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#### [Short examples] (short_examples)
#### [User guide](user_guide)
#### [Change log] (change_log)
\^Version name \^Date \^New features \| \|CFU\_tools \|????-??-?? \| \|
\|s2dverification 2.0 \|2013-08-02\| · Use of the standard R package
structure.\\\\ · Use of the google\'s R style guide.\\\\ · Functions
that involved RClim set of funcions have been kept apartfrom the package
(AnimVsLTime, BlueRed, PlotMap, ProjMap) as well as the authors.\\\\ ·
New functions have been added: Alpha, EnoNew, Filter, FitAcfCoef,
FitAutocor, GenSeries, Spectrum.\\\\ · Extended help. \|
\|\*s2dverification 2.1 \|2014-01-23 \| · Demo scripts
\'plot\_timeseries.R\' and \'plot\_maps.R\' available in the
\'inst/doc\' directory in the s2dverification repository.\\\\ ·
Documentation on how to specify the grids and masks to the function
Load() has been added to its help page, code and package manual. \|
\|\*s2dverification 2.1.1 \|2014-06-27 \| · Important bugfixes in
Clim(), and other bugfixes in Season(), Smoothing() and
Plot2VarsVsLTime().\\\\ · Bugs with the new version of CDO have been
fixed.\\\\ · Package is under licence GPLv3.\\\\ · Example datasets and
code for each function have been added. \| \|s2dverification 2.1.2
\|2014-07-09 \| · Bugfix in CDO calls. \| \|s2dverification 2.2.0
\|2014-12-16 \| · ACC provides confidence intervals obtained with
bootstrap method\\\\ · Function to plot ACC score\\\\ · Function to plot
variables on a polar stereographic projection\\\\ · Possibility of
loading observations only\\\\ · Possibility to load more ice
variables\\\\ · Adjustable significance level in the Corr function\\\\ ·
Adjustable number size in ColorBar \| \|s2dverification 2.3.0
\|2015-03-02 \| · Configuration file mechanism to specify new dataset or
variable paths, grids, etc.\\\\ · New parameters in Load() to specify
maximum and minimum values.\\\\ · New supported dataset formats. See
\'?Load\' in R after loading s2dverification for more information.\\\\ ·
More efficient memory usage in Load() and usage of multiple parallel
processes (faster).\\\\ · NetCDF4 + OPeNDAP support \| \|s2dverification
2.3.1 \|2015-03-09 \| · Loading observations only fixed\\\\ · Loading
only one leadtime fixed\\\\ · Loading a 2D variable when the first
observation was not stored in file-per-dataset format fixed\\\\ ·
Parameter \'ncores\' changed to \'nprocs\'\\\\ · Improvements in
configuration file mechanism and documentation \| \|s2dverification
2.3.2 \|2015-04-23 \| · New CRPS() function to compute the continuous
ranked probability score for ensemble forecasts.\\\\ · New ProbBins()
function to compute probabilistic information of a forecast relative to
a threshold or a quantile.\\\\ · Load() stops and warns if the masks
provided are not in the correct grid.\\\\ · Load() didn\'t apply, as
expected, the same masks in observations as in experiments when
possible. Now fixed.\\\\ · Enhancement in Clim() documentation.\\\\ ·
Enhancements in Load() and configuration file documentation.\\\\ ·
HadSLP dataset is now loadable \| \|\*s2dverification 2.4.0 \|2015-07-27
\| · Option to draw rectangles in PlotEquiMap()\\\\ · Motification of
Corr() to accomodate ranked correlation\\\\ · Added the possibility to
load
^Version name ^Date ^New features | |CFU_tools |????-??-?? | | |s2dverification 2.0 |2013-08-02| · Use of the standard R package structure.\\ · Use of the google's R style guide.\\ · Functions that involved RClim set of funcions have been kept apartfrom the package (AnimVsLTime, BlueRed, PlotMap, ProjMap) as well as the authors.\\ · New functions have been added: Alpha, EnoNew, Filter, FitAcfCoef, FitAutocor, GenSeries, Spectrum.\\ · Extended help. | |*s2dverification 2.1 |2014-01-23 | · Demo scripts 'plot_timeseries.R' and 'plot_maps.R' available in the 'inst/doc' directory in the s2dverification repository.\\ · Documentation on how to specify the grids and masks to the function Load() has been added to its help page, code and package manual. | |*s2dverification 2.1.1 |2014-06-27 | · Important bugfixes in Clim(), and other bugfixes in Season(), Smoothing() and Plot2VarsVsLTime().\\ · Bugs with the new version of CDO have been fixed.\\ · Package is under licence GPLv3.\\ · Example datasets and code for each function have been added. | |s2dverification 2.1.2 |2014-07-09 | · Bugfix in CDO calls. | |s2dverification 2.2.0 |2014-12-16 | · ACC provides confidence intervals obtained with bootstrap method\\ · Function to plot ACC score\\ · Function to plot variables on a polar stereographic projection\\ · Possibility of loading observations only\\ · Possibility to load more ice variables\\ · Adjustable significance level in the Corr function\\ · Adjustable number size in ColorBar | |s2dverification 2.3.0 |2015-03-02 | · Configuration file mechanism to specify new dataset or variable paths, grids, etc.\\ · New parameters in Load() to specify maximum and minimum values.\\ · New supported dataset formats. See '?Load' in R after loading s2dverification for more information.\\ · More efficient memory usage in Load() and usage of multiple parallel processes (faster).\\ · NetCDF4 + OPeNDAP support | |s2dverification 2.3.1 |2015-03-09 | · Loading observations only fixed\\ · Loading only one leadtime fixed\\ · Loading a 2D variable when the first observation was not stored in file-per-dataset format fixed\\ · Parameter 'ncores' changed to 'nprocs'\\ · Improvements in configuration file mechanism and documentation | |s2dverification 2.3.2 |2015-04-23 | · New CRPS() function to compute the continuous ranked probability score for ensemble forecasts.\\ · New ProbBins() function to compute probabilistic information of a forecast relative to a threshold or a quantile.\\ · Load() stops and warns if the masks provided are not in the correct grid.\\ · Load() didn't apply, as expected, the same masks in observations as in experiments when possible. Now fixed.\\ · Enhancement in Clim() documentation.\\ · Enhancements in Load() and configuration file documentation.\\ · HadSLP dataset is now loadable | |*s2dverification 2.4.0 |2015-07-27 | · Option to draw rectangles in PlotEquiMap()\\ · Motification of Corr() to accomodate ranked correlation\\ · Added the possibility to load the second set of HadCM3 decadal data (i3p1)\\ · Added functions to assist in manipulating the configuration file\\ · Improved examples that use extremely reduced experimental and observational datasets\\ · Uniformized documentation style\\ · Added possibility to configure dimension names to look for inside NetCDF files\\ · Added the possibility to load ESA observations from SMHI\\ · Fixed bug that happened in some cases when a common grid is not specified | |s2dverification 2.4.1 |2015-07-31 | · Bug that didn't allow to load experimental datasets with the month or day in the file paths now fixed | |s2dverification 2.4.2 |2015-08-13 | · Added 'methods' package as dependency so that Load() doesn't crash when run from Rscript | |s2dverification 2.4.3 |2015-09-03 | · Updated package title and description\\ · Fixed bug when loading observational global means\\ · NMME models now loadable | |s2dverification 2.4.4 |2015-10-01 | · Fixed bug when detecting NetCDF dimension names\\ · Updated configuration file to BSC repository\\ · eucleia observations now loadable | |s2dverification 2.4.5 |2015-10-19 | · Fixed bugs in plot_timeseries.R sample script\\ · Fixed wrong entries in BSC configuration file for some ice variables | |s2dverification 2.4.6 |2015-10-22 | · Updated plot_timeseries.R to new paths and to 'ncdf4' | |s2dverification 2.4.7 |2015-11-15 | · Updated plot_timeseries.R to new paths and to 'ncdf4'\\ · Improved performance when retrieving subsets of data (regions of earth or time periods)\\ · Added possibility to use Load() without a configuration file. See details on parameters 'exp' and 'obs' in ?Load\\ · Load() now returns plenty of metadata. Highlighted:\\ · Paths to all loaded files\\ · Paths to not found files\\ · Stamp with all the provided parameters to exactly reproduce any Load() call\\ · The name of the common grid (if any), following CDO's naming conventions\\ · Other enhancements in Load():\\ · Enhanced error handling and error messages\\ · Added "progress bar"\\ · Detects automatically grid of the files. No need to specify it\\ · Detects automatically if the requested variable is 2-dimensional or global mean. No need to specify it\\ · Possibility to load observations only, from a limited period of time only\\ · Possibility to load NetCDF files with disordered dimensions\\ · Removed system dependency of 's2dverification' to NCO and some GNU tools\\ · Simplified configuration file: removed lists of variables and reduced from 5 tables to 2, one for experimental datasets and one for observational datasets. You can convert old configuration files to the new format with the script in /shared/earth/software/scripts/convertConfig.R as follows:\\ /shared/earth/software/scripts/convertConfig.R /path/to/configfile.conf\\ · Fixed and updated the sample script plot_timeseries.R\\ · Fixed wrong entries in BSC configuration file for some ice variables| |s2dverification 2.4.8 |2015-11-19 | · List of loaded and not-loaded paths now displayed correctly | |s2dverification 2.4.9 |2015-11-19 | · Corrected bug when loading longitudes across the greenwich | |s2dverification 2.4.10 |2015-11-30 | · Corrected bugs when loading longitudes across the greenwich | |s2dverification 2.4.11 |2015-12-07 | · Load() can now load files with multiple grids defined inside | |*s2dverification 2.5.0 |2016-01-04 | · Fixed bugs when using masks in Load()\\ · Can now specify masks with paths to NetCDF files | |s2dverification 2.6.0 |2016-06-06 | · Updated configuration file.\\ · Functions to compute variability modes and project data on them: EOF() and ProjectField(), by Fabian, Virginie, Lauriane, Martin.\\ · Function to compute co·variability modes: SVD(), by Javi.\\ · Function to compute the NAO: NAO(), by Fabian, Virginie, Lauriane, Martin.\\ · Brier score/skill score accounting for small ensemble/start date sample size: UltimateBrier(), by Nico, Omar, Verónica, Chloé and Virginie.\\ · K-means spatial clustering: Cluster(), by Neven.\\ · Synthetic data generator: ToyModel(), by Omar.\\ · Tropical cyclone downscaling: StatSeasAtlHurr(), by Luis·Philippe.\\ · Function to composite fields: Composite(), by Neven.\\ · Function to generate map animations: AnimateMap(), by Virginie.\\ · Function to plot time series with box-and-whisker plots: PlotBoxWhisker(), by Fabian, Lauriane and Nico.\\ · Now possible to disable computation of confidence intervals or p-values in ACC(), Corr(), RatioRMS(), RatioSDRMS(), RMS(), RMSSS(), Spread() and Trend().\\ · Now possible to adjust confidence level in all functions that provide confidence intervals: ACC(), Corr(), RMS(), Spread() and Trend().\\ · Now possible to plot arrows in PlotEquiMap(), by Chloé.\\ · Now possible to save plots in multiple formats, to file or onscreen from all plot functions.\\ · Objects returned by Load() are now closer to the format in downscaleR. The initial and end date of each time step is provided now.\\ · Enhancements in Smoothing().\\ · Load() now stops if the tag $START_DATE$/$YEAR$+$MONTH$+$DAY$ is not in the path pattern of any of the experiments. | |s2dverification 2.6.1 | 2016-06-22 | · Fixed bug in Load() when loading more than 1 experimental data set or more than 1 observational data set. | |s2dverification 2.6.2 | 2016-06-27 | · Fixed bug in Load() when interpreting some path patterns. | |s2dverification 2.6.3 | 2016-06-28 | · Fixed bug in Load() when interpreting some path patterns.\\ · Fixed wrong entries in configuration file for some ice variables for 'nsidc-nasa' and 'hadisst_v1.1'. | |s2dverification 2.6.4 | 2016-07-01 | · Added functions for automatizing multi-pannel map plots: PlotMultiMap() and GenBrksCols(). | |s2dverification 2.6.5 | 2016-07-13 | · Added support in Load() for NetCDF files with 'add_offset' and 'scale_factor'.\\ · Updated default BSC configuration file with missing reconstruction data sets. | |s2dverification 2.7.0 | 2016-08-24 | · Enhanced PlotEquiMap() and PlotStereoMap() with lots of new options and fixed issues:\\ - Colour bar with triangle ends and lots of new features.\\ - Margins, labels, ticks, colour bar, titles now arranged properly.\\ - Now possibile to adjust colour and border of continents, size, colour and type of contour lines, size of labels, ticks and margins, colour and width of boxes, etc.\\ - Draw multiple superimposed dot/symbol layers.\\ - Draw boxes in PlotStereoMap().\\ - PlotStereoMap() with bounding circle.\\ · Added function PlotLayout() to automatically generate complex figure layouts and populate with plots from multi-dimensional arrays.\\ · Fixed and updated corrupted example scripts (required for new auto-ecearth releases to work).\\ · Added function Subset() to easily take chunks of data arrays.\\ · Fixed bug in Load() under some particular configurations.\\ · Enhanced margins in PlotAno().\\ · Updated sample data to be together with metadata as provided by Load().\\ · Updates and fixes in the BSC Load() configuration file. | |s2dverification 2.7.1 | 2016-09-07 | · Few enhancements in colour bar and map plot functions. | |s2dverification 2.7.2 | 2016-09-29 | · Enhancements to adjust size and resolution of plots.\\ · Enhancements in Load() to support some specific path patterns. Now possible to send additional variables to the configuration file, specific of each dataset in 'exp' or 'obs'.| |s2dverification 2.7.3 | 2016-11-09 | · Bugfixes in plot_timeseries.R example script.\\ · Small bugfix in Load().| |*s2dverification 2.8.0 | 2017-02-13 | · Changed licence from GPL-3 to LGPL-3.\\ · New veriApply compatible score functions (.BrierScore, .Corr, .RMS, .RMSSS, .RatioRMS, .RatioSDRMS and .Trend).\\ · New function CDORemap, to interpolate R arrays with CDO.\\ · New function ArrayToNetCDF, to save R arrays with metadata in NetCDF files.\\ · Enhanced plot_timeseries.R and plot_maps.R example scripts to work with file-per-chunk data, for auto-ecearth v3.2.1a.\\ · Added colour-blind colour bars for the map plots.\\ · Added warning in Load when extrapolating data.\\ · Bugfix in ProbBins when called with cross-validation.\\ · Enhanced documentation.\\ · Adapted UltimateBrier to SpecsVerification 0.5-0.\\ · Enhancements to adjust size and resolution in plotting functions.\\ · Solved PlotEquiMap bug when values equal to the lower limit.\\ · Bugfix in Ano.\\ · Bugfix in PlotVsLTime.\\ · Small update in the configuration file.| |s2dverification 2.8.1 | 2017-02-15 | · Bugfix in ColorBar. | *This release is also available on CRAN
*This release is also available on CRAN
#### [User manual] (user_manual)
The user manual can be downloaded from [CRAN]([pdf] (https://cran.r-project.org/web/packages/s2dverification/s2dverification.pdf)).
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