From c79aade71092786dd369226592661b30d1562d6d Mon Sep 17 00:00:00 2001
From: Alexander Mahura <alexander.mahura@helsinki.fi>
Date: Tue, 23 Apr 2024 12:49:11 +0300
Subject: [PATCH] updated run_obsall scripts

---
 run_obsall.py |  3 ---
 run_obsall.sh | 34 +++++++++++++++++++++++++++-------
 2 files changed, 27 insertions(+), 10 deletions(-)

diff --git a/run_obsall.py b/run_obsall.py
index 148d62946..3e2e8adec 100644
--- a/run_obsall.py
+++ b/run_obsall.py
@@ -5,7 +5,6 @@
 import sys
 import subprocess
 
-## IN IMPLEMENTATION
 ## --- Processing ground-based observations (SYNOP)
 print('**********************************************************')
 print('DestinE Climate Digital Twin - OBSALL Apps')
@@ -14,7 +13,6 @@ print('**********************************************************')
 command_synop_run = "cd SYNOP; pwd; ./main_synop.sh; exit 0"
 subprocess.run(command_synop_run, shell=True, check=True, executable="/bin/bash") 
 
-## IN IMPLEMENTATION
 ## --- Processing radiosounding observations (TEMP)
 print('**********************************************************')
 print('DestinE Climate Digital Twin - OBSALL Apps')
@@ -23,7 +21,6 @@ print('**********************************************************')
 command_radsound_run = "cd RADSOUND; pwd; ./main_radsound.sh; exit 0"
 subprocess.run(command_radsound_run, shell=True, check=True, executable="/bin/bash")
 
-## IN IMPLEMENTATION
 ## Processing satellite observations (AMSU-A)
 print('**********************************************************')
 print('DestinE Climate Digital Twin - OBSALL Apps')
diff --git a/run_obsall.sh b/run_obsall.sh
index a0ce04079..9b7e60608 100755
--- a/run_obsall.sh
+++ b/run_obsall.sh
@@ -3,11 +3,27 @@ echo "Bash version ${BASH_VERSION}..."
 ## /scratch/project_465000454/devaraju/SW/LUMI-23.03/C/python-climatedt/bin/python
 ## OBSALL Apps (3 parts: SYNOP, TEMP, AMSU-A observations)
 
+## Loading necessary modules ...
+module use /project/project_465000454/devaraju/modules/LUMI/23.03/C
+module load LUMI/23.03
+module load partition/C
+module load PrgEnv-gnu
+module load ecCodes/2.32.0-cpeCray-23.03.lua
+module load odb_api/0.18.1-cpeCray-23.03.lua
+module load python-climatedt/3.11.3-cpeCray-23.03.lua
+module load pyfdb/0.0.2-cpeCray-23.03.lua
+module load cray-hdf5/1.12.2.3
+module load cray-netcdf/4.9.0.3
+module load rttov/13.2
+module load radsim/3.2
+module load fdb/5.11.94-cpeCray-23.03.lua
+module load eckit/1.25.0-cpeCray-23.03.lua
+module load metkit/1.11.0-cpeCray-23.03.lua
+
 ## Import required libraries
 ## import sys
 ## import subprocess
 
-## IN IMPLEMENTATION
 ## --- Processing ground-based observations (SYNOP)
 echo "**********************************************************"
 echo "DestinE Climate Digital Twin - OBSALL Apps"
@@ -17,11 +33,11 @@ echo "**********************************************************"
 ##subprocess.run(command_synop_run, shell=True, check=True, executable="/bin/bash") 
 cd ${SRC_OBSALL_DIR}
 pwd
-cd SYNOP; pwd
+cd SYNOP
+pwd
 ./main_synop.sh
 pwd
 
-## IN IMPLEMENTATION
 ## --- Processing radiosounding observations (TEMP)
 echo "**********************************************************"
 echo "DestinE Climate Digital Twin - OBSALL Apps"
@@ -31,11 +47,11 @@ echo "**********************************************************"
 ##subprocess.run(command_radsound_run, shell=True, check=True, executable="/bin/bash")
 cd ${SRC_OBSALL_DIR}
 pwd
-cd RADSOUND; pwd
+cd RADSOUND
+pwd
 ./main_radsound.sh
 pwd
 
-## IN IMPLEMENTATION
 ## Processing satellite observations (AMSU-A)
 echo "**********************************************************"
 echo "DestinE Climate Digital Twin - OBSALL Apps"
@@ -43,5 +59,9 @@ echo "--- Processing satelitte-based observations (AMSU-A)"
 echo "**********************************************************"
 ##command_satellite_run = "cd SATELLITE; pwd; ./main_satellite.sh; exit 0"
 ##subprocess.run(command_satellite_run, shell=True, check=True, executable="/bin/bash") 
-#cd SATELLITE; pwd
-#./main_satellite.sh
+cd ${SRC_OBSALL_DIR}
+pwd
+cd SATELLITE
+pwd
+./main_amsua.sh
+pwd
-- 
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