From e13c9295c037accb15ed892a3d7f0e77b393ab7e Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Tue, 24 Oct 2017 15:44:01 +0200 Subject: [PATCH 01/15] Update documentation config to show automodule docs --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 3d0f1b624..ce7fcefa7 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('../..')) +sys.path.insert(0, os.path.abspath('..')) # -- General configuration ------------------------------------------------ -- GitLab From 6d3b441a3271be78d446f5043e712c029bfa8f47 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Tue, 24 Oct 2017 16:03:10 +0200 Subject: [PATCH 02/15] Update documentation config to show automodule docs --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index ce7fcefa7..65eb988b7 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('..')) +sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ -- GitLab From 3553e95c74826aa70ad1e1555713969f36ebd191 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Tue, 24 Oct 2017 16:14:26 +0200 Subject: [PATCH 03/15] Update documentation config to show automodule docs --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 65eb988b7..e7efe5af1 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('.')) +sys.path.insert(0, os.path.abspath('../autosubmit')) # -- General configuration ------------------------------------------------ -- GitLab From 45a5404f4774dd66cf13f32df77639c1a6ec3609 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Tue, 24 Oct 2017 16:21:13 +0200 Subject: [PATCH 04/15] Update documentation config to show automodule docs --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index e7efe5af1..98b7a9d63 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('../autosubmit')) +sys.path.insert(0, os.path.abspath('../../..')) # -- General configuration ------------------------------------------------ -- GitLab From 1034519ac694d8054664eda8dd6374dcba2fc0a4 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:17:50 +0100 Subject: [PATCH 05/15] Change of configuration for autodoc --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 98b7a9d63..b67e79e03 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('../../..')) +sys.path.insert(0, os.path.abspath('../../autosubmit')) # -- General configuration ------------------------------------------------ -- GitLab From cb2afe70ee08b44d8bbc496c772ad1640d0a30e4 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:37:26 +0100 Subject: [PATCH 06/15] Added portalocker module in configuration for autodoc --- docs/source/conf.py | 1 + 1 file changed, 1 insertion(+) diff --git a/docs/source/conf.py b/docs/source/conf.py index b67e79e03..9307003c0 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -110,6 +110,7 @@ pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False +autodoc_mock_imports = ["portalocker"] # -- Options for HTML output ---------------------------------------------- -- GitLab From 4f314bd69699e7c7ceebb3828f6ba7f1d25320b9 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:40:58 +0100 Subject: [PATCH 07/15] Added missing libraries to conf for autodoc --- docs/source/conf.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 9307003c0..1c9f1abb8 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -110,7 +110,9 @@ pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False -autodoc_mock_imports = ["portalocker"] +autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", + 'numpy', 'matplotlib', 'saga-python', 'paramiko', + 'mock', "networkx"] # -- Options for HTML output ---------------------------------------------- -- GitLab From f4ad0d413aaf9e1a18a8df3801eb5cafa01b5998 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:44:08 +0100 Subject: [PATCH 08/15] Added missing libraries to conf for autodoc --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 1c9f1abb8..903906f91 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -111,7 +111,7 @@ pygments_style = 'sphinx' todo_include_todos = False autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", - 'numpy', 'matplotlib', 'saga-python', 'paramiko', + 'numpy', 'matplotlib', 'saga', 'saga-python', 'paramiko', 'mock', "networkx"] # -- Options for HTML output ---------------------------------------------- -- GitLab From 8ae024f7d7c0d561ed484327db8d1f9cf4a48626 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:49:15 +0100 Subject: [PATCH 09/15] Added missing libraries to conf for autodoc --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 903906f91..708dfc9f9 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -112,7 +112,7 @@ todo_include_todos = False autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", 'numpy', 'matplotlib', 'saga', 'saga-python', 'paramiko', - 'mock', "networkx"] + 'mock', "networkx", 'bscearth.utils'] # -- Options for HTML output ---------------------------------------------- -- GitLab From 115984a1c3e8003c73d189df1fa0a39db7859e9b Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:52:40 +0100 Subject: [PATCH 10/15] Added missing libraries to conf for autodoc --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 708dfc9f9..2cfda8432 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -112,7 +112,7 @@ todo_include_todos = False autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", 'numpy', 'matplotlib', 'saga', 'saga-python', 'paramiko', - 'mock', "networkx", 'bscearth.utils'] + 'mock', "networkx", 'bscearth.utils', 'bscearth.utils.log'] # -- Options for HTML output ---------------------------------------------- -- GitLab From 735ba7f93b70076ff7627b2b6a3dbe144c6cf6bd Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 17:56:24 +0100 Subject: [PATCH 11/15] Added all bscearth libraries to conf for autodoc --- docs/source/conf.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 2cfda8432..c2839d244 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -112,7 +112,8 @@ todo_include_todos = False autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", 'numpy', 'matplotlib', 'saga', 'saga-python', 'paramiko', - 'mock', "networkx", 'bscearth.utils', 'bscearth.utils.log'] + 'mock', "networkx", 'bscearth.utils', 'bscearth.utils.log', 'bscearth.utils.config_parser', + 'bscearth.utils.date'] # -- Options for HTML output ---------------------------------------------- -- GitLab From 969bcbfb8e12ed2b60a20161fb29e69700cfec62 Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 18:01:36 +0100 Subject: [PATCH 12/15] Fixed root relative path in doc config --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index c2839d244..d3e3ad897 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('../../autosubmit')) +sys.path.insert(0, os.path.abspath('../../..')) # -- General configuration ------------------------------------------------ -- GitLab From 0dabc1ffc65dd09ec2485a1669a36d597914b96a Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 18:03:46 +0100 Subject: [PATCH 13/15] Fixed root relative path in doc config --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index d3e3ad897..1164f751a 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('../../..')) +sys.path.insert(0, os.path.abspath('../../autosubmit/..')) # -- General configuration ------------------------------------------------ -- GitLab From 934b2bee9a911a9c8cf8662ea44080ad7f4d9a4b Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 18:18:26 +0100 Subject: [PATCH 14/15] Added missing libraries to conf for autodoc --- docs/source/conf.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index 1164f751a..bc46f9a46 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -sys.path.insert(0, os.path.abspath('../../autosubmit/..')) +sys.path.insert(0, os.path.abspath('../..')) # -- General configuration ------------------------------------------------ @@ -111,8 +111,8 @@ pygments_style = 'sphinx' todo_include_todos = False autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", - 'numpy', 'matplotlib', 'saga', 'saga-python', 'paramiko', - 'mock', "networkx", 'bscearth.utils', 'bscearth.utils.log', 'bscearth.utils.config_parser', + 'numpy', 'matplotlib', 'matplotlib.pyplot', 'matplotlib.gridspec', 'matplotlib.patches', 'saga', 'saga-python', 'paramiko', + 'mock', "networkx", 'networkx.algorithms', 'bscearth.utils', 'bscearth.utils.log', 'bscearth.utils.config_parser', 'bscearth.utils.date'] # -- Options for HTML output ---------------------------------------------- -- GitLab From 2646ba027a2e2ca397cd28acb5c15fd263917d0f Mon Sep 17 00:00:00 2001 From: Larissa Batista Leite Date: Fri, 10 Nov 2017 18:20:52 +0100 Subject: [PATCH 15/15] Added missing libraries to conf for autodoc --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index bc46f9a46..d00aae8d6 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -112,7 +112,7 @@ todo_include_todos = False autodoc_mock_imports = ["portalocker", "argparse", "python-dateutil", "pydotplus", "pyparsing", 'numpy', 'matplotlib', 'matplotlib.pyplot', 'matplotlib.gridspec', 'matplotlib.patches', 'saga', 'saga-python', 'paramiko', - 'mock', "networkx", 'networkx.algorithms', 'bscearth.utils', 'bscearth.utils.log', 'bscearth.utils.config_parser', + 'mock', "networkx", 'networkx.algorithms.dag', 'bscearth.utils', 'bscearth.utils.log', 'bscearth.utils.config_parser', 'bscearth.utils.date'] # -- Options for HTML output ---------------------------------------------- -- GitLab