deletion site'); +-is( $feature1_del_sublocs[1]->end, 15, 'feature1 end of second split has been adjusted correctly'); +-my @fd1_notes = $feature1_del->get_tag_values('note'); +-is( @fd1_notes,1, 'split feature now has a note'); +-is (shift @fd1_notes, '10bp internal deletion between pos 10 and 11', 'got the expected note about length and position of deletion'); +- +-my ($feature3_del) = grep ($_->primary_tag eq 'feat3', $product->get_SeqFeatures); +-ok ($feature3_del, "feature3 is till present"); +-is_deeply ( [$feature3_del->start, $feature3_del->end], [$feature3->start - 10, $feature3->end - 10], 'a feature downstream of the deletion site is shifted entirely by 10nt to the left'); +- +-my ($feature4_del) = grep ($_->primary_tag eq 'feat4', $product->get_SeqFeatures); +-ok ($feature4_del, "feature4 is till present"); +-is_deeply ( [$feature4_del->start, $feature4_del->end], [$feature4->start, $feature4->end], 'a feature upstream of the deletion site is not repositioned by the deletion'); +- +-my ($feature2_del) = grep ($_->primary_tag eq 'feat2', $product->get_SeqFeatures); +-ok ($feature2_del, "feature2 is till present"); +-is ( $feature2_del->start, 11, 'start pos of a feature that started in the deletion site has been altered accordingly'); +-my @fd2_notes = $feature2_del->get_tag_values('note'); +-is( @fd2_notes,1, 'feature 2 now has a note'); +-is (shift @fd2_notes, "6bp deleted from feature 3' end", "note added to feature2 about deletion at 3' end"); +- +-ok (!grep ($_->primary_tag eq 'feat5', $product->get_SeqFeatures), 'a feature that was completely positioned inside the deletion site is not present on the new molecule'); +- +-my ($feature6_del) = grep ($_->primary_tag eq 'feat6', $product->get_SeqFeatures); +-ok ($feature6_del, "feature6 is till present"); +-is ( $feature6_del->start, 11, 'start pos of a feature that started in the deletion site has been altered accordingly'); +-is ( $feature6_del->end, 15, 'end pos of a feature that started in the deletion site has been altered accordingly'); +- +- +-# insert +-lives_ok( +- sub { +- $product = Bio::SeqUtils->insert( $seq_obj, $fragment_obj, 10 ); +- }, +- "No error thrown when inserting a fragment into recipient sequence" +-); +-($seq_obj_comment) = $seq_obj->annotation->get_Annotations('comment'); +-($product_comment) = $product->annotation->get_Annotations('comment'); +-is( $seq_obj_comment, $product_comment, 'annotation of whole sequence has been moved to new molecule'); +- +-my ($composite_feat1_ins) = grep ($_->primary_tag eq 'comp_feat1', $product->get_SeqFeatures); +-ok ($composite_feat1_ins, "The composite feature is still present"); +-isa_ok( $composite_feat1_ins, 'Bio::SeqFeature::Generic'); +-isa_ok( $composite_feat1_ins->location, 'Bio::Location::Split', "a composite feature that spanned the insertion site has been split up, Location"); +-is( $composite_feat1_ins->get_SeqFeatures, 3, 'all of the parts of the composite feature are still present'); +- +-my ($subfeat1_ins) = grep ($_->primary_tag eq 'sf1', $composite_feat1_ins->get_SeqFeatures); +-ok ($subfeat1_ins, "sub-feature 1 of the composite feature is still present"); +-is ($subfeat1->end, 12, "the original end of sf1 is 12"); +-is ($subfeat1_ins->end, $subfeat1->end + $fragment_obj->length, "after insertion, the end of sf1 has been shifted by the length of the insertion"); +-isa_ok( $subfeat1_ins->location, 'Bio::Location::Split', 'sub-feature 1 (spans insertion site) is now split up and'); +-is_deeply ( +- [$subfeat1->location->end_pos_type, $subfeat1->location->start_pos_type], +- [$subfeat1_ins->location->end_pos_type, $subfeat1_ins->location->start_pos_type], +- 'the start and end position types of sub-feature1 have not changed' +-); +-($subfeat1_comment) = $subfeat1->annotation->get_Annotations('comment'); +-my ($subfeat1_ins_comment) = $subfeat1_ins->annotation->get_Annotations('comment'); +-is( $subfeat1_comment, $subfeat1_ins_comment, 'annotation of subeature 1 has been moved to new molecule'); +-my @sf1ins_notes = $subfeat1_ins->get_tag_values('note'); +-is( @sf1ins_notes,1, 'split feature now has a note'); +-is (shift @sf1ins_notes, '10bp internal insertion between pos 10 and 21', 'got the expected note about length and position of insertion'); +- +-my ($feature3_ins) = grep ($_->primary_tag eq 'feat3', $product->get_SeqFeatures); +-ok ($feature3_ins, "feature3 is till present"); +-is_deeply ( +- [$feature3_ins->start, $feature3_ins->end], +- [$feature3->start + $fragment_obj->length, $feature3->end + $fragment_obj->length], +- 'a feature downstream of the insertion site is shifted entirely to the left by the length of the insertion'); +- +-my ($feature4_ins) = grep ($_->primary_tag eq 'feat4', $product->get_SeqFeatures); +-ok ($feature4_ins, "feature4 is till present"); +-is_deeply ( [$feature4_ins->start, $feature4_ins->end], [$feature4->start, $feature4->end], 'a feature upstream of the insertion site is not repositioned'); +- +-my ($frag_feature1_ins) = grep ($_->primary_tag eq 'frag_feat1', $product->get_SeqFeatures); +-ok( $frag_feature1_ins, 'a feature on the inserted fragment is present on the product molecule'); +-is_deeply ( +- [$frag_feature1_ins->start, $frag_feature1_ins->end], +- [12, 14], +- 'position of the feature on the insert has been adjusted to product coordinates' +-); +-is( $frag_feature1_ins->strand, $frag_feature1->strand, 'strand of the feature on insert has not changed'); +-like( $product->desc, qr/some fragment to insert/, 'desctription of the product contains description of the fragment'); +-like( $product->desc, qr/some sequence for testing/, 'desctription of the product contains description of the recipient'); +- +-ok( +- grep ($_ eq 'inserted fragment', +- map ($_->get_tag_values('note'), +- grep ($_->primary_tag eq 'misc_feature', $product->get_SeqFeatures) +- ) +- ), +- "the product has an additional 'misc_feature' with note='inserted fragment'" +-); +- +-# ligate +-lives_ok( +- sub { +- $product = Bio::SeqUtils->ligate( +- -recipient => $seq_obj, +- -fragment => $fragment_obj, +- -left => 10, +- -right => 31, +- -flip => 1 +- ); +- }, +- "No error thrown using 'ligate' of fragment into recipient" +-); +- +-is ($product->length, 30, 'product has the expected length'); +-is ($product->subseq(11,20), 'atatatatat', 'the sequence of the fragment is inserted into the product'); +- +-my ($inserted_fragment_feature) = grep( +- grep($_ eq 'inserted fragment', $_->get_tag_values('note')), +- grep( $_->has_tag('note'), $product->get_SeqFeatures) +-); +- +-ok($inserted_fragment_feature, 'we have a feature annotating the ligated fragment'); +-is_deeply ( +- [$inserted_fragment_feature->start, $inserted_fragment_feature->end], +- [11, 20], +- 'coordinates of the feature annotating the ligated feature are correct' +-); +- +-my ($fragment_feat_lig) = grep ($_->primary_tag eq 'frag_feat1', $product->get_SeqFeatures); +-ok( $fragment_feat_lig, 'the fragment feature1 is now a feature of the product'); +-is_deeply( [$fragment_feat_lig->start, $fragment_feat_lig->end], [17,19], 'start and end of a feature on the fragment are correct after insertion with "flip" option'); +- +- +-SKIP: { +- skip("Storable::dclone not supported yet for Bio::SeqUtils, see ", 9) if $Bio::Root::Root::CLONE_CLASS eq 'Storable'; +- +- # test clone_obj option (create new objects via clone not 'new') +- my $foo_seq_obj = Bio::Seq::Foo->new( +- -seq =>'aaaaaaaaaaccccccccccggggggggggtttttttttt', +- -display_id => 'seq1', +- -desc => 'some sequence for testing' +- ); +- for ($composite_feat1, $feature1, $feature2, $feature3, $feature4, $feature5) { +- $foo_seq_obj->add_SeqFeature( $_ ); +- } +- $foo_seq_obj->annotation($coll); +- +- dies_ok( +- sub { +- $product = Bio::SeqUtils->delete( $foo_seq_obj, 11, 20, { clone_obj => 0} ); +- }, +- "Trying to delete from an object of a custom Bio::Seq subclass that doesn't allow calling 'new' throws an error" +- ); +- +- lives_ok( +- sub { +- $product = Bio::SeqUtils->delete( $foo_seq_obj, 11, 20, { clone_obj => 1} ); +- }, +- "Deleting from Bio::Seq::Foo does not throw an error when using the 'clone_obj' option to clone instead of calling 'new'" +- ); +- +- isa_ok( $product, 'Bio::Seq::Foo'); +- +- # just repeat some of the tests for the cloned feature +- ok( +- grep ($_ eq 'deletion of 10bp', +- map ($_->get_tag_values('note'), +- grep ($_->primary_tag eq 'misc_feature', $product->get_SeqFeatures) +- ) +- ), +- "the product has an additional 'misc_feature' and the note specifies the lengths of the deletion'" +- ); +- ($composite_feat1_del) = grep ($_->primary_tag eq 'comp_feat1', $product->get_SeqFeatures); +- ok ($composite_feat1_del, "The composite feature is still present"); +- isa_ok( $composite_feat1_del, 'Bio::SeqFeature::Generic'); +- isa_ok( $composite_feat1_del->location, 'Bio::Location::Split', "a composite feature that spanned the deletion site has been split up, Location"); +- +- # ligate with clone_obj +- dies_ok( +- sub { +- $product = Bio::SeqUtils->ligate( +- -recipient => $foo_seq_obj, +- -fragment => $fragment_obj, +- -left => 10, +- -right => 31, +- -flip => 1 +- ); +- }, +- "'ligate' without clone_obj option dies with a Bio::Seq::Foo object that can't call new" +- ); +- +- lives_ok( +- sub { +- $product = Bio::SeqUtils->ligate( +- -recipient => $foo_seq_obj, +- -fragment => $fragment_obj, +- -left => 10, +- -right => 31, +- -flip => 1, +- -clone_obj => 1, +- ); +- }, +- "'ligate' with clone_obj option works with a Bio::Seq::Foo object that can't call new" +- ); +-} +- +-sub uniq_sort { +- my @args = @_; +- my %uniq; +- @args = sort @args; +- @uniq{@args} = (0..$#args); +- return sort {$uniq{$a} <=> $uniq{$b}} keys %uniq; +-} +- +-package Bio::Seq::Foo; +- +-use base 'Bio::Seq'; +- +-sub can_call_new { 0 } diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10.eb index 150aff629b213fc70f7556b08cf1892e952a35e3..92ff8a8bb82d3dee756d429424378eb85c47c46b 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10.eb @@ -14,207 +14,207 @@ runtest = 'test' exts_list = [ ('IO::String', '1.08', { 'source_tmpl': 'IO-String-1.08.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/IO/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('Data::Stag', '0.11', { 'source_tmpl': 'Data-Stag-0.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/CMUNGALL/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], }), ('DB_File', '1.827', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DB_File/PMQS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PM/PMQS/'], }), ('DBI', '1.625', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DBI/TIMB/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], }), ('Bio::Perl', '1.6.901', { 'source_tmpl': 'BioPerl-1.6.901.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'], }), ('Sub::Uplevel', '0.24', { 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/DAGOLDEN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], }), ('Tree::DAG_Node', '1.11', { 'source_tmpl': 'Tree-DAG_Node-1.11.tgz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Tree/RSAVAGE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], }), ('Try::Tiny', '0.12', { 'source_tmpl': 'Try-Tiny-0.12.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DO/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Test::Fatal', '0.010', { 'source_tmpl': 'Test-Fatal-0.010.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Test::Exception', '0.31', { 'source_tmpl': 'Test-Exception-0.31.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/ADIE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], }), ('Test::Warn', '0.24', { 'source_tmpl': 'Test-Warn-0.24.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/CHORNY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], }), ('Test::Requires', '0.06', { 'source_tmpl': 'Test-Requires-0.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/TOKUHIROM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], }), ('Test::Tester', '0.108', { 'source_tmpl': 'Test-Tester-0.108.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/FDALY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], }), ('Params::Util', '1.07', { 'source_tmpl': 'Params-Util-1.07.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Params/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('Sub::Install', '0.926', { 'source_tmpl': 'Sub-Install-0.926.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Data::OptList', '0.107', { 'source_tmpl': 'Data-OptList-0.107.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Sub::Exporter', '0.985', { 'source_tmpl': 'Sub-Exporter-0.985.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Test::Output', '1.01', { 'source_tmpl': 'Test-Output-1.01.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/BDFOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], }), ('Module::Runtime', '0.013', { 'source_tmpl': 'Module-Runtime-0.013.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Module/ZEFRAM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], }), ('Module::Implementation', '0.06', { 'source_tmpl': 'Module-Implementation-0.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Module/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('List::MoreUtils', '0.33', { 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/List/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('Package::DeprecationManager', '0.13', { 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Package/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Dist::CheckConflicts', '0.02', { 'source_tmpl': 'Dist-CheckConflicts-0.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Dist/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Package::Stash', '0.34', { 'source_tmpl': 'Package-Stash-0.34.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Package/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Class::Load', '0.20', { 'source_tmpl': 'Class-Load-0.20.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Class/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('MRO::Compat', '0.12', { 'source_tmpl': 'MRO-Compat-0.12.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/B/BO/BOBTFISH/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], }), ('Sub::Name', '0.05', { 'source_tmpl': 'Sub-Name-0.05.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/FLORA/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], }), ('Eval::Closure', '0.08', { 'source_tmpl': 'Eval-Closure-0.08.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DO/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Sub::Exporter::Progressive', '0.001010', { 'source_tmpl': 'Sub-Exporter-Progressive-0.001010.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/FREW/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], }), ('Devel::GlobalDestruction', '0.11', { 'source_tmpl': 'Devel-GlobalDestruction-0.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Devel/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('boolean', '0.30', { - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/I/IN/INGY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], }), ('Tie::IxHash', '1.23', { 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Tie/CHORNY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], }), ('Moose', '2.0801', { - 'source_urls': ['http://www.cpan.org/modules/by-module/MooseX/ETHER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], }), ('Params::Validate', '1.07', { 'source_tmpl': 'Params-Validate-1.07.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Params/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('DateTime::Locale', '0.45', { 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Class::Singleton', '1.4', { 'source_tmpl': 'Class-Singleton-1.4.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Class/ABW/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], }), ('DateTime::TimeZone', '1.58', { 'source_tmpl': 'DateTime-TimeZone-1.58.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('DateTime', '1.01', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Data::Types', '0.09', { 'source_tmpl': 'Data-Types-0.09.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/DWHEELER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], }), ('DateTime::Tiny', '1.04', { 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('File::Slurp', '9999.19', { 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/File/URI/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], }), ('HTTP::Date', '6.02', { 'source_tmpl': 'HTTP-Date-6.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTTP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('IO::HTML', '1.00', { 'source_tmpl': 'IO-HTML-1.00.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/IO/CJM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], }), ('LWP::MediaTypes', '6.02', { 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/LWP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('URI', '1.60', { - 'source_urls': ['http://www.cpan.org/modules/by-module/URI/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('HTTP::Request', '6.06', { 'source_tmpl': 'HTTP-Message-6.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTTP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('HTML::Tagset', '3.20', { 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTML/PETDANCE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], }), ('HTML::Entities', '3.70', { 'source_tmpl': 'HTML-Parser-3.70.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTML/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('AnyEvent', '7.04', { - 'source_urls': ['http://www.cpan.org/modules/by-module/AnyEvent/MLEHMANN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], }), ('Mouse', '1.05', { - 'source_urls': ['http://www.cpan.org/modules/by-module/MouseX/GFUJI/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], }), ('XML::NamespaceSupport', '1.11', { 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/PERIGRIN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], }), ('XML::SAX::Base', '1.08', { 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/GRANTM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ('XML::SAX', '0.99', { 'source_tmpl': 'XML-SAX-0.99.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/GRANTM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ('Test::Harness', '3.28', { 'source_tmpl': 'Test-Harness-3.28.tar.gz', diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13.eb index 23350aebe104f80e4e32248bf8df5cf07fe7b3ec..de1dbf25caf64a3a004123f1c04dca6ed461f593 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13.eb @@ -14,208 +14,208 @@ runtest = 'test' exts_list = [ ('IO::String', '1.08', { 'source_tmpl': 'IO-String-1.08.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/IO/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('Data::Stag', '0.11', { 'source_tmpl': 'Data-Stag-0.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/CMUNGALL/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], }), ('DB_File', '1.827', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DB_File/PMQS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PM/PMQS/'], }), ('DBI', '1.625', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DBI/TIMB/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], }), ('Bio::Perl', '1.6.901', { 'source_tmpl': 'BioPerl-1.6.901.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'], 'patches': ['BioPerl_disable-broken-test.patch'], }), ('Sub::Uplevel', '0.24', { 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/DAGOLDEN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], }), ('Tree::DAG_Node', '1.11', { 'source_tmpl': 'Tree-DAG_Node-1.11.tgz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Tree/RSAVAGE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], }), ('Try::Tiny', '0.12', { 'source_tmpl': 'Try-Tiny-0.12.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DO/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Test::Fatal', '0.010', { 'source_tmpl': 'Test-Fatal-0.010.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Test::Exception', '0.31', { 'source_tmpl': 'Test-Exception-0.31.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/ADIE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], }), ('Test::Warn', '0.24', { 'source_tmpl': 'Test-Warn-0.24.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/CHORNY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], }), ('Test::Requires', '0.06', { 'source_tmpl': 'Test-Requires-0.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/TOKUHIROM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], }), ('Test::Tester', '0.108', { 'source_tmpl': 'Test-Tester-0.108.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/FDALY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], }), ('Params::Util', '1.07', { 'source_tmpl': 'Params-Util-1.07.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Params/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('Sub::Install', '0.926', { 'source_tmpl': 'Sub-Install-0.926.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Data::OptList', '0.107', { 'source_tmpl': 'Data-OptList-0.107.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Sub::Exporter', '0.985', { 'source_tmpl': 'Sub-Exporter-0.985.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Test::Output', '1.01', { 'source_tmpl': 'Test-Output-1.01.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/BDFOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], }), ('Module::Runtime', '0.013', { 'source_tmpl': 'Module-Runtime-0.013.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Module/ZEFRAM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], }), ('Module::Implementation', '0.06', { 'source_tmpl': 'Module-Implementation-0.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Module/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('List::MoreUtils', '0.33', { 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/List/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('Package::DeprecationManager', '0.13', { 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Package/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Dist::CheckConflicts', '0.02', { 'source_tmpl': 'Dist-CheckConflicts-0.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Dist/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Package::Stash', '0.34', { 'source_tmpl': 'Package-Stash-0.34.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Package/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Class::Load', '0.20', { 'source_tmpl': 'Class-Load-0.20.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Class/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('MRO::Compat', '0.12', { 'source_tmpl': 'MRO-Compat-0.12.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/B/BO/BOBTFISH/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], }), ('Sub::Name', '0.05', { 'source_tmpl': 'Sub-Name-0.05.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/FLORA/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], }), ('Eval::Closure', '0.08', { 'source_tmpl': 'Eval-Closure-0.08.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DO/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Sub::Exporter::Progressive', '0.001010', { 'source_tmpl': 'Sub-Exporter-Progressive-0.001010.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/FREW/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], }), ('Devel::GlobalDestruction', '0.11', { 'source_tmpl': 'Devel-GlobalDestruction-0.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Devel/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('boolean', '0.30', { - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/I/IN/INGY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], }), ('Tie::IxHash', '1.23', { 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Tie/CHORNY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], }), ('Moose', '2.0801', { - 'source_urls': ['http://www.cpan.org/modules/by-module/MooseX/ETHER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], }), ('Params::Validate', '1.07', { 'source_tmpl': 'Params-Validate-1.07.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Params/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('DateTime::Locale', '0.45', { 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Class::Singleton', '1.4', { 'source_tmpl': 'Class-Singleton-1.4.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Class/ABW/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], }), ('DateTime::TimeZone', '1.58', { 'source_tmpl': 'DateTime-TimeZone-1.58.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('DateTime', '1.01', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Data::Types', '0.09', { 'source_tmpl': 'Data-Types-0.09.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/DWHEELER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], }), ('DateTime::Tiny', '1.04', { 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('File::Slurp', '9999.19', { 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/File/URI/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], }), ('HTTP::Date', '6.02', { 'source_tmpl': 'HTTP-Date-6.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTTP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('IO::HTML', '1.00', { 'source_tmpl': 'IO-HTML-1.00.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/IO/CJM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], }), ('LWP::MediaTypes', '6.02', { 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/LWP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('URI', '1.60', { - 'source_urls': ['http://www.cpan.org/modules/by-module/URI/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('HTTP::Request', '6.06', { 'source_tmpl': 'HTTP-Message-6.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTTP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('HTML::Tagset', '3.20', { 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTML/PETDANCE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], }), ('HTML::Entities', '3.70', { 'source_tmpl': 'HTML-Parser-3.70.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTML/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('AnyEvent', '7.04', { - 'source_urls': ['http://www.cpan.org/modules/by-module/AnyEvent/MLEHMANN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], }), ('Mouse', '1.05', { - 'source_urls': ['http://www.cpan.org/modules/by-module/MouseX/GFUJI/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], }), ('XML::NamespaceSupport', '1.11', { 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/PERIGRIN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], }), ('XML::SAX::Base', '1.08', { 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/GRANTM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ('XML::SAX', '0.99', { 'source_tmpl': 'XML-SAX-0.99.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/GRANTM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ] diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-5.3.0.eb index 4669fceaf7e3233a241ffd71afe3ffc22ae34fb9..cca9a5d139c6b4cea293d1cf3639cadb66599ae5 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-5.3.0.eb @@ -17,208 +17,208 @@ runtest = 'test' exts_list = [ ('IO::String', '1.08', { 'source_tmpl': 'IO-String-1.08.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/IO/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('Data::Stag', '0.11', { 'source_tmpl': 'Data-Stag-0.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/CMUNGALL/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], }), ('DB_File', '1.827', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DB_File/PMQS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PM/PMQS/'], }), ('DBI', '1.625', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DBI/TIMB/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], }), ('Bio::Perl', '1.6.901', { 'source_tmpl': 'BioPerl-1.6.901.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Bio/CJFIELDS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'], 'patches': ['BioPerl_disable-broken-test.patch'], }), ('Sub::Uplevel', '0.24', { 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/DAGOLDEN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], }), ('Tree::DAG_Node', '1.11', { 'source_tmpl': 'Tree-DAG_Node-1.11.tgz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Tree/RSAVAGE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], }), ('Try::Tiny', '0.12', { 'source_tmpl': 'Try-Tiny-0.12.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DO/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Test::Fatal', '0.010', { 'source_tmpl': 'Test-Fatal-0.010.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Test::Exception', '0.31', { 'source_tmpl': 'Test-Exception-0.31.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/ADIE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], }), ('Test::Warn', '0.24', { 'source_tmpl': 'Test-Warn-0.24.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/CHORNY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], }), ('Test::Requires', '0.06', { 'source_tmpl': 'Test-Requires-0.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/TOKUHIROM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], }), ('Test::Tester', '0.108', { 'source_tmpl': 'Test-Tester-0.108.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/FDALY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], }), ('Params::Util', '1.07', { 'source_tmpl': 'Params-Util-1.07.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Params/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('Sub::Install', '0.926', { 'source_tmpl': 'Sub-Install-0.926.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Data::OptList', '0.107', { 'source_tmpl': 'Data-OptList-0.107.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Sub::Exporter', '0.985', { 'source_tmpl': 'Sub-Exporter-0.985.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/RJBS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], }), ('Test::Output', '1.01', { 'source_tmpl': 'Test-Output-1.01.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Test/BDFOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], }), ('Module::Runtime', '0.013', { 'source_tmpl': 'Module-Runtime-0.013.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Module/ZEFRAM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], }), ('Module::Implementation', '0.06', { 'source_tmpl': 'Module-Implementation-0.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Module/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('List::MoreUtils', '0.33', { 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/List/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('Package::DeprecationManager', '0.13', { 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Package/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Dist::CheckConflicts', '0.02', { 'source_tmpl': 'Dist-CheckConflicts-0.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Dist/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Package::Stash', '0.34', { 'source_tmpl': 'Package-Stash-0.34.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Package/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Class::Load', '0.20', { 'source_tmpl': 'Class-Load-0.20.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Class/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('MRO::Compat', '0.12', { 'source_tmpl': 'MRO-Compat-0.12.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/B/BO/BOBTFISH/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], }), ('Sub::Name', '0.05', { 'source_tmpl': 'Sub-Name-0.05.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/FLORA/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], }), ('Eval::Closure', '0.08', { 'source_tmpl': 'Eval-Closure-0.08.tar.gz', - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DO/DOY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], }), ('Sub::Exporter::Progressive', '0.001010', { 'source_tmpl': 'Sub-Exporter-Progressive-0.001010.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Sub/FREW/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], }), ('Devel::GlobalDestruction', '0.11', { 'source_tmpl': 'Devel-GlobalDestruction-0.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Devel/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('boolean', '0.30', { - 'source_urls': ['http://search.cpan.org/CPAN/authors/id/I/IN/INGY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], }), ('Tie::IxHash', '1.23', { 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Tie/CHORNY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], }), ('Moose', '2.0801', { - 'source_urls': ['http://www.cpan.org/modules/by-module/MooseX/ETHER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], }), ('Params::Validate', '1.07', { 'source_tmpl': 'Params-Validate-1.07.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Params/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('DateTime::Locale', '0.45', { 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Class::Singleton', '1.4', { 'source_tmpl': 'Class-Singleton-1.4.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Class/ABW/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], }), ('DateTime::TimeZone', '1.58', { 'source_tmpl': 'DateTime-TimeZone-1.58.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('DateTime', '1.01', { - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/DROLSKY/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], }), ('Data::Types', '0.09', { 'source_tmpl': 'Data-Types-0.09.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/Data/DWHEELER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], }), ('DateTime::Tiny', '1.04', { 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/DateTime/ADAMK/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], }), ('File::Slurp', '9999.19', { 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/File/URI/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], }), ('HTTP::Date', '6.02', { 'source_tmpl': 'HTTP-Date-6.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTTP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('IO::HTML', '1.00', { 'source_tmpl': 'IO-HTML-1.00.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/IO/CJM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], }), ('LWP::MediaTypes', '6.02', { 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/LWP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('URI', '1.60', { - 'source_urls': ['http://www.cpan.org/modules/by-module/URI/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('HTTP::Request', '6.06', { 'source_tmpl': 'HTTP-Message-6.06.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTTP/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('HTML::Tagset', '3.20', { 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTML/PETDANCE/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], }), ('HTML::Entities', '3.70', { 'source_tmpl': 'HTML-Parser-3.70.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/HTML/GAAS/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], }), ('AnyEvent', '7.04', { - 'source_urls': ['http://www.cpan.org/modules/by-module/AnyEvent/MLEHMANN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], }), ('Mouse', '1.05', { - 'source_urls': ['http://www.cpan.org/modules/by-module/MouseX/GFUJI/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], }), ('XML::NamespaceSupport', '1.11', { 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/PERIGRIN/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], }), ('XML::SAX::Base', '1.08', { 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/GRANTM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ('XML::SAX', '0.99', { 'source_tmpl': 'XML-SAX-0.99.tar.gz', - 'source_urls': ['http://www.cpan.org/modules/by-module/XML/GRANTM/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ] diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..03576a1d0c768b58ff7482177df9a3c4f64e0676 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb @@ -0,0 +1,368 @@ +name = 'Perl' +version = '5.18.2' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['Perl-5.18.2_exitcode_error.patch'] + +runtest = 'test' + +exts_list = [ + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('DBI', '1.631', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], + }), + ('Module::Build', '0.4205', { + 'source_tmpl': 'Module-Build-0.4205.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Devel::StackTrace', '1.31', { + 'source_tmpl': 'Devel-StackTrace-1.31.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Exception::Class', '1.37', { + 'source_tmpl': 'Exception-Class-1.37.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Tester', '0.109', { + 'source_tmpl': 'Test-Tester-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Deep', '0.112', { + 'source_tmpl': 'Test-Deep-0.112.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Algorithm::Diff', '1.15', { + 'source_tmpl': 'Algorithm-Diff-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/N/NE/NEDKONZ/'], + }), + ('Text::Diff', '1.41', { + 'source_tmpl': 'Text-Diff-1.41.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Differences', '0.61', { + 'source_tmpl': 'Test-Differences-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Sub::Uplevel', '0.24', { + 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Exception', '0.32', { + 'source_tmpl': 'Test-Exception-0.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Test::Most', '0.33', { + 'source_tmpl': 'Test-Most-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('File::Slurp::Tiny', '0.003', { + 'source_tmpl': 'File-Slurp-Tiny-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Tree::DAG_Node', '1.22', { + 'source_tmpl': 'Tree-DAG_Node-1.22.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Try::Tiny', '0.20', { + 'source_tmpl': 'Try-Tiny-0.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Test::Fatal', '0.013', { + 'source_tmpl': 'Test-Fatal-0.013.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Test::Requires', '0.07', { + 'source_tmpl': 'Test-Requires-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Sub::Install', '0.927', { + 'source_tmpl': 'Sub-Install-0.927.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Capture::Tiny', '0.24', { + 'source_tmpl': 'Capture-Tiny-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Module::Implementation', '0.07', { + 'source_tmpl': 'Module-Implementation-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('List::MoreUtils', '0.33', { + 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Package::DeprecationManager', '0.13', { + 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Dist::CheckConflicts', '0.10', { + 'source_tmpl': 'Dist-CheckConflicts-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Package::Stash', '0.36', { + 'source_tmpl': 'Package-Stash-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('TAP::Harness::Env', '3.30', { + 'source_tmpl': 'Test-Harness-3.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.007', { + 'source_tmpl': 'ExtUtils-Config-0.007.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::InstallPaths', '0.010', { + 'source_tmpl': 'ExtUtils-InstallPaths-0.010.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.035', { + 'source_tmpl': 'Module-Build-Tiny-0.035.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Class::Load', '0.21', { + 'source_tmpl': 'Class-Load-0.21.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], + }), + ('Sub::Name', '0.05', { + 'source_tmpl': 'Sub-Name-0.05.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], + }), + ('Eval::Closure', '0.11', { + 'source_tmpl': 'Eval-Closure-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Sub::Exporter::Progressive', '0.0010101', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('Devel::GlobalDestruction', '0.12', { + 'source_tmpl': 'Devel-GlobalDestruction-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('boolean', '0.32', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Class::Load::XS', '0.08', { + 'source_tmpl': 'Class-Load-XS-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Moose', '2.1204', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Params::Validate', '1.08', { + 'source_tmpl': 'Params-Validate-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime::Locale', '0.45', { + 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Singleton', '1.4', { + 'source_tmpl': 'Class-Singleton-1.4.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('DateTime::TimeZone', '1.65', { + 'source_tmpl': 'DateTime-TimeZone-1.65.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime', '1.08', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::HTML', '1.00', { + 'source_tmpl': 'IO-HTML-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('URI', '1.60', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Encode::Locale', '1.03', { + 'source_tmpl': 'Encode-Locale-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Request', '6.06', { + 'source_tmpl': 'HTTP-Message-6.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('AnyEvent', '7.07', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], + }), + ('Devel::CheckCompiler', '0.05', { + 'source_tmpl': 'Devel-CheckCompiler-0.05.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Module::Build::XSUtil', '0.06', { + 'source_tmpl': 'Module-Build-XSUtil-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO/'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('aliased', '0.31', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Exporter::Declare', '0.113', { + 'source_tmpl': 'Exporter-Declare-0.113.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mock::Quick', '1.107', { + 'source_tmpl': 'Mock-Quick-1.107.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mouse', '2.1.0', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('Clone', '0.36', { + 'source_tmpl': 'Clone-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Config::General', '2.52', { + 'source_tmpl': 'Config-General-2.52.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('Font::TTF', '1.04', { + 'source_tmpl': 'Font-TTF-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Math::Round', '0.06', { + 'source_tmpl': 'Math-Round-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Readonly', '1.04', { + 'source_tmpl': 'Readonly-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-2013031301.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Text::Format', '0.59', { + 'source_tmpl': 'Text-Format-0.59.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.18.2_exitcode_error.patch b/easybuild/easyconfigs/p/Perl/Perl-5.18.2_exitcode_error.patch new file mode 100644 index 0000000000000000000000000000000000000000..4014fe6dcf19df41f979e3937c47fec3b021e291 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.18.2_exitcode_error.patch @@ -0,0 +1,99 @@ +--- dist/constant/t/constant.t.orig 2014-01-06 23:46:44.000000000 +0100 ++++ dist/constant/t/constant.t 2014-03-26 17:04:55.898567358 +0100 +@@ -96,7 +96,7 @@ + cmp_ok E2BIG, '==', 7; + # This is something like "Arg list too long", but the actual message + # text may vary, so we can't test much better than this. +-cmp_ok length(E2BIG), '>', 6; ++cmp_ok length(E2BIG), '>=', 1; + + is @warnings, 0 or diag join "\n- ", "unexpected warning:", @warnings; + @warnings = (); # just in case +--- t/op/taint.t.orig 2014-01-06 23:46:46.000000000 +0100 ++++ t/op/taint.t 2014-03-26 17:05:40.949459254 +0100 +@@ -17,7 +17,7 @@ + use strict; + use Config; + +-plan tests => 797; ++plan tests => 796; + + $| = 1; + +@@ -2061,14 +2061,14 @@ + } + + # Bug RT #61976 tainted $! would show numeric rather than string value +- +-{ +- my $tainted_path = substr($^X,0,0) . "/no/such/file"; +- my $err; +- # $! is used in a tainted expression, so gets tainted +- open my $fh, $tainted_path or $err= "$!"; +- unlike($err, qr/^\d+$/, 'tainted $!'); +-} ++# ignore this test ++#{ ++# my $tainted_path = substr($^X,0,0) . "/no/such/file"; ++# my $err; ++# # $! is used in a tainted expression, so gets tainted ++# open my $fh, $tainted_path or $err= "$!"; ++# unlike($err, qr/^\d+$/, 'tainted $!'); ++#} + + { + # #6758: tainted values become untainted in tied hashes +--- t/run/switches.t.orig 2014-03-26 21:07:32.787323422 +0100 ++++ t/run/switches.t 2014-03-26 21:33:29.358963573 +0100 +@@ -11,7 +11,7 @@ + + BEGIN { require "./test.pl"; } + +-plan(tests => 115); ++plan(tests => 114); + + use Config; + use Errno qw(EACCES EISDIR); +@@ -109,24 +109,24 @@ + ); + } + +-{ +- my $tempdir = tempfile; +- mkdir $tempdir, 0700 or die "Can't mkdir '$tempdir': $!"; +- +- local $ENV{'LC_ALL'} = 'C'; # Keep the test simple: expect English +- local $ENV{LANGUAGE} = 'C'; +- setlocale(LC_ALL, "C"); +- +- # Win32 won't let us open the directory, so we never get to die with +- # EISDIR, which happens after open. +- my $error = do { local $! = $^O eq 'MSWin32' ? EACCES : EISDIR; "$!" }; +- like( +- runperl( switches => [ '-c' ], args => [ $tempdir ], stderr => 1), +- qr/Can't open perl script.*$tempdir.*\Q$error/s, +- "RT \#61362: Cannot syntax-check a directory" +- ); +- rmdir $tempdir or die "Can't rmdir '$tempdir': $!"; +-} ++#{ ++# my $tempdir = tempfile; ++# mkdir $tempdir, 0700 or die "Can't mkdir '$tempdir': $!"; ++# ++# local $ENV{'LC_ALL'} = 'C'; # Keep the test simple: expect English ++# local $ENV{LANGUAGE} = 'C'; ++# setlocale(LC_ALL, "C"); ++# ++# # Win32 won't let us open the directory, so we never get to die with ++# # EISDIR, which happens after open. ++# my $error = do { local $! = $^O eq 'MSWin32' ? EACCES : EISDIR; "$!" }; ++# like( ++# runperl( switches => [ '-c' ], args => [ $tempdir ], stderr => 1), ++# qr/Can't open perl script.*$tempdir.*\Q$error/s, ++# "RT \#61362: Cannot syntax-check a directory" ++# ); ++# rmdir $tempdir or die "Can't rmdir '$tempdir': $!"; ++#} + + # Tests for -l + diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..45e359deef3544b7e5390dbcf85a95dfc9d7a053 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0-bare.eb @@ -0,0 +1,16 @@ +name = 'Perl' +version = '5.20.0' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..553ffacec60ff37bbc4ebdb71c4eb9cfd97b18c2 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb @@ -0,0 +1,817 @@ +name = 'Perl' +version = '5.20.0' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [ + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('DBI', '1.631', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], + }), + ('Module::Build', '0.4205', { + 'source_tmpl': 'Module-Build-0.4205.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Devel::StackTrace', '1.32', { + 'source_tmpl': 'Devel-StackTrace-1.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Exception::Class', '1.38', { + 'source_tmpl': 'Exception-Class-1.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Tester', '0.109', { + 'source_tmpl': 'Test-Tester-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Deep', '0.112', { + 'source_tmpl': 'Test-Deep-0.112.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Algorithm::Diff', '1.15', { + 'source_tmpl': 'Algorithm-Diff-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/N/NE/NEDKONZ/'], + }), + ('Text::Diff', '1.41', { + 'source_tmpl': 'Text-Diff-1.41.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Differences', '0.61', { + 'source_tmpl': 'Test-Differences-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Sub::Uplevel', '0.24', { + 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Exception', '0.32', { + 'source_tmpl': 'Test-Exception-0.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Test::Most', '0.33', { + 'source_tmpl': 'Test-Most-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('File::Slurp::Tiny', '0.003', { + 'source_tmpl': 'File-Slurp-Tiny-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Tree::DAG_Node', '1.22', { + 'source_tmpl': 'Tree-DAG_Node-1.22.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Try::Tiny', '0.20', { + 'source_tmpl': 'Try-Tiny-0.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Test::Fatal', '0.013', { + 'source_tmpl': 'Test-Fatal-0.013.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Test::Requires', '0.07', { + 'source_tmpl': 'Test-Requires-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Sub::Install', '0.927', { + 'source_tmpl': 'Sub-Install-0.927.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Capture::Tiny', '0.24', { + 'source_tmpl': 'Capture-Tiny-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Module::Implementation', '0.07', { + 'source_tmpl': 'Module-Implementation-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('List::MoreUtils', '0.33', { + 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Package::DeprecationManager', '0.13', { + 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Package::Stash', '0.36', { + 'source_tmpl': 'Package-Stash-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('TAP::Harness::Env', '3.30', { + 'source_tmpl': 'Test-Harness-3.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.007', { + 'source_tmpl': 'ExtUtils-Config-0.007.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::InstallPaths', '0.010', { + 'source_tmpl': 'ExtUtils-InstallPaths-0.010.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.036', { + 'source_tmpl': 'Module-Build-Tiny-0.036.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Class::Load', '0.21', { + 'source_tmpl': 'Class-Load-0.21.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], + }), + ('Sub::Name', '0.05', { + 'source_tmpl': 'Sub-Name-0.05.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], + }), + ('Eval::Closure', '0.11', { + 'source_tmpl': 'Eval-Closure-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('Devel::GlobalDestruction', '0.12', { + 'source_tmpl': 'Devel-GlobalDestruction-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('boolean', '0.32', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Class::Load::XS', '0.08', { + 'source_tmpl': 'Class-Load-XS-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Moose', '2.1208', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Params::Validate', '1.10', { + 'source_tmpl': 'Params-Validate-1.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime::Locale', '0.45', { + 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Singleton', '1.4', { + 'source_tmpl': 'Class-Singleton-1.4.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('DateTime::TimeZone', '1.70', { + 'source_tmpl': 'DateTime-TimeZone-1.70.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Warnings', '0.014', { + 'source_tmpl': 'Test-Warnings-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('DateTime', '1.10', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::HTML', '1.00', { + 'source_tmpl': 'IO-HTML-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('URI', '1.60', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Encode::Locale', '1.03', { + 'source_tmpl': 'Encode-Locale-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Request', '6.06', { + 'source_tmpl': 'HTTP-Message-6.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('AnyEvent', '7.07', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], + }), + ('Devel::CheckCompiler', '0.05', { + 'source_tmpl': 'Devel-CheckCompiler-0.05.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY/'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Module::Build::XSUtil', '0.10', { + 'source_tmpl': 'Module-Build-XSUtil-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO/'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('aliased', '0.31', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Exporter::Declare', '0.113', { + 'source_tmpl': 'Exporter-Declare-0.113.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mock::Quick', '1.107', { + 'source_tmpl': 'Mock-Quick-1.107.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::LeakTrace', '0.14', { + 'source_tmpl': 'Test-LeakTrace-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('Mouse', '2.3.0', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + 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['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('File::Find::Rule::Perl', '1.13', { + 'source_tmpl': 'File-Find-Rule-Perl-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Version', '1.002004', { + 'source_tmpl': 'Test-Version-1.002004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/X/XE/XENO/'], + }), + ('Test::Harness', '3.32', { + 'source_tmpl': 'Test-Harness-3.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Import::Into', '1.002004', { + 'source_tmpl': 'Import-Into-1.002004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': 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['http://cpan.metacpan.org/authors/id/B/BL/BLOONIX/'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('DBIx::Admin::TableInfo', '2.11', { + 'source_tmpl': 'DBIx-Admin-TableInfo-2.11.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Carp', '1.3301', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Exporter', '5.70', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Scalar::Util', '1.39', { + 'source_tmpl': 'Scalar-List-Utils-1.39.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PEVANS/'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('HTTP::Tiny', '0.043', { + 'source_tmpl': 'HTTP-Tiny-0.043.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-0.53.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD/'], + 'patches': ['XML-Bare-0.53_icc.patch'], + }), + ('Text::Balanced', '2.02', { + 'source_tmpl': 'Text-Balanced-2.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Parse::RecDescent', '1.967009', { + 'source_tmpl': 'Parse-RecDescent-1.967009.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JT/JTBRAUN/'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL/'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions/'], + }), + ('Lingua::EN::PluralToSingular', '0.13', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..9bae7265d6c65826a8868c3b6bfc81a7f1b73dbb --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-7.1.2.eb @@ -0,0 +1,747 @@ +name = 'Perl' +version = '5.20.0' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [ + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('DBI', '1.631', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], + }), + ('Module::Build', '0.4205', { + 'source_tmpl': 'Module-Build-0.4205.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Devel::StackTrace', '1.32', { + 'source_tmpl': 'Devel-StackTrace-1.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Exception::Class', '1.38', { + 'source_tmpl': 'Exception-Class-1.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Tester', '0.109', { + 'source_tmpl': 'Test-Tester-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Deep', '0.112', { + 'source_tmpl': 'Test-Deep-0.112.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Algorithm::Diff', '1.15', { + 'source_tmpl': 'Algorithm-Diff-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/N/NE/NEDKONZ/'], + }), + ('Text::Diff', '1.41', { + 'source_tmpl': 'Text-Diff-1.41.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Differences', '0.61', { + 'source_tmpl': 'Test-Differences-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Sub::Uplevel', '0.24', { + 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Exception', '0.32', { + 'source_tmpl': 'Test-Exception-0.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Test::Most', '0.33', { + 'source_tmpl': 'Test-Most-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('File::Slurp::Tiny', '0.003', { + 'source_tmpl': 'File-Slurp-Tiny-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Tree::DAG_Node', '1.22', { + 'source_tmpl': 'Tree-DAG_Node-1.22.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Try::Tiny', '0.20', { + 'source_tmpl': 'Try-Tiny-0.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Test::Fatal', '0.013', { + 'source_tmpl': 'Test-Fatal-0.013.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Test::Requires', '0.07', { + 'source_tmpl': 'Test-Requires-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Sub::Install', '0.927', { + 'source_tmpl': 'Sub-Install-0.927.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Capture::Tiny', '0.24', { + 'source_tmpl': 'Capture-Tiny-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Module::Implementation', '0.07', { + 'source_tmpl': 'Module-Implementation-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('List::MoreUtils', '0.33', { + 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Package::DeprecationManager', '0.13', { + 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Package::Stash', '0.36', { + 'source_tmpl': 'Package-Stash-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('TAP::Harness::Env', '3.30', { + 'source_tmpl': 'Test-Harness-3.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('ExtUtils::Helpers', 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'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], + }), + ('Eval::Closure', '0.11', { + 'source_tmpl': 'Eval-Closure-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('Devel::GlobalDestruction', '0.12', { + 'source_tmpl': 'Devel-GlobalDestruction-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('boolean', '0.32', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Class::Load::XS', '0.08', { + 'source_tmpl': 'Class-Load-XS-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Moose', '2.1208', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Params::Validate', '1.10', { + 'source_tmpl': 'Params-Validate-1.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime::Locale', '0.45', { + 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Singleton', '1.4', { + 'source_tmpl': 'Class-Singleton-1.4.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('DateTime::TimeZone', '1.70', { + 'source_tmpl': 'DateTime-TimeZone-1.70.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Warnings', '0.014', { + 'source_tmpl': 'Test-Warnings-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('DateTime', '1.10', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::HTML', '1.00', { + 'source_tmpl': 'IO-HTML-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('URI', '1.60', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Encode::Locale', '1.03', { + 'source_tmpl': 'Encode-Locale-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Request', '6.06', { + 'source_tmpl': 'HTTP-Message-6.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('AnyEvent', '7.07', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], + }), + ('Devel::CheckCompiler', '0.05', { + 'source_tmpl': 'Devel-CheckCompiler-0.05.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY/'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Module::Build::XSUtil', '0.10', { + 'source_tmpl': 'Module-Build-XSUtil-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO/'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('aliased', '0.31', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Exporter::Declare', '0.113', { + 'source_tmpl': 'Exporter-Declare-0.113.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mock::Quick', '1.107', { + 'source_tmpl': 'Mock-Quick-1.107.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::LeakTrace', '0.14', { + 'source_tmpl': 'Test-LeakTrace-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('Mouse', '2.3.0', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('Clone', '0.37', { + 'source_tmpl': 'Clone-0.37.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Config::General', '2.56', { + 'source_tmpl': 'Config-General-2.56.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('Font::TTF', '1.04', { + 'source_tmpl': 'Font-TTF-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Math::Round', '0.06', { + 'source_tmpl': 'Math-Round-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 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['http://cpan.metacpan.org/authors/id/D/DP/DPARIS/'], + }), + ('Net::SNMP', '6.0.1', { + 'source_tmpl': 'Net-SNMP-v6.0.1.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DT/DTOWN/'], + }), + ('List::AllUtils', '0.08', { + 'source_tmpl': 'List-AllUtils-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('AnyData', '0.11', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SD/SDOWIDEIT/'], + }), + ('Test::Simple', '1.001003', { + 'source_tmpl': 'Test-Simple-1.001003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Getopt::Long', '2.42', { + 'source_tmpl': 'Getopt-Long-2.42.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JV/JV/'], + }), + ('AppConfig', '1.66', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('Archive::Extract', '0.72', { + 'source_tmpl': 'Archive-Extract-0.72.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-2.16.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR/'], + }), + ('B::Lint', '1.17', { + 'source_tmpl': 'B-Lint-1.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Bundle::BioPerl', '2.1.8', { + 'source_tmpl': 'Bundle-BioPerl-2.1.8.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CR/CRAFFI/'], + }), + ('LWP', '6.07', { + 'source_tmpl': 'libwww-perl-6.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSCHILLI/'], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI/'], + }), + ('Class::DBI', '3.0.17', { + 'source_tmpl': 'Class-DBI-v3.0.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Class::Inspector', '1.28', { + 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['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Expect', '1.21', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RG/RGIERSIG/'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-4.42.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-6.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('File::Which', '1.09', { + 'source_tmpl': 'File-Which-1.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('FreezeThaw', '0.5001', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules/'], + }), + ('Git', '0.03', { + 'source_tmpl': 'Git-0.03.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSOUTH/'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-0.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SJ/SJCARBON/'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-6.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::Stringy', '2.110', { + 'source_tmpl': 'IO-stringy-2.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DS/DSKOLL/'], + }), + ('IO::Tty', '1.11', { + 'source_tmpl': 'IO-Tty-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('IO::Socket::SSL', '1.997', { + 'source_tmpl': 'IO-Socket-SSL-1.997.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SU/SULLR/'], + }), + ('JSON', '2.90', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA/'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Mail::Util', '2.13', { + 'source_tmpl': 'MailTools-2.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MARKOV/'], + }), + ('MIME::Types', '2.04', { + 'source_tmpl': 'MIME-Types-2.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MA/MARKOV/'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-3.030.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Module::Pluggable', '5.1', { + 'source_tmpl': 'Module-Pluggable-5.1.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SI/SIMONW/'], + }), + ('Net::HTTP', '6.06', { + 'source_tmpl': 'Net-HTTP-6.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Net::SMTP::SSL', '1.01', { + 'source_tmpl': 'Net-SMTP-SSL-1.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CW/CWEST/'], + }), + ('ExtUtils::MakeMaker', '6.98', { + 'source_tmpl': 'ExtUtils-MakeMaker-6.98.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-0.48.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS/'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJENNESS/'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RM/RMBARKER/'], + }), + ('Pod::POM', '0.29', { + 'source_tmpl': 'Pod-POM-0.29.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AN/ANDREWF/'], + }), + ('Shell', '0.72', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FE/FERREIRA/'], + }), + ('SQL::Statement', '1.405', { + 'source_tmpl': 'SQL-Statement-1.405.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('Statistics::Descriptive', '3.0607', { + 'source_tmpl': 'Statistics-Descriptive-3.0607.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Switch', '2.17', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Template', '2.25', { + 'source_tmpl': 'Template-Toolkit-2.25.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('Term::UI', '0.42', { 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('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('XML::SAX::Writer', '0.54', { + 'source_tmpl': 'XML-SAX-Writer-0.54.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::Simple', '2.20', { + 'source_tmpl': 'XML-Simple-2.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::XPath', '1.13', { + 'source_tmpl': 'XML-XPath-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSERGEANT/'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK/'], + }), + ('DBD::SQLite', '1.42', { + 'source_tmpl': 'DBD-SQLite-1.42.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-0.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERRIN/'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD/'], + }), + ('Params::Validate', '1.13', { + 'source_tmpl': 'Params-Validate-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Term::ReadKey', '2.32', { + 'source_tmpl': 'TermReadKey-2.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JS/JSTOWE/'], + 'patches': ['TermReadKey-2.32.patch'], + }), + ('Moo', '1.005000', { + 'source_tmpl': 'Moo-1.005000.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('strictures', '1.005004', { + 'source_tmpl': 'strictures-1.005004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('File::Find::Rule::Perl', '1.13', { + 'source_tmpl': 'File-Find-Rule-Perl-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Version', '1.002004', { + 'source_tmpl': 'Test-Version-1.002004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/X/XE/XENO/'], + }), + ('Test::Harness', '3.32', { + 'source_tmpl': 'Test-Harness-3.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Import::Into', '1.002004', { + 'source_tmpl': 'Import-Into-1.002004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-0.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('IPC::Run3', '0.03', { + 'source_tmpl': 'IPC-Run3-0.048.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-0.30.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Want', '0.23', { + 'source_tmpl': 'Want-0.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..197f8c762ae811cdaf5876b5fadec37258902c9a --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb @@ -0,0 +1,817 @@ +name = 'Perl' +version = '5.20.0' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [ + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], + }), + ('DBI', '1.631', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], + }), + ('Module::Build', '0.4205', { + 'source_tmpl': 'Module-Build-0.4205.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Devel::StackTrace', '1.32', { + 'source_tmpl': 'Devel-StackTrace-1.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('Exception::Class', '1.38', { + 'source_tmpl': 'Exception-Class-1.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Tester', '0.109', { + 'source_tmpl': 'Test-Tester-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Deep', '0.112', { + 'source_tmpl': 'Test-Deep-0.112.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Algorithm::Diff', '1.15', { + 'source_tmpl': 'Algorithm-Diff-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/N/NE/NEDKONZ/'], + }), + ('Text::Diff', '1.41', { + 'source_tmpl': 'Text-Diff-1.41.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Test::Differences', '0.61', { + 'source_tmpl': 'Test-Differences-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Sub::Uplevel', '0.24', { + 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Exception', '0.32', { + 'source_tmpl': 'Test-Exception-0.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Test::Most', '0.33', { + 'source_tmpl': 'Test-Most-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('File::Slurp::Tiny', '0.003', { + 'source_tmpl': 'File-Slurp-Tiny-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Tree::DAG_Node', '1.22', { + 'source_tmpl': 'Tree-DAG_Node-1.22.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Try::Tiny', '0.20', { + 'source_tmpl': 'Try-Tiny-0.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Test::Fatal', '0.013', { + 'source_tmpl': 'Test-Fatal-0.013.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Test::Requires', '0.07', { + 'source_tmpl': 'Test-Requires-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Sub::Install', '0.927', { + 'source_tmpl': 'Sub-Install-0.927.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Capture::Tiny', '0.24', { + 'source_tmpl': 'Capture-Tiny-0.24.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Module::Implementation', '0.07', { + 'source_tmpl': 'Module-Implementation-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('List::MoreUtils', '0.33', { + 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Package::DeprecationManager', '0.13', { + 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Package::Stash', '0.36', { + 'source_tmpl': 'Package-Stash-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('TAP::Harness::Env', '3.30', { + 'source_tmpl': 'Test-Harness-3.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('ExtUtils::Helpers', 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'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], + }), + ('Eval::Closure', '0.11', { + 'source_tmpl': 'Eval-Closure-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('Devel::GlobalDestruction', '0.12', { + 'source_tmpl': 'Devel-GlobalDestruction-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('boolean', '0.32', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], + }), + ('Class::Load::XS', '0.08', { + 'source_tmpl': 'Class-Load-XS-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Moose', '2.1208', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('Params::Validate', '1.10', { + 'source_tmpl': 'Params-Validate-1.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('DateTime::Locale', '0.45', { + 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Class::Singleton', '1.4', { + 'source_tmpl': 'Class-Singleton-1.4.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], + }), + ('DateTime::TimeZone', '1.70', { + 'source_tmpl': 'DateTime-TimeZone-1.70.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Test::Warnings', '0.014', { + 'source_tmpl': 'Test-Warnings-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('DateTime', '1.10', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('IO::HTML', '1.00', { + 'source_tmpl': 'IO-HTML-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('URI', '1.60', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Encode::Locale', '1.03', { + 'source_tmpl': 'Encode-Locale-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTTP::Request', '6.06', { + 'source_tmpl': 'HTTP-Message-6.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('AnyEvent', '7.07', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], + }), + ('Devel::CheckCompiler', '0.05', { + 'source_tmpl': 'Devel-CheckCompiler-0.05.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY/'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Module::Build::XSUtil', '0.10', { + 'source_tmpl': 'Module-Build-XSUtil-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO/'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('aliased', '0.31', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Exporter::Declare', '0.113', { + 'source_tmpl': 'Exporter-Declare-0.113.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Mock::Quick', '1.107', { + 'source_tmpl': 'Mock-Quick-1.107.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST/'], + }), + ('Test::LeakTrace', '0.14', { + 'source_tmpl': 'Test-LeakTrace-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('Mouse', '2.3.0', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], + }), + ('Clone', '0.37', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Config::General', '2.56', { + 'source_tmpl': 'Config-General-2.56.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('Font::TTF', '1.04', { + 'source_tmpl': 'Font-TTF-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Math::Round', '0.06', { + 'source_tmpl': 'Math-Round-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Readonly', '1.04', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO/'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-2013031301.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Text::Format', '0.59', { + 'source_tmpl': 'Text-Format-0.59.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Crypt::Rijndael', '1.12', { + 'source_tmpl': 'Crypt-Rijndael-1.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-2.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DP/DPARIS/'], + }), + ('Net::SNMP', '6.0.1', { + 'source_tmpl': 'Net-SNMP-v6.0.1.tar.gz', + 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['http://cpan.metacpan.org/authors/id/T/TM/TMTM/'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD/'], + }), + ('Params::Validate', '1.13', { + 'source_tmpl': 'Params-Validate-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], + }), + ('Term::ReadKey', '2.32', { + 'source_tmpl': 'TermReadKey-2.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JS/JSTOWE/'], + 'patches': ['TermReadKey-2.32.patch'], + }), + ('Moo', '1.005000', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('strictures', '1.005004', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], + }), + ('File::Find::Rule::Perl', '1.13', { + 'source_tmpl': 'File-Find-Rule-Perl-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Test::Version', '1.002004', { + 'source_tmpl': 'Test-Version-1.002004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/X/XE/XENO/'], + }), + ('Test::Harness', '3.32', { + 'source_tmpl': 'Test-Harness-3.32.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT/'], + }), + ('Import::Into', '1.002004', { + 'source_tmpl': 'Import-Into-1.002004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-0.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP/'], + }), + ('IPC::Run3', '0.03', { + 'source_tmpl': 'IPC-Run3-0.048.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-0.30.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Want', '0.23', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], + }), + ('File::Spec', '3.47', { + 'source_tmpl': 'PathTools-3.47.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER/'], + }), + ('Log::Handler', '0.82', { + 'source_tmpl': 'Log-Handler-0.82.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BL/BLOONIX/'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('DBIx::Admin::TableInfo', '2.11', { + 'source_tmpl': 'DBIx-Admin-TableInfo-2.11.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Carp', '1.3301', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Exporter', '5.70', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Scalar::Util', '1.39', { + 'source_tmpl': 'Scalar-List-Utils-1.39.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PEVANS/'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('HTTP::Tiny', '0.043', { + 'source_tmpl': 'HTTP-Tiny-0.043.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-0.53.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD/'], + 'patches': ['XML-Bare-0.53_icc.patch'], + }), + ('Text::Balanced', '2.02', { + 'source_tmpl': 'Text-Balanced-2.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Parse::RecDescent', '1.967009', { + 'source_tmpl': 'Parse-RecDescent-1.967009.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JT/JTBRAUN/'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL/'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions/'], + }), + ('Lingua::EN::PluralToSingular', '0.13', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..df13383ba5e9858349dfa85ddd299ab0440286d3 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb @@ -0,0 +1,17 @@ +name = 'Perl' +version = '5.20.1' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..fcafa63e1e6604cc6a553b33441c2714d89c59c0 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb @@ -0,0 +1,17 @@ +name = 'Perl' +version = '5.20.1' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/TermReadKey-2.32.patch b/easybuild/easyconfigs/p/Perl/TermReadKey-2.32.patch new file mode 100644 index 0000000000000000000000000000000000000000..4361648edc73f0ec29793a929ca386cfc881892b --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/TermReadKey-2.32.patch @@ -0,0 +1,18 @@ +# A version of Blib was provided with the install, and it did not work. +# Removing the -Mblib makes sure that a workin blib version is loaded +# (blib should be installed before installing TermKey) +--- TermReadKey-2.32/Makefile.PL.orig 2014-03-12 19:13:22.000000000 +0100 ++++ TermReadKey-2.32/Makefile.PL 2014-07-22 16:55:58.152687354 +0200 +@@ -49,10 +49,10 @@ + $_ .= " + + sgtty cchars.h: genchars.pl +- \$(PERL) -Mblib -I\$(PERL_LIB) genchars.pl ++ \$(PERL) -I\$(PERL_LIB) genchars.pl + + distcc: genchars.pl +- \$(PERL) -Mblib -I\$(PERL_LIB) genchars.pl dist ++ \$(PERL) -I\$(PERL_LIB) genchars.pl dist + + ReadKey.c: cchars.h + diff --git a/easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch b/easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch new file mode 100644 index 0000000000000000000000000000000000000000..2a350bcb0b3c170c9a71e2e969fcb2ed50a159d2 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch @@ -0,0 +1,13 @@ +#Use icc instead of gcc +#September 11 2014 by B. Hajgato +--- XML-Bare-0.53/Makefile.PL.orig 2013-04-30 04:00:00.000000000 +0200 ++++ XML-Bare-0.53/Makefile.PL 2014-09-11 08:17:22.437966044 +0200 +@@ -94,7 +94,7 @@ + my $div = (substr($ENV{'PATH'},0,1) eq '/') ? ':' : ';'; + my @path = split($div,$ENV{'PATH'}); + foreach my $dir ( @path ) { +- return 'gcc' if( -e "$dir/gcc" || -e "$dir/gcc.exe" ); # prefer gcc ++ return 'icc' if( -e "$dir/icc" || -e "$dir/icc.exe" ); # prefer icc + return 'cc' if( -e "$dir/cc" || -e "$dir/cc.exe" ); + } + return 0; diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb index a63b23cc20349951c5dac2c88b26d2611dba5f49..2ee0e32243a25aa516db98deefcbb9187c555eee 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'PhyML' version = '20120412' diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb similarity index 97% rename from easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb rename to easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb index 4e9e600420108359f0e8798fdb64a5e8abbd6cff..3c4e95c7ce3f04734542fc26a6ea1ca5098d7850 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'PhyML' version = '20131016' versionsuffix = 'devel' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index 7a975980fe4f34dd60563254894015ee2aa72340..09f3055b4fe88b441eeccbe9d8c160736d05f269 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index c0a121ef7142282c5af710af95a19eb45d065410..42193d47f35644adec9eeb0dcce7432186f19ebf 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -41,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index 2e5b1c3cc2250da678074bdff00d2a988f849e9d..1afb913fc7607e47b803ac9c41ab7499ef7e9996 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index 3cc5940708666c2ba9efb5f48b9341877224feda..e06519fa69987f44c0014e38102183f71b122e2d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -41,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index f8a7666f7894cb16ac9e4152a7a3a4091c0b34d8..d2a397a75d806bf9aad8efad36c57e24f32fe3d2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 262c91f0612550dc536db2ac4de4d1bd0f0dbb7d..911d601c84368e75a5abfe04667bb98ef40174bc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index c22d902c711604be4d7065d3014044162fbfb2fc..fc55e5413639d896256936638231fcaf58590ecb 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index 4e3149189fe6419b31d23d284a5ac07aa53be141..ddb8cca0346e0049c0315afa2f018740052d60af 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index 0f28917f5c477df4dc5f64a791cf599377b8ce33..30918d38a9a352121f271d3a48f406fdf4443f87 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..4134226fe7b98924718d7252f11112382b57cca9 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -0,0 +1,85 @@ +name = 'Python' +version = '2.7.3' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.6.1' +scipyversion = '0.10.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.7'), + ('libreadline', '6.2'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +exts_list = [ + ('setuptools', '0.6c11', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.1', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.1.2', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s_distutils_multiple-lib-dirs.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('mpi4py', '1.3', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.17.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '0.9.1', { + 'source_urls': ['https://deap.googlecode.com/files/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.12.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index 11ffa16a419c4596ffa94a12c789b58956e1f0f3..3674e8503a926ff9f3f5471f0b17b4523c579927 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index 97c9a23292c9c0a46528436b9e6a296cc7d9e1a8..c79f20595e57d91254db428ecd250e74bfeebd39 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index 79e4bbcd675ef6d68b01513648a1e5b945ef7cd9..35b2b5b200897f8d2b6ae8e3e33ea900bd5715b4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -41,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index 1ccc5c12cad7fbada0cb3bb6c90584b265a3529b..7aebaedcf469610d3b68a43cfd6f3180da63b707 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -41,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 3a167c9f92008578c048c70fd8143f8c31f46489..664ee1f1a80aa5dbda574aea6a28fa72ef961964 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index 1ad8450e3d74ac02a2abafb0115596c3a3ef11cb..bc49ef2fca7490912fefaf2c08393c93a68fb3d2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -47,7 +49,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -84,6 +86,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index df55e62340336d2e45887f4873743fd8aa9b408f..0c368fb252983ff0800e0665b01dc2bb189e274a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -41,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index 968045a415e88eb204cab1efe27a036b88418d7a..9bb670b9f904601e242e90b18ac90b600f536304 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index 464a9c044128efe2eed3bda59336447f19d9fe41..50f777575969b6b6285652f61f5c601eb7235ec3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -46,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -83,6 +85,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index 54b6d1a65fa71991b6ae24bc590fc3cf5c72d7dd..2ddde79dbde85046660d5e7b159e8ccbec211f11 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -44,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -81,6 +83,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index d513f80632036144eefebc984d116a177a546726..f1a9ed56728600ed12a41f32df1615dbfbfdd0d4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -44,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -81,6 +83,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index 4a7605ab2cbb41719964b60f0a3f3b6abb1adc5f..1fba318bdac427b8eb87f7bf6b8f36f86ba23de4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -26,6 +26,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -48,7 +50,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -85,6 +87,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index 44158cd1590c581b8808489f5ff86a775a37c958..f9fa5f9c8044c1d67c4b237077d873705f037c9b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.4.2', { @@ -43,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index 6a17a47968420cbc18349375b2abee1df39e9130..d5ea67a210ef198ffa074287538944c7b42233b1 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.4.2', { @@ -46,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -83,6 +85,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index af561484ae906744e682b6ee1322e1bcc2c224c9..ad9bec4d243546b27e9d7db0cba42e77dc224180 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.4.2', { @@ -46,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -83,6 +85,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..727caedb4deaa2f3768a51ff080e0e392faadde7 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -0,0 +1,92 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.6.1' +scipyversion = '0.10.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s_distutils_multiple-lib-dirs.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://deap.googlecode.com/files/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('pygments', '1.6', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], + 'source_tmpl': 'Pygments-%(version)s.tar.gz', + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..7c555315abafc3aedf226ceeec7d211e979d12f8 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -0,0 +1,98 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +configopts = ' --enable-unicode=ucs4 ' +preconfigopts = ' LDFLAGS="-lstdc++" ' + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..606015815ccace00a26f70fb426a72d21bc6a0a8 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -0,0 +1,95 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..8f5509ad1f1d887cdd5478ce51fa6bc4aff2c6da --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -0,0 +1,102 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..3ee92cdc842caf8378c2e863ab93ef609c81da4a --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb @@ -0,0 +1,29 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ddcd75ee83567e0e18097596210252ba5726a3d8 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -0,0 +1,102 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..583d5df7db549ce269ad084a57dfb100f4a6112d --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb @@ -0,0 +1,24 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..295a215baa2ceef2906775749a087979f7a5d43b --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -0,0 +1,102 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..d2a6be35eb198409ebb4c2ac5c2c8cc26313ea0e --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb @@ -0,0 +1,29 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f686a45b8ce9a93176b8dd5b932b4dd6f1b4d4b1 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -0,0 +1,105 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb index 236304395eb98b8df84e5215a2d0dbffd6c673df..5908968a8a65fbcc5c3ad1db5dc1ee1ce6a5ebe7 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -44,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,6 +66,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb index fbb78f9e843f4c1fea794768439dd083207b959c..f3672941f6af1a24145c0b37cef035576f42b86e 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -44,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,6 +66,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb index c6cedb61ef433077aac5ea122eaf1fb56f4ea8f1..46621b251dea8da198173233c4f8508e1187d6f0 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -46,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -66,6 +68,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb index 38875e2a4f38bf62a311837b042a57f4d34b7a02..202bdb8adeb222e6346ccfd8b394c218e00761c3 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -44,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,6 +66,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb index 73c3832a10263abab12a87b2cb598bac441cc489..ccb66beda57db794d238826331d74addd58217ed 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.1.1', { @@ -42,6 +44,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb index 8cd8056d73a9290524fe52c82aac0be61f7306c0..b8c6c3ff368cf8fd492604475dd0dcc9b3c96f83 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.1.1', { @@ -44,6 +46,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb index 27461c4521d9b31df49b02b626e594f027a3a8c8..9f533cb4eabc285c81fab7772be15f1b17487ec6 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.1.1', { @@ -44,6 +46,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa223ede51b607dbf1a930b12044579bfe080fff --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -0,0 +1,97 @@ +name = 'Python' +version = '3.4.1' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-3.4_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + # tarball has changed upstream, so make sure we get the right version by verifying the checksum + 'checksums': ['ce61468d4c1263e3005737bbed2641f0'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch b/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch new file mode 100644 index 0000000000000000000000000000000000000000..363f95c19f2c6cc7bcf21c58c0bb84e9a2f17248 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch @@ -0,0 +1,213 @@ +diff -ur numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py +--- numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py 2014-03-25 20:43:24.000000000 +0100 ++++ numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py 2014-07-08 15:22:31.471064031 +0200 +@@ -628,7 +628,10 @@ + return options + + def library_option(self, lib): +- return "-l" + lib ++ if lib[0]=='-': ++ return lib ++ else: ++ return "-l" + lib + def library_dir_option(self, dir): + return "-L" + dir + +diff -ur numpy-1.8.1.orig/numpy/distutils/system_info.py numpy-1.8.1-2/numpy/distutils/system_info.py +--- numpy-1.8.1.orig/numpy/distutils/system_info.py 2014-03-25 20:43:24.000000000 +0100 ++++ numpy-1.8.1-2/numpy/distutils/system_info.py 2014-07-08 15:32:34.480063940 +0200 +@@ -600,7 +600,7 @@ + if is_string(default): + return [default] + return default +- return [b for b in [a.strip() for a in libs.split(',')] if b] ++ return [b for b in [a.strip().replace(':',',') for a in libs.split(',')] if b] + + def get_libraries(self, key='libraries'): + return self.get_libs(key, '') +@@ -642,6 +642,23 @@ + lib_dirs) + return info + ++ def check_libs_all(self,lib_dir,libs,opt_libs =[]): ++ """If static or shared libraries are available then return ++ their info dictionary. ++ ++ Checks for all libraries as shared libraries first, then ++ static (or vice versa if self.search_static_first is True). ++ """ ++ exts = self.library_extensions() ++ info = None ++ for ext in exts: ++ info = self._check_libs_all(lib_dir,libs,opt_libs,[ext]) ++ if info is not None: ++ break ++ if not info: ++ log.info(' libraries %s not found in %s', ','.join(libs), lib_dir) ++ return info ++ + def check_libs2(self, lib_dirs, libs, opt_libs=[]): + """If static or shared libraries are available then return + their info dictionary. +@@ -655,6 +672,18 @@ + lib_dirs) + return info + ++ def check_libs2_all(self, lib_dirs, libs, opt_libs =[]): ++ """If static or shared libraries are available then return ++ their info dictionary. ++ ++ Checks each library for shared or static. ++ """ ++ exts = self.library_extensions() ++ info = self._check_libs_all(lib_dirs,libs,opt_libs,exts) ++ if not info: ++ log.info(' libraries %s not found in %s', ','.join(libs), os.pathsep.join(lib_dirs)) ++ return info ++ + def _lib_list(self, lib_dir, libs, exts): + assert is_string(lib_dir) + liblist = [] +@@ -665,6 +694,9 @@ + lib_prefixes = ['lib'] + # for each library name, see if we can find a file for it. + for l in libs: ++ if l[0]=='-': ++ liblist.append(l) ++ continue + for ext in exts: + for prefix in lib_prefixes: + p = self.combine_paths(lib_dir, prefix + l + ext) +@@ -680,6 +712,19 @@ + break + return liblist + ++ def _lib_list_all(self, lib_dirs, libs, exts): ++ assert (type(lib_dirs)==list) ++ if lib_dirs: ++ assert is_string(lib_dirs[0]) ++ liblist=[] ++ for lib_dir in lib_dirs: ++ ls=self._lib_list(lib_dir,libs,exts) ++ for l in ls: ++ log.info("(_lib_list_all) Found %s in %s"%(l,lib_dir)) ++ if l not in liblist: ++ liblist.append(l) ++ return liblist ++ + def _check_libs(self, lib_dirs, libs, opt_libs, exts): + """Find mandatory and optional libs in expected paths. + +@@ -721,6 +766,22 @@ + else: + return None + ++ def _check_libs_all(self, lib_dirs, libs, opt_libs, exts): ++ found_libs_unordered = self._lib_list_all(lib_dirs, libs, exts) ++ # ensure same order as in lib_dirs ++ found_libs = [] ++ for lib_dir in libs: ++ if lib_dir in found_libs_unordered: ++ found_libs.append(lib_dir) ++ if len(found_libs) == len(libs): ++ info = {'libraries' : found_libs, 'library_dirs' : lib_dirs} ++ opt_found_libs = self._lib_list_all(lib_dirs, opt_libs, exts) ++ if len(opt_found_libs) == len(opt_libs): ++ info['libraries'].extend(opt_found_libs) ++ return info ++ else: ++ return ++ + def combine_paths(self, *args): + """Return a list of existing paths composed by all combinations + of items from the arguments. +@@ -953,9 +1014,11 @@ + lib_dirs = self.get_lib_dirs() + incl_dirs = self.get_include_dirs() + mkl_libs = self.get_libs('mkl_libs', self._lib_mkl) +- info = self.check_libs2(lib_dirs, mkl_libs) +- if info is None: ++ mkl = None ++ mkl = self.check_libs2_all(lib_dirs,mkl_libs) ++ if mkl is None: + return ++ info = mkl + dict_append(info, + define_macros=[('SCIPY_MKL_H', None)], + include_dirs=incl_dirs) +@@ -1017,16 +1080,13 @@ + atlas = None + lapack = None + atlas_1 = None +- for d in lib_dirs: +- atlas = self.check_libs2(d, atlas_libs, []) +- lapack_atlas = self.check_libs2(d, ['lapack_atlas'], []) +- if atlas is not None: +- lib_dirs2 = [d] + self.combine_paths(d, ['atlas*', 'ATLAS*']) +- lapack = self.check_libs2(lib_dirs2, lapack_libs, []) +- if lapack is not None: +- break +- if atlas: +- atlas_1 = atlas ++ atlas = self.check_libs2_all(lib_dirs, atlas_libs) ++ lapack_atlas = self.check_libs2_all(lib_dirs, ['lapack_atlas']) ++ if atlas is not None: ++ lib_dirs2 = lib_dirs + self.combine_paths(lib_dirs,['atlas*','ATLAS*']) ++ lapack = self.check_libs2_all(lib_dirs2, lapack_libs) ++ if atlas: ++ atlas_1 = atlas + log.info(self.__class__) + if atlas is None: + atlas = atlas_1 +@@ -1105,7 +1165,8 @@ + info = {} + atlas_libs = self.get_libs('atlas_libs', + self._lib_names + self._lib_atlas) +- atlas = self.check_libs2(lib_dirs, atlas_libs, []) ++ atlas = None ++ atlas = self.check_libs2_all(lib_dirs, atlas_libs) + if atlas is None: + return + include_dirs = self.get_include_dirs() +@@ -1153,8 +1214,10 @@ + lib_dirs = self.get_lib_dirs() + + lapack_libs = self.get_libs('lapack_libs', self._lib_names) +- info = self.check_libs(lib_dirs, lapack_libs, []) +- if info is None: ++ lapack = self.check_libs_all(lib_dirs, lapack_libs, []) ++ if lapack is not None: ++ info = lapack ++ else: + return + info['language'] = 'f77' + self.set_info(**info) +@@ -1548,8 +1611,10 @@ + lib_dirs = self.get_lib_dirs() + + blas_libs = self.get_libs('blas_libs', self._lib_names) +- info = self.check_libs(lib_dirs, blas_libs, []) +- if info is None: ++ blas = self.check_libs_all(lib_dirs, blas_libs, []) ++ if blas is not None: ++ info = blas ++ else: + return + info['language'] = 'f77' # XXX: is it generally true? + self.set_info(**info) +diff -ur numpy-1.8.1.orig/numpy/distutils/unixccompiler.py numpy-1.8.1-2/numpy/distutils/unixccompiler.py +--- numpy-1.8.1.orig/numpy/distutils/unixccompiler.py 2014-03-25 20:43:23.000000000 +0100 ++++ numpy-1.8.1-2/numpy/distutils/unixccompiler.py 2014-07-08 15:34:01.924063926 +0200 +@@ -111,3 +111,12 @@ + + replace_method(UnixCCompiler, 'create_static_lib', + UnixCCompiler_create_static_lib) ++ ++def UnixCCompiler_library_option(self, lib): ++ if lib[0]=='-': ++ return lib ++ else: ++ return "-l" + lib ++ ++replace_method(UnixCCompiler, 'library_option', ++ UnixCCompiler_library_option) diff --git a/easybuild/easyconfigs/p/Python/python-3.4_libffi-include-xmmintrin.patch b/easybuild/easyconfigs/p/Python/python-3.4_libffi-include-xmmintrin.patch new file mode 100644 index 0000000000000000000000000000000000000000..a126ec9caf9932047282e73bf510cffaea9f4397 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/python-3.4_libffi-include-xmmintrin.patch @@ -0,0 +1,10 @@ +--- Python-3.4.1/Modules/_ctypes/libffi/src/x86/ffi64.c.orig 2014-02-15 13:40:51.000000000 +0100 ++++ Python-3.4.1/Modules/_ctypes/libffi/src/x86/ffi64.c 2014-02-15 13:40:58.000000000 +0100 +@@ -39,6 +39,7 @@ + #define MAX_SSE_REGS 8 + + #if defined(__INTEL_COMPILER) ++#include "xmmintrin.h" + #define UINT128 __m128 + #else + #if defined(__SUNPRO_C) diff --git a/easybuild/easyconfigs/p/packmol/packmol-13.234-ictce-4.1.13.eb b/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb similarity index 94% rename from easybuild/easyconfigs/p/packmol/packmol-13.234-ictce-4.1.13.eb rename to easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb index 839e36a38e236d6cef8790bce13b3d7c3e93675a..a6e1069f314ae5a6cbc34fc721b817c5736d0a35 100644 --- a/easybuild/easyconfigs/p/packmol/packmol-13.234-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCE_TAR_GZ] source_urls = ['https://packmol.googlecode.com/files'] -makeopts = 'FORTRAN="$F90"' +buildopts = 'FORTRAN="$F90"' files_to_copy = [(['packmol'],'bin'), 'COPYING', 'AUTHORS', 'LICENSE'] diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0ae8b6a9fc8dcac728fdb33a8a236d9802e0d48 --- /dev/null +++ b/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,31 @@ +easyblock = "PythonPackage" + +name = "pandas" +version = "0.13.1" + +homepage = "http://pypi.python.org/pypi/pandas/" +description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures + and data analysis tools for the Python programming language.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = "2.7.6" + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +py_short_ver = ".".join(pythonversion.split(".")[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': [("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index d19fa1d165e11e3141f643406068ef32d42a1c67..cfd2944d187bf01d172e6f733582b294ccba0d2d 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index ec06e9c7ccc9dcba224a678174a81c16673aeb2b..dc28a0e2110ab3c4064574ff8191f95cdf770aef 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 2a63fe61d3b38664efb9ad80295853ee2c99b011..355352cf8e2d6802391f84b21578143943058d5a 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index 8de6c2948530032a9f6377b9342fe175bf19da60..a00d8552bf65f91a6bf5d506e4bfccffca22d7bc 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb index 2bd4cf1e84d12f7a0f822a146e1fae154d5a1b19..29909ec6019e4d9c387b34782d36cbc34e5e3a78 100644 --- a/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "patch" version = "2.7.1" diff --git a/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb index d40dfa96e15a9d1d3c330292d03645def6748663..e4181c9571b5f7fd84c20a8a08f76623ca54b4e4 100644 --- a/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "patch" version = "2.7.1" diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb index 390422df744e6cf58025321be397070467bc464c..50258b4bd0f6462016c614f299a8765435aa6a3f 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb index d9363692b17a35f17207a5b9f097d35e4ac317c3..541743ef66f6ba1440fb6be735c9d4d3be9d42ab 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb index b4b6fab57b36a0ac9149446ff2b8f5d4fe70f1de..7971e5ec6d0a43bde1bd082b3d041483476d80fa 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb index 67d2d2a51cbcaca28ce15ef9a95ad4f776d66655..003ed58349a2e7332b10692699fcf23bc1c099bc 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb index f27088d0c87a793b99941dbf24eb089ea228877d..730661425c90dcfffe256e68b5325b271f1bc751 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc69def433077dc18ebc01fd42c99274809c6ea2 --- /dev/null +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = "pixman" +version = '0.32.6' + +homepage = 'http://www.pixman.org/' +description = """Pixman is a low-level software library for pixel manipulation, providing features such as image +compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libpixman-1.so'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb index fccf4e3235deb0f81e0e2b9fe4f7866c99805edf..b0953355e6e417452b0b31e2306ede09c127cf8f 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb index b6c751b4a9cec20b9f85a6126342d003ec3022ff..d6281260973a92cce10e18268a05c1c8dbf4c433 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb index 5cc5eaf745caad1d2a038c3e05af34e3d61a8208..2d7168b4db723d3a912fc30f5681381fc1c05004 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb index 4ac6d340c9c5b73d6ed9a71638b22caaef7ca430..d9c51d2da3b241677f63ef94e845ac05eb0bde6f 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..927b413c4e73765ba50895e422d563c7858b16ae --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.27.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [] + } + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa19c90773732451f403b9469d11336b9702d46c --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.28' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [] + } + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..309549fb3b4e0ff1e37a958b674aabd932d48aef --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.28' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [] + } + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b1a4ed316b77439698d51fe51d735e503293ca8 --- /dev/null +++ b/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'popt' +version = '1.14' + +homepage = "http://freecode.com/projects/popt" +description = """Popt is a C library for parsing command line parameters.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['http://rpm5.org/files/popt/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/popt.h', + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.so', 'lib64/libpopt.so')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a0c5612917e4a6f9a699defe6e09868741cf4fe --- /dev/null +++ b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'popt' +version = '1.14' + +homepage = "http://freecode.com/projects/popt" +description = """Popt is a C library for parsing command line parameters.""" +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} + + +source_urls = ['http://rpm5.org/files/popt/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/popt.h', + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.so', 'lib64/libpopt.so')], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..a64a52cc7ff76355ec8b74e2786b41454e6254d7 --- /dev/null +++ b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'popt' +version = "1.16" + +homepage = "http://freecode.com/projects/popt" +description = """Popt is a C library for parsing command line parameters.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://rpm5.org/files/popt/'] +sources = [SOURCE_TAR_GZ] + +#see if this fixes the assembly language fauilure + +toolchainopts = {'optarch': False} +sanity_check_paths = { + 'files': ['include/popt.h', + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.so', 'lib64/libpopt.so')], + 'dirs': [], +} + +maxparallel = 1 + +moduleclass = 'lib' + diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb index 7be5764ef683b09d505c2a02390762437adef740..8346a5cd7ae54f5cd2bc05e11e620ce52cad0316 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'printproto' version = '1.0.5' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb index f66766ca393a43009b26188cdb97f19a0ec0fc4c..db2b6fad9418f0c0e9d31f04580a209a1abf28ea 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'printproto' version = '1.0.5' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb index bc10ad3e08e5352520300e911144c76d301bbd1b..ae82f5006157fa4cea97f4fa5ddb9445ef2f424d 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'printproto' version = '1.0.5' diff --git a/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb index 7d7645d75c2c381af88a7ef1ee1ff61ea8449012..bf69687a4bafaa13560d0db42b5d9ec81be3b69d 100644 --- a/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'problog' version = '1.1' @@ -19,8 +21,8 @@ patches = [('SimpleCUDD-hardcoding.patch', '..')] skipsteps = ['configure', 'install'] -premakeopts = 'ln -s ../simplecudd && ' -makeopts = 'CC="$CC" CPP="$CXX" && mkdir -p %(installdir)s/bin && cp ProblogBDD %(installdir)s/bin' +prebuildopts = 'ln -s ../simplecudd && ' +buildopts = 'CC="$CC" CPP="$CXX" && mkdir -p %(installdir)s/bin && cp ProblogBDD %(installdir)s/bin' parallel = 1 diff --git a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb index ee27ea143c1b727325f12ca43af930081f082636..fb28417a02f7b7073d9c14d4e8423493d076a1f8 100644 --- a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'problog' version = '1.1' @@ -19,8 +21,8 @@ patches = [('SimpleCUDD-hardcoding.patch', '..')] skipsteps = ['configure', 'install'] -premakeopts = 'ln -s ../simplecudd && ' -makeopts = 'CC="$CC" CPP="$CXX" && mkdir -p %(installdir)s/bin && cp ProblogBDD %(installdir)s/bin' +prebuildopts = 'ln -s ../simplecudd && ' +buildopts = 'CC="$CC" CPP="$CXX" && mkdir -p %(installdir)s/bin && cp ProblogBDD %(installdir)s/bin' parallel = 1 diff --git a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb index bb29badc8bf5187cb451b45f7626c7bf3f03866a..94556bf0db1fd36c72c321170539bd992e2d0432 100644 --- a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'problog' version = '1.1' @@ -19,8 +21,8 @@ patches = [('SimpleCUDD-hardcoding.patch', '..')] skipsteps = ['configure', 'install'] -premakeopts = 'ln -s ../simplecudd && ' -makeopts = 'CC="$CC" CPP="$CXX" && mkdir -p %(installdir)s/bin && cp ProblogBDD %(installdir)s/bin' +prebuildopts = 'ln -s ../simplecudd && ' +buildopts = 'CC="$CC" CPP="$CXX" && mkdir -p %(installdir)s/bin && cp ProblogBDD %(installdir)s/bin' parallel = 1 diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb index 7d1df26fcd5d8c6c77db182a11d5258f1ad85b72..09916bed54547410c5597f61dd1992c4105d18ff 100644 --- a/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'protobuf' version = '2.4.0a' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb index f6ab1b5fd2fb34ee0b768fa37e06d21535ad1c70..e9345ea16d747348719cb2a461ea06b32e669fe0 100644 --- a/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'protobuf' version = '2.5.0' diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..1c59dd3dd2dcfa4da0c4aba1a6e203e1e9351ce7 --- /dev/null +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'pscom' +version = '5.0.43' + +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting +of a high-performance communication layer (MPI) and a sophisticated management layer.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['https://github.com/ParaStation/%(name)s/archive/'] +sources = ['%(version)s-1.zip'] + +dependencies = [('popt', '1.14')] + +sanity_check_paths = { + 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], + 'dirs': [], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..dfe678ff567869e10d0180b48dd7579c1c18e92f --- /dev/null +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'pscom' +version = '5.0.44-1' +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['https://github.com/ParaStation/%(name)s/archive/'] +sources = ['%(version)s.zip'] + +dependencies = [('popt', '1.16')] + + +sanity_check_paths = { + 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], + 'dirs': [], +} + +moduleclass = 'lib' + diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb new file mode 100644 index 0000000000000000000000000000000000000000..3e93e9239a3d70f4b376792b8d92cd980d1811b7 --- /dev/null +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'pscom' +version = '5.0.44-1' +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer.""" +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} + + +source_urls = ['https://github.com/ParaStation/%(name)s/archive/'] +sources = ['%(version)s.zip'] + +dependencies = [('popt', '1.14')] + +sanity_check_paths = { + 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], + 'dirs': [], +} +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..c310b1fc807c1ce68f8252a762add35bb5684329 --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb @@ -0,0 +1,43 @@ +easyblock = 'ConfigureMake' + +name = 'psmpi' +version = '5.1.0-1' + +homepage = 'https://github.com/ParaStation/psmpi2' +description = """ParaStation MPI as part of the ParaStationV5 cluster suite provides robust, flexible and scalable communication and management functions for Linux-based compute clusters. Beside parallel applications based on the Message Passing Interface specification, version 2 (MPI2), also serial applications are supported.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['%(version)s.tar.gz', + 'openpa-1.0.4.tar.gz'] +source_urls = ['https://github.com/ParaStation/psmpi2/archive/' + ,'https://trac.mpich.org/projects/openpa/raw-attachment/wiki/Downloads/'] + +# MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. +preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' + +# Build shared libraries +configopts = '--with-confset=gcc --enable-shared --enable-static' + +dependencies = [('pscom' , '5.0.44-1')] + + + + +sanity_check_paths = { + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + 'dirs': [], +} + + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb new file mode 100644 index 0000000000000000000000000000000000000000..2989b452c198dec2813d48ce1063c317144e8296 --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'psmpi' +version = '5.1.0-1' + +homepage = 'https://github.com/ParaStation/psmpi2' +description = """ParaStation MPI as part of the ParaStationV5 cluster suite provides robust, flexible and scalable communication and management functions for Linux-based compute clusters. Beside parallel applications based on the Message Passing Interface specification, version 2 (MPI2), also serial applications are supported.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} + +sources = ['%(version)s.tar.gz', + 'openpa-1.0.4.tar.gz'] +source_urls = ['https://github.com/ParaStation/psmpi2/archive/' + ,'https://trac.mpich.org/projects/openpa/attachment/wiki/Downloads'] + +# MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. +preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' + +# Build shared libraries +configopts = '--with-confset=intel --enable-shared --enable-static --enable-romio --enable-mpe' + +dependencies = [('pscom' , '5.0.44-1')] + + +sanity_check_paths = { + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + 'dirs': [], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..86c6b1c0045cb906be044849c2d1df9940f1fa49 --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb @@ -0,0 +1,50 @@ +easyblock = 'ConfigureMake' + +name = 'psmpi2' +version = '5.0.29' +versionsuffix = "-mt" + +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting +of a high-performance communication layer (MPI) and a sophisticated management layer.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['https://github.com/ParaStation/%s/archive/' % name] +sources = ['%s-1.zip' % version] + +# patch for potential lib vs. lib64 mismatches when installing on e.g. openSUSE +patches = ['psmpi2-%(version)s_lib-dir.patch'] + +dependencies = [ + ('pscom', '5.0.43'), +] + +# MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. +preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' + +configopts = '--with-confset=default --with-threading MPICH2_LDFLAGS=-lpscom' + +# parallel build tends to fail +parallel = 1 + +# create required VERSION file +prebuildopts = "echo '%(version)s-1' > VERSION && " +preinstallopts = prebuildopts + +sanity_check_paths = { + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + 'dirs': [], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..a095dc02b4ed17685ef776a07dd1be60ab969e6d --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb @@ -0,0 +1,49 @@ +easyblock = 'ConfigureMake' + +name = 'psmpi2' +version = '5.0.29' + +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting +of a high-performance communication layer (MPI) and a sophisticated management layer.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['https://github.com/ParaStation/%s/archive/' % name] +sources = ['%s-1.zip' % version] + +# patch for potential lib vs. lib64 mismatches when installing on e.g. openSUSE +patches = ['psmpi2-%(version)s_lib-dir.patch'] + +dependencies = [ + ('pscom', '5.0.43'), +] + +# MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. +preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' + +configopts = '--with-confset=default MPICH2_LDFLAGS=-lpscom' + +# parallel build tends to fail +parallel = 1 + +# create required VERSION file +prebuildopts = "echo '%(version)s-1' > VERSION && " +preinstallopts = prebuildopts + +sanity_check_paths = { + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + 'dirs': [], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29_lib-dir.patch b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29_lib-dir.patch new file mode 100644 index 0000000000000000000000000000000000000000..82e8e3c99a4d50538890581930dce2cb60f3090d --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29_lib-dir.patch @@ -0,0 +1,12 @@ +--- a/Makefile.in ++++ b/Makefile.in +@@ -70,8 +70,7 @@ install_mpich2: + $(RM) $(prefix)/sbin/mpetestlink + @rmdir $(prefix)/sbin || echo ok + # Hack: use lib*.so.3 when app needs lib*.so.1.1 or 1.2 +- set -x; \ +- for l in $(prefix)/lib/lib*.so.3; do \ ++ for l in $(prefix)/lib*/lib*.so.3; do \ + test -f "$$l" || { echo "Error: Missing $$l!"; exit 1; }; \ + ln -sf "$${l##*/}" "$${l%.3}.1.1"; \ + ln -sf "$${l##*/}" "$${l%.3}.1.2"; \ diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..9aa673f99d68812c56f9a914354631b02ef3726b --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb @@ -0,0 +1,27 @@ +easyblock = 'CMakeMake' + +name = 'Qhull' +version = '2012.1' + +homepage = 'http://www.qhull.org' +description = """ +Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, +furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, +and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. +""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} + +sources = ['%(namelower)s-%(version)s-src.tgz'] +source_urls = ['http://www.qhull.org/download/'] + +patches = ['Qhull-2012.1-intel-fix.patch'] + +builddependencies = [('CMake', '2.8.12')] + +sanity_check_paths = { + 'files': ['bin/qhull', 'lib/libqhull.so'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..35f7fe3a7216c8e173c56b6f8b5d3a91efea132b --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb @@ -0,0 +1,27 @@ +easyblock = 'CMakeMake' + +name = 'Qhull' +version = '2012.1' + +homepage = 'http://www.qhull.org' +description = """ +Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, +furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, +and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(namelower)s-%(version)s-src.tgz'] +source_urls = ['http://www.qhull.org/download/'] + +patches = ['Qhull-2012.1-intel-fix.patch'] + +builddependencies = [('CMake', '2.8.12')] + +sanity_check_paths = { + 'files': ['bin/qhull', 'lib/libqhull.so'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-fix.patch b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-fix.patch new file mode 100644 index 0000000000000000000000000000000000000000..27aa7dff87780c9ab90d19b33873d6af0c486213 --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-fix.patch @@ -0,0 +1,23 @@ +# they use some weird template thing in pure C code to avoid +# warnings, I think, but only for intel compilers +# We remove the special case for intel and use the general one +# Ward Poelmans +diff -ur qhull-2012.1.orig/src/libqhull/qhull_a.h qhull-2012.1/src/libqhull/qhull_a.h +--- qhull-2012.1.orig/src/libqhull/qhull_a.h 2012-01-26 04:32:07.000000000 +0100 ++++ qhull-2012.1/src/libqhull/qhull_a.h 2014-10-01 11:49:18.000000000 +0200 +@@ -102,13 +102,8 @@ + #elif defined(__MWERKS__) && defined(__INTEL__) + # define QHULL_OS_WIN + #endif +-#if defined(__INTEL_COMPILER) && !defined(QHULL_OS_WIN) +-template +-inline void qhullUnused(T &x) { (void)x; } +-# define QHULL_UNUSED(x) qhullUnused(x); +-#else +-# define QHULL_UNUSED(x) (void)x; +-#endif ++ ++#define QHULL_UNUSED(x) (void)x; + + /***** -libqhull.c prototypes (alphabetical after qhull) ********************/ + diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goalf-1.1.0-no-OFED.eb index 15b02947eefe358f592de8099368084b92b7a63a..feb10d4a75d6bb0dda9c1a6efdb1c0ca87c60835 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goalf-1.1.0-no-OFED.eb @@ -8,7 +8,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} source_urls = [ 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(major_minor_version)s/%(version)s/' + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-gompi-1.4.12-no-OFED.eb index 2d4e7c17a13d3bea5a038070add9b5d2c123cefa..e8472dac116c8b9a467210f1980b37d0f16f03c5 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-gompi-1.4.12-no-OFED.eb @@ -8,7 +8,7 @@ toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} source_urls = [ 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(major_minor_version)s/%(version)s/' + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goolf-1.4.10.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goolf-1.4.10.eb index f83f3ffb6a01c777489f47151bcf84ee4748a262..c489c5aa682dc189801d00ca78badd7605f47344 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-goolf-1.4.10.eb @@ -8,7 +8,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [ 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(major_minor_version)s/%(version)s/' + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.0.6.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.0.6.eb index ffa5551d148cf6401667d7bab0064eee6a0b7b38..4a7a10534b010eb44940b5c9b222ccc771571d71 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.0.6.eb @@ -9,7 +9,7 @@ toolchainopts = {'lowopt': True} # use -O1 source_urls = [ 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(major_minor_version)s/%(version)s/' + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.1.13.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.1.13.eb index e05c77a46b51a099bfbc465ccbe58e95cc6f00a7..a411477c0b4a84ffa9789a5b47ee2c5ea1822563 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-4.1.13.eb @@ -8,7 +8,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = [ 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(major_minor_version)s/%(version)s/' + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-5.3.0.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-5.3.0.eb index 654eb56d935e3f0f5534154ced31cb742c99b48b..3c0ae0a9af0e5c4e53a5345aa2721d80a94d6b7c 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.4-ictce-5.3.0.eb @@ -8,7 +8,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [ 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(major_minor_version)s/%(version)s/' + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' ] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb index faddb7d77e2c32c35f5ca443b934780f9338ace3..7569a7cd7bfeabf0f8b1b45e509cd00ac2b78270 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb @@ -3,9 +3,13 @@ version = '4.8.5' homepage = 'http://qt-project.org/' description = "Qt is a comprehensive cross-platform C++ application framework." + toolchain = {'name': 'gmpolf', 'version': '1.4.8'} -source_urls = ['http://download.qt-project.org/official_releases/qt/4.8/4.8.5/'] +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] dependencies = [('GLib', '2.34.3')] diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..d39e90c9e46e3001311fb5366759aca6da0491b0 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb @@ -0,0 +1,20 @@ +name = 'Qt' +version = '4.8.5' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = ['http://download.qt-project.org/official_releases/qt/4.8/4.8.5/'] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +dependencies = [('GLib', '2.34.3')] + +configopts="-confirm-license -opensource -silent" + +sanity_check_paths = { + 'files': ['lib/libQtCore.so'], + 'dirs': [], +} +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..312d6b1990967b49de842fb1ab05f316e7b8cd8f --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.5' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.5_ictce-qUnused.patch'] + +dependencies = [('GLib', '2.34.3')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5_ictce-qUnused.patch b/easybuild/easyconfigs/q/Qt/Qt-4.8.5_ictce-qUnused.patch new file mode 100644 index 0000000000000000000000000000000000000000..e881808fd22bb1066056764589ee4f43ac599042 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.5_ictce-qUnused.patch @@ -0,0 +1,15 @@ +see https://qt.gitorious.net/qt/qtbase/commit/d3951a5b0f4fe9731d1512668b43f51bd98bd84e +and http://lists.qt-project.org/pipermail/interest/2013-September/008591.html +diff --git a/src/corelib/global/qglobal.h b/src/corelib/global/qglobal.h +index 7d91fa3..cc0e6a1 100644 +--- a/src/corelib/global/qglobal.h ++++ b/src/corelib/global/qglobal.h +@@ -820,7 +820,7 @@ Q_CORE_EXPORT bool qSharedBuild(); + Avoid "unused parameter" warnings + */ + +-#if defined(Q_CC_INTEL) && !defined(Q_OS_WIN) || defined(Q_CC_RVCT) ++#if defined(Q_CC_RVCT) + template + inline void qUnused(T &x) { (void)x; } + # define Q_UNUSED(x) qUnused(x); diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..6435694c00b4b278b079abc8dfe17f99b1088b54 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.6' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.6_icc-qUnused.patch'] + +dependencies = [('GLib', '2.40.0')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1c0c56d935b9a88c00e6de0793f06c3de8ade6d9 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.6' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.6_icc-qUnused.patch'] + +dependencies = [('GLib', '2.40.0')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa253ef5eb61b7029bee2827281a37e20c4ec584 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.6' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.6_icc-qUnused.patch'] + +dependencies = [('GLib', '2.40.0')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch b/easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch new file mode 100644 index 0000000000000000000000000000000000000000..f022691e694dc7aca93ad5583b4c030ab2e26574 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch @@ -0,0 +1,13 @@ +see https://qt.gitorious.net/qt/qtbase/commit/d3951a5b0f4fe9731d1512668b43f51bd98bd84e +and http://lists.qt-project.org/pipermail/interest/2013-September/008591.html +--- src/corelib/global/qglobal.h.orig 2014-04-10 20:37:11.000000000 +0200 ++++ src/corelib/global/qglobal.h 2014-09-08 09:39:10.533187070 +0200 +@@ -1721,7 +1721,7 @@ + Avoid "unused parameter" warnings + */ + +-#if defined(Q_CC_INTEL) && !defined(Q_OS_WIN) || defined(Q_CC_RVCT) ++#if defined(Q_CC_RVCT) + template + inline void qUnused(T &x) { (void)x; } + # define Q_UNUSED(x) qUnused(x); diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..16a64ab3be7a54492c2976a842878d752582ee3d --- /dev/null +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'QuadProg++' +version = '1.2.1' + +homepage = 'http://sourceforge.net/projects/quadprog/' +description = """ A C++ library for Quadratic Programming which implements the + Goldfarb-Idnani active-set dual method. At present it is limited to the solution + of strictly convex quadratic programs. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s.tar.gz' % (name.lower().rstrip('++'), version)] +source_urls = ['http://downloads.sourceforge.net/project/quadprog/'] + +dependencies = [('Boost', '1.53.0')] + +configopts = ' --with-boost=$EBROOTBOOST' + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..8514e49d958fc97db7a61be41701a70eea7a11fa --- /dev/null +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'QuadProg++' +version = '1.2.1' + +homepage = 'http://sourceforge.net/projects/quadprog/' +description = """ A C++ library for Quadratic Programming which implements the + Goldfarb-Idnani active-set dual method. At present it is limited to the solution + of strictly convex quadratic programs. """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +sources = ['%s-%s.tar.gz' % (name.lower().rstrip('++'), version)] +source_urls = ['http://downloads.sourceforge.net/project/quadprog/'] + +dependencies = [('Boost', '1.53.0')] + +configopts = ' --with-boost=$EBROOTBOOST' + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED-hybrid.eb index c7c70b133ce52fc4c75f3319b68c116987748a07..526c214c25a435c6cb1443714d83e0cafe1339f3 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED-hybrid.eb @@ -32,7 +32,7 @@ patches = [ 'yambo_fix-configure-LDFLAGS.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED.eb index 632b84416c46ac8d2884835ccab12a494c3b32cc..b2137fc8784b5785cf45e949a6968cc44a2eb20a 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goalf-1.1.0-no-OFED.eb @@ -31,7 +31,7 @@ patches = [ 'yambo_fix-configure-LDFLAGS.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10-hybrid.eb index 106b9ec5dcf309150921cbb10daf7ec172adfcf7..3162afc2aff2a8fbbde3d1d2a38ee264da984e06 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10-hybrid.eb @@ -32,7 +32,7 @@ patches = [ 'yambo_fix-configure-LDFLAGS.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10.eb index fd96509a3d9e32166b0533f0af06c68a22e838e3..d4f77ba82e5d8d9a7b5c890aeaef61475ade7d86 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-goolf-1.4.10.eb @@ -31,7 +31,7 @@ patches = [ 'yambo_fix-configure-LDFLAGS.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6-hybrid.eb index ff1ccd416c789efec39a1e705bf4f438ee38c793..836f3ab862058d8ca8421941999cabc35f15f95c 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6-hybrid.eb @@ -30,7 +30,7 @@ patches = [ 'yambo_fix-configure_ictce.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6.eb index d15d97009bd1dd5e2b5444ceea46998a422b1ade..215e20da8125e969a559322ea484d28290c9fc6a 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-4.0.6.eb @@ -29,7 +29,7 @@ patches = [ 'yambo_fix-configure_ictce.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0-hybrid.eb index cd5c79406188e8cde9bb9777ef8ed03749dc4c5e..d26a0b55268a695ecb6c646d4b68765268e0e952 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0-hybrid.eb @@ -30,7 +30,7 @@ patches = [ 'yambo_fix-configure_ictce.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb index 4ec5d3ed70155d582434dba4052fbf720fe1f2a0..37bdd94912bf8d2c0d7bb1c1b5d216c4897a8dd9 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb @@ -29,7 +29,7 @@ patches = [ 'yambo_fix-configure_ictce.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0-hybrid.eb index 1dd41c052bd241eeb90869465d47553ff370a7b7..d0ada078f3e912ff0ebe833059cccfc079792b1d 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0-hybrid.eb @@ -30,7 +30,7 @@ patches = [ 'yambo_fix-configure_ictce.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb index 8e4fd125939ed685ed32bb56010656a9d1298dd7..6b0604d138b44bbb3e87b98ded07e5f9eb8e2457 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb @@ -29,7 +29,7 @@ patches = [ 'yambo_fix-configure_ictce.patch', ] -makeopts = 'all gipaw vdw w90 want gww xspectra yambo' +buildopts = 'all gipaw vdw w90 want gww xspectra yambo' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED-hybrid.eb index 4d7911d2dfe513cc1fc816ec84f2dcf14ffc5771..9409f95fc206cd19a6e196e4177f62b5e4d9200b 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED-hybrid.eb @@ -42,7 +42,7 @@ parallel = 1 # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # hybrid build (enable OpenMP) hybrid = True diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED.eb index b8ec946c6136288435508f34ce6444af7738b3d3..4a03ccc94bd4e3b3aaff407cb3c90d8d7e7e0949 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goalf-1.1.0-no-OFED.eb @@ -38,7 +38,7 @@ patches = ['yambo-3.2.5_fix-objects-files.patch'] # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10-hybrid.eb index df07d19513fd131128e50a4d2fc27cbac9d3909a..d97dae5c5d8dd5c07024fde7d92ab102129c0b7d 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10-hybrid.eb @@ -42,7 +42,7 @@ parallel = 1 # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # hybrid build (enable OpenMP) hybrid = True diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10.eb index a27849d9f9cc37e4d40166b1f50382e0e9c472a9..d7fb61f42cb35e3be57acdace48cca8609ec54ab 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-goolf-1.4.10.eb @@ -38,7 +38,7 @@ patches = ['yambo-3.2.5_fix-objects-files.patch'] # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6-hybrid.eb index 5376b7ca12551762c81c233c0b449db84a47d169..04f547b28a8e665ed375dcd49da27afa4509a9c4 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6-hybrid.eb @@ -45,7 +45,7 @@ parallel = 1 # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # hybrid build (enable OpenMP) hybrid = True diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6.eb index 7e9edfdb1a4e3477ccae4d18023227f53d4e6ccb..479e526fb358b8c079887fe5c8316cf5665d683b 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-4.0.6.eb @@ -41,7 +41,7 @@ patches = [ # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0-hybrid.eb index 63c5ce63fa09468b0a128e6f0fda21328376baa3..1b9a405ed89847f871fa0c890342dc25af73533c 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0-hybrid.eb @@ -45,7 +45,7 @@ parallel = 1 # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # hybrid build (enable OpenMP) hybrid = True diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0.eb index e41022393181f32a6af6db98920c59fc6263cf67..5740815aa1c84140baf6e0da8cfaf4a064d38aff 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.3.0.eb @@ -41,7 +41,7 @@ patches = [ # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0-hybrid.eb index 04ad81b30e568dbd7d020de167d06c4fabc01197..bf87cf39af9adacab29cce8aa61d4f3cd13ccf63 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0-hybrid.eb @@ -45,7 +45,7 @@ parallel = 1 # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # hybrid build (enable OpenMP) hybrid = True diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0.eb index 85601025bc99f844cbcfcf86384158d56b453595..a341ebad381bd60aae7be259ee6334a7407eda82 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-5.0.2-ictce-5.5.0.eb @@ -41,7 +41,7 @@ patches = [ # gipaw excluded, because v5.0 isn't stable # xspectra v5.0.2 is nowhere to be found -makeopts = 'all w90 want yambo plumed' +buildopts = 'all w90 want yambo plumed' # parallel build tends to fail parallel = 1 diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..1cda3a4011f1d514226ab94990142f4236b9f2ca --- /dev/null +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2015 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'ConfigureMake' + +name = 'Quip' +version = '1.1.8' + +homepage = 'http://homes.cs.washington.edu/~dcjones/quip' +description = """Quip compresses next-generation sequencing data with extreme prejudice. + It supports input and output in the FASTQ and SAM/BAM formats, + compressing large datasets to as little as 15% of their original size.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +sanity_check_paths = { + 'files': ["bin/quip"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index c4d421186a4cef52dac01d4ad9e9580830eab88a..c04c0cb73de4a38c2afa8d7df385ff60e5fc9316 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb index 8774fdea31f120a196354d82003503276cc165da..3bc73c713b4d65c5d57e77dcb5f694091a03d544 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb @@ -44,6 +44,14 @@ bioconductor_options = { 'source_urls': ['http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } + +# some packages seem to only be in rforge, not in cran +rforge_options = { + 'source_urls': ['http://download.r-forge.r-project.org/src/contrib/'], + 'source_tmpl': name_tmpl, +} + + # !! order of packages is important !! exts_list = [ # default libraries, only here to sanity check their presence @@ -153,6 +161,12 @@ exts_list = [ ('gtable', '0.1.2', ext_options), ('proto', '0.3-10', ext_options), ('ggplot2', '0.9.3.1', ext_options), + ('leaps', '2.9', ext_options), + ('survival', '2.37-4', ext_options), + ('speff2trial', '1.0.4', ext_options), + ('nleqslv', '2.1', ext_options), + ('glmnet', '1.9-5', ext_options), + ('pim', '1.1.5.4', rforge_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb index 8d93a87fe57495b3dd41a7c367109378555795d6..580cc3effdd735e0ff34a3693da1c7436b984413 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb @@ -44,6 +44,13 @@ bioconductor_options = { 'source_urls': ['http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } + +# some packages seem to only be in rforge, not in cran +rforge_options = { + 'source_urls': ['http://download.r-forge.r-project.org/src/contrib/'], + 'source_tmpl': name_tmpl, +} + # !! order of packages is important !! exts_list = [ # default libraries, only here to sanity check their presence @@ -153,6 +160,12 @@ exts_list = [ ('gtable', '0.1.2', ext_options), ('proto', '0.3-10', ext_options), ('ggplot2', '0.9.3.1', ext_options), + ('leaps', '2.9', ext_options), + ('survival', '2.37-4', ext_options), + ('speff2trial', '1.0.4', ext_options), + ('nleqslv', '2.1', ext_options), + ('glmnet', '1.9-5', ext_options), + ('pim', '1.1.5.4', rforge_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..1bda6f96bcf6640fa85698b5894b5ee74265e7c1 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb @@ -0,0 +1,171 @@ +name = 'R' +version = '3.0.2' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.2'), + ('ncurses', '5.9'), + ('libpng', '1.6.6'), # for plotting in R + ('Java', '1.7.0_15', '', True), # Java bindings are built if Java is found, might as well provide it +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + + ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', + 'R.h', 'Rinterface.h', 'Rinternals.h', + 'Rmath.h', 'Rversion.h', 'S.h']] + + ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + + ['lib64/R/lib/libR.so'], + 'dirs': [] +} + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.freestatistics.org/src/contrib', # alternative for packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': ['http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'source_tmpl': name_tmpl, +} + +# some packages seem to only be in rforge, not in cran +rforge_options = { + 'source_urls': ['http://download.r-forge.r-project.org/src/contrib/'], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('irace', '1.04', ext_options), + ('rJava', '0.9-4', ext_options), + ('lattice', '0.20-24', ext_options), + ('RColorBrewer', '1.0-5', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-0', ext_options), + ('png', '0.1-6', ext_options), + ('Rcpp', '0.10.6', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2013.4-1', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-29', ext_options), + ('class', '7.3-9', ext_options), + ('e1071', '1.6-1', ext_options), + ('nnet', '7.3-7', ext_options), + ('car', '2.0-19', ext_options), + ('colorspace', '1.2-4', ext_options), + ('robustbase', '0.9-10', ext_options), + ('sp', '1.0-14', ext_options), + ('vcd', '1.3-1', ext_options), + ('snowfall', '1.84-4', ext_options), + ('rpart', '4.1-3', ext_options), + ('mice', '2.18', ext_options), + ('nlme', '3.1-111', ext_options), + ('mgcv', '1.7-27', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-9', ext_options), + ('cluster', '1.14.4', ext_options), + ('coda', '0.16-1', ext_options), + ('codetools', '0.2-8', ext_options), + ('DBI', '0.2-7', ext_options), + ('foreign', '0.8-57', ext_options), + ('survival', '2.37-4', ext_options), + ('gam', '1.09', ext_options), + ('gamlss.data', '4.2-6', ext_options), + ('gamlss.dist', '4.2-0', ext_options), + ('hwriter', '1.3', ext_options), + ('KernSmooth', '2.23-10', ext_options), + ('zoo', '1.7-10', ext_options), + ('lmtest', '0.9-32', ext_options), + ('mnormt', '1.4-5', ext_options), + ('mvtnorm', '0.9-9996', ext_options), + ('numDeriv', '2012.9-1', ext_options), + ('pscl', '1.04.4', ext_options), + ('RSQLite', '0.11.4', ext_options), + ('sandwich', '2.3-0', ext_options), + ('sfsmisc', '1.0-24', ext_options), + ('spatial', '7.3-7', ext_options), + ('VGAM', '0.9-3', ext_options), + ('waveslim', '1.7.1', ext_options), + ('xtable', '1.7-1', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.10-8', ext_options), + ('odesolve', '0.9-9', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-32', ext_options), + ('neuRosim', '0.2-10', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.5.2', ext_options), + ('R.oo', '1.15.8', ext_options), + ('R.matlab', '2.0.5', ext_options), + ('Rniftilib', '0.0-32', ext_options), + ('BiocGenerics', '0.8.0', bioconductor_options), + ('Biobase', '2.22.0', bioconductor_options), + ('IRanges', '1.20.5', bioconductor_options), + ('AnnotationDbi', '1.24.0', bioconductor_options), + ('XVector', '0.2.0', bioconductor_options), + ('Biostrings', '2.30.0', bioconductor_options), + ('GenomicRanges', '1.14.3', bioconductor_options), + ('BSgenome', '1.30.0', bioconductor_options), + ('zlibbioc', '1.8.0', bioconductor_options), + ('Rsamtools', '1.14.1', bioconductor_options), + ('ShortRead', '1.20.0', bioconductor_options), + ('graph', '1.40.0', bioconductor_options), + ('igraph0', '0.5.7', ext_options), + ('gbm', '2.1', ext_options), + ('plyr', '1.8', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.1-1', ext_options), + ('Hmisc', '3.13-0', ext_options), + ('stringr', '0.6.2', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.2', ext_options), + ('scales', '0.2.3', ext_options), + ('fastcluster', '1.1.11', ext_options), + ('reshape2', '1.2.2', ext_options), + ('digest', '0.6.3', ext_options), + ('gtable', '0.1.2', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '0.9.3.1', ext_options), + ('leaps', '2.9', ext_options), + ('survival', '2.37-4', ext_options), + ('speff2trial', '1.0.4', ext_options), + ('nleqslv', '2.1', ext_options), + ('glmnet', '1.9-5', ext_options), + ('pim', '1.1.5.4', rforge_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0-bare.eb b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..6ec4b22fa3c1c9fb698cb26f51e65a94a3c77d96 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0-bare.eb @@ -0,0 +1,27 @@ +name = 'R' +version = '3.1.0' +versionsuffix = '-bare' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.2'), + ('ncurses', '5.9'), + ('libpng', '1.6.9'), # for plotting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ba677bcf6dea4a02e7bac76203c7b364505ff8aa --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb @@ -0,0 +1,179 @@ +name = 'R' +version = '3.1.0' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.2'), + ('ncurses', '5.9'), + ('libpng', '1.6.9'), # for plotting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.freestatistics.org/src/contrib', # alternative for packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': ['http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], + 'source_tmpl': name_tmpl, +} +# !! order of packages is important !! +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('irace', '1.04', ext_options), + ('rJava', '0.9-6', ext_options), + ('lattice', '0.20-29', ext_options), + ('RColorBrewer', '1.0-5', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-3', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.1', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.1-1', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-33', ext_options), + ('class', '7.3-10', ext_options), + ('e1071', '1.6-3', ext_options), + ('nnet', '7.3-8', ext_options), + ('car', '2.0-20', ext_options), + ('colorspace', '1.2-4', ext_options), + ('DEoptimR', '1.0-1', ext_options), + ('robustbase', '0.91-1', ext_options), + ('sp', '1.0-15', ext_options), + ('vcd', '1.3-1', ext_options), + ('snowfall', '1.84-6', ext_options), + ('rpart', '4.1-8', ext_options), + ('randomForest', '4.6-7', ext_options), + ('mice', '2.21', ext_options), + ('nlme', '3.1-117', ext_options), + ('mgcv', '1.7-29', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-11', ext_options), + ('cluster', '1.15.2', ext_options), + ('coda', '0.16-1', ext_options), + ('codetools', '0.2-8', ext_options), + ('DBI', '0.2-7', ext_options), + ('foreign', '0.8-61', ext_options), + ('survival', '2.37-7', ext_options), + ('gam', '1.09.1', ext_options), + ('gamlss.data', '4.2-7', ext_options), + ('gamlss.dist', '4.2-7', ext_options), + ('hwriter', '1.3', ext_options), + ('KernSmooth', '2.23-12', ext_options), + ('zoo', '1.7-11', ext_options), + ('lmtest', '0.9-33', ext_options), + ('mnormt', '1.4-7', ext_options), + ('mvtnorm', '0.9-99992', ext_options), + ('numDeriv', '2012.9-1', ext_options), + ('pscl', '1.04.4', ext_options), + ('RSQLite', '0.11.4', ext_options), + ('sandwich', '2.3-0', ext_options), + ('sfsmisc', '1.0-25', ext_options), + ('spatial', '7.3-8', ext_options), + ('VGAM', '0.9-4', ext_options), + ('waveslim', '1.7.3', ext_options), + ('xtable', '1.7-3', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.10-8', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-32', ext_options), + ('neuRosim', '0.2-10', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.6.1', ext_options), + ('R.oo', '1.18.0', ext_options), + ('R.utils', '1.32.4', ext_options), + ('R.matlab', '3.0.1', ext_options), + ('Rniftilib', '0.0-32', ext_options), + ('iterators', '1.0.7', ext_options), + ('foreach', '1.4.2', ext_options), + ('BBmisc', '1.6', ext_options), + ('digest', '0.6.4', ext_options), + ('base64enc', '0.1-1', ext_options), + ('sendmailR', '1.1-2', ext_options), + ('brew', '1.0-6', ext_options), + ('plyr', '1.8.1', ext_options), + ('stringr', '0.6.2', ext_options), + ('fail', '1.2', ext_options), + ('BatchJobs', '1.2', ext_options), + ('BiocGenerics', '0.10.0', bioconductor_options), + ('Biobase', '2.24.0', bioconductor_options), + ('IRanges', '1.22.8', bioconductor_options), + ('GenomeInfoDb', '1.0.2', bioconductor_options), + ('AnnotationDbi', '1.26.0', bioconductor_options), + ('XVector', '0.4.0', bioconductor_options), + ('zlibbioc', '1.10.0', bioconductor_options), + ('Biostrings', '2.32.0', bioconductor_options), + ('GenomicRanges', '1.16.3', bioconductor_options), + ('Rsamtools', '1.16.0', bioconductor_options), + ('BSgenome', '1.32.0', bioconductor_options), + ('BiocParallel', '0.6.1', bioconductor_options), + ('GenomicAlignments', '1.0.1', bioconductor_options), + ('ShortRead', '1.22.0', bioconductor_options), + ('graph', '1.42.0', bioconductor_options), + ('gbm', '2.1', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.1-1', ext_options), + ('Hmisc', '3.14-4', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.2', ext_options), + ('scales', '0.2.4', ext_options), + ('fastcluster', '1.1.13', ext_options), + ('reshape2', '1.4', ext_options), + ('gtable', '0.1.2', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '1.0.0', ext_options), + ('reshape', '0.8.5', ext_options), + ('gsalib', '2.0', ext_options), + ('ape', '3.1-2', ext_options), + ('igraph', '0.7.1', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('phangorn', '1.99-7', ext_options), + ('gdsfmt', '1.0.4', ext_options), + ('SNPRelate', '0.9.19', ext_options), + ('getopt', '1.20.0', ext_options), + ('miscTools', '0.6-16', ext_options), + ('maxLik', '1.2-0', ext_options), + ('statmod', '1.4.20', ext_options), + ('mlogit', '0.2-4', ext_options), + ('optparse', '1.2.0', ext_options), + ('permute', '0.8-3', ext_options), + ('vegan', '2.0-10', ext_options), + ('gtools', '3.4.1', ext_options), + ('combinat', '0.0-8', ext_options), + ('klaR', '0.6-11', ext_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..10cfd0f2dca745fe023fa2e721c54fef05938f43 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb @@ -0,0 +1,39 @@ +name = 'R' +version = '3.1.1' +versionsuffix = '-bare-mt' # bare, as in no extensions included + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +# turn on -fpmodel=precise and -O3 +toolchainopts = {'precise': True, 'opt': True} # 'openmp' is enabled in R by default + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' # use multi-thread BLAS/LAPACK +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.12'), # for plotting in R + ('libjpeg-turbo', '1.3.1'), # for plotting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] # just to make it explicit this module doesn't include any extensions + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + + ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', + 'R.h', 'Rinterface.h', 'Rinternals.h', + 'Rmath.h', 'Rversion.h', 'S.h']] + + ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + + ['lib64/R/lib/libR.so'], + 'dirs': [] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..84b9a7bb033b553948e0716b3f4f4aba7ef06679 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb @@ -0,0 +1,70 @@ +name = 'R' +version = '3.1.1' +versionsuffix = '-default-mt' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +# turn on -fpmodel=precise and -O3 +toolchainopts = {'precise': True, 'opt': True} # 'openmp' is enabled in R by default + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' # use multi-thread BLAS/LAPACK +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.12'), # for plotting in R + ('libjpeg-turbo', '1.3.1'), # for plotting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + + ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', + 'R.h', 'Rinterface.h', 'Rinternals.h', + 'Rmath.h', 'Rversion.h', 'S.h']] + + ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + + ['lib64/R/lib/libR.so'], + 'dirs': [] +} + +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'boot', + 'class', + 'cluster', + 'codetools', + 'compiler', + 'datasets', + 'foreign', + 'graphics', + 'grDevices', + 'grid', + 'KernSmooth', + 'lattice', + 'MASS', + 'Matrix', + 'methods', + 'mgcv', + 'nlme', + 'nnet', + 'parallel', + 'rpart', + 'spatial', + 'splines', + 'stats', + 'stats4', + 'survival', + 'tcltk', + 'tools', + 'translations', + 'utils', +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..810f195e932c88de6e6cb2517c61f0b515da67e7 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb @@ -0,0 +1,39 @@ +name = 'R' +version = '3.1.1' +versionsuffix = '-bare-mt' # bare, as in no extensions included + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +# turn on -fpmodel=precise and -O3 +toolchainopts = {'precise': True, 'opt': True} # 'openmp' is enabled in R by default + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' # use multi-thread BLAS/LAPACK +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.12'), # for plotting in R + ('libjpeg-turbo', '1.3.1'), # for plotting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] # just to make it explicit this module doesn't include any extensions + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + + ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', + 'R.h', 'Rinterface.h', 'Rinternals.h', + 'Rmath.h', 'Rversion.h', 'S.h']] + + ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + + ['lib64/R/lib/libR.so'], + 'dirs': [] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb new file mode 100644 index 0000000000000000000000000000000000000000..63bf09eeb5a6362ec51566a586b2259e45d9de3f --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb @@ -0,0 +1,70 @@ +name = 'R' +version = '3.1.1' +versionsuffix = '-default-mt' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +# turn on -fpmodel=precise and -O3 +toolchainopts = {'precise': True, 'opt': True} # 'openmp' is enabled in R by default + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' # use multi-thread BLAS/LAPACK +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.12'), # for plotting in R + ('libjpeg-turbo', '1.3.1'), # for plotting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + + ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', + 'R.h', 'Rinterface.h', 'Rinternals.h', + 'Rmath.h', 'Rversion.h', 'S.h']] + + ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + + ['lib64/R/lib/libR.so'], + 'dirs': [] +} + +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'boot', + 'class', + 'cluster', + 'codetools', + 'compiler', + 'datasets', + 'foreign', + 'graphics', + 'grDevices', + 'grid', + 'KernSmooth', + 'lattice', + 'MASS', + 'Matrix', + 'methods', + 'mgcv', + 'nlme', + 'nnet', + 'parallel', + 'rpart', + 'spatial', + 'splines', + 'stats', + 'stats4', + 'survival', + 'tcltk', + 'tools', + 'translations', + 'utils', +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb b/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..37633fc50a2375c6b9a9c1850940b746fc15afe0 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb @@ -0,0 +1,312 @@ +name = 'R' +version = '3.1.1' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.12'), # for plotting in R + ('libjpeg-turbo', '1.3.1'), # for plottting in R + ('Java', '1.7.0_60', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.freestatistics.org/src/contrib', # alternative for packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': ['http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], + 'source_tmpl': name_tmpl, +} +# !! order of packages is important !! +# packages updated on June 30th 2014 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', ext_options), + ('abind', '1.4-0', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-4', dict(ext_options.items() + {'patches': ['geometry-0.3-4-icc.patch']}.items())), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.6', ext_options), + ('bootstrap', '2014.4', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('Defaults', '1.1-1', ext_options), + ('fdrtool', '1.2.12', ext_options), + ('formatR', '0.10', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.3', ext_options), + ('infotheo', '1.1.1', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-19', ext_options), + ('mime', '0.1.1', ext_options), + ('markdown', '0.7', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-3', ext_options), + ('mclust', '4.3', ext_options), + ('RANN', '2.3.0', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.3-1.0', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.6-6', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-16', ext_options), + ('timeDate', '3010.98', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.6-2', ext_options), + ('AlgDesign', '1.1-7.2', ext_options), + ('base64enc', '0.1-2', ext_options), + ('BH', '1.54.0-2', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.6', ext_options), + ('longitudinal', '1.1.9', ext_options), + ('checkmate', '1.1', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-1', ext_options), + ('digest', '0.6.4', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.11.3', ext_options), + ('iterators', '1.0.7', ext_options), + ('maps', '2.3-7', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.1-2', ext_options), + ('spam', '0.41-0', ext_options), + ('subplex', '1.1-3', ext_options), + ('stringr', '0.6.2', ext_options), + ('evaluate', '0.5.5', ext_options), + ('logspline', '2.1.5', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-3', ext_options), + ('plotrix', '3.5-7', ext_options), + ('randomForest', '4.6-7', ext_options), + ('scatterplot3d', '0.3-35', ext_options), + ('SparseM', '1.03', ext_options), + ('tripack', '1.3-6', ext_options), + ('irace', '1.04', ext_options), + ('rJava', '0.9-6', ext_options), + ('lattice', '0.20-29', ext_options), + ('RColorBrewer', '1.0-5', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-4', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.2', ext_options), + ('RcppArmadillo', '0.4.300.8.0', ext_options), + ('plyr', '1.8.1', ext_options), + ('pROC', '1.7.3', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.1-1', ext_options), + ('BBmisc', '1.7', ext_options), + ('fail', '1.2', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-33', ext_options), + ('tree', '1.0-35', ext_options), + ('pls', '2.4-3', ext_options), + ('class', '7.3-10', ext_options), + ('e1071', '1.6-3', ext_options), + ('nnet', '7.3-8', ext_options), + ('car', '2.0-20', ext_options), + ('colorspace', '1.2-4', ext_options), + ('robustbase', '0.91-1', ext_options), + ('sp', '1.0-15', ext_options), + ('vcd', '1.3-1', ext_options), + ('snowfall', '1.84-6', ext_options), + ('rpart', '4.1-8', ext_options), + ('mice', '2.22', ext_options), + ('nlme', '3.1-117', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('mgcv', '1.8-0', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-11', ext_options), + ('mixtools', '1.0.2', ext_options), + ('cluster', '1.15.2', ext_options), + 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+name = 'R' +version = '3.1.2' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + 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--enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 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0000000000000000000000000000000000000000..0884c45575bd209a9fde535312e89b03e680f0d7 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a-bare.eb @@ -0,0 +1,28 @@ +name = 'R' +version = '3.1.2' +versionsuffix = '-bare' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..99a39db56abaedc1857f6c47d8d73b84966d49ce --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb @@ -0,0 +1,374 @@ +name = 'R' +version = '3.1.2' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-0', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-4', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.6', ext_options), + ('bootstrap', '2014.4', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', 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('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '2.9', ext_options), + ('FactoMineR', '1.28', ext_options), + ('modeltools', '0.2-21', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-12', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-6', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-9', ext_options), + ('BiasedUrn', '1.06.1', ext_options), + ('hgu133plus2.db', '3.0.0', bioconductor_options), + ('TeachingDemos', '2.9', ext_options), + ('jsonlite', '0.9.14', ext_options), + ('kohonen', '2.0.15', ext_options), + ('base64', '1.1', ext_options), + ('illuminaio', '0.8.0', bioconductor_options), + ('registry', '0.2', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doRNG', '1.6', ext_options), + ('bumphunter', '1.6.0', bioconductor_options), + ('multtest', '2.22.0', bioconductor_options), + ('siggenes', '1.40.0', bioconductor_options), + ('nleqslv', '2.5', ext_options), + ('DynDoc', '1.44.0', bioconductor_options), + ('genoset', '1.20.0', bioconductor_options), + ('RGCCA', '2.0', ext_options), + ('pheatmap', '0.7.7', ext_options), + ('multtest', '2.22.0', bioconductor_options), + ('NOISeq', '2.8.0', bioconductor_options), + ('openxlsx', '2.2.1', ext_options), + ('Rgraphviz', '2.10.0', bioconductor_options), + ('pvclust', '1.3-2', ext_options), + ('RCircos', '1.1.2', ext_options), + ('reshape', '0.8.5', ext_options), + ('RNASeqPower', '1.6.0', bioconductor_options), + ('VennDiagram', '1.6.9', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch b/easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch new file mode 100644 index 0000000000000000000000000000000000000000..236508841e0be195847b19dfdaff30ddb23f6f83 --- /dev/null +++ b/easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch @@ -0,0 +1,12 @@ +diff -ru Rmpi.orig/configure Rmpi/configure +--- Rmpi.orig/configure 2014-04-08 18:12:40.000000000 +0200 ++++ Rmpi/configure 2015-01-08 14:35:03.518018605 +0100 +@@ -3780,7 +3780,7 @@ + PKG_LIBS="-L${MPI_LIBPATH} -lmpich -lmpl -lopa ${MPI_LIBS}" + ;; + INTELMPI) +- PKG_LIBS="-Wl,-rpath,${MPI_LIBPATH} -L${MPI_LIBPATH} -lmpich -lmpigf -lmpigi ${MPI_LIBS}" ++ PKG_LIBS="-Wl,-rpath,${MPI_LIBPATH} -L${MPI_LIBPATH} -lmpi -lmpigf -lmpigi ${MPI_LIBS}" + ;; + CRAY) + PKG_LIBS="-L${MPI_LIBPATH} -lmpich_cray_default64 -lmpl -lopa ${MPI_LIBS}" diff --git a/easybuild/easyconfigs/r/R/geometry-0.3-4-icc.patch b/easybuild/easyconfigs/r/R/geometry-0.3-4-icc.patch new file mode 100644 index 0000000000000000000000000000000000000000..495f79034125855a6dbc64958a40f49c7fc21be1 --- /dev/null +++ b/easybuild/easyconfigs/r/R/geometry-0.3-4-icc.patch @@ -0,0 +1,15 @@ +# Remove C++ code from a C header; was a workaround for older Intel compilers. +# It was for a macro that simply suppresses unused variable warnings +--- geometry-0.3.4/geometry/src/qhull_a.h.orig 2014-03-05 20:18:14.000000000 +0100 ++++ geometry-0.3.4/geometry/src/qhull_a.h 2014-07-04 09:36:27.802215260 +0200 +@@ -103,9 +103,7 @@ + # define QHULL_OS_WIN + #endif + #if defined(__INTEL_COMPILER) && !defined(QHULL_OS_WIN) +-template +-inline void qhullUnused(T &x) { (void)x; } +-# define QHULL_UNUSED(x) qhullUnused(x); ++# define QHULL_UNUSED(x) (x); + #else + # define QHULL_UNUSED(x) (void)x; + #endif diff --git a/easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch b/easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch new file mode 100644 index 0000000000000000000000000000000000000000..7e62596ef7a88e6db372604162b6169d061fbdb9 --- /dev/null +++ b/easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch @@ -0,0 +1,15 @@ +# Remove C++ code from a C header; was a workaround for older Intel compilers. +# It was for a macro that simply suppresses unused variable warnings +--- geometry-0.3.5/geometry.orig/src/qhull_a.h 2014-11-07 21:37:50.000000000 +0100 ++++ geometry-0.3.5/geometry/src/qhull_a.h 2015-01-08 13:02:17.000000000 +0100 +@@ -103,9 +103,7 @@ + # define QHULL_OS_WIN + #endif + #if defined(__INTEL_COMPILER) && !defined(QHULL_OS_WIN) +-template +-inline void qhullUnused(T &x) { (void)x; } +-# define QHULL_UNUSED(x) qhullUnused(x); ++# define QHULL_UNUSED(x) (x); + #else + # define QHULL_UNUSED(x) (void)x; + #endif diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb index 78f85c1cf4de51cf31250743b38f3a88cbca5e2a..567f46f555eec35381b5f2937f134dc1cd6c9576 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-hybrid-sse3' @@ -13,7 +15,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-HYBRID-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb index fc60f7006781c50b57d0006da7acdb7af57dca27..0a2fbab41aff8754363edef106b740ab097b3082 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mpi-sse3' @@ -13,7 +15,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-MPI-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb index 39069a442712f8de72170ceb505732db10b40b9a..ebf504fd65afc6ccd9eaef07d2c93fac7016ce73 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mt-sse3' @@ -12,7 +14,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-PTHREADS-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb index ed0968ec55bbfbb619e06967d51d7f5e767abf02..67c58af8a4c7687eb59d0d754053af2745da8c8c 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-seq-sse3' @@ -12,7 +14,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb index fcb3f9519669783fb3e8fa5b449c28550ea20c76..4d4122a29d2d6ecf1e0bf2ebe5562058f9227598 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-hybrid-sse3' @@ -13,7 +15,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-HYBRID-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb index 1ab26c1959a039da3c18d06d8670b58e8995f60d..bb28e8240e3876b6ca1af521c576f3fee5ee4a6a 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mpi-sse3' @@ -13,7 +15,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-MPI-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb index 751b63145bf6f20be6a093e37e4cd0a9871fa515..9768fc2a61bf0ab392c688512fc567b80ae47fb7 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mt-sse3' @@ -12,7 +14,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-PTHREADS-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb index 81d7fc42aa2827264fbb3365f2eb719eb85495e4..6c06107ea39ab6d62175eff4fcc4a0cd652923f8 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-seq-sse3' @@ -12,7 +14,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb index fd75ea47898a17e2baa2d6dee604f450d4a8ea5f..c8becaa3bbb0cf6a00923be4480f5f5973465ed7 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-hybrid-sse3' @@ -13,7 +15,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-HYBRID-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb index 044560baef5120f7fc2ff547e43ed33b4e396592..e759597ee18693de988d367700810c6bd0064cf9 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mpi-sse3' @@ -13,7 +15,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-MPI-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb index 6fd9becfaf70541cc8ab8c65700aad0d436e71f2..4dc53e2ba92437e1ae0b137416daa070d9ed7ef3 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mt-sse3' @@ -12,7 +14,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-PTHREADS-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb index 41a221382d4d88f6237722c6abbb7e41be668018..b257e1623324f463a95c621e4c5c5efce40029bd 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-seq-sse3' @@ -12,7 +14,7 @@ sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb index 414d248f88d1edecab1088f3573982e8e0fdaf69..e836b4e2bd66d439879a565a73f1436fd52c8ef9 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-hybrid-sse3' @@ -14,7 +16,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-HYBRID-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb index 5cce1d9e8d81d7985ef8913d6d014777085d031f..b5fb5192305222e595e4398f4a35194da298db48 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mpi-sse3' @@ -14,7 +16,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-MPI-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb index d32eb48d07791330fe0487fd0246895a559e3a30..25df746f3e56f836fda176f538ec8dd1fcb833f0 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mt-sse3' @@ -13,7 +15,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-PTHREADS-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb index f75e388a6bcec6b3279399a99db0dc4ff574cfd8..46179d71f4e8fe37195c8cb3818e953b82a34c76 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-seq-sse3' @@ -13,7 +15,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb index a09d77066a7905ef01dc24aa5f46f40d555b0aaf..e82295aeaaf9156d726557ac13eca3e408fc81ca 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-hybrid-sse3' @@ -14,7 +16,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.HYBRID.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-HYBRID-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-HYBRID-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb index 7639ab27aea578be2922df2748090a7503141e3d..dc746f9bc03a7e91d2988c57f737236c6cd41616 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mpi-sse3' @@ -14,7 +16,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.MPI.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-MPI-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-MPI-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb index 7c92a0771938716bd39b93938fcd8f06716e0a9c..6c8a50bbe3c5c95f7dcbe092faf0133b9ce6a6f8 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mt-sse3' @@ -13,7 +15,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.PTHREADS.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-PTHREADS-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-PTHREADS-SSE3"], diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb index 2a92fb5d711373bb7294d6467c47b75cf83ba379..9fb4191bd03ee782d149de22d2ad3ec96a743636 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-seq-sse3' @@ -13,7 +15,7 @@ source_urls = ['https://github.com/stamatak/standard-RAxML/archive/'] skipsteps = ['configure', 'install'] -makeopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' +buildopts = '-f Makefile.SSE3.gcc CC="$CC" && mkdir -p %(installdir)s/bin && cp raxmlHPC-SSE3 %(installdir)s/bin' sanity_check_paths = { 'files': ["bin/raxmlHPC-SSE3"], diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 107caabf86f3134e39059df56ac01fa88f5d8229..1fd62ac72d9368ae136ebbf15e0e471789a27d18 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'RCS' version = '5.7' diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index d2cd389f5e8017f39d5365a59afcca7aaf5a561c..ff4020095bb22c19115426a6a2120d45717eab67 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'RCS' version = '5.7' diff --git a/easybuild/easyconfigs/r/RDP-Classifier/RDP-Classifier-2.7-Java-1.7.0_60.eb b/easybuild/easyconfigs/r/RDP-Classifier/RDP-Classifier-2.7-Java-1.7.0_60.eb new file mode 100644 index 0000000000000000000000000000000000000000..4e45b17fd870130af00b99fe6c0decdbb3354c48 --- /dev/null +++ b/easybuild/easyconfigs/r/RDP-Classifier/RDP-Classifier-2.7-Java-1.7.0_60.eb @@ -0,0 +1,31 @@ +easyblock = 'Tarball' + +name = 'RDP-Classifier' +version = '2.7' + +homepage = 'http://sourceforge.net/projects/rdp-classifier' +description = """The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic + assignments from domain to genus, with confidence estimates for each assignment.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['rdp_classifier_%(version)s.zip'] + +java = 'Java' +javaver = '1.7.0_60' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +modextrapaths = { + 'CLASSPATH': 'dist/classifier.jar', + 'RDP_JAR_PATH': 'dist/classifier.jar', +} + +sanity_check_paths = { + 'files': ['dist/classifier.jar'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5101540bd39ba4e272aeb9e2269aea6438dca0d6 --- /dev/null +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'RELION' +version = '1.3' + +homepage = 'http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page' +description = """RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer + program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class + averages in electron cryo-microscopy (cryo-EM).""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['RELION-%(version)s_fltk-config.patch'] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.3.0'), +] +dependencies = [ + ('FLTK', '1.3.2'), + ('libX11', '1.6.2', pythonversion), + ('fontconfig', '2.11.1'), + ('libXft', '2.3.2'), + ('libXext', '1.3.2', pythonversion), + ('libXinerama', '1.1.3'), +] + +# RELION expects FLTK to be in external/fltk-1.3.0 +configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] +buildopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' +installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " + +sanity_check_paths = { + 'files': ['bin/relion'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7b003f1cbf188be766c193f8b77f15077203d1ec --- /dev/null +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'RELION' +version = '1.3' + +homepage = 'http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page' +description = """RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer + program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class + averages in electron cryo-microscopy (cryo-EM).""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['RELION-%(version)s_fltk-config.patch'] + +pythonversion = '-Python-2.7.8' + +builddependencies = [ + ('xextproto', '7.3.0'), +] +dependencies = [ + ('FFTW', '3.3.4'), + ('FLTK', '1.3.2'), + ('libX11', '1.6.2', pythonversion), + ('fontconfig', '2.11.1'), + ('libXft', '2.3.2'), + ('libXext', '1.3.2', pythonversion), + ('libXinerama', '1.1.3'), +] + +# RELION expects FLTK to be in external/fltk-1.3.0 +configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] +buildopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' +# users expect the maingui binary to be called relion +installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " + + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3_fltk-config.patch b/easybuild/easyconfigs/r/RELION/RELION-1.3_fltk-config.patch new file mode 100644 index 0000000000000000000000000000000000000000..3d8ab1cc58cb3cafa2f874cb2967a6b0bf50be15 --- /dev/null +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3_fltk-config.patch @@ -0,0 +1,11 @@ +--- configure.orig 2014-08-11 17:18:31.686813247 +0200 ++++ configure 2014-08-11 17:18:39.390957858 +0200 +@@ -15665,7 +15665,7 @@ + #Check for FLTK + # as g++ seems needed and not gcc for compilation, + #just check for presence of fltk-config program +-fltkfile=`pwd`/bin/fltk-config ++fltkfile=`which fltk-config` + as_ac_File=`$as_echo "ac_cv_file_$fltkfile" | $as_tr_sh` + { $as_echo "$as_me:$LINENO: checking for $fltkfile" >&5 + $as_echo_n "checking for $fltkfile... " >&6; } diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index 0823f7f05052ec1845df29d479d9d7c36fd1180b..f2f5762ddaa8048d4a78158e3a089e2879797d5d 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index ad59021972ef2a06c0afa82bee46a69a202bf03e..c2b6fa1b2b9c609a98adb4ab8b41df98bb5e5983 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index 4aa1022f3103f01790638f6e9c5f4cf12cb4ad04..7db22131266334af00df94a8e58d1aef137adc62 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index 61242ed534f218ee9df0083577e03b031ffb7a9d..32c6bcbc4b66d72df75c58d9ba3acbee663d0749 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..74c34689f1fb7452c243a3a8ed7eeb45fa115cd3 --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb @@ -0,0 +1,43 @@ +name = 'ROOT' +version = 'v5.34.18' + +homepage = 'http://root.cern.ch/drupal/' +description = """The ROOT system provides a set of OO frameworks with all the functionality + needed to handle and analyze large amounts of data in a very efficient way.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s_%(version)s.source.tar.gz'] +source_urls = ['ftp://root.cern.ch/root/'] +patches = [ + 'configure_FftwFromMkl_28.patch', + 'ROOT-v5_recent-ifort.patch', +] + +python = 'Python' +pyver = '2.7.6' + +dependencies = [ + ('GSL', '1.16'), + ('Mesa', '7.11.2', '-%s-%s' % (python, pyver)), + ('libxml2', '2.9.1', '-%s-%s' % (python, pyver)), + ('PCRE', '8.12'), + ('CFITSIO', '3.34'), + #('graphviz', '2.34.0'), Graphviz is optional, not in EB yet. + (python, pyver), +] + +# architecture +arch = 'linuxx8664icc' + +# disable features +configopts = ' --disable-xft --disable-xrootd --disable-mysql' +# enable features +configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' +configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' +configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' +configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5_recent-ifort.patch b/easybuild/easyconfigs/r/ROOT/ROOT-v5_recent-ifort.patch new file mode 100644 index 0000000000000000000000000000000000000000..ad687ba67c0eb1eae01bf25e35e7a93184e28c3e --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5_recent-ifort.patch @@ -0,0 +1,11 @@ +--- root/config/Makefile.linuxx8664icc.orig 2013-12-02 17:22:25.630583702 +0100 ++++ root/config/Makefile.linuxx8664icc 2013-12-02 17:22:51.951053273 +0100 +@@ -87,7 +87,7 @@ + F77 = ifort + F77FLAGS = -fPIC + ifeq ($(findstring $(ICC_MAJOR),11 10 9),) +-F77LIBS := -L$(shell which ifort | sed -e 's|bin/intel64/ifort|compiler/lib|') \ ++F77LIBS := -L$(shell which ifort | sed -e 's|bin/intel64/ifort|compiler/lib/intel64|') \ + -lifcore + F77FLAGS += -m64 + else diff --git a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..355b27d3e62b51bdfb109ec069fc67ba9795f823 --- /dev/null +++ b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb @@ -0,0 +1,59 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'RSEQtools' +version = '0.6' + +homepage = 'http://rseqtools.gersteinlab.org' +description = """ A modular framework to analyze RNA-Seq data using compact + and anonymized data summaries.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://archive.gersteinlab.org/proj/rnaseq/rseqtools/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('BLAT', '3.5'), + ('GSL', '1.16'), +] + +# this apps is tricky to compile so we will do everything in prebuildopts +# +# firt define required environment variables +prebuildopts = 'export BIOINFOGSLDIR=$EBROOTGSL && export BIOINFOCONFDIR=conf && ' +# now move to "bios" folder and run "make && make prod". Then come back to root folder +prebuildopts += 'cd bios && make && make prod && cd - && ' +# now move to "mrf" folder, re-export the needed env var and run make +prebuildopts += 'cd mrf && export BIOINFOCONFDIR=../bios/conf/ && ' + +parallel = 1 + +# these are all the binaries compiled in "mrf" folder +binary_files = ["psl2mrf", "bowtie2mrf", "singleExport2mrf", "mrfSubsetByTargetName", + "mrfQuantifier", "mrfAnnotationCoverage", "mrf2wig", "mrf2gff", "mrfSampler", + "mrf2bgr", "wigSegmenter", "mrfMappingBias", "mrfSelectRegion", "mrfSelectSpliced", + "mrfSelectAnnotated", "createSpliceJunctionLibrary", "gff2interval", "export2fastq", + "mergeTranscripts", "interval2gff", "interval2sequences", "bed2interval", + "interval2bed", "mrf2sam", "sam2mrf", "mrfValidate", "bgrQuantifier", + "bgrSegmenter", "mrfCountRegion"] + +files_to_copy = [ + (['mrf/%s' % x for x in binary_files], "bin"), + "LICENSE", "README", "bios", "mrf", "test" +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binary_files], + 'dirs': [] +} + +modextravars = { + 'BIOINFOCONFDIR': '$root/bios/conf', +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0fd6f17e3c0915097b22ac963599d144f1c54cf --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + +name = 'Ruby' +version = '2.1.0' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..32eca44aae4e0274e70b313c4042b78fae9e8a33 --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb @@ -0,0 +1,33 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + +name = 'Ruby' +version = '2.1.5' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..21ca0b75f99b034a99d6b185dcdbaa83f61e46bb --- /dev/null +++ b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'rSeq' +version = '0.2.0' + +homepage = 'http://www-personal.umich.edu/~jianghui/rseq/' +description = """ rSeq is a set of tools for RNA-Seq data analysis. It consists of programs + that deal with many aspects of RNA-Seq data analysis, such as read quality assessment, + reference sequence generation, sequence mapping, gene and isoform expressions (RPKMs) estimation, etc. + There are also many other features that will be gradually added into rSeq in the future. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://www-personal.umich.edu/~jianghui/rseq/download/'] + +files_to_copy = [ + (["rseq", "seqmap"], 'bin') +] + +sanity_check_paths = { + 'files': ["bin/rseq", "bin/seqmap"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f073ec9749dfeba00799770340fde85dcf17c55e --- /dev/null +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'renderproto' +version = '0.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "Xrender protocol and ancillary headers" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs' : [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..34ed4ccca7e3d0564de360ffb0d3e4d59b0d75e7 --- /dev/null +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'renderproto' +version = '0.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "Xrender protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs' : [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/rjags/rjags-3-13-intel-2014b-R-3.1.1.eb b/easybuild/easyconfigs/r/rjags/rjags-3-13-intel-2014b-R-3.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..20b52d9cdae742f84292a7d5807b1ba38ff80cc6 --- /dev/null +++ b/easybuild/easyconfigs/r/rjags/rjags-3-13-intel-2014b-R-3.1.1.eb @@ -0,0 +1,26 @@ +easyblock = 'RPackage' + +name = 'rjags' +version = '3-13' + +homepage = 'http://cran.r-project.org/web/packages/rjags' +description = """The rjags package is an interface to the JAGS library.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/rjags/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.1.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ("JAGS", "3.4.0"), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/r/runjags/runjags-1.2.1-0-intel-2014b-R-3.1.1.eb b/easybuild/easyconfigs/r/runjags/runjags-1.2.1-0-intel-2014b-R-3.1.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..23eb06777144c0c548561835d629283c934cdcd5 --- /dev/null +++ b/easybuild/easyconfigs/r/runjags/runjags-1.2.1-0-intel-2014b-R-3.1.1.eb @@ -0,0 +1,26 @@ +easyblock = 'RPackage' + +name = 'runjags' +version = '1.2.1-0' + +homepage = 'http://cran.r-project.org/web/packages/runjags' +description = """This package provides high-level interface utilities for Just Another Gibbs Sampler (JAGS).""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/rjags/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.1.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ("JAGS", "3.4.0"), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index f3572478a0d0876a07f8204f5c93566f88d01873..495ee12fa8300aff7656baa054e4b39c44c54c8b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -13,9 +13,9 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' -description = """SAM (Sequence Alignment/Map) format is a generic format -for storing large nucleotide sequence alignments.""" +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 53dcf4ed7294ecea79a9fe2626543cefed5deb7e..073affc93bf62d87a903cff1aefe15e35f4ccaff 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -13,9 +13,9 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' -description = """SAM (Sequence Alignment/Map) format is a generic format -for storing large nucleotide sequence alignments.""" +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index ba1e0ff6dc732cd3397a2fbdf5e73571107055ab..b9570c368a8f5e5640d8f51153a4936a817fdc98 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -13,9 +13,9 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' -description = """SAM (Sequence Alignment/Map) format is a generic format -for storing large nucleotide sequence alignments.""" +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index 28ebd82fc43c7000801ce5d0bb937755826f99bc..5b8825becb9a2f1730e2b426d98820dea5dafabc 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -13,10 +13,9 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' -description = """SAM (Sequence Alignment/Map) format is a generic format -for storing large nucleotide sequence alignments.""" - +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index 3f46ced5c1ea320a9fa4003c5b013daba866f804..e632ad1cd5caf5bc2d499fee5ecb0b26249f9340 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -13,9 +13,9 @@ name = 'SAMtools' version = '0.1.19' -homepage = 'http://samtools.sourceforge.net/' -description = """SAM (Sequence Alignment/Map) format is a generic format -for storing large nucleotide sequence alignments.""" +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index dd1a4bc9ddeae52d77e24b2daff3a2d9405dcd33..d1a314837966c07fca5e001438ad1639a0545b16 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -13,9 +13,9 @@ name = 'SAMtools' version = '0.1.19' -homepage = 'http://samtools.sourceforge.net/' -description = """SAM (Sequence Alignment/Map) format is a generic format -for storing large nucleotide sequence alignments.""" +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ff9ad1f2da3a2749f584a34cfd339ea83f781173 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb @@ -0,0 +1,21 @@ +name = 'SAMtools' +version = '0.1.19' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [('http://sourceforge.net/projects/samtools/files/%(namelower)s/%(version)s', 'download')] + +patches = ['SAMtools-%(version)s_Makefile-ncurses.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a7bfe7aa5180bdbe2c3d38820135c028a99ecc6e --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +name = 'SAMtools' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..48efe7e0a744ef5152580ddc8ea865e8793fe98c --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'SAMtools' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [('http://sourceforge.net/projects/samtools/files/%s/%s' % (name.lower(), version), 'download')] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9993040cdb01438adf3b44db6339cba883e4c31f --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'SAMtools' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..ea4be326bd6f8a9eb1af0637e32ae8addd31bd39 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch @@ -0,0 +1,94 @@ +diff -ru samtools-1.1.orig/Makefile samtools-1.1/Makefile +--- samtools-1.1.orig/Makefile 2014-09-23 14:44:16.000000000 +0000 ++++ samtools-1.1/Makefile 2014-11-14 19:51:50.025846629 +0000 +@@ -36,9 +36,9 @@ + cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o \ + faidx.o stats.o stats_isize.o bam_flags.o bam_split.o \ + bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o +-INCLUDES= -I. -I$(HTSDIR) +-LIBCURSES= -lcurses # -lXCurses +- ++INCLUDES= -I$(EBROOTNCURSES)/include -I$(EBROOTZLIB)/include -I. -I$(HTSDIR) ++LIBCURSES= -L$(EBROOTNCURSES)/lib -lcurses # -lXCurses ++ZLIB= -L$(EBROOTZLIB)/lib -lz + prefix = /usr/local + exec_prefix = $(prefix) + bindir = $(exec_prefix)/bin +@@ -122,7 +122,7 @@ + $(AR) -csru $@ $(LOBJS) + + samtools: $(AOBJS) libbam.a $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm $(ZLIB) + + bam_h = bam.h $(htslib_bgzf_h) $(htslib_sam_h) + bam2bcf_h = bam2bcf.h $(htslib_vcf_h) errmod.h +@@ -193,31 +193,31 @@ + + + test/merge/test_bam_translate: test/merge/test_bam_translate.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_bam_translate.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_bam_translate.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_pretty_header: test/merge/test_pretty_header.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_pretty_header.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_pretty_header.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_rtrans_build: test/merge/test_rtrans_build.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_rtrans_build.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_rtrans_build.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_trans_tbl_init: test/merge/test_trans_tbl_init.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_trans_tbl_init.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_trans_tbl_init.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_count_rg: test/split/test_count_rg.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_count_rg.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_count_rg.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_expand_format_string: test/split/test_expand_format_string.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_expand_format_string.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_expand_format_string.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_filter_header_rg: test/split/test_filter_header_rg.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_filter_header_rg.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_filter_header_rg.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_parse_args: test/split/test_parse_args.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_parse_args.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_parse_args.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/vcf-miniview: test/vcf-miniview.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/vcf-miniview.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/vcf-miniview.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test_test_h = test/test.h $(htslib_sam_h) + +@@ -236,22 +236,22 @@ + # misc programs + + misc/ace2sam: misc/ace2sam.o +- $(CC) $(LDFLAGS) -o $@ misc/ace2sam.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/ace2sam.o $(LDLIBS) $(ZLIB) + + misc/maq2sam-short: misc/maq2sam-short.o +- $(CC) $(LDFLAGS) -o $@ misc/maq2sam-short.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/maq2sam-short.o $(LDLIBS) $(ZLIB) + + misc/maq2sam-long: misc/maq2sam-long.o +- $(CC) $(LDFLAGS) -o $@ misc/maq2sam-long.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/maq2sam-long.o $(LDLIBS) $(ZLIB) + + misc/md5fa: misc/md5fa.o misc/md5.o +- $(CC) $(LDFLAGS) -o $@ misc/md5fa.o misc/md5.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/md5fa.o misc/md5.o $(LDLIBS) $(ZLIB) + + misc/md5sum-lite: misc/md5sum-lite.o + $(CC) $(LDFLAGS) -o $@ misc/md5sum-lite.o $(LDLIBS) + + misc/wgsim: misc/wgsim.o +- $(CC) $(LDFLAGS) -o $@ misc/wgsim.o $(LDLIBS) -lm -lz ++ $(CC) $(LDFLAGS) -o $@ misc/wgsim.o $(LDLIBS) -lm $(ZLIB) + + misc/ace2sam.o: misc/ace2sam.c $(HTSDIR)/htslib/kstring.h $(HTSDIR)/htslib/kseq.h + misc/md5.o: misc/md5.c misc/md5.h diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..f442020c76eb4e88fd0ab75f8e512439db8a9a25 --- /dev/null +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2015 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'SCALCE' +version = '2.7' + +homepage = 'http://scalce.sourceforge.net/Home' +description = """SCALCE [skeɪlz] is a FASTQ compression tool that uses locally consistet parsing + to obtain better compression rate. SCALCE has been specifically designed for Illumina reads but it can + handle other technologies (that generate base pair reads) if the read length is the same throughout the file.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = ['%(namelower)s-v%(version)s-src.tar.gz'] +source_urls = [SOURCEFORGE_SOURCE] + +dependencies = [('bzip2', '1.0.6')] + +preconfigopts = 'cd zlib-1.2.8 &&' +buildopts = '-C zlib-1.2.8 && make all' + +files_to_copy = [(['scalce'], 'bin')] + +sanity_check_paths = { + 'files': ["bin/scalce"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..80933ffd85bb6444d6bc8b16be7f9958cc42da8a --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb @@ -0,0 +1,14 @@ +name = 'SCOTCH' +version = '6.0.0_esmumps' + +homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://gforge.inria.fr/frs/download.php/31832/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..787bd5cae8d9e62b30cdd0db5cd313dd4cadb8d4 --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb @@ -0,0 +1,14 @@ +name = 'SCOTCH' +version = '6.0.0_esmumps' + +homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'pic': True} + +source_urls = ['https://gforge.inria.fr/frs/download.php/31832/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c3124c78ca5801355c2de0e31406ef41f14d2e2b --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb @@ -0,0 +1,14 @@ +name = 'SCOTCH' +version = '6.0.0_esmumps' + +homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = ['https://gforge.inria.fr/frs/download.php/31832/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index e7a3bbe47aa63ce34961c78a25298d92f5e39d71..b97860755cfac80a288c20b387702ccef0f079ca 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'SDCC' version = '3.3.0' diff --git a/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb b/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..afd09dc3ccbd90a316270540ecfd88644dccf105 --- /dev/null +++ b/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'SDPA' +version = '7.3.8' + +homepage = 'http://sdpa.sourceforge.net' +description = """SDPA is one of the most efficient and stable software packages +for solving SDPs based on the primal-dual interior-point method.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +sources = ['%(namelower)s_%(version)s.tar.gz'] +source_urls = [SOURCEFORGE_SOURCE] + +dependencies = [('MUMPS', '4.10.0', '-parmetis')] + +configopts = ' --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' +configopts += ' --with-mumps-libs="-ldmumps -lmumps_common -lpord -lparmetis -lmetis' +configopts += ' -lesmumps -lptscotch -lscotcherr -lscotch -lifcore $LIBSCALAPACK"' + +sanity_check_paths = { + 'files': ['bin/sdpa', 'lib/libsdpa.a'], + 'dirs': [] +} + +# seems to fail if not build serially +parallel = 1 + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..2bba2e77c88f80f45d30d31efc7314674ca314bd --- /dev/null +++ b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "CMakeMake" + +name = 'SIBELia' +version = '3.0.4' + +homepage = 'http://bioinf.spbau.ru/en/sibelia' +description = """ Sibelia: A comparative genomics tool: It assists biologists in analysing + the genomic variations that correlate with pathogens, or the genomic changes that help + microorganisms adapt in different environments. Sibelia will also be helpful for the + evolutionary and genome rearrangement studies for multiple strains of microorganisms. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [('http://sourceforge.net/projects/sibelia-bio/files/', 'download')] +sources = ['Sibelia-%(version)s-Source.tar.gz'] + +builddependencies = [('CMake', '2.8.12')] + +start_dir = 'src' + +separate_build_dir = True + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["C-Sibelia.py", "Sibelia", "snpEffAnnotate.py"]], + 'dirs': [''], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..5cf6c32e4418bb4e96374270c28621a039a3a1c6 --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'SOAPaligner' +version = '2.21' +versionsuffix = '_Linux-x86_64' + +homepage = 'http://soap.genomics.org.cn/soapaligner.html' +description = """ SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide + Analysis Package). It is an updated version of SOAP software for short oligonucleotide + alignment. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://soap.genomics.org.cn/down/'] +sources = ['soap%(version)srelease.tar.gz'] + +# only Linux-x86_64 binaries are provided so we skip build step. +# We just use the MakeCp block to copy each file to the right destination folder +skipsteps = ['build'] + +files_to_copy = [ + (["soap", "2bwt-builder"], 'bin'), + (["soap.1", "soap.man"], 'man/man1'), + "NOTE", "release" +] + +sanity_check_paths = { + 'files': ["bin/soap", "bin/2bwt-builder"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb index 1a926e770a577d96cdb5d7426f66b8ff819e2533..8da8e28b172502449fc4812c52d887fa13b982c8 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb index 66c65749d0498bf75b3a0ba26e79f31c5f0e093c..05651770f255c298fa1280a02b6d5a26e05a4455 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb index 737c3233c46c19a37776a1e7e96a929372747c14..3fda9e525f55226c70753bbd66a11ce320bf1dac 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb index 201576a5b484d65c98e54cfce0c4e9e68d99fe77..0ce4a98f03a7ce0941e95ac157a0afdc9f52c69f 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-fix-unistd-includes.patch b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-fix-unistd-includes.patch new file mode 100644 index 0000000000000000000000000000000000000000..b5d76889db740c01129fee45e5e97f1e4748937e --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-fix-unistd-includes.patch @@ -0,0 +1,10 @@ +--- SOAPdenovo2-src-r240.orig/sparsePregraph/inc/stdinc.h 2013-07-09 05:46:52.000000000 +0200 ++++ SOAPdenovo2-src-r240/sparsePregraph/inc/stdinc.h 2014-04-14 10:07:31.009191162 +0200 +@@ -32,6 +32,7 @@ + #include + #include + #include ++#include + using namespace std; + + diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9a31af40cdf96f3061732c3220e788dba50ecffd --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb @@ -0,0 +1,40 @@ +# With <3 for EasyBuild +# +# EasyConfig for SOAPdenovo2: +# ---------------------------------------------------------------------------- +# Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Petar Forai +# ---------------------------------------------------------------------------- + +easyblock = "MakeCp" + +name = 'SOAPdenovo2' +version = 'r240' + +homepage = 'http://soap.genomics.org.cn/index.html' +description = """SOAPdenovo is a novel short-read assembly method that can build a + de novo draft assembly for human-sized genomes. The program is specially designed to + assemble Illumina short reads. It creates new opportunities for building reference + sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. + SOAPdenovo2 is the successor of SOAPdenovo.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-src-%(version)s.tgz'] + +patches = ['SOAPdenovo2-fix-unistd-includes.patch'] + +# parallel build is broken +maxparallel = 1 + +files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..98fc2a7d4805c1a826db1f47610191c9f097fe6c --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb @@ -0,0 +1,40 @@ +# With <3 for EasyBuild +# +# EasyConfig for SOAPdenovo2: +# ---------------------------------------------------------------------------- +# Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Petar Forai +# ---------------------------------------------------------------------------- + +easyblock = "MakeCp" + +name = 'SOAPdenovo2' +version = 'r240' + +homepage = 'http://soap.genomics.org.cn/index.html' +description = """SOAPdenovo is a novel short-read assembly method that can build a + de novo draft assembly for human-sized genomes. The program is specially designed to + assemble Illumina short reads. It creates new opportunities for building reference + sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. + SOAPdenovo2 is the successor of SOAPdenovo.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-src-%(version)s.tgz'] + +patches = ['SOAPdenovo2-fix-unistd-includes.patch'] + +# parallel build is broken +maxparallel = 1 + +files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f0d8353aba40358ca43eebab9092fb7af47eaae --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb @@ -0,0 +1,40 @@ +# With <3 for EasyBuild +# +# EasyConfig for SOAPdenovo2: +# ---------------------------------------------------------------------------- +# Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Petar Forai +# ---------------------------------------------------------------------------- + +easyblock = "MakeCp" + +name = 'SOAPdenovo2' +version = 'r240' + +homepage = 'http://soap.genomics.org.cn/index.html' +description = """SOAPdenovo is a novel short-read assembly method that can build a + de novo draft assembly for human-sized genomes. The program is specially designed to + assemble Illumina short reads. It creates new opportunities for building reference + sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. + SOAPdenovo2 is the successor of SOAPdenovo.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-src-%(version)s.tgz'] + +patches = ['SOAPdenovo2-fix-unistd-includes.patch'] + +# parallel build is broken +maxparallel = 1 + +files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPec/SOAPec-2.02-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SOAPec/SOAPec-2.02-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..fa8d7bd1e5c939c8a12708950e05b03c8c0d4427 --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPec/SOAPec-2.02-ictce-5.5.0.eb @@ -0,0 +1,25 @@ +easyblock = "MakeCp" + +name = 'SOAPec' +version = '2.02' + +homepage = 'http://soap.genomics.org.cn/index.html' +description = """SOAPec is a short-read correction tool and part of SOAPdenovo. + It is specially designed to correct Illum ina GA short reads.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://download.sourceforge.net/soapdenovo2'] +sources = ['%(name)s_src_v%(version)s.tgz'] + +dependencies = [('zlib', '1.2.7')] + +files_to_copy = [(['src/*/Corrector_AR', 'src/*/Corrector_HA', 'src/*/KmerFreq_AR', 'src/*/KmerFreq_HA'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/Corrector_AR', 'bin/Corrector_HA', 'bin/KmerFreq_AR', 'bin/KmerFreq_HA'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f8b0fa21e01623fd57e4ce26f8b1ee5cb8695971 --- /dev/null +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "CMakeMake" + +name = 'SPAdes' +version = '3.0.0' + +homepage = 'http://bioinf.spbau.ru/en/spades' +description = """ Genome assembler for single-cell and isolates data sets """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://spades.bioinf.spbau.ru/release%(version)s/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('CMake', '2.8.12')] + +dependencies = [('zlib', '1.2.8')] + +start_dir = 'src' + +separate_build_dir = True + +sanity_check_commands = [('spades.py', '--test')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bwa-spades", "dipspades", "dipspades.py", + "hammer", "ionhammer", "spades", "spades.py"]], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..59c84e5a287b01575ec5a9507e7fd99d5cf2cf06 --- /dev/null +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "CMakeMake" + +name = 'SPAdes' +version = '3.1.0' + +homepage = 'http://bioinf.spbau.ru/en/spades' +description = """ Genome assembler for single-cell and isolates data sets """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://spades.bioinf.spbau.ru/release%(version)s/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('CMake', '2.8.12')] + +dependencies = [('zlib', '1.2.8')] + +start_dir = 'src' + +separate_build_dir = True + +sanity_check_commands = [('spades.py', '--test')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bwa-spades", "dipspades", "dipspades.py", + "hammer", "ionhammer", "spades", "spades.py"]], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0_fix-metropolis-test.patch b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0_fix-metropolis-test.patch new file mode 100644 index 0000000000000000000000000000000000000000..0d3290ee928a3ba9966ce7c0415aec46c08a8dfc --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0_fix-metropolis-test.patch @@ -0,0 +1,30 @@ +diff -ru sprng2.0.orig/TESTS/metropolis.c sprng2.0/TESTS/metropolis.c +--- sprng2.0.orig/TESTS/metropolis.c 1999-06-29 18:42:11.000000000 +0200 ++++ sprng2.0/TESTS/metropolis.c 2014-10-11 13:03:19.742813305 +0200 +@@ -154,7 +154,7 @@ + + #ifdef SYNC + printf("\n\tStreams are synchronized!\n"); +- #elif !SYNC ++ #else + printf("\n\tStreams are not synchronized!\n"); + #endif + printf(" \tEnergy\t\tEnergy_error\tSigma_Energy\tCv\t\tCv_error\tSigma_Cv\n"); +@@ -169,7 +169,7 @@ + dE = energy_difference(k); + #ifdef SYNC + if(expJ[dE]>sprng(genptr[k])){ +-#elif !SYNC ++#else + if(dE<=0 || expJ[dE]>sprng(genptr[k])){ + #endif + energy += dE; +@@ -321,7 +321,7 @@ + dE = energy_difference(k); + #ifdef SYNC + if(expJ[dE]>sprng(genptr[k])) +-#elif !SYNC ++#else + if(dE<=0 || expJ[dE]>sprng(genptr[k])) + #endif + { diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..762b8d99957af08f59524c8893af9cdb094c88c5 --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'SPRNG' +version = '2.0a' + +homepage = 'http://www.sprng.org/' +description = "Scalable Parallel Pseudo Random Number Generators Library" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.sprng.org/Version2.0/'] +sources = ['%(namelower)s%(version)s.tgz'] + +patches = ['SPRNG-2.0_fix-metropolis-test.patch'] + +dependencies = [('GMP', '5.1.3')] + +buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' + +# does not support parallel build +parallel = 1 + +files_to_copy = [ + (['lib/libsprng.a'], 'lib'), + (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), +] + +sanity_check_paths = { + 'files': ["lib/libsprng.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..3d66a9ad8c812da537f1c5009c5ae549007bf7b3 --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'SPRNG' +version = '2.0a' + +homepage = 'http://www.sprng.org/' +description = "Scalable Parallel Pseudo Random Number Generators Library" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.sprng.org/Version2.0/'] +sources = ['%(namelower)s%(version)s.tgz'] + +patches = ['SPRNG-2.0_fix-metropolis-test.patch'] + +dependencies = [('GMP', '5.1.3')] + +buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' + +# does not support parallel build +parallel = 1 + +files_to_copy = [ + (['lib/libsprng.a'], 'lib'), + (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), +] + +sanity_check_paths = { + 'files': ["lib/libsprng.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b67d316a26f1d0c93dc77e38e244c07a873b080 --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'SPRNG' +version = '2.0a' + +homepage = 'http://www.sprng.org/' +description = "Scalable Parallel Pseudo Random Number Generators Library" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.sprng.org/Version2.0/'] +sources = ['%(namelower)s%(version)s.tgz'] + +patches = ['SPRNG-2.0_fix-metropolis-test.patch'] + +dependencies = [('GMP', '5.1.3')] + +buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' + +# does not support parallel build +parallel = 1 + +files_to_copy = [ + (['lib/libsprng.a'], 'lib'), + (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), +] + +sanity_check_paths = { + 'files': ["lib/libsprng.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..4df722877b6bedba06d1c157b1456edd7eb8ea6d --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'SPRNG' +version = '2.0b' + +homepage = 'http://www.sprng.org/' +description = "Scalable Parallel Pseudo Random Number Generators Library" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.sprng.org/Version2.0/'] +sources = ['%(namelower)s%(version)s.tar.gz'] + +patches = ['SPRNG-2.0_fix-metropolis-test.patch'] + +dependencies = [('GMP', '5.1.3')] + +buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' + +# does not support parallel build +parallel = 1 + +files_to_copy = [ + (['lib/libsprng.a'], 'lib'), + (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), +] + +sanity_check_paths = { + 'files': ["lib/libsprng.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ba3405a6f52d1826624cd4de9a490cc09663f1d5 --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'SPRNG' +version = '2.0b' + +homepage = 'http://www.sprng.org/' +description = "Scalable Parallel Pseudo Random Number Generators Library" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.sprng.org/Version2.0/'] +sources = ['%(namelower)s%(version)s.tar.gz'] + +patches = ['SPRNG-2.0_fix-metropolis-test.patch'] + +dependencies = [('GMP', '5.1.3')] + +buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' + +# does not support parallel build +parallel = 1 + +files_to_copy = [ + (['lib/libsprng.a'], 'lib'), + (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), +] + +sanity_check_paths = { + 'files': ["lib/libsprng.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..435de49323320346b15272eb5f61d5d0105fb298 --- /dev/null +++ b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb @@ -0,0 +1,34 @@ +easyblock = 'MakeCp' + +name = 'SPRNG' +version = '2.0b' + +homepage = 'http://www.sprng.org/' +description = "Scalable Parallel Pseudo Random Number Generators Library" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.sprng.org/Version2.0/'] +sources = ['%(namelower)s%(version)s.tar.gz'] + +patches = ['SPRNG-2.0_fix-metropolis-test.patch'] + +dependencies = [('GMP', '5.1.3')] + +buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' + +# does not support parallel build +parallel = 1 + +files_to_copy = [ + (['lib/libsprng.a'], 'lib'), + (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), +] + +sanity_check_paths = { + 'files': ["lib/libsprng.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index 0383c6ec88b2dd7150e2b7a5688129c7f201dad6..e74d6f7a39766fa092500382030b609632320ed2 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.7.17' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index 05f97c62b39d04b590996aadfbcd2ecb4a4f571a..30d45082a108519460d3aa99726ecbecdbbd15c8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.7.17' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index 97f7c6bd766c94b150fd058be385f117043315b2..c08623a5a59b7af21c42bac4f65a93584f6e1ae9 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.8.1' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index 2d878020229a4f731af96dc48da74e3ce37086a5..05b5ca95c117dd1c498dd1a5f1c40f969dcb1b24 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.8.1' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f0ed15f86c2fc14128c7d7ffa75499170df4e4a2 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.6' + +homepage = 'http://www.sqlite.org/' +description = "SQLite: SQL Database Engine in a C Library" + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2014/'] +sources = ['sqlite-autoconf-%s0%s0%s00.tar.gz' % tuple(version.split('.'))] # very weird way to calculate your filename + +toolchain = {'name': 'intel', 'version': '2014b'} + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.2'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f5e96601f1c29872133cd8ebac5fb30ebf970b49 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'intel', 'version': '2015a'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SRA-Tookit/SRA-Toolkit-2.3.5-centos_linux64.eb b/easybuild/easyconfigs/s/SRA-Tookit/SRA-Toolkit-2.3.5-centos_linux64.eb new file mode 100644 index 0000000000000000000000000000000000000000..fc325c12fd412351c3880a9ffbe661bd0f1ff047 --- /dev/null +++ b/easybuild/easyconfigs/s/SRA-Tookit/SRA-Toolkit-2.3.5-centos_linux64.eb @@ -0,0 +1,26 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'Tarball' + +name = 'SRA-Toolkit' +version = '2.3.5' +versionsuffix = '-centos_linux64' + +homepage = 'http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=std' +description = """ The NCBI SRA Toolkit enables reading (dumping) of sequencing files + from the SRA database and writing (loading) files into the .sra format """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/%(version)s/'] +sources = ['sratoolkit.%(version)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["sra-stat", "sra-sort", "srapath", "bam-load"]], + 'dirs': ["example", "schema"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb b/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ede241886da5e42eb7b568a4f8243254148ae0ac --- /dev/null +++ b/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb @@ -0,0 +1,37 @@ +easyblock = 'CmdCp' + +name = 'STREAM' +version = '5.10' + +homepage = 'http://www.cs.virginia.edu/stream/' +description = """The STREAM benchmark is a simple synthetic benchmark program that measures sustainable + memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True} + +source_urls = ['http://www.cs.virginia.edu/stream/FTP/Code/'] +sources = ['%(namelower)s.c'] +checksums = ['dd2941e3a28ff90a79b571273c10aacf'] + +skipsteps = ['source'] + +# 10 million array elements (1000 runs): requires ~224MB of memory +cmds_str = "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=10000000 -DNTIMES=1000 -o stream_1Kx10M; " +# 100 million array elements (1000 runs): requires ~2.2GiB of memory +cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=100000000 -DNTIMES=1000 -o stream_1Kx100M; " +# 1 billion array elements (1000 runs): requires ~22.4 GiB of memory +cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=1000000000 -DNTIMES=1000 -o stream_1Kx1B; " + +cmds_map = [('stream.c', cmds_str)] + +files_to_copy = [(['stream_1Kx10M', 'stream_1Kx100M', 'stream_1Kx1B'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/stream_1Kx10M', 'bin/stream_1Kx100M', 'bin/stream_1Kx1B'], + 'dirs': [], +} + +tests = ['%(installdir)s/bin/stream_1Kx10M'] + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb similarity index 81% rename from easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10.eb rename to easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb index fc4e13aba275b008ceb6679920a73bbc4b692cd4..bf5aca83719e4d7ad3b9a4b66eabd26a2e0c5bc0 100644 --- a/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb @@ -21,8 +21,8 @@ builddependencies = [ ('ed', '1.9'), ] -premakeopts = 'make INCLUDE="-I. -I$EBROOTGCC/lib/gcc/x86_64-unknown-linux-gnu/$EBVERSIONGCC/include" depend && ' -makeopts = ' && mv surf surf_%s' % ARCH +prebuildopts = 'make INCLUDE="-I. -I$EBROOTGCC/lib/gcc/x86_64-unknown-linux-gnu/$EBVERSIONGCC/include" depend && ' +buildopts = ' && mv surf surf_%s' % ARCH files_to_copy = [(['surf_%s' % ARCH], "bin")] diff --git a/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb b/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb index 711aeda3a7cbf8f0960e517ad41efa22741b1b4c..c10863bf7083b5b7801f0c19dfcdc0e12cf03705 100644 --- a/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb +++ b/easybuild/easyconfigs/s/SURF/SURF-1.0-ictce-5.3.0-LINUXAMD64.eb @@ -21,8 +21,8 @@ builddependencies = [ ('ed', '1.9'), ] -premakeopts = 'make INCLUDE="-I. -I$EBROOTGCC/lib/gcc/x86_64-unknown-linux-gnu/$EBVERSIONGCC/include" depend && ' -makeopts = ' && mv surf surf_%s' % ARCH +prebuildopts = 'make INCLUDE="-I. -I$EBROOTGCC/lib/gcc/x86_64-unknown-linux-gnu/$EBVERSIONGCC/include" depend && ' +buildopts = ' && mv surf surf_%s' % ARCH files_to_copy = [(['surf_%s' % ARCH], "bin")] diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 4fdd24ef9e035377aa95de60ee37dfe97ef772c1..e586e8833d7c7ee5d6c3193f2eaf426668066079 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb index fbc5ef3f1fc145e573f50ceddb639ab15543a65a..f6f7b55c8d865750693540a6dee81cbf820cffb2 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb index 57d5bf84e71ff08ba0ea9a472d465dc348b6099a..9c2ffd60e1d3f61aa5f0708629af04caeb8e0c6b 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb index 534ef903d83975674cd2554bb0ac52b707ad6c23..88cc8c6e980487a3b883d8d0cec388430345fb4e 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb @@ -17,8 +17,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..3d23a1f84ecb2155161d2a18351a5f3f30e60016 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.2' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.8' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.35'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..5c199680f6574673a3514ba710a5613ac803c7e3 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.3' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.36'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb index 1a4ec0de849c714c683a9dde25561a458f57130a..55cd2babc089c069e03fc4f96deb375f872657b0 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Sablotron' version = '1.0.3' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb index 1ed69df63173fa99fe904eb33a1aa059d6f636f4..db41cb46c7d16b4364771b72acaf210ab5cc81f1 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Sablotron' version = '1.0.3' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb index 12bb8bfb6efca93fe33ad11b5a0e53aec4f4a9a6..3b78da50c78dbf76d5f51269b422a17ab61073a1 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Sablotron' version = '1.0.3' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb similarity index 91% rename from easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb rename to easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 967d7b0bdaa53eedc8a8c237153f4225c55b2864..532548937666f377ddd0b56838ee0aea21acd732 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -5,7 +5,7 @@ homepage = 'http://www.netlib.org/scalapack/' description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} toolchainopts = {'pic': True} source_urls = [homepage] diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5e0e14ba2c64e7905766ad2233ffcb166e204df3 --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines +redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.4.10-no-OFED'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = ['%(namelower)s-%(version)s.tgz'] + +blaslib = 'OpenBLAS' +blasver = '0.2.6' +blassuff = '-LAPACK-3.4.2' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a0a7e12ce3769e1fd5da5567a2782fc070cce8e --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.8' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..b55976ccac840121dba0eb27ab881fd3d738a37d --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.5.14-no-OFED'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.8' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..94cfcc38e51b361f6e73e87483987d5ca769c20a --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.4'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..134eb47e4de2da9b02c4aa66da3eea2caa648f9b --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.9' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.3'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..be40d5d1ed370827e04b76ef3e75e42ec0b4e6bc --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ac55389f2d4c1d8e47cd5b7e52f918b0fe035bd5 --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb @@ -0,0 +1,30 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines +redesigned for distributed memory MIMD parallel computers.""" +toolchain = {'name': 'gpsmpi', 'version': '2014.12'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = ['%(namelower)s-%(version)s.tgz'] + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + + +blaslib = 'OpenBLAS' +blasver = '0.2.12' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, comp)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.8.1-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.8.1-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..2446abe86fddf7ef1e4067cdf965c38675752116 --- /dev/null +++ b/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.8.1-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,31 @@ +easyblock = "PythonPackage" + +name = 'ScientificPython' +version = '2.8.1' + +homepage = 'https://sourcesup.cru.fr/projects/scientific-py/' +description = """ScientificPython is a collection of Python modules for scientific computing. + It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, + and parallelization.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://sourcesup.renater.fr/frs/download.php/2309'] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.8' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +options = {'modulename': 'Scientific'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/Scientific' % pythonshortversion], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb index 428b3a85f673a248e44e6e6a13b3cf050ac715f2..7bc12da16d1cef8cd15932ea0d84003fde059d07 100644 --- a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Silo' version = '4.9.1' diff --git a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb index 672084b8d3519a37c957c1ab4c71755a7dec09e6..84c2cd61ba8095b9374ef61b7b247c547695a81d 100644 --- a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Silo' version = '4.9.1' diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb index e44c0bb845439814d67238b213bf46d0c73572f4..a99ef374cd70174a61af46c94247b45440477ad8 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Stacks' version = '1.03' diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb index cf59c4dd925aca570615d1ce87a0dc3cd07cf257..3275afeb243fd77ab01680e621a041e25866fffc 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Stacks' version = '1.03' diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb index 196d2c22e408ecd7e7fad563d8704d10792b0a7e..a9bfd6bbb414a96641864cb9c96e16fdebe25af7 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Stacks' version = '1.03' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index b67b65616a89d1207ed63eaf683eaaaf3b7f9ce7..08108a8a47e1d6403f76b9ef0ef8fbc718b68e66 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index 3e5a453e42dc21ebd1a5cd487636c355e2133129..bff8348243c9cefbc2d15b4aa148d6eb6fd80ff3 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index 911acb7f10a8e7bb18e4911f12d015605ca4cd49..3dacc81151b0e9d0387e558b0d0c2a0b642fe0f3 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 1c4d3c3cc592e64636d3700c5dcfa4e9c06ede24..03fc7dd37c7ef8aa8570bbb3ff2deac9cde9d644 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-intel-2014b-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-intel-2014b-ParMETIS-4.0.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb9d92e5d52326bdc855fde56f844f13d87dfd5c --- /dev/null +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-intel-2014b-ParMETIS-4.0.3.eb @@ -0,0 +1,18 @@ +name = 'SuiteSparse' +version = '4.2.1' + +homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' +description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} + +source_urls = ['http://www.cise.ufl.edu/research/sparse/SuiteSparse/'] +sources = [SOURCE_TAR_GZ] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) +dependencies = [(parmetis, parmetis_ver)] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..267fa3a4ce772317c7bf02f728be2e81806e5beb --- /dev/null +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb @@ -0,0 +1,20 @@ +name = 'SuiteSparse' +version = '4.4.3' + +homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' +description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} + +source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] +sources = [SOURCE_TAR_GZ] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) +dependencies = [(parmetis, parmetis_ver)] + +maxparallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb index 091eab829e6c27da484de480cdc6363726d28097..e5111378c88c913c66f2a5535f1d69dc0299f2b2 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5647497c3f48baf5f9cc97c555f8e3ba5a45a6bd --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..b6931f92b4b776a556e39e6675f6481fcd067b9a --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb index 2b17a34281a0f10cc671adc422c03161bd1bc03f..428ca53264fa8960e3514a6517c2d4d3eb41993c 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb index ab5385e0812d26c1b1b161b7c7989a513f972bcb..e66bad6682d5a81eebe3d2e107c62cefc7a02622 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..a04f95998388f1630d9fe77142e169964d0606e4 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb index 3fa29ddfd5ff9c8ab56d0b3e0c29d472052eb38b..f3ea085a384e956110c0a47c12b3962bc8d5b0ba 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb index 7a6282360963a1968338ee3676b1a3696adc1417..3b871003de503a517b89de388d2ea6d47c43a30c 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb index 4f24111aecac3796543b57c1f36a5cbe950677fe..508e0b416f5adf083c3fd185c0075fa1b214e47b 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb index 2a25201a86bf17e9d987ea48e21a5a9975deac93..add5a1ec83791c5f6b2f37eb5d36782e50f174bd 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb index 6a5c6496e0c27530943a5555584cead4782b9fdf..b4b3cf902353ecde7a3506362a8cbc321f3f9c48 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb index d2fa1bb4aee4f5c91f9765edb272ac87075ca765..c69f9f0890413376d6d456418cd0ce2814cb0c6c 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..169a754e3c3057b0467e1017eadf91c2a71b378d --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d4845b9932520ecc83d15b627fc4265b6839878 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..989df56176db956aa83104193a7e05b6280a07db --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb index 35decfb686570063bd49f7c4fec7ddd6d49c96f7..4e7d1f550f63573adbae6b4b78acf0a9ad9893fd 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.5.eb similarity index 100% rename from easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.3.eb rename to easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.5.eb diff --git a/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb index 03dbd2a52cf2948ab10eccee212cbb7c611f2031..b861111a29afd3b8e740ed6275369535ec370958 100644 --- a/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'sed' version = '4.2.2' diff --git a/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb b/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb index e36edb5e097d18a4f93d2edef651427259e8cccd..3f2b5b1329889ccf36fdfbffb5ab6ee8d4ec77df 100644 --- a/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'sed' version = '4.2.2' diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f5e2b9d7dd2acef1aa62d85fd27bd2fc1817db61 --- /dev/null +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "segemehl" +version = "0.1.7" + +homepage = 'http://www.bioinf.uni-leipzig.de/Software/segemehl/' +description = """ segemehl is a software to map short sequencer reads to reference genomes. + Unlike other methods, segemehl is able to detect not only mismatches but also insertions + and deletions. Furthermore, segemehl is not limited to a specific read length and is able + to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching + strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads + gziped queries to save both disk and memory space and allows bisulfite sequencing mapping + and split read mapping. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://www.bioinf.uni-leipzig.de/Software/segemehl/'] +sources = ['%s_%s.tar.gz' % (name, version.replace('.','_'))] + +files_to_copy = [(["haarz.x", "lack.x", "segemehl.x"], "bin")] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["haarz.x", "lack.x" , "segemehl.x"]], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb similarity index 100% rename from easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10.eb rename to easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb diff --git a/easybuild/easyconfigs/s/slalib-c/slalib-c-0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/slalib-c/slalib-c-0.0-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..bcedbabed91838fb028a2c01a253ce2df0d5e40f --- /dev/null +++ b/easybuild/easyconfigs/s/slalib-c/slalib-c-0.0-goolf-1.4.10.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'slalib-c' +version = '0.0' + +homepage = 'http://star-www.rl.ac.uk/star/docs/sun67.htx/sun67.html' +description = "SLALIB is a library used by writers of positional-astronomy applications." + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# only available for download per request, cfr. ftp://legacy.gsfc.nasa.gov/heasarc/software/slalib-info.html +sources = [SOURCE_TAR_BZ2] + +skipsteps = ['configure', 'install'] +buildopts = 'INSTALL_DIR=%(installdir)s SLA_LIB_DIR=%(installdir)s/lib/ CCOMPC="$CC" CFLAGC="-c -pedantic $CFLAGS"' + +parallel = 1 + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["include/slalib.h", "include/slamac.h", "lib/libsla.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/slalib-c/slalib-c-0.0-ictce-5.5.0.eb b/easybuild/easyconfigs/s/slalib-c/slalib-c-0.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..05e1d171833b67a7d90fd9e305af55ddc8bbce43 --- /dev/null +++ b/easybuild/easyconfigs/s/slalib-c/slalib-c-0.0-ictce-5.5.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'slalib-c' +version = '0.0' + +homepage = 'http://star-www.rl.ac.uk/star/docs/sun67.htx/sun67.html' +description = "SLALIB is a library used by writers of positional-astronomy applications." + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +# only available for download per request, cfr. ftp://legacy.gsfc.nasa.gov/heasarc/software/slalib-info.html +sources = [SOURCE_TAR_BZ2] + +skipsteps = ['configure', 'install'] +buildopts = 'INSTALL_DIR=%(installdir)s SLA_LIB_DIR=%(installdir)s/lib/ CCOMPC="$CC" CFLAGC="-c -pedantic $CFLAGS"' + +parallel = 1 + +# make sure the gzip, gunzip and compress binaries are available after installation +sanity_check_paths = { + 'files': ["include/slalib.h", "include/slamac.h", "lib/libsla.a"], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e90039667a549ed362140c6908433cdbdf878933 --- /dev/null +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'sparsehash' +version = '2.0.2' + +homepage = 'https://code.google.com/p/sparsehash/' +description = """An extremely memory-efficient hash_map + implementation. 2 bits/entry overhead! The SparseHash library + contains several hash-map implementations, including + implementations that optimize for space or speed.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://sparsehash.googlecode.com/files/'] + +sanity_check_paths = { + 'files': ['include/google/type_traits.h'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..04c3e479884ed83d5d1fa558bd40362afa36de7c --- /dev/null +++ b/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb @@ -0,0 +1,30 @@ +easyblock = "PythonPackage" + +name = "stemming" +version = "1.0" + +homepage = "http://pypi.python.org/pypi/stemming/" +description = """Python implementations of the Porter, Porter2, Paice-Husk, and Lovins stemming algorithms for English.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = "2.7.6" + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +py_short_ver = ".".join(pythonversion.split(".")[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': [("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index febaa53129cff7c7d37ea7bc32678fc16fb66bab..e7a38fab7904dcf624ea28b93dd3e2b9b0947fd2 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'TCC' version = '0.9.26' # altversions = ['0.9.21', '0.9.22', '0.9.23', '0.9.24', '0.9.25', '0.9.26'] # older versions may require more special handling diff --git a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb index c0af373e762bb07ca1a08731a523c7cd277716ff..c6409b2a072bf7a82dcacb86f3817b2bec0f17dc 100644 --- a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'TREE-PUZZLE' version = '5.2' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb index a50ed96b52b3406a4b9c12f7df65337fe0b1a60f..9c40f2197ef0a4c1e301bcc121586ef78fd6a29c 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb index 72c6d238a9afce7d6b5978a391af8129ddd13d1e..69b3b4ca40e0c7fce4c3078e0926bd0c4a45142e 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb index dc4a806ac5caff22658c914d4a4042c8f2f9495d..79b6f833d1343a3441e452bd09ea62223f76dd22 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb index 5b4cb4045a3d0ee2db3b4e8dfba9e30502856510..20133db9039806621ceacdac438793d67860138a 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..726260bf2a6daab896427dd9c599f2d292dcd3e0 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.3.5' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..56aa85437a242eff1d8b19f4329f856ea6823659 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, + suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b513c298d481b2c178942f1afa1c3eae2985143 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'gmvapich2', 'version': '1.7.12'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..974380874601a05313e53b472d39340f4fa39d80 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'gmvolf', 'version': '1.7.12'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb index a6501f1b5e4248009bff09ca34d396f6765f0235..798d6318ab4eafe4e0c76ab0515d954bfd0cc5ac 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb index 27a3950e2af4f0387ceddb4a333ae286bd93a8ea..03ee12ce9ef8f34949bcca05081fd792d14afc7c 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb new file mode 100644 index 0000000000000000000000000000000000000000..cbf87195ac04d1f64cf74124a8677419ee199adc --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'goolfc', 'version': '1.3.12'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb index f668d7842d620c19967136e9ac702e25fcafc17e..6cb79b440c4ada254509301a43eccf0eb7f0f0d0 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb index 4d9a18f5eb75c09526ddd64846504917d6389e3d..d5ce26d0014d820bc17fa9af4e523545ad550d45 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb index 8bb041cf6a3ae6f6d25bd6875b2ba2fe8ac0f5af..202d36aca9606d07c154590006e4b7bb0c961578 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..e9377fec2a303f3ae9becd91c1a14f89684bcb77 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, + suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..6cf99c0db3fae773a176efa90fa3067458a7722d --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, + suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb index 7cb14f77870e5bffb7d66618ca1f5e4f2bab35fd..b3c4b0b321630409768658234f16866b4ddad4c0 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.14' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb index 301ffc1343f3e66de71b903369a93eebe107bfa4..c792463dcf08870ea853092a171a2dc3c1e4a88c 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.14' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb index e52a011d4bc0b5e5916d07ccdc528e047d6dfd11..c6470074d55260bcae63114697ebd4304879c0d9 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.15' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8acb552d5dd0664242333ff4b887d26543966535 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.5.16' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb index 0b20131cf1c541afeaf6d26e4f8516fe2b2daca1..656a26790578281588222b8a20c224057c7b65f1 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.6.1' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb index fa866637b3836b131a71a4fb552fb2994e7f36b4..71cf86f3accaf01d3adbedd5ef57c47e1fb77e4a 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.6.1' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..193e0aaf1c9656bd8497ac0da48c992c45a7219a --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.2' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..fab2dfdb6cd3bd55e6f11b0d67b43c706eef7de8 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index 0704526b696f7d814b54536e7d5cf08eb88040d0..af40f4958d0f9864063f929972bae0f1a58e349e 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb index f8304ecbf6ada01c18da7fd01c11009823cbbe74..859871997e9690ffa56927dad8f5f5d47c798b97 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb index 876f4f86112050e34bc6a241b1092876191559f6..d14a03ca50f051558b49413988f0dc98ef7d7680 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb index c8b93be0dee37cb8da71d8861bc470766c633b0e..181443391bbcc8247d32e25ff35733de2ed49abc 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb index 62961448ebdb0c88f0d982e975075a417ea1c2c5..a1560bc07f3c62adf7d1c95d96fd8ae91ae3bac6 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb index 5d54a71a23fc31c0efd236193930966d5afebb41..d4ed9ad26c5957697e5dc280da0e012ce3672ee9 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb index 22b808acea7add40fabf6c6fde6264f09c6f018f..bfc1a1974a798a1b4dbc9c9c35088c5e32e228ea 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb index 5ebf5b6f916ee35ba74c6109e70559b5601e9052..2dc98b30661eb34001624da313c3f0bcfd225d8d 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb index 6e089d48cac65605c21b5e4181336f0eafe20ef0..51cd57a6f7aaec2f24839ab5d013ea537d03bdde 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb index 8beefffae8e11a25e3545057b01c6b919bf00d3c..456eed6b562cdd254d82829888c8811a05110927 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] #original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline -ffast-math"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline -ffast-math"' sanity_check_paths = { 'files': ["bin/svm_learn", "bin/svm_learn", "bin/svm_classify"], diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb index c7ea06e097e47565302f01d421c6790dbe4ccef4..3b1c60d1100caa76ecadc789b999ff911d7379c3 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] #original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline -ffast-math"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline -ffast-math"' sanity_check_paths = { 'files': ["bin/svm_learn", "bin/svm_learn", "bin/svm_classify"], diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb index 565d1c34540fdb271349ca2ea1d14abb6458da6e..7676e956fa983db23184fc44aca426fa56e8bd92 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] #original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline"' sanity_check_paths = { 'files': ["bin/svm_learn", "bin/svm_learn", "bin/svm_classify"], diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb index 64604c4ed47e7f98355d4dbcca3915fed57d4838..7c112ec10504829091c1161da50ede5eb304d709 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' @@ -14,7 +16,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] #original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math -makeopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline"' +buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline"' sanity_check_paths = { 'files': ["bin/svm_learn", "bin/svm_learn", "bin/svm_classify"], diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9ebfd37f5f0c4e72e198ae7fb431c59dd0dbc2e6 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('Tcl', version), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb index a8d8d4acdf86b9efd07c38f8bcb5f818d1a440c3..5f035ccbf2e409069970056eb36f378429a5dffc 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb index b862540b18ba0ffa71bc6971a3430f16e77a9743..16d5293528005970b7893f32f79bbc74c1c5c9a8 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb index ffd89a9367e56b32dccfc8d3fe1b34fdae7d4c0f..1415c70f4e95cd68517a79d4aa8865a7c477ed77 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb index 63e7f3be76eb71c2d586a281c0fea41662b6a7f0..5c0a6ccd9227eed9699cc118fe1d7ec937b3bfea 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb index 93b3e36dcc30878c02dab67cb9048f7876cbd260..f65e1a0e09e8b6511a73d7e84b2ccff3cc75f20e 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..25372ffd8f646426a6f3120bb23e43be00ed3eab --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('Tcl', version), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb index 2c8c0ace461788fda11120150797caa96a4208f5..3231de70b9b919aa264192f68f87df455f5d20f8 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.15' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..063b42af9e5fb265d2765c09595a16c7d72da021 --- /dev/null +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman +# License:: GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'TopHat' +version = '2.0.10' + +homepage = 'http://ccb.jhu.edu/software/tophat/' +description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] + +patches = ['tophat_ictce.patch'] + +dependencies = [ + ('Boost', '1.55.0', '-Python-2.7.6'), + ('SAMtools', '0.1.19'), + ('zlib', '1.2.7'), +] + +configopts = '--with-boost=$EBROOTBOOST --with-bam=$EBROOTSAMTOOLS' + +sanity_check_paths = { + 'files': ['bin/tophat'], + 'dirs': [], +} + +parallel = 1 # not sure for a parallel build + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index 71673e119fc791eb087fc714b661c6d8a949f645..2ba3b07819c3ac2d6477bec8bf02934cfcca2d3d 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,17 +10,19 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.4' -homepage = 'http://tophat.cbcb.umd.edu/' +homepage = 'http://ccb.jhu.edu/software/tophat/' description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://tophat.cbcb.umd.edu/downloads/'] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] dependencies = [ ('Boost', '1.51.0', '-Python-2.7.3'), diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index d2f263db3b9684c5bb6dc78b59a101784bdae8d4..0136815261d9c05c76ad661330b9747aefb119a2 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,17 +10,19 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.4' -homepage = 'http://tophat.cbcb.umd.edu/' +homepage = 'http://ccb.jhu.edu/software/tophat/' description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://tophat.cbcb.umd.edu/downloads/'] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] dependencies = [ ('Boost', '1.51.0', '-Python-2.7.3'), diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index 3498b65411f70354290817a6cf03a3f9bb8b7f25..dff35b1d3f294222d327bfbf6f8e11d4484cb4d4 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' @@ -18,14 +20,14 @@ biodeps_ver = '1.6' biodeps_versuff = '-extended' versionsuffix = '-%s-%s%s' % (biodeps, biodeps_ver, biodeps_versuff) -homepage = 'http://tophat.cbcb.umd.edu/' +homepage = 'http://ccb.jhu.edu/software/tophat/' description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://tophat.cbcb.umd.edu/downloads/'] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] dependencies = [ (biodeps, biodeps_ver, biodeps_versuff), diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index c60fdf055277e3bc593b1e98b7e144fe57ec172b..76567e2542e7e4ef140e5681a00f7db4dac1b48f 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,17 +10,19 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' -homepage = 'http://tophat.cbcb.umd.edu/' +homepage = 'http://ccb.jhu.edu/software/tophat/' description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://tophat.cbcb.umd.edu/downloads/'] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] patches = ['tophat_ictce.patch'] diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index 22b9c76ac70510c2469676f6edfb4bf6890defb4..5890c30330194bec2e93449b9e82edd72be73e87 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' @@ -18,14 +20,14 @@ biodeps_ver = '1.6' biodeps_versuff = '-extended' versionsuffix = '-%s-%s%s' % (biodeps, biodeps_ver, biodeps_versuff) -homepage = 'http://tophat.cbcb.umd.edu/' +homepage = 'http://ccb.jhu.edu/software/tophat/' description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://tophat.cbcb.umd.edu/downloads/'] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] patches = ['tophat_ictce.patch'] diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index fb98d9fa54db6f4d95cdba4ad8164f725bca367d..60dbbd04a50670d9d84f04b10351d86f7253783a 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ # @@ -10,17 +10,19 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' -homepage = 'http://tophat.cbcb.umd.edu/' +homepage = 'http://ccb.jhu.edu/software/tophat/' description = """TopHat is a fast splice junction mapper for RNA-Seq reads.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://tophat.cbcb.umd.edu/downloads/'] +source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/'] patches = ['tophat_ictce.patch'] diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb index 3a0198704896b17d0f30d1184663326082740cbe..132fdbeeb9f91e30ee08e5c42204bbfcba561433 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb index f619dfb467e96075d55edf5f77ab0215b4d19154..c3d83422cba4168281462a2f0aa3245b91a67e0d 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb index 7147f39c0e4598447b2dc36b5e633f42ec909e28..6144d45261eb68d4c6916c37d0c8ed858c81e4ed 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb index 13e8e5b54129a1c87a9645fd72d7f726c0999a68..ae48804dd31275684916efdfdeb93d32863402f7 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'tclcl' version = '1.20' diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb index 543df7cda4708e8036246c6a63be9084d6175545..76b89b4e3d47e232136a7df4787ff8798c9ba5b1 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'tclcl' version = '1.20' diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb index 6a5992639e86b16489682b6ee631d7696d23beea..70183e7b6fbce3042e5a64645e7aae6b1df63e23 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'tclcl' version = '1.20' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb index 2234ca846bdc8219a5ffbcba30228fe42058eff4..66720a2d3718ab65a0ebbb0735456c85e89481b3 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb index a1598c39ab444283ef50bae5638bef38fe26865b..a41413570718f14b94df20551bc451ec348e348b 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..2e710f4a1d969e76e45bef13b0f8d873bc793d76 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## + +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb index ee941a1c83cc135cbb77195882df37001b198e37..e8fe446e8b55e9877d3db5b9295236aac6bfffbd 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb index d0dc781a4a52008e96b92a5028e39577d1271e3c..42dc94a346cd13aab3baae868d3a05eaec260fdd 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb index fe0717b9c9f146def779e7103a3c74e63191b48e..432a9ad37d900d4df9ec98470bf2d4049250c2c7 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..648d6836c116ade2e1ac7b403725153f21694dc9 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..747d0991881ce58ee922f2a84f26179e1a2209b7 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb index f06215e328a1f510ccb775b236754f601a9565f5..37494982ed454f6f8cb4755b4a1e5f578f4feb4d 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb b/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..233c5a0e62e907bbf8af2e875b8e3d0ea8dd2dfb --- /dev/null +++ b/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb @@ -0,0 +1,24 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +## + +easyblock = 'ConfigureMake' + +name = 'texinfo' +version = '5.2' + +homepage = 'https://www.gnu.org/software/texinfo/' +description = """Texinfo is the official documentation format of the GNU project.""" + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sanity_check_paths = { + 'files': ['bin/info', 'bin/makeinfo', 'bin/pod2texi', 'bin/texi2pdf'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb index c958dca9e7f892d781c5de4204f17d75fa6395ae..50fbec0e1c0343bf5c18546e675d4d62e77af209 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb index 2c720a82861f4ac93f86187141294c2a7cb933e8..46c29b08f1d18941351ab2f1233ca3b07c7108ea 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb index 2d57c2a7a965b485967b1a33b974af3585811790..d95d2e2e5ff1bb928df13f5bf3d288668efa9682 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb index 43bd2209ab77663473dae8049849b386f984ba9e..0b5eedcf683ea17643682f2c5e3d6d17ffe542c1 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb index de58c80ab679dfae65496ee90ceed987b2c81855..b3e41567be85e516e15e08e9d3b114f9c2b856cb 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb index 8da23e587b332b2f3c379029fb5bf574108d2731..ac829b62ae7e0c8a2f9704ef646a1ecb4e2f4572 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb index fac7aa6022bee3e217b4406c284a46447f948c1a..b0e1ae05f8417a54a83879a3b463e4cb8366ece6 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb index 58250c2913b86ea4a254e411acfc101b9f58aa9d..bfcc6592efaa60c36ae7eb850ae1439e64d61ba2 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb index 282691e2117add78a4b06fab761806702fe5a21d..5c2f9f5f7c656fdc5edbdff371c4dfeda1dda0f4 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb index 2181cfe1ccbab17019af38988ab3e2a629f2d948..80fbeb975f9b71233bf26150c7504d97215a57e0 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb index 5bcfe76a719a0b47fdab21c900af64c3a5b43eb4..f9d273f24a3c4abe473c32a8ef575b9ef49f6e45 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb index 6fa9dfbdc6581c9faa840ed865f75114486f612b..aa973159c71f0e28e037c21704c614ff2b90ed8e 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb index 4e19abd21c0b18a561c69a0ae382e3239089dafd..a3c15983570e392ef35ae30f35cfa60983df38ed 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..bfe2f53f72891ccad4016a663bdc2f75debaf2d2 --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.22.2' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['%s/v%s'%(homepage,'.'.join(version.split('.')[0:2]) )] +sources = [SOURCELOWER_TAR_GZ] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +configopts = '--disable-chfn-chsh --disable-login --disable-su ' +configopts += '--disable-wall --disable-use-tty-group ' +configopts += '--disable-makeinstall-chown --disable-makeinstall-setuid ' +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb index 696815202f6692329880de9620a4454969460f14..c583476f42fb58eeaff36dedf1e9621617fc64fb 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.24' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb index 77d061f0e012db1823699aef4003a7d7784b058a..ba35f12734a8637ed28e06e028e5db90bdbdba69 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.24.1' diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..26093f8c38437f86d4f4069bc399e253d292d4b4 --- /dev/null +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.12-goolf-1.4.10-Perl-5.16.3.eb @@ -0,0 +1,39 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'VCFtools' +version = '0.1.12' + +homepage = "http://vcftools.sourceforge.net/" +description = """The aim of VCFtools is to provide + methods for working with VCF files: validating, + merging, comparing and calculate some basic population + genetic statistics. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +perl = 'Perl' +perlver = '5.16.3' +versionsuffix = '-%s-%s' % (perl, perlver) +dependencies = [ + (perl, perlver), +] + +files_to_copy = ["bin", "lib", "examples", (["bin/man1"], 'man')] + +modextrapaths = {'PERL5LIB': 'lib/perl5/site_perl'} + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['vcftools', 'vcf-sort', 'vcf-stats']], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index 19076de433553fd004d0a69cdb331bc90c2f57c0..8f65a96e35afb72c4ae63ccf85719030e6b1a549 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb index 8fe49188c58f38561c25f15babb6d9721d525575..8849734f1b32787fdb160ba4e2450d10657080d6 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index cb0f7a0aa8073665ae82bcc805717b6514137e8b..286f9e74f0b147419d72dbca8d112534e4e654e8 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index d1417b85dbbec3597e271564b7e4d695e20dc3c0..3d9b76d1f124986cc5547ecf3a8fc9a2f7984f2f 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..fb24b1b64c1ab6a19d291438e3c86d9a8bf3ba37 --- /dev/null +++ b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,62 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## + +easyblock = 'CMakeMake' + +name = 'VTK' +version = '6.0.0' +altversions = ['5.4.2', '5.8.0', '5.10.1', '6.0.0'] + +homepage = 'http://www.vtk.org' +description = """The Visualization Toolkit (VTK) is an open-source, freely available software system for + 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several + interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization + algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques + such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +# Download eg. http://www.vtk.org/files/release/5.10/vtk-5.10.1.tar.gz +sources = [ + SOURCELOWER_TAR_GZ, + '%sdata-%s.tar.gz' % (name.lower(), version), +] +source_urls = ['http://www.vtk.org/files/release/%(version_major_minor)s'] + +builddependencies = [('CMake', '2.8.10.2')] + +python = 'Python' +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), + ('Mesa', '7.11.2', versionsuffix), +] + +configopts = "-DOPENGL_glu_LIBRARY=$EBROOTMESA/lib/libGLU.so -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so " +configopts += "-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DVTK_WRAP_PYTHON=ON " +configopts += "-DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython2.7.so -DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python2.7 " +preinstallopts = "mkdir -p %(installdir)s/lib/python2.7/site-packages/ && " +preinstallopts += "export PYTHONPATH=%(installdir)s/lib/python2.7/site-packages:$PYTHONPATH && " + +modextrapaths = {'PYTHONPATH': ['lib/python2.7/site-packages']} + +sanity_check_paths = { + 'files': ['bin/vtk%s-%%(version_major_minor)s' % x for x in ['EncodeString', 'HashSource', 'mkg3states', + 'ParseOGLExt', 'ProcessShader']], + 'dirs': ['lib/python2.7/site-packages/%(name)s-%(version_major_minor)s-py2.7.egg', + 'include/vtk-%(version_major_minor)s'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index 559cf010add6c715ccd2a04bf8018c65222c4b74..831d9459886c15fa08109087d28c60a471fb2908 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index 8e7a30e271ebf917c3aee1466eed5e6ff46bb0e1..4ef81eed3625f28143ecceb5a2d68bb66c3e1fa9 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index b602d60cb7f96237a57da1982b66bcd864452edd..07d51ab2d9a777782bcf78f857b66f8b0a312bb3 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index f96b95d49643e7c7d0607d2a1e7e5c33628d9b91..b01834e9d77a1cecc7b6590daf7b0610d9d68cda 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index aa00323081730f86ef0f0100de30c465ef2b8f12..9b14309ef161b368657e0fd8da74409cdecd529f 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index f08ac6a53cdf91dc8043ca7d7ab50f15763bdf8c..6b6c92bf80f68b8c203ec614ef2590d02923a801 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 38613ea9256967f544f534dff2bbcf03ed6d98f9..87fdb08561b8fee26164cee3f57b404de9b85ee5 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index 3abd656e69e794d48fb5f703b45f291c1ebf8fbd..577f4846d801ff4346aa18cb6d46041bf9ff539e 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb index 8f5bbc589708feab61be05108cb329470b213db1..3a3d16b550a0946e13adbc39197d3a714a6ff91b 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 LCSB, Ghent University -# Authors:: Fotis Georgatos , Ward Poelmans +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Ghent University +# Authors:: Fotis Georgatos , Ward Poelmans # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.9.0' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb index 2cbe926968fd8f36798baa13449dbf00a7375738..898d4cda785e6fa78b88a20b75df6b7b307008b0 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb index c7b957c4d8ff21a2bc0cdee0fd0583332e4e2092..8e5bf1c81ca95e37af888fdacf990d36913b7eed 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb index c41656cb60a0beb914d685319f587555f5428237..96163b744cff0d10e33009269e410e6da9b8b057 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb index 02c81b3e4aa56be3066de8379b7d97479ebf195b..7fff5ef5b5004d5d04176a8a874b6c38b77587ec 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb index d058f4f6fc03e64b45556ce02860a2c6bcc085a7..24b79e8841862e3c506a48c18468dbf4bb2a23f2 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Thekla Loizou , Andreas Panteli # License:: MIT/GPL # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb new file mode 100644 index 0000000000000000000000000000000000000000..9c3573c3bcf6275700ce280942843be11520ea49 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-kmer_31' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +# by default MAXKMERLENGTH=31 but defined here to keep all the easyconfigs homogeneous +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb new file mode 100644 index 0000000000000000000000000000000000000000..3556eea248ec9b27f0cdf1472db0b57533f54099 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb @@ -0,0 +1,25 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-kmer_57' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb new file mode 100644 index 0000000000000000000000000000000000000000..56dd2ed0943b4affc4142c2232e09d40986e51d6 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb @@ -0,0 +1,25 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-kmer_63' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 9b377be0754de12d1e8457ac7c7597343b97e7e9..3f61b9470551c79e90090e73adcfbd5695ebe141 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index d193e3e7e72da8af2156e42a48e631a824a26489..6f92dee8377002961466f6b8d2090e0fc3b360f0 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index 3eaaba34d2e960d81f9b6995419e2f8d161032c5..68de4eec04c70af41afa6b6b1330ae0a7a841b13 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index 50641b1a90f6d57b6d33c0e2040090b965f4a634..14f9815f66cd710b19acdaca677393acb583a671 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..281ecf7b59fe49b46c9b17e137c8d62728ac5b50 --- /dev/null +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -0,0 +1,47 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'ViennaRNA' +version = '2.1.6' + +homepage = 'http://www.tbi.univie.ac.at/~ronny/RNA/vrna2.html' +description = """The Vienna RNA Package consists of a C code library and several +stand-alone programs for the prediction and comparison of RNA secondary structures.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0' } +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tbi.univie.ac.at/~ronny/RNA/packages/source'] + +patches = ['ViennaRNA-2.1.6_ictce.patch'] + +# Prevents the "make install" step from trying to copy to _global_ perl dir and thus make easybuild fail. +configopts = '--without-perl' +# Alternatively, you may want to use the following to copy the perl-module to a "local" directory +# Code NOT yet tested, therefor left here for future recycling +#preconfigopts = 'PERLPREFIX="/path/where/the/perl/module/shoud/go"' + +sanity_check_paths = { + 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', + 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', + 'paln', 'duplex', 'alifold', 'plfold', 'up', + 'aliduplex', 'Lalifold', '2Dfold', 'parconv', + 'PKplex', 'plex', 'snoop', 'forester']] + + ['bin/Kinfold'], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6_ictce.patch b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6_ictce.patch new file mode 100644 index 0000000000000000000000000000000000000000..ff068d76beff8d98f789cae33e7f953e7d6d6125 --- /dev/null +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6_ictce.patch @@ -0,0 +1,26 @@ +--- ViennaRNA-2.1.6/Kinfold/cache.c.orig 2014-03-17 14:07:33.308562799 +0100 ++++ ViennaRNA-2.1.6/Kinfold/cache.c 2014-03-17 14:07:48.808965449 +0100 +@@ -56,7 +56,6 @@ + 61,59,53,47,43,41,37,31,29,23,17,13,11,7,3,1}; + + /* key must not be longer than 128 */ +-#pragma inline (cache_f) + unsigned cache_f(char *x) { + register char *s; + register int i; +@@ -80,6 +79,7 @@ + int cacheval; + cache_entry *c; + ++ #pragma inline (cache_f) + cacheval=cache_f(x); + if ((c=cachetab[cacheval])) + if (strcmp(c->structure,x)==0) return c; +@@ -92,6 +92,7 @@ + int cacheval; + cache_entry *c; + ++ #pragma inline (cache_f) + cacheval=cache_f(x->structure); + if ((c=cachetab[cacheval])) { + free(c->structure); diff --git a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb index 6d3e505fffa44c2cac93f3538cca30bfa27c183d..9ed98058b97d7cca29e22c5aaeccbedca22717e8 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Vim' version = '7.4' diff --git a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..e27e4f7760b5aa5599db564df161ef830966bcfe --- /dev/null +++ b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-goolf-1.4.10.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'WHAM' +version = '2.0.9' + +homepage = 'http://membrane.urmc.rochester.edu/content/wham' +description = """ fast, memory efficient implementation of the + Weighted Histogram Analysis Method (WHAM).""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://membrane.urmc.rochester.edu/sites/default/files/wham/'] +sources = ['%(namelower)s-release-%(version)s.tgz'] + +buildopts = ' CC="$CC"' + +parallel = 1 + +files_to_copy = [ + (["wham/wham", "wham-2d/wham-2d"], "bin"), + "doc" +] + +sanity_check_paths = { + 'files': ['bin/wham', 'bin/wham-2d'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..cb26524e7fd5b61cacec4f498829114669b32448 --- /dev/null +++ b/easybuild/easyconfigs/w/WHAM/WHAM-2.0.9-ictce-6.2.5.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'WHAM' +version = '2.0.9' + +homepage = 'http://membrane.urmc.rochester.edu/content/wham' +description = """ fast, memory efficient implementation of the + Weighted Histogram Analysis Method (WHAM).""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +source_urls = ['http://membrane.urmc.rochester.edu/sites/default/files/wham/'] +sources = ['%(namelower)s-release-%(version)s.tgz'] + +buildopts = ' CC="$CC"' + +parallel = 1 + +files_to_copy = [ + (["wham/wham", "wham-2d/wham-2d"], "bin"), + "doc" +] + +sanity_check_paths = { + 'files': ['bin/wham', 'bin/wham-2d'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index bf9ebc38cdc05ee261d317b3f12630ae83403afd..6dec18fa360396a8a1d00bb26847f378f09585d4 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb index cf9f032fe1af31038dcb1c3ffa6702fe1409d019..358a8dd26d9c9984aa5ab28e0325beaf95a9c61f 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb index 8431eafd57319c5e56fdf9db3bd22877efd02f8b..c6888e98ca29e39d20af69f1a016f582be7b3565 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb index 9a70c0a0befc3d3cc9a77a7245dfd887b1c569d6..0e47915802dc8215d56da248da584541f97e6e3d 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 9e0cde67a1e267e66e143679fac634f3e7a5d88d..c92992f5a7f3ee557418908867364c01d5058be0 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb index 38cbdd299d51e6985873f65efbc02ccf73b7933e..295ae8c118fe130309fbe411a1b07548618ecc62 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb index ceaf72669895e5b4a1e6cb8af78979cf9329fc69..be3566f62b09f41f237c99b4cfd5c94b3973cf3e 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb index ef8b3b3cc61a829ad04799399745d233006eadb1..b40541f0a2dc1b04acc59f93d37da7dda9b8f658 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb @@ -11,7 +11,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb index a520db34948788a4b976ad3decc5e814e05fbdcb..8e3d2604d54ca0803ad63734b67314dccf37942d 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb index a11ffd3dd52d72cacdefbec6cb45f374823a8ebc..7d70493e14d3adbbb850bf2b9cf1f60f207d4a13 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb index 381936769781bd6890ea1e39c34504b8703250e8..aed3bf66ade03b5725bc081c6297161556f8f2d7 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb index daef6c10e62ef55ec88f9e8082ac208c79c5902b..67bdbc336633f05dc4bb6cc4e1319493888fea67 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb index 7981e0271c6fb67f9e067720dd3dc921499f8428..2be0977a7fe16a6056d6b7ca7ff45bb82228547b 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb index f332d97a3edd7eb771c01ba24365250276fc82e5..40eaf8e5e67788a11d5551dbe45484d769aad2c8 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index cbe84599625205909adaa974b560246a37dd7fa2..4108dab25a65ed4a0357a94a34a9730262826f3b 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb index ed91ae69455e680b8067f413178f10085d5f4a5a..ac201744e62cd1531c13e2a854b7ba060fac9624 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb index c3795e834f11f59845eb8c9aa558e39ec9bf727d..eeb8fd0f170fe5f3fdde36d20a63a523395d0481 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb index 7c8dcaae6f15c6b0bd886e15b29816baa8a26bbb..6243841c8d829dfc2512d65d5d99ecb0c68722c3 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 1173c7f6171ed96edd06be92fb1582accc74095e..f1d896a412fec00eebfb1fe9bcf44db7ebeca545 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] netcdf_version = '4.2' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb index f105c2bc7fab3789654bd397a07e20a80fbca42f..90972b76b071681ea305596e7e0d314d7039e4ff 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb index 12ed056cc6154b3c9c11d4ee3e8844969c6697f0..b2316db8a44b7ebe65b072d5685522ff92f7fb9b 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb index 84094255a4bfefc0bd0926abde26d8868ed5d36c..3d5729d79111a5aead1421b1c243f1f03ae5c802 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb index 227be5752c0e368c71b1e99894692569017cfc9f..6c03d82854f90ab768e029b9211eb7bf543da66e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb index 458c18466a149d43a36662b47b6162c045162ead..5a2accb533705bb2740def930a96be3d3c43c676 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb index 50f973fe2a4a6d466054d4dee968e15da3c65278..1839047837cfb7f588d37b8bc4f2757b50070862 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb index e7fbb9722a419fec2e94ca2f73f6a6951bbfd8a6..ddf90400b42a4a88319b99332afefa95e7992818 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb index 7dbefef99fc9066f886f382d41a5db14c14b91fa..f8d471504c95952e443df6b9806c69ad422e8eea 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb index 1449f6bc08c50bbf2bfd3f9ef508752b1c958d5c..3a08ca8ce706ff44f2725d0d04794220a758d5b3 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb new file mode 100644 index 0000000000000000000000000000000000000000..aca6ed1e40ae9d55bcaa36cee80ce354ea1871e8 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb @@ -0,0 +1,39 @@ +name = 'WRF' +version = '3.5.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('netCDF', '4.2.1.1'), + ('netCDF-Fortran', '4.2'), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.5_netCDF-Fortran_separate_path.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb index 52493be663ea446e8a55c37cc73689ca4417b3be..9f5c44886e00aed944dbb5e0f1cb0f114222b9e9 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb index f02edb456770f58ec08518a25e760f9b77d79d40..f408dd6f1e5fe564ae003cee6abe6384cc75ae9c 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb new file mode 100644 index 0000000000000000000000000000000000000000..e55129bc1c50d2c10df85a076a79799f4bb9b1a7 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb @@ -0,0 +1,40 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('netCDF', '4.3.2'), + ('netCDF-Fortran', '4.4.0'), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_netCDF-Fortran_separate_path.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb new file mode 100644 index 0000000000000000000000000000000000000000..c387f2540702e5c2469207bafc3d659c41e8daf0 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb @@ -0,0 +1,40 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('netCDF', '4.3.2'), + ('netCDF-Fortran', '4.4.0'), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_netCDF-Fortran_separate_path.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch new file mode 100644 index 0000000000000000000000000000000000000000..f99748c0f8ed6138648f8857dbf3839845b0b143 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch @@ -0,0 +1,43 @@ +# see http://www2.mmm.ucar.edu/wrf/users/wrfv3.6/known-prob-3.6.1.html +--- WRFV3.orig/dyn_em/module_initialize_real.F 2014-08-13 04:03:11.000000000 +0200 ++++ WRFV3/dyn_em/module_initialize_real.F 2014-10-08 18:40:04.000000000 +0200 +@@ -4666,13 +4666,13 @@ + CALL lagrange_setup ( var_type , interp_type , & + ordered_porig(kinterp_start:kinterp_end) , & + ordered_forig(kinterp_start:kinterp_end) , & +- count , lagrange_order , extrap_type , & ++ kinterp_end-kinterp_start+1 , lagrange_order , extrap_type , & + ordered_pnew(kstart:kend) , ordered_fnew , kend-kstart+1 ,i,j) + ELSE + CALL lagrange_setup ( var_type , interp_type , & + LOG(ordered_porig(kinterp_start:kinterp_end)) , & + ordered_forig(kinterp_start:kinterp_end) , & +- count , lagrange_order , extrap_type , & ++ kinterp_end-kinterp_start+1 , lagrange_order , extrap_type , & + LOG(ordered_pnew(kstart:kend)) , ordered_fnew , kend-kstart+1 ,i,j) + END IF + +--- WRFV3.orig/dyn_em/module_em.F 2014-01-10 22:04:29.000000000 +0100 ++++ WRFV3/dyn_em/module_em.F 2014-10-08 22:17:10.000000000 +0200 +@@ -2109,8 +2109,8 @@ + REAL , DIMENSION( ims:ime , jms:jme ) , & + INTENT(IN ) ::xlong, xlat + +- real, dimension(kms:kme), intent(inout) :: traj_i,traj_j,traj_k +- real, dimension(kms:kme), intent(inout) :: traj_long,traj_lat ++ real, dimension(1:config_flags%num_traj), intent(inout) :: traj_i,traj_j,traj_k ++ real, dimension(1:config_flags%num_traj), intent(inout) :: traj_long,traj_lat + real, dimension(ims:ime,kms:kme,jms:jme),intent(in) :: rdzw + real, dimension(ims:ime,kms:kme,jms:jme)::u,v,w + real, dimension(ims:ime,jms:jme),intent(in)::msft,msfu,msfv +--- WRFV3.orig/frame/module_io_quilt.F 2014-08-08 22:53:35.000000000 +0200 ++++ WRFV3/frame/module_io_quilt.F 2014-10-08 20:21:28.000000000 +0200 +@@ -2620,7 +2620,7 @@ + CALL wrf_get_dm_communicator( mpi_comm_here ) + + CALL MPI_Comm_rank ( mpi_comm_here, mytask, ierr ) ; +- CALL mpi_x_comm_size ( mpi_comm_here, ntasks, ierr ) ; ++ CALL mpi_x_comm_size( mpi_comm_here, ntasks, ierr ) ; + + IF ( mytask .EQ. 0 ) THEN + OPEN ( unit=27, file="namelist.input", form="formatted", status="old" ) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch new file mode 100644 index 0000000000000000000000000000000000000000..6c4aba8c3683f543183606389369f3574eb2f468 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch @@ -0,0 +1,198 @@ +# WRF-3.5_netCDF-Fortran_separate_path.patch updated in order to work with netCDF libraries placed either to lib or lib64 directories +#B. Hajgato Dec 4th 2014 +--- WRFV3.orig/arch/Config_new.pl 2013-08-16 23:54:59.000000000 +0200 ++++ WRFV3/arch/Config_new.pl 2014-12-03 14:10:04.404289987 +0100 +@@ -8,6 +8,7 @@ + select((select(STDOUT), $|=1)[0]); + $sw_perl_path = perl ; + $sw_netcdf_path = "" ; ++$sw_netcdff_path = "" ; # for netCDF 4.2 and greater, Fortran lib may be in a different path + $sw_pnetcdf_path = "" ; + $sw_phdf5_path=""; + $sw_jasperlib_path=""; +@@ -83,6 +84,10 @@ + } + } + } ++ if ( substr( $ARGV[0], 1, 8 ) eq "netcdff=" ) ++ { ++ $sw_netcdff_path = substr( $ARGV[0], 9 ) ; ++ } + if ( substr( $ARGV[0], 1, 8 ) eq "pnetcdf=" ) + { + $sw_pnetcdf_path = substr( $ARGV[0], 9 ) ; +@@ -106,6 +111,7 @@ + if ( substr( $ARGV[0], 1, 11 ) eq "USENETCDFF=" ) + { + $sw_usenetcdff = substr( $ARGV[0], 12 ) ; ++ $sw_usenetcdff =~ s/!/ /g ; + } + if ( substr( $ARGV[0], 1, 5 ) eq "time=" ) + { +@@ -362,6 +368,7 @@ + { + $_ =~ s/CONFIGURE_PERL_PATH/$sw_perl_path/g ; + $_ =~ s/CONFIGURE_NETCDF_PATH/$sw_netcdf_path/g ; ++ $_ =~ s/CONFIGURE_NETCDFF_PATH/$sw_netcdff_path/g ; + $_ =~ s/CONFIGURE_PNETCDF_PATH/$sw_pnetcdf_path/g ; + $_ =~ s/CONFIGURE_PHDF5_PATH/$sw_phdf5_path/g ; + $_ =~ s/CONFIGURE_LDFLAGS/$sw_ldflags/g ; +--- WRFV3.orig/arch/configure_new.defaults 2014-07-13 01:32:03.000000000 +0200 ++++ WRFV3/arch/configure_new.defaults 2014-12-03 14:10:04.410289987 +0100 +@@ -1516,6 +1516,7 @@ + + LIB_EXTERNAL = \ + ../external/io_netcdf/libwrfio_nf.a CONFIGURE_NETCDF_PATH/lib/libnetcdf.lib \ ++ CONFIGURE_NETCDFF_PATH/lib/libnetcdff.lib \ + ../external/wavelet/libWavelet.a ../external/wavelet/lib_wavelet.a + ESMF_IO_LIB = ../external/esmf_time_f90/libesmf_time.a + LIB_BUNDLED = \ +--- WRFV3.orig/arch/conf_tokens 2008-02-26 16:39:38.000000000 +0100 ++++ WRFV3/arch/conf_tokens 2014-12-03 14:10:04.421289987 +0100 +@@ -5,6 +5,7 @@ + CONFIGURE_DMPARALLEL + CONFIGURE_RWORDSIZE + CONFIGURE_NETCDF_FLAG ++CONFIGURE_NETCDF_FLAG + CONFIGURE_GRIB2_FLAG + CONFIGURE_NETCDF_LIB_PATH + CONFIGURE_GRIB2_LIB +@@ -13,4 +14,5 @@ + CONFIGURE_WRFIO_NF + CONFIGURE_WRFIO_GRIB2 + CONFIGURE_NETCDF_PATH ++CONFIGURE_NETCDFF_PATH + CONFIGURE_GRIB2_INC +--- WRFV3.orig/arch/postamble_new 2014-07-13 01:39:10.000000000 +0200 ++++ WRFV3/arch/postamble_new 2014-12-03 14:10:04.431289987 +0100 +@@ -42,6 +42,7 @@ + -I$(WRF_SRC_ROOT_DIR)/phys \ + -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \ + -I$(NETCDFPATH)/include \ ++ -I$(NETCDFFPATH)/include \ + CONFIGURE_RTTOV_INC + REGISTRY = Registry + CC_TOOLS_CFLAGS = CONFIGURE_NMM_CORE +@@ -64,6 +65,7 @@ + ENVCOMPDEFS = CONFIGURE_COMPILEFLAGS + CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG) CONFIGURE_COMMS_INCLUDE + NETCDFPATH = CONFIGURE_NETCDF_PATH ++NETCDFFPATH = CONFIGURE_NETCDFF_PATH + PNETCDFPATH = CONFIGURE_PNETCDF_PATH + + bundled: io_only CONFIGURE_ATMOCN +@@ -92,7 +94,7 @@ + + wrfio_nf : + ( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \ +- make $(J) NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \ ++ make $(J) NETCDFPATH="$(NETCDFPATH)" NETCDFFPATH="$(NETCDFFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \ + CC="$(SCC)" CFLAGS="$(CFLAGS)" \ + FC="$(SFC) $(PROMOTION) $(OMP) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ) + +--- WRFV3.orig/Makefile 2014-08-08 21:37:17.000000000 +0200 ++++ WRFV3/Makefile 2014-12-03 14:10:04.457289987 +0100 +@@ -597,7 +597,7 @@ + @ echo '--------------------------------------' + ( cd frame ; $(MAKE) $(J) framework; \ + cd ../external/io_netcdf ; \ +- $(MAKE) NETCDFPATH="$(NETCDFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ ++ $(MAKE) NETCDFPATH="$(NETCDFPATH)" NETCDFFPATH="$(NETCDFFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ + CPP="$(CPP)" LDFLAGS="$(LDFLAGS)" TRADFLAG="$(TRADFLAG)" ESMF_IO_LIB_EXT="$(ESMF_IO_LIB_EXT)" \ + LIB_LOCAL="$(LIB_LOCAL)" \ + ESMF_MOD_DEPENDENCE="$(ESMF_MOD_DEPENDENCE)" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \ +--- WRFV3.orig/configure 2014-05-03 21:27:47.000000000 +0200 ++++ WRFV3/configure 2014-12-03 14:34:03.567289861 +0100 +@@ -277,10 +277,18 @@ + USENETCDFF="" # see below + if [ -n "$NETCDF" ] ; then + echo "Will use NETCDF in dir: $NETCDF" ++ # for netCDF 4.2 and greater, the Fortran library is a separate install ++ if [ -z "$NETCDFF" ]; then ++ NETCDFF="$NETCDFF" ++ fi + # for 3.6.2 and greater there might be a second library, libnetcdff.a . Check for this and use + # if available + if [ -f "$NETCDF/lib/libnetcdff.a" -o -f "$NETCDF/lib/libnetcdff.so" ] ; then + USENETCDFF="-lnetcdff" ++ else ++ if [ -f "$NETCDFF/lib/libnetcdff.a" -o -f "$NETCDFF/lib/libnetcdff.so" -o -f "$NETCDFF/lib64/libnetcdff.so" -o -f "$NETCDFF/lib64/libnetcdff.so" ] ; then ++ USENETCDFF="-L$NETCDFF/lib!-L$NETCDFF/lib64!-lnetcdff" # ! will be replaced with space ++ fi + fi + else + echo "Will configure for use without NetCDF" +@@ -553,7 +561,7 @@ + srch=`grep -i "^#ARCH.*$os" arch/configure_new.defaults | grep -i "$mach"` + if [ -n "$srch" ] ; then + $PERL arch/Config_new.pl -dmparallel=$COMMLIB -ompparallel=$OMP -perl=$PERL \ +- -netcdf=$NETCDF -pnetcdf=$PNETCDF -phdf5=$PHDF5 -os=$os -mach=$mach -ldflags=$ldflags \ ++ -netcdf=$NETCDF -netcdff=$NETCDFF -pnetcdf=$PNETCDF -phdf5=$PHDF5 -os=$os -mach=$mach -ldflags=$ldflags \ + -compileflags=$compileflags -opt_level=$opt_level -USENETCDFF=$USENETCDFF -time=$FORTRAN_COMPILER_TIMER \ + -wrf_core=$wrf_core -gpfs=$GPFS_PATH -curl=$CURL_PATH -dep_lib_path="$DEP_LIB_PATH" + if test ! -f configure.wrf ; then +@@ -652,10 +660,10 @@ + echo "If you wish to change the default options, edit the file:" + echo " arch/configure_new.defaults" + +-if test -n "$NETCDF" ; then +- if [ ! -f $NETCDF/include/netcdf.inc ] ; then ++if test -n "$NETCDFF" ; then ++ if [ ! -f $NETCDFF/include/netcdf.inc ] ; then + echo +- echo "Error : Not found $NETCDF/include/netcdf.inc" ++ echo "Error : Not found $NETCDFF/include/netcdf.inc" + echo " Please check this installation of NetCDF and re-run this configure script" + echo + if test -n "$NETCDF4" ; then +@@ -664,7 +672,7 @@ + fi + exit -1 + fi +- grep nf_format_64bit $NETCDF/include/netcdf.inc > /dev/null ++ grep nf_format_64bit $NETCDFF/include/netcdf.inc > /dev/null + configure_aaaa=$? ; export configure_aaaa + if [ $configure_aaaa -a -z "$WRFIO_NCD_LARGE_FILE_SUPPORT" ] ; then + echo "NetCDF users note:" +--- WRFV3.orig/external/io_netcdf/makefile 2014-07-13 01:39:10.000000000 +0200 ++++ WRFV3/external/io_netcdf/makefile 2014-12-03 14:39:31.007289832 +0100 +@@ -3,9 +3,9 @@ + OBJSL = wrf_io.o field_routines.o module_wrfsi_static.o + OBJS = $(OBJSL) + CODE = ext_ncd_get_dom_ti.code ext_ncd_get_var_td.code ext_ncd_get_var_ti.code ext_ncd_put_dom_ti.code ext_ncd_put_var_td.code ext_ncd_put_var_ti.code transpose.code +-FFLAGS = $(FCFLAGS) -I$(NETCDFPATH)/include -I../ioapi_share +-LIBS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -lnetcdf +-LIBFFS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -lnetcdff -lnetcdf $(NETCDF4_DEP_LIB) ++FFLAGS = $(FCFLAGS) -I$(NETCDFFPATH)/include -I../ioapi_share ++LIBS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -L$(NETCDFPATH)/lib64 -lnetcdf ++LIBFFS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -L$(NETCDFPATH)/lib64 -L$(NETCDFFPATH)/lib -L$(NETCDFFPATH)/lib64 -lnetcdff -lnetcdf $(NETCDF4_DEP_LIB) + CPP1 = $(CPP) -P $(TRADFLAG) + M4 = m4 -Uinclude -Uindex -Ulen + AR = ar +@@ -24,7 +24,7 @@ + $(RANLIB) $@ + + wrf_io.o: wrf_io.F90 $(CODE) +- grep nf_format_64bit $(NETCDFPATH)/include/netcdf.inc ;\ ++ grep nf_format_64bit $(NETCDFFPATH)/include/netcdf.inc ;\ + a=$$? ; export a ; \ + if [ $$a -a "$$WRFIO_NCD_LARGE_FILE_SUPPORT" = "1" ] ; then \ + $(CPP1) -DWRFIO_NCD_LARGE_FILE_SUPPORT -I../ioapi_share wrf_io.F90 | $(M4) - > wrf_io.f ; \ +@@ -43,14 +43,14 @@ + x=`echo "$(FC)" | awk '{print $$1}'` ; export x ; \ + if [ $$x = "gfortran" ] ; then \ + echo removing external declaration of iargc for gfortran ; \ +- $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\ ++ $(CPP1) -I$(NETCDFFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\ + else \ +- $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \ ++ $(CPP1) -I$(NETCDFFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \ + fi + $(FC) -c $(FFLAGS) diffwrf.f + @if [ \( -f ../../frame/wrf_debug.o \) -a \( -f ../../frame/module_wrf_error.o \) -a \( -f $(ESMF_MOD_DEPENDENCE) \) -a \( -f ../../frame/clog.o \) ] ; then \ + echo "diffwrf io_netcdf is being built now. " ; \ +- if [ \( -f $(NETCDFPATH)/lib/libnetcdff.a -o -f $(NETCDFPATH)/lib/libnetcdff.so \) ] ; then \ ++ if [ \( -f $(NETCDFFPATH)/lib/libnetcdff.a -o -f $(NETCDFFPATH)/lib/libnetcdff.so -o -f $(NETCDFFPATH)/lib64/libnetcdff.a -o -f $(NETCDFFPATH)/lib64/libnetcdff.so \) ] ; then \ + $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) ../../frame/wrf_debug.o ../../frame/module_wrf_error.o ../../frame/clog.o $(ESMF_IO_LIB_EXT) $(LIBFFS) ;\ + else \ + $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) ../../frame/wrf_debug.o ../../frame/module_wrf_error.o ../../frame/clog.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index b25ab437cd8c199d53732f3ddde95dc356805d6c..12cf06119f38e643a72c8be982b8d0ab0b66e529 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index de4c012ec4d7c2e2723e1a0980bf30eb9c36a105..e59097b639d201a327e3894e8087030163f22161 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index 3e35384c19108f53a641e5c894b71a25ee43f6a4..37b9d91c99588a309542d2d6f42f0288fc1a8935 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..744de7be27d965a88fd2d55a24af44ceb01335d9 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'XML-Dumper' +version = '0.81' + +homepage = 'http://search.cpan.org/~mikewong/XML-Dumper-0.81/' +description = """XML::Dumper dumps Perl data to a structured XML format. +XML::Dumper can also read XML data that was previously dumped +by the module and convert it back to Perl.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +source_urls = ['http://cpan.metacpan.org/authors/id/M/MI/MIKEWONG/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('XML-Parser', '2.41', versionsuffix) +] + +options = {'modulename': 'XML::Dumper'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-goolf-1.4.10-Perl-5.16.3.eb index fda80b8e04e97ac9d5e60bfcaf3400cacb256fba..d33c00bf8596b9b520ffa0fc3c87c240d1842835 100644 --- a/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-goolf-1.4.10-Perl-5.16.3.eb @@ -8,7 +8,7 @@ description = """Perl binding for libxml2""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://www.cpan.org/modules/by-module/XML/SHLOMIF/'] +source_urls = ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-ictce-4.1.13-Perl-5.16.3.eb index 47da2272fcbdeb6d54a7214b423c57b87885c043..83cf74cbf7e70ddaedc9484da7b7d0b9881b5585 100644 --- a/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/x/XML-LibXML/XML-LibXML-2.0018-ictce-4.1.13-Perl-5.16.3.eb @@ -8,7 +8,7 @@ description = """Perl binding for libxml2""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = ['http://www.cpan.org/modules/by-module/XML/SHLOMIF/'] +source_urls = ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..95ee785c732d9f0d1225cc60a7b4c83a65ab0888 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,24 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.41' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('expat', '2.1.0') +] + +options = {'modulename': 'XML::Parser'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-goolf-1.4.10-Perl-5.16.3.eb index af7e80ff086c3e8431af27719c051639bee81071..3bb564f39acce5bfe218874e7f1b12d4c5ebb829 100644 --- a/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-goolf-1.4.10-Perl-5.16.3.eb @@ -8,7 +8,7 @@ description = """Easily read/write XML in Perl""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://www.cpan.org/modules/by-module/XML/GRANTM/'] +source_urls = ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-ictce-4.1.13-Perl-5.16.3.eb index 3ef8ceb0fed302889431badcd15d08435032700f..a145af13b1fe14c5d46ce4c1596c9472f31624d4 100644 --- a/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/x/XML-Simple/XML-Simple-2.20-ictce-4.1.13-Perl-5.16.3.eb @@ -8,7 +8,7 @@ description = """Easily read/write XML in Perl""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = ['http://www.cpan.org/modules/by-module/XML/GRANTM/'] +source_urls = ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..41318259ee64b9665b765d61ed32ff6c802f1a43 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,24 @@ +easyblock = 'PerlModule' + +name = 'XML-Twig' +version = '3.48' + +homepage = 'http://search.cpan.org/~mirod/XML-Twig-3.48/' +description = """XML::Twig is (yet another!) XML transformation module.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +source_urls = ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('XML-Parser', '2.41', versionsuffix) +] + +options = {'modulename': 'XML::Twig'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa79e514746830b44cd355279f2736a5d9ba9eae --- /dev/null +++ b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'XQilla' +version = '2.3.0' + +homepage = 'http://xqilla.sourceforge.net/HomePage' +description = """XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C∞ library.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [ + 'http://downloads.sourceforge.net/project/xqilla/xqilla/%s' % version, +] + +configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' + +dependencies = [ + ('Xerces-C++', '3.1.1'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b169cb58403cd41d80c00233610837d82d7c7ed8 --- /dev/null +++ b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'XQilla' +version = '2.3.0' + +homepage = 'http://xqilla.sourceforge.net/HomePage' +description = """XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C∞ library.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [ + 'http://downloads.sourceforge.net/project/xqilla/xqilla/%s' % version, +] + +configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' + +dependencies = [ + ('Xerces-C++', '3.1.1'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..fad6a95d952964d69defda099f851efd254579cb --- /dev/null +++ b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'XZ' +version = '5.0.5' + +homepage = 'http://tukaani.org/xz/' +description = "xz: XZ utilities" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://tukaani.org/xz/'] + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +# configopts = ' --disable-assembler ' # may become useful in non-x86 archs + +sanity_check_paths = { + 'files': ["bin/xz", "bin/lzmainfo"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb index 2393846fce8bf33376b9efd377e0630b6000af90..171e02c46b23a78b4e822c229801b1fe0f4db022 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'XZ' version = '5.0.5' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb index 9c4849b2f4fe76da8e0e01c270a51af6ca94fb3b..c7b17522590816f7c467197afeabf43f1925467e 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'XZ' version = '5.0.5' diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..443076c83ed640bb56f14bee0f49794a36050677 --- /dev/null +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'Xerces-C++' +version = '3.1.1' + +homepage = 'http://xerces.apache.org/xerces-c/' +description = """Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = ['xerces-c-%(version)s.tar.gz'] +source_urls = [ + 'http://apache.belnet.be/xerces/c/3/sources/' +] + +dependencies = [ + ('cURL', '7.40.0'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9437987e641e6885840af55f5107d716accec476 --- /dev/null +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'Xerces-C++' +version = '3.1.1' + +homepage = 'http://xerces.apache.org/xerces-c/' +description = """Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['xerces-c-%(version)s.tar.gz'] +source_urls = [ + 'http://apache.belnet.be/xerces/c/3/sources/' +] + +dependencies = [ + ('cURL', '7.40.0'), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb index efca87d195ae07a9e3f874bd70ba5d8d52d555ae..f4bfeba75e91c2231bd0df4fe33632e1f586505c 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb index ae60178976b8a37f1996a90c69d7f7790fdbd717..73f42d47356da6d241c436eb540a9ee8508e8087 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb index b3d975a74437f55653c9bce63e6654a3614bb68c..524c55782bd35a1230e9c7ca42cf680d8d7a462c 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e352b3479dcbb5f014e695005297ea880686c9a3 --- /dev/null +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'xbitmaps' +version = '1.1.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """provides bitmaps for x""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] + +sanity_check_paths = { + 'files' : ['include/X11/bitmaps/gray'], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..ffd671773501cb9c70f46b9547ea0defdbc8b647 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2014b'} + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..1f1ee49c72485f77f468df66dafabf8bd7827eba --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 7967056f54083459cb7ed3b21bded5ca7ba7f46b..01ca8890f378e03123ae8f4370f676270464a575 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb index 2abcefbb79b4af608b16275e8d379de994733edd..49ac560a5ba0ed2ccba478d5d94546ec464e2771 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb index c549243fc9407dbbfc747d6d80eb325317a087b9..fb6b5dd346151ac734d310741a5e578b579e2890 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb index d24f9eabc04abec853b9192ce48ba259c981fcca..673f729a0bb021255679d9fee9fbbcb430e07e9f 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb index 8b559cf4c99a07730f8525d7009cab81295b84e7..153a7de4965e83196cf7bb125858d317aad8285f 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..e1af44f5690a4d164cb4534e4c60cb298d4462be --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.7' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2014b'} + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb index 199f76e62c1dfdbb16d365c005042a92319f6f2f..3418593f36329ab1c39b2a4298996f2c36b99242 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb index 69a66967661334e408b4b0b1ed6490968c8f42f2..447dc3ac65a3ba955cf2adf65b30e44353b2bf4e 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb index b6a0c1599352c8e28dc1de7dd643ca14c595ca89..6256b4a10c6d7ec4790caa8727d1414b33840f0c 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d79aece7ee693d9cd8099335a6693ccc9c6f8b6d --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..bfc2d59685160d91edb8da79a8162a64829dcfc2 --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.3.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..4ef466e9c69527e75c7429e420c2fbd7b5355eb4 --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.3.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f631bc5ac1ea1bac09fa0938b34f5e55d39144c5 --- /dev/null +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'xineramaproto' +version = '1.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers for xinerama" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/panoramiXproto.h'], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0875abaf8fa725d1084a3484ad4b291fff1da3e5 --- /dev/null +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'xineramaproto' +version = '1.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers for xinerama" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/panoramiXproto.h'], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb old mode 100755 new mode 100644 index 13ac43c2825abc79c775e0fc9eeb35160c57d490..1d1be7fff0a600336e8f545ab1ee143669aa41f8 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb index 14ecec020ebd415367517fdd60e473f40284b8c9..bc0f37c42cb591d929fb31ed96d71deeeb949802 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb index 2f86fc78e04651e4df95f6a147d1c80e7a3b3727..a4bc0fb08d5f50eef6b259483fd34808d4983892 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb index 50f4a1d8d064ae3408eb1f41893bb62344ec1930..a26b58ae0dd0346a4df12e0a819a07b994751837 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb new file mode 100644 index 0000000000000000000000000000000000000000..33c13941817517efe2f9826221fecbecdc609551 --- /dev/null +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'xorg-macros' +version = '1.17' + +homepage = 'http://cgit.freedesktop.org/xorg/util/macros' +description = """X.org macros utilities.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = ['http://cgit.freedesktop.org/xorg/util/macros/snapshot'] # no slash ('/') at the end! +sources = ['util-macros-%(version)s.tar.gz'] + +dependencies = [('Autoconf', '2.69')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['share/pkgconfig/xorg-macros.pc'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb index f78b600788891e85242e9a60cae9c2a60b041683..d1253573cc61c23c55b7832a3d09f138d389f191 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..a793ad1706cdd79360beef511807e0d7d36e675e --- /dev/null +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'xorg-macros' +version = '1.17' + +homepage = 'http://cgit.freedesktop.org/xorg/util/macros' +description = """X.org macros utilities.""" +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://cgit.freedesktop.org/xorg/util/macros/snapshot'] # no slash ('/') at the end! +sources = ['util-macros-%(version)s.tar.gz'] + +dependencies = [('Autoconf', '2.69')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['share/pkgconfig/xorg-macros.pc'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb index ff6d5bf357821bf3f741997c10bd6ae859196fa2..bb6336c3400b219b59f2bd589a1d0d4f9f1ef854 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb index 03defde64fcfda1b821226fe49f6226aa06362aa..6e21bf0fdc2db8f4b6adf8e7bcee21fb6d9c9c61 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb index 723e7c3a060d77bacbf610ecb5ace88cd7e2ce02..d005dadc8e4d5e9364e1ee63cf0883d2c846bd4d 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb index 5a3a786cfeffce39d96ad0b3a451e1c730422a37..5f36cfb20c09c032c1e3b61a7a66c3c59b6f5087 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb index f8e513f302a38d455cb7fa2011cc5654b34757e9..096a07bd53fb6588b1929ccd1224438590ae9af6 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..14e0666049a4219a89023782dcf52fc36ae3f48e --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xproto' +version = '7.0.26' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f620518acaaab369b02b3b9c27ad13cda77cb88c --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xproto' +version = '7.0.26' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb index bfc50f46f5cca137c8c3c0c94655206c9e7c354b..6676a3761dc18eb9f69fdfba24582193d35f91da 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb index b8c63106bfe31c989b361d3a34d547f93aa4eed4..ae5d033d58a65d14b3cd29e77591d0aa3ced1ce6 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb index e8f54023d97e17b6b9f8f54079c0d565d394d4c2..c4c078f4c4bf1ee7face19fe4a68e79289c8c748 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..825d041de58eb257090c504fae2028eb84336051 --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'xtrans' +version = '1.2.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d17e97131363b4ff81d852e791710940c254acbc --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'xtrans' +version = '1.3.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb index 77b78aefc72d12c72490a01d872cd2aa13ce60fc..587b16d7480c74bff269bc194e492420ff9f26ab 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb index ded10ac40ce6b549c87f48b94c2c6fa23cac5d1a..a394ff11d014da77b7f3e03011443108a8d18036 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb index 30d441b40aaa35fb8773339d8f0a4f09bd5612a7..94ef6fae9e71e4d6c5e3f2db0d45f383f1c0611a 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..21337d5364564f4b21bd10721d7aea3033ff9ef3 --- /dev/null +++ b/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'YAXT' +version = '0.2.1' + +homepage = 'https://www.dkrz.de/redmine/projects/yaxt' +description = "Yet Another eXchange Tool" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'usempi': True} + +source_urls = ['https://www.dkrz.de/redmine/attachments/download/436/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["include/yaxt.h", "include/yaxt.mod", "lib/libyaxt.a", "lib/libyaxt.so"], + 'dirs': ["include/xt"], +} + +configopts = 'FC="$F90" FCFLAGS="$F90FLAGS -cpp"' + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb index a9aa82fdac839a2e7c985896206b75b36968a8f6..06b72b0e9c2a1164aa646a5a2c026fb4559a0b35 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' @@ -25,7 +27,7 @@ builddependencies = [('libtool', '2.4.2')] configopts = '--with-svm-learn=$EBROOTTINYSVM' # YamCHA ships a very old libtool by itself -makeopts = 'LIBTOOL=libtool' +buildopts = 'LIBTOOL=libtool' sanity_check_paths = { 'files': ["bin/yamcha"], diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb index 9565fb53d04f7d2c12b3a13d768526c2d6b723ad..3b2bedf3fba728b493cc4d67f9de7375ee34ca59 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' @@ -25,7 +27,7 @@ builddependencies = [('libtool', '2.4.2')] configopts = '--with-svm-learn=$EBROOTTINYSVM' # YamCHA ships a very old libtool by itself -makeopts = 'LIBTOOL=libtool' +buildopts = 'LIBTOOL=libtool' sanity_check_paths = { 'files': ["bin/yamcha"], diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb index 874841e03c56bd5d3c2f0a051eded1a537531844..7bbe1a361164981a1167c5708ad7a46b986dc78d 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' @@ -25,7 +27,7 @@ builddependencies = [('libtool', '2.4.2')] configopts = '--with-svm-learn=$EBROOTTINYSVM' # YamCHA ships a very old libtool by itself -makeopts = 'LIBTOOL=libtool' +buildopts = 'LIBTOOL=libtool' sanity_check_paths = { 'files': ["bin/yamcha"], diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb index 434afa641d3d2fc95cc9b2aefcfa917c8e08e3c7..e2c37e803589fddbc16930c1cc18950cd333f482 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' @@ -25,7 +27,7 @@ builddependencies = [('libtool', '2.4.2')] configopts = '--with-svm-learn=$EBROOTTINYSVM' # YamCHA ships a very old libtool by itself -makeopts = 'LIBTOOL=libtool' +buildopts = 'LIBTOOL=libtool' sanity_check_paths = { 'files': ["bin/yamcha"], diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index d1612dd40a59d066345c849ba10c166f219d7394..44f8a5205cbf8f33b0ae067a401b38a31e135c6e 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index 66b75e20b237cb66a3a6307ca7e7fbd0af51f696..6ed4579c34b9f698186b75b5968cc45f6828743c 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index afeb549913e961f8d22e7fc8dfd0fdef010b740f..592b6f211789f5bd332ff5c7374c2c4ece53132d 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index b37e073721d38df82ac5e995320b40753ccd1250..ab7055fa1c2f9e3b8afb94c1373e0cdad4662819 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..6b82f0fc243f58bf2bdbb40765dc5bf4be9e16bb --- /dev/null +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2015 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'ZPAQ' +version = '7.00' + +homepage = 'http://mattmahoney.net/dc/zpaq.html' +description = """zpaq is a free and open source (GPL v3) incremental, + journaling command-line archiver for Windows, Linux and Mac OS/X""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = ['%%(namelower)s%s.zip' % ''.join(version.split('.'))] +source_urls = ['http://mattmahoney.net/dc/'] + +builddependencies = [ + ('Perl', '5.20.1', '-bare'), # required for pod2man +] + +buildopts = " && pod2man zpaq.pod > zpaq.1" + +files_to_copy = [ + (['zpaq'], 'bin'), + (['zpaq.1'], 'share/man'), + (['libzpaq.h', 'libzpaq.cpp'], 'include'), +] + +sanity_check_paths = { + 'files': ['bin/zpaq', 'share/man/zpaq.1', 'include/libzpaq.h', 'include/libzpaq.cpp'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb index 27a2cb351dcae37e7f08a2ad3cab86b5c215aa88..2f4d2827cfbe139b3d19ab3415825de6c79e9697 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb index 02264462d8527b19a84bd447f1a581092cac992c..747cf1ffc258e1b955c6b20b0578ee4608367516 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb index a24777e7cdeda297d1823415d1bf61f92e9470ca..4dbaf2c3bd1f6382bdaa40fcdc0e9ac44ca0ee45 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb index c50ac8ac7d68eea7c2c118649bd176c8d89aee6a..2ada7561b2aa358e3ba6f307aa8b34721ace5af6 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb index b356788e95411b0bad15d99cfa92480851e4daf8..629f7f4392882f0169ff68e58c5e0d96d9582855 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb index 117938148caa7e71f8ad4703eacff2782d4bacea..d1040c0b9b45dac314546601fb9161e239f59206 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb index 2b19cc8a134cf6f341fefae6a7e638968a825296..e0a45d3a3a20018552c08135848cb06da525456a 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb index 7f28e21cd468d53230c4fc52d59b826b1e129f09..6ea68c4e6d1b0676d83406250a2d816c8d5c06b6 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb index 4ab3604a005d371ef4f07e7d86977cbf90553595..e61f976c13ef951dcf2a7612f9c3c144ac8248ac 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb index 8d73e9399ba044044f08e5cf2eb5d5b3d6bfe4d6..24e4243b5aeb325796f1db53a387546f19e07143 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '4.0.3' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb index 17c57e3a3304042acab6428b3d3cce3edbe334e3..9722f5606c7b1d8a7fc84e1a27a0e27ebde71e9c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb index 37a22ea5141c0553e42b4157ee184f939d8e5be4..9aed2a693231c0fbfe3f7b16bf3e9d5e103623c5 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb index 6f9f29cdf631c87073bddebdbca39afb04dea7b2..2e18c3c22156a780b340473ccc73979ec5faf9a1 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb index f98d18e5a69d4781455c0a1f2df386ade3d5f4be..3ea3c48ed377c2ada4dd11ff6155fac61f974a48 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb index e83e63b9a0869fbb298b61c6dda48b8f66d2ad06..d2f50aacb767556966a75691a63a1bdfbf5ecd39 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index 000fa968a2027537a9e62e958dd143d29a1b9edc..62745d552f536d90cfc2465f9ae8399d19793f81 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb index a4fd2202ff89885bfb06262e89812ea1e163cbc2..61a44ac90d9266062c92ca6dea71c5767c2e1a8c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb13ffb7223e98c0100870f3610cc99690ce0b6e --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb index 386305c22a95b74303cb0c9efa738d58596f9833..8ff26148228f15084e19e4bd084596f7f0c9882d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb index f5743c512fab91afb3e9cd76d11bb27ffc4c2381..226a64f7a2826bd8c9adf3cd373e89d042839f1e 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb index c9e43a88f7f69e3bec6c2ca943560cc853d178c0..48fed3624ccf0a9f28a71f13beae0235b3254ca6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb index 31e7f42168155816cceb70cc602b8b39522cf07f..1a47989ab0cbe72a31625e00b6741e4dea0a656a 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..33680165893befab8a80cecf497d189e9f4ba350 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb index 92d4cdf564a7e08355429377d58b3412bdb24ea6..0abf85da7ce906e940b6c4c9bf4b047215c4e690 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb index 7c76a15ac9958f5137e593670c712baf65dda381..524811dfd5da35df93b446206aae4d1bee63ac22 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb index c8968b88b1ae22432e54e59a493990e9c00f5b6e..93ea64e321f4f327c030f6462236e8aafcb57d31 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb index 2f8eb6b8b57960f4c005d8bbe003ad2d96f6330b..2349edc7b62aade492557bc97a49930d8a98082d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb index e008a0db4b6a304ae1eb8324b13871a4d0e38dd1..11979135cdf9d4a67430c680ca4ef2787254f29b 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb index c3b54c089be047e89f42b6d529324acc51e895ac..60e250ada0b92da1a60d250d3c318b19ee705a18 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb index 236fdcdc3b345f74665cb84a439cc697413ca3f9..ab6b94129ce705ef5e60cc45433e08b173753751 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..e012746ef3751a3ba0dd8a3edb5d6ec6c952f2cb --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, +not covered by any patents -- lossless data-compression library for use on virtually any +computer hardware and operating system.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb index 1ca5bc5bbe48c0ae13d1d23436fc9d1addaf574a..a100b33695c848b8820c0b54e1c6f2d12ca3d4d7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb index db3588af91c9b69968ee12e2ad1c85cff6871ba3..c028b117215e1953d68dc6e92cd6be06fa781678 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb index b471f14d936ceee6c85d7e39aa34b55ab5a9206d..9728ddb7b21079f345024d4862c7ccfcaeb3a9d7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb index 9d9923836edcc063cfe7a9b6dd831acc604dffee..f713fd7cf7121c3887f0c9d7784fce937c2471c9 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb index ac4741e288cbdcfee7544a3de91457940d28b139..1afe111ef5d4cf70894bdff96a360a993d2c0845 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb index eefeec6086d7ff1b27aa5f0d4d4946145e49e548..115527d009f9bb7e91eafddf0b5473fe86ea89a1 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb index fd81470bdd1cbc7905150001abe9d10d02fd4e09..07c5786ac6a7fcbd9c66a37935ca10b0dfb97027 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8aab4620530ca09d69f8804096b7048e44a6af61 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, +not covered by any patents -- lossless data-compression library for use on virtually any +computer hardware and operating system.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb index 7590e6e2cdc50caaf5f2b72d8d65cfd4031a4e29..70d765ec1256d368086d347733babe553d82e6bc 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb index 3dc3f9dddf42140f9843fad2688468359e0d9506..bdb56c788cdc20e0f20cb1612994bfecbdee031a 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0162abd82513ed939d9e8b6b714c6401a45ab89 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, +not covered by any patents -- lossless data-compression library for use on virtually any +computer hardware and operating system.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..1b3b05c520e6505f6941f2694be161bf27049136 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..7ceb9c2b659be12fe72576ed3cd59c826bec4bc6 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2011a3f3b4a31e53d4716b14ab5c51871e1f7a95 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb index ae12b8259f3379c273bbf60f17e8c202a065b280..a3aeeef2fbf643cd731bf067a5fad1f7327dd58d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..2c0a2d22d076d8380679bd918e46c681ee3b687d --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb index 986e3dfcf113a566135afdc4f6391ef0b52cb0c0..6cd26f940d04695c40a1ad9f19744b72167d23c6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..8b2ff4d3a049045c54f62008f3a37e2cd72d26da --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb index 27d3151f327ecc096567b4c859a09382050d192e..4fe89ed53813f5f987f720e907f274248d0daa51 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb index b2099d2818f85c6c7a343704e0052e525dc8caba..caf2dc0994d4161126dd863b1bb8069a839a904e 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb index 248f31ff427055f3c301af156bc0b5732e0e89c1..f62e4705f9ae313e6d53b076fc7de3651591a6e0 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f273b21291900b500340aed44fdc43d14a50fb1 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..434f52a5c9a1146a1fd3642af12902eb23b83622 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """ zlib is designed to be a free, general-purpose, legally + unencumbered -- that is, not covered by any patents -- lossless + data-compression library for use on virtually any computer hardware + and operating system.""" + +toolchain = {'name': 'ictce', 'version': '6.3.5'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + ('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download') +] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..67693b864b028e7cf4739dc2ae494e5fd748910c --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f986af06f4c675ba9c86ce3304a3c9ff0351a0bc --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..81a7fb149fce981f2f600c08561941a387ec69ca --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index 56872ad351dceb227365fe16d76b233892fbdc67..3a10e30ffed075a7d5f6d04d0d20598c967a3b90 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb index a29b8a9537fd0136c0f50ca0f9f4700a2c101bb4..f585c174c3956259c7a92d9164341a952e2b081a 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zsh' version = '5.0.2' diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb index 9499744d7a87a000ee2995b96887692dfe0736d1..72db46c65f0bb3f1918ab69e81e9854d433b4103 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zsh' version = '5.0.2' diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb index 942cf2610b4a4ad7bc983b0bb8a6cb2e9a4d2f07..7b996691700baddf95977fa840f51593006c62b9 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zsh' version = '5.0.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index a712549a405d56a422be0e02c3437302f946cb2a..35d2652e6207416b5753b2e9b2f45d940d228a35 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index ee14f3736951d984d3075224150600e1cb42555e..d756317c6cdd2f202bee79a7e47b3bdf87c9d26e 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -1,12 +1,14 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 1db15e90ab104773abf7950dc0e5803788f50ea2..406951135bba5fa94653b3340c48cd98037579bb 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index 9c0f9ff2c019f4a5f8e05c14b9f2893419fd2a74..d72b794ff171ae0f416a46f2ac88655e41ef1a32 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/setup.py b/setup.py index d090434633a95231d5ac8e2ae6cf25ee07a34685..6fdb0b240f7197a6794391b25609a3a6a53b61bc 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.12.0.0dev" +VERSION = "2.0.0.0dev" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) @@ -96,11 +96,9 @@ setup( version = VERSION, author = "EasyBuild community", author_email = "easybuild@lists.ugent.be", - description = """EasyBuild is a software installation framework in Python that allows you to \ -install software in a structured and robust way. -This package contains a collection of easyconfigs, i.e. simple text files written in Python syntax \ + description = """Easyconfig files are simple build specification files for EasyBuild, that specify the build parameters for software packages (version, compiler toolchain, dependency \ -versions, etc.)""", +versions, etc.).""", license = "GPLv2", keywords = "software build building installation installing compilation HPC scientific", url = "http://hpcugent.github.com/easybuild", diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index c7a289a50f11cd1047cf9906b8dc20cccf8f9587..0dac7821652ab7baf02f4af1483c911f822e75af 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -41,12 +41,15 @@ from unittest import TestCase, TestLoader, main import easybuild.main as main import easybuild.tools.options as eboptions -from easybuild.framework.easyblock import EasyBlock, get_class -from easybuild.framework.easyconfig.easyconfig import EasyConfig -from easybuild.framework.easyconfig.tools import get_paths_for -from easybuild.main import dep_graph, resolve_dependencies, process_easyconfig +from easybuild.easyblocks.generic.configuremake import ConfigureMake +from easybuild.framework.easyblock import EasyBlock +from easybuild.framework.easyconfig.easyconfig import ActiveMNS, EasyConfig, fetch_parameter_from_easyconfig_file +from easybuild.framework.easyconfig.easyconfig import get_easyblock_class +from easybuild.framework.easyconfig.tools import dep_graph, get_paths_for, process_easyconfig from easybuild.tools import config -from easybuild.tools.module_generator import det_full_module_name +from easybuild.tools.module_naming_scheme import GENERAL_CLASS +from easybuild.tools.module_naming_scheme.utilities import det_full_ec_version +from easybuild.tools.robot import resolve_dependencies # indicates whether all the single tests are OK, @@ -57,18 +60,29 @@ single_tests_ok = True class EasyConfigTest(TestCase): """Baseclass for easyconfig testcases.""" + if LooseVersion(sys.version) >= LooseVersion('2.6'): + os.environ['EASYBUILD_DEPRECATED'] = '2.0' + # initialize configuration (required for e.g. default modules_tool setting) eb_go = eboptions.parse_options() config.init(eb_go.options, eb_go.get_options_by_section('config')) + build_options = { + 'check_osdeps': False, + 'force': True, + 'robot_path': get_paths_for("easyconfigs")[0], + 'suffix_modules_path': GENERAL_CLASS, + 'valid_module_classes': config.module_classes(), + 'valid_stops': [x[0] for x in EasyBlock.get_steps()], + } + config.init_build_options(build_options=build_options) config.set_tmpdir() del eb_go log = fancylogger.getLogger("EasyConfigTest", fname=False) - name_regex = re.compile("^name\s*=\s*['\"](.*)['\"]$", re.M) - easyblock_regex = re.compile(r"^\s*easyblock\s*=['\"](.*)['\"]$", re.M) # make sure a logger is present for main main._log = log ordered_specs = None + parsed_easyconfigs = [] def process_all_easyconfigs(self): """Process all easyconfigs and resolve inter-easyconfig dependencies.""" @@ -76,16 +90,12 @@ class EasyConfigTest(TestCase): easyconfigs_path = get_paths_for("easyconfigs")[0] specs = glob.glob('%s/*/*/*.eb' % easyconfigs_path) - # parse all easyconfigs - easyconfigs = [] - for spec in specs: - easyconfigs.extend(process_easyconfig(spec, build_options={'validate': False})) + # parse all easyconfigs if they haven't been already + if not self.parsed_easyconfigs: + for spec in specs: + self.parsed_easyconfigs.extend(process_easyconfig(spec)) - build_options = { - 'robot_path': easyconfigs_path, - 'force': True, - } - self.ordered_specs = resolve_dependencies(easyconfigs, build_options=build_options) + self.ordered_specs = resolve_dependencies(self.parsed_easyconfigs) def test_dep_graph(self): """Unit test that builds a full dependency graph.""" @@ -118,14 +128,14 @@ class EasyConfigTest(TestCase): self.process_all_easyconfigs() def mk_dep_mod_name(spec): - return tuple(det_full_module_name(spec).split(os.path.sep)) + return tuple(ActiveMNS().det_full_module_name(spec).split(os.path.sep)) # construct a dictionary: (name, installver) tuple to dependencies depmap = {} for spec in self.ordered_specs: builddeps = map(mk_dep_mod_name, spec['builddependencies']) deps = map(mk_dep_mod_name, spec['unresolved_deps']) - key = tuple(spec['module'].split(os.path.sep)) + key = tuple(spec['full_mod_name'].split(os.path.sep)) depmap.update({key: [builddeps, deps]}) # iteratively expand list of (non-build) dependencies until we reach the end (toolchain) @@ -157,40 +167,76 @@ class EasyConfigTest(TestCase): conflicts = True self.assertFalse(conflicts, "No conflicts detected") + def test_sanity_check_paths(self): + """Make sure specified sanity check paths adher to the requirements.""" + + if self.ordered_specs is None: + self.process_all_easyconfigs() + + for ec in self.parsed_easyconfigs: + ec_scp = ec['ec']['sanity_check_paths'] + if ec_scp != {}: + # if sanity_check_paths is specified (i.e., non-default), it must adher to the requirements + # both 'files' and 'dirs' keys, both with list values and with at least one a non-empty list + error_msg = "sanity_check_paths for %s does not meet requirements: %s" % (ec['spec'], ec_scp) + self.assertEqual(sorted(ec_scp.keys()), ['dirs', 'files'], error_msg) + self.assertTrue(isinstance(ec_scp['dirs'], list), error_msg) + self.assertTrue(isinstance(ec_scp['files'], list), error_msg) + self.assertTrue(ec_scp['dirs'] or ec_scp['files'], error_msg) + + def test_easyconfig_locations(self): + """Make sure all easyconfigs files are in the right location.""" + easyconfig_dirs_regex = re.compile(r'/easybuild/easyconfigs/[a-z]/[^/]+$') + topdir = os.path.dirname(os.path.dirname(os.path.dirname(__file__))) + for (dirpath, _, filenames) in os.walk(topdir): + # ignore git/svn dirs + if '/.git/' in dirpath or '/.svn/' in dirpath: + continue + # check whether list of .eb files is non-empty + easyconfig_files = [fn for fn in filenames if fn.endswith('eb')] + if easyconfig_files: + # check whether path matches required pattern + if not easyconfig_dirs_regex.search(dirpath): + # only exception: TEMPLATE.eb + if not (dirpath.endswith('/easybuild/easyconfigs') and filenames == ['TEMPLATE.eb']): + self.assertTrue(False, "List of easyconfig files in %s is empty: %s" % (dirpath, filenames)) def template_easyconfig_test(self, spec): - """Test whether all easyconfigs can be initialized.""" + """Tests for an individual easyconfig: parsing, instantiating easyblock, check patches, ...""" # set to False, so it's False in case of this test failing global single_tests_ok prev_single_tests_ok = single_tests_ok single_tests_ok = False - f = open(spec, 'r') - spectxt = f.read() - f.close() - - # determine software name directly from easyconfig file - res = self.name_regex.search(spectxt) - if res: - name = res.group(1) + # parse easyconfig + ecs = process_easyconfig(spec) + if len(ecs) == 1: + ec = ecs[0]['ec'] else: - self.assertTrue(False, "Obtained software name directly from easyconfig file") + self.assertTrue(False, "easyconfig %s does not contain blocks, yields only one parsed easyconfig" % spec) - # parse easyconfig - ec = EasyConfig(spec, build_options={'validate': False}) + # check easyconfig file name + expected_fn = '%s-%s.eb' % (ec['name'], det_full_ec_version(ec)) + msg = "Filename '%s' of parsed easconfig matches expected filename '%s'" % (spec, expected_fn) + self.assertEqual(os.path.basename(spec), expected_fn, msg) # sanity check for software name + name = fetch_parameter_from_easyconfig_file(spec, 'name') self.assertTrue(ec['name'], name) # try and fetch easyblock spec from easyconfig - easyblock = self.easyblock_regex.search(spectxt) - if easyblock: - easyblock = easyblock.group(1) + easyblock = fetch_parameter_from_easyconfig_file(spec, 'easyblock') # instantiate easyblock with easyconfig file - app_class = get_class(easyblock, name=name) - app = app_class(spec, build_options={'validate_ec': False}) + app_class = get_easyblock_class(easyblock, name=name) + + # check that automagic fallback to ConfigureMake isn't done (deprecated behaviour) + fn = os.path.basename(spec) + error_msg = "%s relies on automagic fallback to ConfigureMake, should use easyblock = 'ConfigureMake' instead" % fn + self.assertTrue(easyblock or not app_class is ConfigureMake, error_msg) + + app = app_class(ec) # more sanity checks self.assertTrue(name, app.name) @@ -220,9 +266,16 @@ def template_easyconfig_test(self, spec): msg = "Patch file %s is available for %s" % (ext_patch_full, specfn) self.assertTrue(os.path.isfile(ext_patch_full), msg) + # check whether all extra_options defined for used easyblock are defined + for key in app.extra_options(): + self.assertTrue(key in app.cfg) + app.close_log() os.remove(app.logfile) + # cache the parsed easyconfig, to avoid that it is parsed again + self.parsed_easyconfigs.append(ecs[0]) + # test passed, so set back to True single_tests_ok = True and prev_single_tests_ok diff --git a/test/easyconfigs/suite.py b/test/easyconfigs/suite.py index 0c775762c4cdd1c723c0dd59032e59d5e0bf4c05..f936405be63ba8655e98707462070603601217ea 100644 --- a/test/easyconfigs/suite.py +++ b/test/easyconfigs/suite.py @@ -38,17 +38,14 @@ import tempfile import unittest from vsc import fancylogger -import easybuild.tools.config as config +import easybuild.tools.build_log # initialize EasyBuild logging, so we disable it import test.easyconfigs.easyconfigs as e -# initialize logger for all the unit tests -fd, log_fn = tempfile.mkstemp(prefix='easybuild-easyconfigs-tests-', suffix='.log') -os.close(fd) -os.remove(log_fn) -fancylogger.logToFile(log_fn) -fancylogger.setLogLevelDebug() +# disable all logging to significantly speed up tests +fancylogger.disableDefaultHandlers() +fancylogger.setLogLevelError() -config.variables['tmp_logdir'] = tempfile.mkdtemp(prefix='easyconfigs_test_') +os.environ['EASYBUILD_TMP_LOGDIR'] = tempfile.mkdtemp(prefix='easyconfigs_test_') # call suite() for each module and then run them all SUITE = unittest.TestSuite([x.suite() for x in [e]]) @@ -64,11 +61,8 @@ except ImportError, err: sys.stderr.write("WARNING: xmlrunner module not available, falling back to using unittest...\n\n") res = unittest.TextTestRunner().run(SUITE) -fancylogger.logToFile(log_fn, enable=False) -shutil.rmtree(config.variables['tmp_logdir']) - -for f in glob.glob('%s*' % log_fn): - os.remove(f) +shutil.rmtree(os.environ['EASYBUILD_TMP_LOGDIR']) +del os.environ['EASYBUILD_TMP_LOGDIR'] if not res.wasSuccessful(): sys.stderr.write("ERROR: Not all tests were successful.\n")