From fce9ef560b7de9a263d77fbd53923e9252acd437 Mon Sep 17 00:00:00 2001
From: Alexander Mahura <alexander.mahura@helsinki.fi>
Date: Thu, 25 Apr 2024 02:12:18 +0300
Subject: [PATCH] updated scripts in AMSU-A Part

---
 SATELLITE/amsua_mod.sh    |  3 ++-
 SATELLITE/amsua_obs.sh    |  3 ++-
 SATELLITE/gsv_mod_data.sh | 23 +++++++++++++++--------
 SATELLITE/main_amsua.sh   |  8 +++++++-
 SATELLITE/set_env.sh      |  5 +++--
 5 files changed, 29 insertions(+), 13 deletions(-)

diff --git a/SATELLITE/amsua_mod.sh b/SATELLITE/amsua_mod.sh
index 5d865aeb5..9314e60cd 100755
--- a/SATELLITE/amsua_mod.sh
+++ b/SATELLITE/amsua_mod.sh
@@ -16,7 +16,8 @@ if [ $process_mode == 'rf' ]; then
   obs_datafile=$amsua_input/amsua_obs_$cdate_s2$midpoint_time.dat
   model_datafile=$gsv_depo_processed/amsu-a_input_${cdate_s2}_limited.grb
 elif [ $process_mode == 'cli' ]; then
-  obs_datafile=$scriptdir/other_files/amsua_locations_sample.dat
+  ##obs_datafile=$scriptdir/other_files/amsua_locations_sample.dat #LT
+  obs_datafile=other_files/amsua_locations_sample.dat  #AM
   model_datafile=$gsv_depo/$cdate/amsu-a_input_${cdate_s2}_limited.grb
 fi
   
diff --git a/SATELLITE/amsua_obs.sh b/SATELLITE/amsua_obs.sh
index 5498cddf1..4bd9eac4b 100755
--- a/SATELLITE/amsua_obs.sh
+++ b/SATELLITE/amsua_obs.sh
@@ -51,7 +51,8 @@ if [[ $process_mode == 'rf' || $process_mode == 'dummy' ]]; then
   fi
   start_time=$end_time
 elif [ $process_mode == 'cli' ]; then
-  test -f $outf || cp $scriptdir/other_files/amsua_locations_sample.dat $outf
+  test -f $outf || cp other_files/amsua_locations_sample.dat $outf  # AM
+  ## test -f $outf || cp $scriptdir/other_files/amsua_locations_sample.dat $outf # LT
 fi
 
 echo "Exiting amsua_obs.sh of AMSU-A workflow."
diff --git a/SATELLITE/gsv_mod_data.sh b/SATELLITE/gsv_mod_data.sh
index c84bd577d..28c1a1d30 100755
--- a/SATELLITE/gsv_mod_data.sh
+++ b/SATELLITE/gsv_mod_data.sh
@@ -82,8 +82,11 @@ fi
 
 cdo merge $gsv_depo/$cdate_s2$hour/t_$res.nc $gsv_depo/$cdate_s2$hour/q_$res.nc $gsv_depo/$cdate_s2$hour/clwc_$res.nc  $gsv_depo/$cdate_s2$hour/pl.nc
 
-lsm_static=$scriptdir/other_files/lsm_$res.grb1 #nc
-zsurf_static=$scriptdir/other_files/z_surf_$res.grb1 #nc
+##lsm_static=$scriptdir/other_files/lsm_$res.grb1 #nc LT
+##zsurf_static=$scriptdir/other_files/z_surf_$res.grb1 #nc LT
+lsm_static=other_files/lsm_$res.grb1 #nc AM
+zsurf_static=other_files/z_surf_$res.grb1 #nc AM
+
 u10=$gsv_depo/$cdate_s2$hour/10u_$res.nc
 u10c=$gsv_depo/$cdate_s2$hour/10u_${res}_cdo_copy.nc
 v10=$gsv_depo/$cdate_s2$hour/10v_$res.nc
@@ -114,12 +117,16 @@ cdo -f nc copy $ci $cic
 intp_file=$gsv_depo/$cdate_s2$hour/ml.nc
 
 # vct_dat: get A and B coefficients of target vertical grid
-vct_dat=$scriptdir/other_files/vct_91.dat
+##vct_dat=$scriptdir/other_files/vct_91.dat  # LT
+vct_dat=other_files/vct_91.dat  # AM
 
 # run python script: convert_pl2ml.py
 python3 convert_pl2ml.py $gsv_depo/$cdate_s2$hour/pl.nc $sp $vct_dat ${intp_file} $lat_S $lat_N $lon_W $lon_E
-  
-$scriptdir/nc2grib.exe <<EOF
+
+#LT
+##$scriptdir/nc2grib.exe <<EOF
+# AM
+cat > nc2grib.exe << EOF
   &param
     infile3d = "$intp_file"
     file_u10 = "$gsv_depo/$cdate_s2$hour/10u_${res}_cdo_copy.nc"
@@ -129,10 +136,10 @@ $scriptdir/nc2grib.exe <<EOF
     file_ci = "$gsv_depo/$cdate_s2$hour/avg_siconc_${res}_cdo_copy.nc"
     file_skt = "$gsv_depo/$cdate_s2$hour/skt_${res}_cdo_copy.nc"
     file_sp = "$gsv_depo/$cdate_s2$hour/sp_${res}_cdo_copy.nc"
-    file_lsm = "$scriptdir/other_files/lsm_$res.nc"
-    file_z = "$scriptdir/other_files/z_surf_$res.nc"
+    file_lsm = "other_files/lsm_$res.nc"
+    file_z = "other_files/z_surf_$res.nc"
     coordsfile = "$vct_dat"
-    grib_samples = '$scriptdir/other_files/sample_$res.grib1'
+    grib_samples = 'other_files/sample_$res.grib1'
     res='$res'
     outdir = "$gsv_depo/$cdate_s2$hour/"
     outfile = "amsu-a_input_$cdate_s2.grb"
diff --git a/SATELLITE/main_amsua.sh b/SATELLITE/main_amsua.sh
index 9dbeaecdd..ea462b5a9 100755
--- a/SATELLITE/main_amsua.sh
+++ b/SATELLITE/main_amsua.sh
@@ -91,7 +91,13 @@ echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
 ##test -f nc2grib.exe || ftn -I$MY_ENV/include -L$MY_ENV/lib64 -leccodes_f90 nc2grib.f90 -o nc2grib.exe
 #exit 1
 echo " Compiling nc2grib.exe for converting from NetCDF to GRIB format ... "
-ftn -I$MY_ENV/include -L$MY_ENV/lib64 -leccodes_f90 nc2grib.f90 -o nc2grib.exe
+### after Apr 2024 Lumi break stop working (line below) 
+#ftn -I$MY_ENV/include -L$MY_ENV/lib64 -leccodes_f90 nc2grib.f90 -o nc2grib.exe
+### tmp fix is below / AM
+ftn -I/projappl/project_465000454/jlento/PrgEnv-gnu/8.4.0/include -L/projappl/project_465000454/jlento/PrgEnv-gnu/8.4.0/lib64 -leccodes_f90 nc2grib.f90 -o nc2grib.exe
+
+echo " ls -all nc2grib.exe"
+pwd
 
 tmp_file_tstamps=$timestamp_files/file_with_tstamps_$sdate.txt
 rm -f $tmp_file_tstamps
diff --git a/SATELLITE/set_env.sh b/SATELLITE/set_env.sh
index 188f4f241..e4d91772a 100755
--- a/SATELLITE/set_env.sh
+++ b/SATELLITE/set_env.sh
@@ -14,7 +14,7 @@ if [ $part == 'a' ]; then
 
   ### The place where you have put the AMSU-A workflow scripts. ###
   #scriptdir=/projappl/project_465000454/lautuppi/for_Alexander/AMSUA_workflow
-  scriptdir=/projappl/project_465000454/ama/AMSUA
+  #scriptdir=/projappl/project_465000454/ama/AMSUA # used in testing by AM
   
   ### Set some variables that define where you want the workflow to run and process data. ###
   # You can change these to be whatever you like.
@@ -122,7 +122,8 @@ if [ $part == 'a' ]; then
 #  time_range=60
 #
 echo " Exporting needed environment variables (i.e., global variables accessible by all processes) ..."
-  export scratch scriptdir amsua_process_root amsua_obs_database final_output_dir mod_amsua_odb mother_GSV_file cdate_mid time_range process_mode radsim_run rttov_coefs remove_files grid res FDB5_CONFIG_FILE GSV_WEIGHTS_PATH GSV_TEST_FILES GRID_DEFINITION_PATH PYTHONPATH MY_ENV PATH CPATH LIBRARY_PATH LD_LIBRARY_PATH
+## AM - excluded scriptdir from below export
+  export scratch amsua_process_root amsua_obs_database final_output_dir mod_amsua_odb mother_GSV_file cdate_mid time_range process_mode radsim_run rttov_coefs remove_files grid res FDB5_CONFIG_FILE GSV_WEIGHTS_PATH GSV_TEST_FILES GRID_DEFINITION_PATH PYTHONPATH MY_ENV PATH CPATH LIBRARY_PATH LD_LIBRARY_PATH
   export sdate edate step_h lat_S lat_N lon_W lon_E
 
   # Load modules etc.
-- 
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