context("Generic tests") test_that("Sanity checks", { expect_error( Composite(var = array(1:20, dim = c(2, 5, 2)), c(1, 1, 0)), "Temporal dimension of var is not equal to length of occ.") expect_warning( Composite(var = array(1:40, dim = c(2, 5, 4)), c(1, 2, 2, 2)), "Composite 1 has length 1 and pvalue is NA.") var <- array(rep(c(1, 3, 2, 1, 2), 8), dim = c(x = 2, y = 4, time = 5)) occ <- c(1, 2, 2, 2, 1) output <- c(x = 2, y = 4, composite = 2) #dim(asd$composite) expect_equal( dim(Composite(var, occ)$composite), output ) output <- c(1.5, 2.0, 2.5, 2.0) expect_equal( Composite(var, occ)$composite[1, , 1], output ) var <- array(rep(c(1, 3, 2, 1, 2, 2), 8), dim = c(x = 2, y = 4, time = 6)) occ <- c(1, 1, 2, 2, 3, 3) output <- matrix(c(1.5, 2.5, 1.5, 2.0, 2.0, 1.5, 1.5, 2.5), 2, 4) expect_equivalent( Composite(var, occ)$composite[, , 2], output ) expect_equal( dim(Composite(var, occ, K = 2)$composite), c(x = 2, y = 4, composite = 2) ) expect_equal( Composite(var, occ, K = 3), Composite(var, occ) ) expect_equal( Composite(var, occ, K = 4)$composite[1, 1, ], c(1.5, 1.5, 2.0, NA), tolerance = 0.01 ) })