############################################## library(s2dv) ############################################## test_that("1. Sanity checks", { expect_error( CST_SelectPeriodOnData(1:10), paste0("Parameter 'data' must be of the class 's2dv_cube'.") ) expect_error(SelectPeriodOnDates('x', start = list(1,1), end = list(1,1)), "invalid 'trim' argument") }) ############################################## test_that("2. Output checks", { # Lluis issue #8: dates <- c(seq(as.Date("02-05-1993", "%d-%m-%Y", tz = 'UTC'), as.Date("01-12-1993","%d-%m-%Y", tz = 'UTC'), "day"), seq(as.Date("02-05-1994", "%d-%m-%Y", tz = 'UTC'), as.Date("01-12-1994","%d-%m-%Y", tz = 'UTC'), "day"), seq(as.Date("02-05-1995", "%d-%m-%Y", tz = 'UTC'), as.Date("01-12-1995","%d-%m-%Y", tz = 'UTC'), "day")) dim(dates) <- c(time = 214, file_date = 3) output <- c(seq(as.Date("21-06-1993", "%d-%m-%Y", tz = 'UTC'), as.Date("21-09-1993","%d-%m-%Y", tz = 'UTC'), "day"), seq(as.Date("21-06-1994", "%d-%m-%Y", tz = 'UTC'), as.Date("21-09-1994","%d-%m-%Y", tz = 'UTC'), "day"), seq(as.Date("21-06-1995", "%d-%m-%Y", tz = 'UTC'), as.Date("21-09-1995","%d-%m-%Y", tz = 'UTC'), "day")) dim(output) <- c(time = 93, file_date = 3) expect_equal( SelectPeriodOnDates(dates, list(21,6),list(21,9), time_dim = 'time'), output ) dates <- s2dv::Reorder(dates, c('file_date', 'time')) output <- s2dv::Reorder(output, c('file_date', 'time')) expect_equal( SelectPeriodOnDates(dates, list(21,6),list(21,9), time_dim = 'time'), output ) # test different common dimensions exp <- array(1:61, dim = c(time = 61)) Dates <- c(seq(as.Date("01-05-2000", format = "%d-%m-%Y"), as.Date("30-06-2000", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-05-2001", format = "%d-%m-%Y"), as.Date("30-06-2001", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-05-2002", format = "%d-%m-%Y"), as.Date("30-06-2002", format = "%d-%m-%Y"), by = 'day')) dim(Dates) <- c(time = 61, sdate = 3) res <- SelectPeriodOnData(data = exp, dates = Dates, start = list(21, 4), end = list(21, 6)) expect_equal( dim(res), c(time = 52) ) }) ############################################## test_that("3. Decadal", { # -------- DECADAL ----------# # decadal: 1 sdate several consequtive years: dates <- seq(as.Date("01-01-2000", "%d-%m-%Y", tz = 'UTC'), as.Date("31-12-2005","%d-%m-%Y", tz = 'UTC'), "day") dim(dates) <- c(time = length(dates)) # No dims -> test .position output <- c( seq(as.Date("2000-02-01", "%Y-%m-%d"), as.Date("2000-02-10", "%Y-%m-%d"), 'day'), seq(as.Date("2001-02-01", "%Y-%m-%d"), as.Date("2001-02-10", "%Y-%m-%d"), 'day'), seq(as.Date("2002-02-01", "%Y-%m-%d"), as.Date("2002-02-10", "%Y-%m-%d"), 'day'), seq(as.Date("2003-02-01", "%Y-%m-%d"), as.Date("2003-02-10", "%Y-%m-%d"), 'day'), seq(as.Date("2004-02-01", "%Y-%m-%d"), as.Date("2004-02-10", "%Y-%m-%d"), 'day'), seq(as.Date("2005-02-01", "%Y-%m-%d"), as.Date("2005-02-10", "%Y-%m-%d"), 'day')) dim(output) <- c(time = 60) expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 2)), output ) data <- array(1:(length(dates)*3), c(memb = 1, time = length(dates), lon = 3)) expect_equal( SelectPeriodOnData(data, dates, start = list(1, 2), end = list(10, 2)), array(c(c(32:41, 398:407, 763:772, 1128:1137, 1493:1502, 1859:1868), c(32:41, 398:407, 763:772, 1128:1137, 1493:1502, 1859:1868) + 2192, c(32:41, 398:407, 763:772, 1128:1137, 1493:1502, 1859:1868) + 2 * 2192), c(memb = 1, time = 60, lon = 3)) ) output2 <- c( seq(as.Date("2000-02-01", "%Y-%m-%d"), as.Date("2000-04-10", "%Y-%m-%d"), 'day'), seq(as.Date("2001-02-01", "%Y-%m-%d"), as.Date("2001-04-10", "%Y-%m-%d"), 'day'), seq(as.Date("2002-02-01", "%Y-%m-%d"), as.Date("2002-04-10", "%Y-%m-%d"), 'day'), seq(as.Date("2003-02-01", "%Y-%m-%d"), as.Date("2003-04-10", "%Y-%m-%d"), 'day'), seq(as.Date("2004-02-01", "%Y-%m-%d"), as.Date("2004-04-10", "%Y-%m-%d"), 'day'), seq(as.Date("2005-02-01", "%Y-%m-%d"), as.Date("2005-04-10", "%Y-%m-%d"), 'day')) dim(output2) <- c(time = 416) expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 4)), output2 ) expect_equal( SelectPeriodOnData(data, dates, start = list(1, 2), end = list(10, 4)), array(c(c(32:101, 398:466, 763:831, 1128:1196, 1493:1562, 1859:1927), c(32:101, 398:466, 763:831, 1128:1196, 1493:1562, 1859:1927) + 2192, c(32:101, 398:466, 763:831, 1128:1196, 1493:1562, 1859:1927) + 2 * 2192), c(memb = 1, time = 416, lon = 3)) ) # 1 dim -> test Apply dim(dates) <- c(time = length(dates)) expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 2)), output ) # no need to check on Data, repited expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 4)), output2 ) # no need to check on Data, repited # decadal: 5 sdates several consequtive years dates <- rep(seq(as.Date("01-01-2000", "%d-%m-%Y", tz = 'UTC'), as.Date("31-12-2005","%d-%m-%Y", tz = 'UTC'), "day"), 5) dim(dates) <- c(time = 2192, sdate = 5) output3 <- rep(output, 5) dim(output3) <- c(time = 60, sdate = 5) expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 2)), output3) data <- array(1:(length(dates)*3), c(memb = 1, sdate = 5, time = length(dates)/5, lon = 3)) expect_equal( #To be extended for all sdate dimensions: SelectPeriodOnData(data, dates, start = list(1, 2), end = list(10, 2))[1,1, ,1], c(1:10 * 5 + 151, 1:10 * 5 + 1981, 1:10 * 5 + 3806, 1:10 * 5 + 5631, 1:10 * 5 + 7456, 1:10 * 5 + 9286) ) output4 <- rep(output2, 5) dim(output4) <- c(time = 416, sdate = 5) expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 4)), output4 ) expect_equal( #To be extended for all time dimensions: SelectPeriodOnData(data, dates, start = list(1, 2), end = list(10, 4))[1, ,1,1], 156:160 ) # Multiple dims: sdate, fyear, time dates <- CSTools::SplitDim(dates, indices = dates[,1], split_dim = 'time', freq = 'year') dates <- as.POSIXct(dates * 24 * 3600, origin = '1970-01-01', tz = 'UTC') output5 <- CSTools::SplitDim(output3, indices = output3[,1], split_dim = 'time' , freq = 'year') output5 <- as.POSIXct(output5 * 24 * 3600, origin = '1970-01-01', tz = 'UTC') expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 2)), output5 ) data <- array(1:(366*6*5*3), c(memb = 1, sdate = 5, year = 6, time = 366, lon = 3)) expect_equal( SelectPeriodOnData(data, dates, start = list(1, 2), end = list(10, 2)), InsertDim(Reorder(data[, , , 32:41, ], c('sdate', 'year', 'time', 'lon')), len = 1, pos = 1, name = 'memb') ) output6 <- CSTools::SplitDim(output4, indices = output4[,1], split_dim = 'time' , freq = 'year') output6 <- as.POSIXct(output6 * 24 * 3600, origin = '1970-01-01', tz = 'UTC') expect_equal( SelectPeriodOnDates(dates, start = list(1, 2), end = list(10, 4)), output6 ) # expect_equal( # to be fixed: # SelectPeriodOnData(data, dates, start = list(1, 2), end = list(10, 4)), # (931:935), outer(seq(931, 3001, 30), 0:4, '+') # InsertDim(Reorder(data[,,,32:41,], c('time', 'sdate', 'year', 'lon')), # len = 1, pos = 2, name = 'memb')) }) ############################################## test_that("4. Seasonal", { # 1 start month, select the required 'time' of each 'sdate' in-between the entire timeseries dates <- c(seq(as.Date("01-04-2000", format = "%d-%m-%Y"), as.Date("31-10-2000", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-04-2001", format = "%d-%m-%Y"), as.Date("31-10-2001", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-04-2002", format = "%d-%m-%Y"), as.Date("31-10-2002", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-04-2003", format = "%d-%m-%Y"), as.Date("31-10-2003", format = "%d-%m-%Y"), by = 'day')) dim(dates) <- c(time = 214, sdate = 4) output <- c(seq(as.Date("21-04-2000", format = "%d-%m-%Y"), as.Date("21-06-2000", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("21-04-2001", format = "%d-%m-%Y"), as.Date("21-06-2001", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("21-04-2002", format = "%d-%m-%Y"), as.Date("21-06-2002", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("21-04-2003", format = "%d-%m-%Y"), as.Date("21-06-2003", format = "%d-%m-%Y"), by = 'day')) dim(output) <- c(time = 62, sdate = 4) expect_equal( SelectPeriodOnDates(dates, start = list(21, 4), end = list(21, 6)), output ) # following the above case, and select the data data <- array(1:(5 * 4 * 214 * 2), c(memb = 5, sdate = 4, time = 214, lon = 2)) dim(dates) <- c(time = 214, sdate = 4) expect_equal( SelectPeriodOnData(data, dates, start = list(21, 4), end = list(21, 6))[1,1, ,1], data[1,1,21:82,1] ) # when selecting the days across two years dates <- seq(as.Date("2000-01-01", "%Y-%m-%d"), as.Date("2003-12-31", "%Y-%m-%d"), 'day') dim(dates) <- c(time = 1461) output1 <- c(seq(as.Date("01-01-2000", format = "%d-%m-%Y"), as.Date("31-01-2000", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-12-2000", format = "%d-%m-%Y"), as.Date("31-01-2001", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-12-2001", format = "%d-%m-%Y"), as.Date("31-01-2002", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-12-2002", format = "%d-%m-%Y"), as.Date("31-01-2003", format = "%d-%m-%Y"), by = 'day'), seq(as.Date("01-12-2003", format = "%d-%m-%Y"), as.Date("31-12-2003", format = "%d-%m-%Y"), by = 'day')) dim(output1) <- c(time = 31 * 8) expect_equal( SelectPeriodOnDates(dates, start = list(1, 12), end = list(31, 1)), output1 ) # following the above case, and select the data data1 <- array(1:(length(dates) * 2), c(memb = 1, time = length(dates), lon = 2)) expect_equal( SelectPeriodOnData(data1, dates, start = list(1, 12), end = list(31, 1)), array(c(c(1:31, 336:397, 701:762, 1066:1127, 1431:1461), c(1:31, 336:397, 701:762, 1066:1127, 1431:1461) + 1461), c(memb = 1, time = 31 * 8, lon = 2)) ) }) ############################################## test_that("5. Test sample data", { dates <- c(seq(as.POSIXct("10-03-2011", format = "%d-%m-%Y", tz = "UTC"), as.POSIXct("20-03-2011", format = "%d-%m-%Y", tz = "UTC"), by = 'day'), seq(as.POSIXct("10-03-2012", format = "%d-%m-%Y", tz = "UTC"), as.POSIXct("20-03-2012", format = "%d-%m-%Y", tz = "UTC"), by = 'day'), seq(as.POSIXct("10-03-2013", format = "%d-%m-%Y", tz = "UTC"), as.POSIXct("20-03-2013", format = "%d-%m-%Y", tz = "UTC"), by = 'day')) dim(dates) <- c(ftime = 11, sdate = 3) expect_equal( SelectPeriodOnDates(dates = lonlat_prec$attrs$Dates, start = list(10, 03), end = list(20, 03), time_dim = 'ftime'), dates ) dates_lonlat <- lonlat_prec_st$attrs$Dates dates_lonlat <- Reorder(dates_lonlat-12*3600, c(2,1)) expect_equal( SelectPeriodOnDates(dates = dates_lonlat, start = list(10, 03), end = list(20, 03), time_dim = 'ftime'), dates ) # test error dates <- CSTools::lonlat_prec_st$attrs$Dates out_sdates <- c(as.POSIXct("10-03-2011", format = "%d-%m-%Y", tz = "UTC"), as.POSIXct("10-03-2012", format = "%d-%m-%Y", tz = "UTC"), as.POSIXct("10-03-2013", format = "%d-%m-%Y", tz = "UTC")) dim(dates) <- c(a = 3, len = 31) expect_error( SelectPeriodOnDates(dates = dates, start = list(10, 03), end = list(20, 03), time_dim = 'ftime'), "Could not find dimension 'ftime' in 1th object provided in 'data'." ) dim(dates) <- c(sdate = 3, ftime = 31) expect_equal( SelectPeriodOnDates(dates = dates-12*3600, start = list(10, 03), end = list(20, 03), time_dim = 'ftime')[, 1], out_sdates ) dates <- Reorder(dates, c(2,1)) expect_equal( SelectPeriodOnDates(dates = dates-12*3600, start = list(10, 03), end = list(20, 03), time_dim = 'ftime')[1, ], out_sdates ) })