From a5805f0d37da256bc1e468329db10d544413dd93 Mon Sep 17 00:00:00 2001
From: Juan <juan.acosta@bsc.es>
Date: Wed, 19 Dec 2018 15:12:34 +0100
Subject: [PATCH 1/2] Add new file to create surface restoring (2D) files from
 ORAS5 nudging files (3D)

---
 create_restoring_file.sh | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100644 create_restoring_file.sh

diff --git a/create_restoring_file.sh b/create_restoring_file.sh
new file mode 100644
index 0000000..724ef50
--- /dev/null
+++ b/create_restoring_file.sh
@@ -0,0 +1,35 @@
+#!/bin/bash
+#SBATCH -n 1
+#SBATCH -t 24:00:00
+#SBATCH -J surf_files 
+#SBATCH -o /esarchive/scratch/jacosta/TMP/Create_restoring/slurm-%j.out
+#SBATCH -e /esarchive/scratch/jacosta/TMP/Create_restoring/slurm-%j.err
+
+module load NCO
+module load CDO
+
+set -evx 
+for member in {0..0}; do
+for year in {1958..1978} ; do
+cdo sellevidx,1 /esarchive/releases/nudging/ocean/s5/ORCA025L75/fc${member}/s5_fc${member}_${year}.nc /esarchive/scratch/jacosta/TMP/Create_restoring/s5_fc${member}_${year}_surface.nc
+done
+done
+
+path2=/esarchive/scratch/jacosta/TMP/Create_restoring/
+for member in {0..0}; do
+path=/esarchive/releases/surface_restoring/ocean/s5/ORCA025L75/fc${member}/
+for year in {1958..1978} ; do
+cdo select,name=votemper ${path2}/s5_fc${member}_${year}_surface.nc  ${path2}/sst_tmp_${year}.nc
+cdo select,name=vosaline  ${path2}/s5_fc${member}_${year}_surface.nc  ${path2}/sss_tmp_${year}.nc
+cdo chname,vosaline,so  ${path2}/sss_tmp_${year}.nc  ${path2}/sss_1m_data_${year}_f.nc
+cdo chname,votemper,thetao  ${path2}/sst_tmp_${year}.nc  ${path2}/sst_1m_data_${year}_f.nc
+ncrename -O -v deptht,nav_lev  ${path2}/sst_1m_data_${year}_f.nc  ${path}/sst_restore_data_y${year}.nc
+ncrename -O -v deptht,nav_lev  ${path2}/sss_1m_data_${year}_f.nc  ${path}/sss_restore_data_y${year}.nc
+#ncwa -a nav_lev  ${path2}/sss_1m_data_${year}_f2.nc  ${path}/sss_restore_data_y${year}.nc
+#ncwa -a nav_lev  ${path2}/sst_1m_data_${year}_f2.nc  ${path}/sst_restore_data_y${year}.nc
+#rm ${path2}/*.nc
+rm ${path2}/ss*_1m_data_*_f*.nc
+rm ${path2}/ss*_tmp_*.nc 
+
+done
+done
-- 
GitLab


From 2704d082a84510f022006ca3561c5a7321f42a4b Mon Sep 17 00:00:00 2001
From: Juan <juan.acosta@bsc.es>
Date: Wed, 19 Dec 2018 16:22:06 +0100
Subject: [PATCH 2/2] Delete create_restoring_file.sh

---
 create_restoring_file.sh | 35 -----------------------------------
 1 file changed, 35 deletions(-)
 delete mode 100644 create_restoring_file.sh

diff --git a/create_restoring_file.sh b/create_restoring_file.sh
deleted file mode 100644
index 724ef50..0000000
--- a/create_restoring_file.sh
+++ /dev/null
@@ -1,35 +0,0 @@
-#!/bin/bash
-#SBATCH -n 1
-#SBATCH -t 24:00:00
-#SBATCH -J surf_files 
-#SBATCH -o /esarchive/scratch/jacosta/TMP/Create_restoring/slurm-%j.out
-#SBATCH -e /esarchive/scratch/jacosta/TMP/Create_restoring/slurm-%j.err
-
-module load NCO
-module load CDO
-
-set -evx 
-for member in {0..0}; do
-for year in {1958..1978} ; do
-cdo sellevidx,1 /esarchive/releases/nudging/ocean/s5/ORCA025L75/fc${member}/s5_fc${member}_${year}.nc /esarchive/scratch/jacosta/TMP/Create_restoring/s5_fc${member}_${year}_surface.nc
-done
-done
-
-path2=/esarchive/scratch/jacosta/TMP/Create_restoring/
-for member in {0..0}; do
-path=/esarchive/releases/surface_restoring/ocean/s5/ORCA025L75/fc${member}/
-for year in {1958..1978} ; do
-cdo select,name=votemper ${path2}/s5_fc${member}_${year}_surface.nc  ${path2}/sst_tmp_${year}.nc
-cdo select,name=vosaline  ${path2}/s5_fc${member}_${year}_surface.nc  ${path2}/sss_tmp_${year}.nc
-cdo chname,vosaline,so  ${path2}/sss_tmp_${year}.nc  ${path2}/sss_1m_data_${year}_f.nc
-cdo chname,votemper,thetao  ${path2}/sst_tmp_${year}.nc  ${path2}/sst_1m_data_${year}_f.nc
-ncrename -O -v deptht,nav_lev  ${path2}/sst_1m_data_${year}_f.nc  ${path}/sst_restore_data_y${year}.nc
-ncrename -O -v deptht,nav_lev  ${path2}/sss_1m_data_${year}_f.nc  ${path}/sss_restore_data_y${year}.nc
-#ncwa -a nav_lev  ${path2}/sss_1m_data_${year}_f2.nc  ${path}/sss_restore_data_y${year}.nc
-#ncwa -a nav_lev  ${path2}/sst_1m_data_${year}_f2.nc  ${path}/sst_restore_data_y${year}.nc
-#rm ${path2}/*.nc
-rm ${path2}/ss*_1m_data_*_f*.nc
-rm ${path2}/ss*_tmp_*.nc 
-
-done
-done
-- 
GitLab