MODULE local_subs

 USE cmor_users_functions
!!$  PRIVATE
!!$  PUBLIC read_coords, read_time, read_3d_input_files, read_2d_input_files
CONTAINS

 SUBROUTINE read_coords(alats, alons, plevs, bnds_lat, bnds_lon)

   IMPLICIT NONE

   DOUBLE PRECISION, INTENT(OUT), DIMENSION(:) :: alats
   DOUBLE PRECISION, INTENT(OUT), DIMENSION(:) :: alons
   DOUBLE PRECISION, INTENT(OUT), DIMENSION(:) :: plevs
   DOUBLE PRECISION, INTENT(OUT), DIMENSION(:,:) :: bnds_lat
   DOUBLE PRECISION, INTENT(OUT), DIMENSION(:,:) :: bnds_lon

   INTEGER :: i

   DO i = 1, SIZE(alons)
      alons(i) = (i-1)*360./SIZE(alons)
      bnds_lon(1,i) = (i - 1.5)*360./SIZE(alons)
      bnds_lon(2,i) = (i - 0.5)*360./SIZE(alons)
   END DO

   DO i = 1, SIZE(alats)
      alats(i) = (size(alats)+1-i)*10
      bnds_lat(1,i) = (size(alats)+1-i)*10 + 5.
      bnds_lat(2,i) = (size(alats)+1-i)*10 - 5.
   END DO

   DO i = 1, SIZE(plevs)
      plevs(i) = i*1.0e4
   END DO
      plevs = (/100000., 92500., 85000., 70000.,&
       60000., 50000., 40000., 30000., 25000., 20000.,&
       15000., 10000., 7000., 5000., 3000., 2000., 1000. /)

   RETURN
 END SUBROUTINE read_coords

 SUBROUTINE read_time(it, time, time_bnds)

   IMPLICIT NONE

   INTEGER, INTENT(IN) :: it
   DOUBLE PRECISION, INTENT(OUT) :: time
   DOUBLE PRECISION, INTENT(OUT), DIMENSION(2,1) :: time_bnds

   time = (it-0.5)*30.
   time_bnds(1,1) = (it-1)*30.
   time_bnds(2,1) = it*30.

   RETURN
 END SUBROUTINE read_time

include "reader_2D_3D.f90"

END MODULE local_subs

program testing
 use cmor_users_functions
 use local_subs
   implicit none
   integer error_flag
 INTEGER, PARAMETER :: ntimes = 2    ! number of time samples to process
 INTEGER, PARAMETER :: lon = 4       ! number of longitude grid cells  
 INTEGER, PARAMETER :: lat = 3       ! number of latitude grid cells
 INTEGER, PARAMETER :: lev = 5       ! number of standard pressure levels
 INTEGER, PARAMETER :: lev2 = 17       ! number of standard pressure levels
!  INTEGER, PARAMETER :: n2d = 4       ! number of IPCC Table A1a fields to be
 INTEGER, PARAMETER :: n2d = 1       ! number of IPCC Table A1a fields to be
                                     !     output.
 INTEGER, PARAMETER :: n3d = 3       ! number of IPCC Table A1c fields to 
                                     !     be output.  
                               ! My variable names for IPCC Table A1c fields
 CHARACTER (LEN=5), DIMENSION(n3d) :: &
                                varin3d=(/'CLOUD', 'U    ', 'T    '/)

                               ! Units appropriate to my data
 CHARACTER (LEN=6), DIMENSION(n3d) :: &
                                 units3d=(/ '%     ', 'm s-1 ',   'K     ' /)

                    ! Corresponding IPCC Table A1c entry (variable name) 
 CHARACTER (LEN=2), DIMENSION(n3d) :: entry3d = (/ 'cl', 'ua', 'ta' /)

                               ! My variable names for IPCC Table A1a fields
 CHARACTER (LEN=8), DIMENSION(n2d) :: &
!                  varin2d=(/ 'LATENT  ', 'TSURF   ', 'SOIL_WET', 'PSURF   ' /)
                 varin2d=(/ 'SFTLF  ' /)

                               ! Units appropriate to my data
  CHARACTER (LEN=6), DIMENSION(n2d) :: &
!                          units2d=(/ 'W m-2 ', 'K     ', 'kg m-2', 'Pa    ' /)
                         units2d=(/ '% ' /)

  CHARACTER (LEN=4), DIMENSION(n2d) :: &
!                      positive2d= (/  'down',  '    ', '    ', '    '  /)
                     positive2d= (/  '    '  /)

                    ! Corresponding IPCC Table A1a entry (variable name) 
 CHARACTER (LEN=5), DIMENSION(n2d) :: &
!                        entry2d = (/ 'hfls ', 'tas  ', 'mrsos', 'ps   ' /)
                       entry2d = (/ 'sftlf ' /)

!  uninitialized variables used in communicating with CMOR:
!  ---------------------------------------------------------

 INTEGER :: znondim_id, zfactor_id
 INTEGER, DIMENSION(n2d) :: var2d_ids
 INTEGER, DIMENSION(n3d) :: var3d_ids
 REAL, DIMENSION(lon,lat) :: data2d
 real, DIMENSION(lon*lat) ::  data1dtest
 REAL, DIMENSION(lon,lat,lev2) :: data3d
 DOUBLE PRECISION, DIMENSION(lat) :: alats
 DOUBLE PRECISION, DIMENSION(lon) :: alons
 DOUBLE PRECISION, DIMENSION(lev2) :: plevs
 DOUBLE PRECISION, DIMENSION(1) :: time
 DOUBLE PRECISION, DIMENSION(2,1):: bnds_time
 DOUBLE PRECISION, DIMENSION(2,lat) :: bnds_lat
 DOUBLE PRECISION, DIMENSION(2,lon) :: bnds_lon
 DOUBLE PRECISION, DIMENSION(lev) :: zlevs
 DOUBLE PRECISION, DIMENSION(lev+1) :: zlev_bnds
 real, DIMENSION(lev) :: a_coeff
 DOUBLE PRECISION, DIMENSION(lev) :: b_coeff
 DOUBLE PRECISION :: p0
 DOUBLE PRECISION :: p0array(1)
 real, DIMENSION(lev+1) :: a_coeff_bnds
 DOUBLE PRECISION, DIMENSION(lev+1) :: b_coeff_bnds
 INTEGER :: ilon, ilat, ipres, ilev, itim,i,ilon2,ilat2
 real :: missing
 double precision bt

 !  Other variables:
 !  ---------------------

 INTEGER :: it, m, j,k


 bt=0.
! format classic(NETCDF-3)
!  j = CMOR_REPLACE_3
! format NETCDF-4
 j = CMOR_REPLACE
 k = CMOR_EXIT_ON_MAJOR
 error_flag = cmor_setup(inpath='Test', netcdf_file_action=j,&
      exit_control=k)
 print*,'Test code: done'
 error_flag = cmor_dataset(                                   &
      outpath='Test',                                         &
      experiment_id='lgm',           &
      institution=                                            &
      'GICC (Generic International Climate Center, ' //       &
      'Geneva, Switzerland)',                                 &
      source='GICCM1 (2002): ' //                             &
      'atmosphere:  GICAM3 (gicam_0_brnchT_itea_2, T63L32); '// &
      'ocean: MOM (mom3_ver_3.5.2, 2x3L15); '             //  &
      'sea ice: GISIM4; land: GILSM2.5',                      &
      calendar='360_day',                                      &
      realization=1,                                          &
      history='Output from archive/giccm_03_std_2xCO2_2256.', &
      comment='Equilibrium reached after 30-year spin-up ' // &
      'after which data were output starting with nominal '// &
      'date of January 2030',                                 &
      references='Model described by Koder and Tolkien ' //   &
      '(J. Geophys. Res., 2001, 576-591).  Also '        //   &
      'see http://www.GICC.su/giccm/doc/index.html '     //   &
      ' 2XCO2 simulation described in Dorkey et al. '    //   &
      '(Clim. Dyn., 2003, 323-357.)', model_id="GICCM1", &
      forcing='TO',contact="Barry Bonds",institute_id="PCMDI",&
       parent_experiment_rip="N/A",parent_experiment_id="N/A",branch_time=bt)
  
 print*, 'Test code: done 2 lalala'

 call read_coords(alats, alons, plevs, bnds_lat, bnds_lon)


 print*, 'Test code: ok calling axis stuff lat',alats
 ilat = cmor_axis(  &
      table='Tables/CMIP5_Amon',    &
      table_entry='latitude',       &
      units='degrees_north',        &  
      length=lat,                   &
      coord_vals=alats,             & 
      cell_bounds=bnds_lat)        

 print*, 'Test code: ok calling axis stuff lon',ilat
 ilon = cmor_axis(  &
      table='Tables/CMIP5_Amon',    &
      table_entry='longitude',      &
      length=lon,                   &
      units='degrees_east',         &
      coord_vals=alons,             &
      cell_bounds=bnds_lon)      

 ilat2 = cmor_axis(  &
      table='Tables/CMIP5_fx',    &
      table_entry='latitude',       &
      units='degrees_north',        &  
      length=lat,                   &
      coord_vals=alats,             & 
      cell_bounds=bnds_lat)        

 print*, 'Test code: ok calling axis stuff lon',ilat
 ilon2 = cmor_axis(  &
      table='Tables/CMIP5_fx',    &
      table_entry='longitude',      &
      length=lon,                   &
      units='degrees_east',         &
      coord_vals=alons,             &
      cell_bounds=bnds_lon)      

 print*, 'Test code: ok calling axis stuff pressure',ilon
 ipres = cmor_axis(  &
      table='Tables/CMIP5_Amon',    &
      table_entry='plevs',       &
      units='Pa',                   &
      length=lev2,                   &
      coord_vals=plevs)

 !   note that the time axis is defined next, but the time coordinate 
 !   values and bounds will be passed to cmor through function 
 !   cmor_write (later, below).

 print*, 'Test code: ok calling axis stuff time',ipres,ntimes
 itim = cmor_axis(  &
      table='Tables/CMIP5_Amon',    &
      table_entry='time',           &
      units='days since 2030-1-1',  &
      length=ntimes,                &
      interval='30 days')

 !  define model eta levels (although these must be provided, they will
 !    actually be replaced by a+b before writing the netCDF file)
 zlevs = (/ 0.1, 0.3, 0.55, 0.7, 0.9 /)
 zlev_bnds=(/ 0.,.2, .42, .62, .8, 1. /)

 print*, 'Test code: ok calling axis stuff lev2',itim
 ilev = cmor_axis(  &
      table='Tables/CMIP5_Amon',    &
      table_entry='standard_hybrid_sigma',       &
      units="1",   &
      length=lev,                   &
      coord_vals=zlevs,             &
      cell_bounds=zlev_bnds)

 print*, 'Test code: ok called stuff lev2',ilev
 !   define z-factors needed to transform from model level to pressure
 p0 = 1.e5
 p0array(1)=p0
 a_coeff = (/ 0.1, 0.2, 0.3, 0.22, 0.1 /)
 b_coeff = (/ 0.0, 0.1, 0.2, 0.5, 0.8 /)

 a_coeff_bnds=(/0.,.15, .25, .25, .16, 0./)
 b_coeff_bnds=(/0.,.05, .15, .35, .65, 1./)

 print*, 'Test code: zfactor p0'
 error_flag = cmor_zfactor(  &
      zaxis_id=ilev,                      &
      zfactor_name='p0',                  &
      units='Pa',                         &
      zfactor_values = p0)

 print*, 'Test code: result',error_flag
 print*, 'Test code: zfactor b'
 error_flag = cmor_zfactor(  &
      zaxis_id=ilev,                       & 
      zfactor_name='b',                    &
      axis_ids= (/ ilev /),                &
      zfactor_values = b_coeff,            &
      zfactor_bounds = b_coeff_bnds  )

 print*, 'Test code: result',error_flag
 print*, 'Test code: zfactor a'
 error_flag = cmor_zfactor(  &
      zaxis_id=ilev,                       &
      zfactor_name='a',                    &
      axis_ids= (/ ilev /),                &
      zfactor_values = a_coeff,            &
      zfactor_bounds = a_coeff_bnds )

 print*, 'Test code: result',error_flag
 print*, 'Test code: zfactor ps'
 zfactor_id = cmor_zfactor(  &
      zaxis_id=ilev,                         &
      zfactor_name='ps',                     &
      axis_ids=(/ ilon, ilat, itim /),       &
      units='Pa' )

 print*, 'Test code: result',zfactor_id
 print*, 'Test code: var3d'
 missing = 1.e28
 var3d_ids(1) = cmor_variable(    &
      table='Tables/CMIP5_Amon',  &
      table_entry=entry3d(1),     &
      units=units3d(1),           &
      axis_ids=(/ ilon, ilat, ilev, itim /),  &
      missing_value=missing, &
      original_name=varin3d(1))

 !  Define variables appearing in IPCC table A1c that are a function of pressure
 !         (3-d variables)

 print*, 'Test code: result',var3d_ids(1)
 DO m=2,n3d
    print*, 'Test code: var: ',entry3d(m)
    var3d_ids(m) = cmor_variable(    &
         table='Tables/CMIP5_Amon',  &
         table_entry=entry3d(m),     &
         units=units3d(m),           &
         axis_ids=(/ ilon, ilat, ipres, itim /), &
         missing_value=missing,       &
         original_name=varin3d(m))
    print*, 'Test code: result',var3d_ids(m)
 ENDDO


 !  Define variables appearing in IPCC table A1a (2-d variables)

 DO m=1,n2d
    print*, 'Test code: var: ',entry2d(m)
    var2d_ids(m) = cmor_variable(    &
         table='Tables/CMIP5_fx',  &
         table_entry=entry2d(m),     & 
         units=units2d(m),           & 
    !     axis_ids=(/ ilon, ilat, itim /), &
         axis_ids=(/ ilon2, ilat2 /), &
         missing_value=missing,       &
         positive=positive2d(m),     &
         original_name=varin2d(m))   
    print*, 'Test code: result',var2d_ids(m)
 ENDDO

 PRINT*, 'Test code:  '
 PRINT*, 'Test code: completed everything up to writing output fields '
 PRINT*, 'Test code:  '
 time_loop: DO it=1, ntimes

    ! In the following loops over the 3d and 2d fields, the user-written    
    ! subroutines (read_3d_input_files and read_2d_input_files) retrieve 
    ! the requested IPCC table A1c and table A1a fields and store them in 
    ! data3d and data2d, respectively.  In addition a user-written code 
    ! (read_time) retrieves the time and time-bounds associated with the 
    ! time sample (in units of 'days since 1970-1-1', consistent with the 
    ! axis definitions above).  The bounds are set to the beginning and 
    ! the end of the month retrieved, indicating the averaging period.

    ! The user must write a code to obtain the times and time-bounds for
    !   the time slice.  The following line is simply a place-holder for
    !   the user's code, which should replace it.
   call read_time(it, time(1), bnds_time)
   call read_3d_input_files(it, varin3d(1), data3d)

   error_flag = cmor_write(                                  &
        var_id        = var3d_ids(1),                        &
        data          = data3d,                              &
        ntimes_passed = 1,                                   &
        time_vals     = time,                                &
        time_bnds     = bnds_time   )

   call read_2d_input_files(it, 'PSURF', data2d)                  

   error_flag = cmor_write(                                  &
        var_id        = zfactor_id,                          &
        data          = data2d,                              &
        ntimes_passed = 1,                                   &
        time_vals     = time,                                &
        time_bnds     = bnds_time,                           &
        store_with    = var3d_ids(1) )
   
   print*, 'Test code: result',error_flag
  ! Cycle through the 3-d fields (stored on pressure levels), 
   ! and retrieve the requested variable and append each to the 
   ! appropriate netCDF file.

   DO m=2,n3d

       ! The user must write the code that fills the arrays of data
       ! that will be passed to CMOR.  The following line is simply a
       ! a place-holder for the user's code, which should replace it.

       call read_3d_input_files(it, varin3d(m), data3d)

       ! append a single time sample of data for a single field to 
       ! the appropriate netCDF file.
       print*, ' Writing 3D variable:',var3d_ids(m)
       error_flag = cmor_write(                                  &
            var_id        = var3d_ids(m),                        &
            data          = data3d,                              &
            ntimes_passed = 1,                                   &
            time_vals     = time,                                &
            time_bnds     = bnds_time  )

       IF (error_flag < 0) THEN
          ! write diagnostic messages to standard output device
          write(*,*) 'Test code:  Error encountered writing IPCC Table A1c ' &
               // 'field ', entry3d(m), ', which I call ', varin3d(m)
          write(*,*) 'Test code:  Was processing time sample: ', time

       END IF

    END DO
!!$     
!!$     ! Cycle through the 2-d fields, retrieve the requested variable and 
!!$     ! append each to the appropriate netCDF file.
!!$     
    DO m=1,n2d

       ! The user must write the code that fills the arrays of data
       ! that will be passed to CMOR.  The following line is simply a
       ! a place-holder for the user's code, which should replace it.

       print*, 'varinf',varin2d(m)
       call read_2d_input_files(it, varin2d(m), data2d)                  

       ! append a single time sample of data for a single field to 
       ! the appropriate netCDF file.
       print*, 'Writing var 2d:',var2d_ids(m),entry2d(m)
       error_flag = cmor_write(                                  &
            var_id        = var2d_ids(m),                        &
            data          = data2d,                              &
            ntimes_passed = 0 )
            !ntimes_passed = 1,                                   &
            !time_vals     = time,                                &
            !time_bnds     = bnds_time  )

      IF (error_flag < 0) THEN
          ! write diagnostic messages to standard output device
          write(*,*) 'Test code:  Error encountered writing IPCC Table A1a ' &
               // 'field ', entry2d(m), ', which I call ', varin2d(m)
          write(*,*) 'Test code:  Was processing time sample: ', time 

       END IF

    END DO

 END DO time_loop

 error_flag = cmor_close()

end program testing
