No space left on device
Hi,
I'm running a piControl experiment (a2y7) and had a No space left on device
in of my EARTHDIAGS jobs (chunk 11):
singularity exec ${CONTAINER} earthdiags -f ${conf_file} -lc DEBUG
+ singularity exec /esarchive/software/containers/earthdiagnostics/earthdiagnostics-3.4.0.sif earthdiags -f /gpfs/scratch/bsc32/bsc32436/a2y7/diags_a2y7_18500101_fc0_11.conf -lc DEBUG
^[[33mWARNING:^[[0m seccomp requested but not enabled, seccomp library is missing or too old
Traceback (most recent call last):
File "/opt/conda/bin/earthdiags", line 23, in <module>
main()
File "/opt/conda/bin/earthdiags", line 17, in main
if not EarthDiags.parse_args(sys.argv[1:]):
File "/opt/conda/lib/python3.8/site-packages/earthdiagnostics/earthdiags.py", line 178, in parse_args
result = diags.run()
File "/opt/conda/lib/python3.8/site-packages/earthdiagnostics/earthdiags.py", line 229, in run
self._prepare_mesh_files()
File "/opt/conda/lib/python3.8/site-packages/earthdiagnostics/earthdiags.py", line 438, in _prepare_mesh_files
self._prepare_mesh_using_scratch(
File "/opt/conda/lib/python3.8/site-packages/earthdiagnostics/earthdiags.py", line 473, in _prepare_mesh_using_scratch
if self._copy_file(
File "/opt/conda/lib/python3.8/site-packages/earthdiagnostics/earthdiags.py", line 518, in _copy_file
shutil.copyfile(source, destiny)
File "/opt/conda/lib/python3.8/shutil.py", line 272, in copyfile
_fastcopy_sendfile(fsrc, fdst)
File "/opt/conda/lib/python3.8/shutil.py", line 163, in _fastcopy_sendfile
raise err from None
File "/opt/conda/lib/python3.8/shutil.py", line 149, in _fastcopy_sendfile
sent = os.sendfile(outfd, infd, offset, blocksize)
OSError: [Errno 28] No space left on device: '/esarchive/autosubmit/con_files/mesh_mask_nemo.Ec3.2_O1L75.nc' -> 'cmip6/mesh_mask_nemo.Ec3.2_O1L75.nc'
SUCCESS=${?}
+ SUCCESS=1
rm -r ${TMPDIR}
Here's the log: /esnas/autosubmit/a2y7/tmp/LOG_a2y7/a2y7_18500101_fc0_11_EARTHDIAGS.20200626221630.err