From b8f4c82c1bc403b35a397f5b9ec1d87866449194 Mon Sep 17 00:00:00 2001 From: nperez Date: Fri, 22 Oct 2021 15:27:51 +0200 Subject: [PATCH 1/2] Improved FAQ --- inst/doc/faq.md | 1 + 1 file changed, 1 insertion(+) diff --git a/inst/doc/faq.md b/inst/doc/faq.md index fbf2efb..02e8112 100644 --- a/inst/doc/faq.md +++ b/inst/doc/faq.md @@ -1022,6 +1022,7 @@ to power9, you should put the files in Power9 instead of local workstation.) have one, go to [usecase.md](https://earth.bsc.es/gitlab/es/startR/tree/develop-FAQcluster/inst/doc/usecase) to find one!). If it fails, it means that your connection to machine or the ecFlow setting has some problem. +- **Check 'return_vars' parameter in Start.** If the variable (usually set in 'var') is requested in 'return_vars' parameter of ´Start()´, the execution in a HPC cluster may fail. ### 5. Errors related to wrong file formatting -- GitLab From f7ea9b0aeba413199b70aad91da578956395921a Mon Sep 17 00:00:00 2001 From: nperez Date: Fri, 22 Oct 2021 16:23:18 +0200 Subject: [PATCH 2/2] fixing the faq title --- inst/doc/faq.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/inst/doc/faq.md b/inst/doc/faq.md index 02e8112..89e935e 100644 --- a/inst/doc/faq.md +++ b/inst/doc/faq.md @@ -34,7 +34,7 @@ This document intends to be the first reference for any doubts that you may have 1. [No space left on device](#1-no-space-left-on-device) 2. [ecFlow UI remains blue and does not update status](#2-ecflow-ui-remains-blue-and-does-not-update-status) 3. [Compute() successfully but then killed on R session](#3-compute-successfully-but-then-killed-on-r-session) - 4. [My jobs work well in workstation and fatnodes but not on Power9 (or vice versa)](#4-my-jobs-work-well-in-workstation-and-fatnodes-but-not-on-power9-or-vice-versa) + 4. [My jobs work well in workstation and fatnodes but not on Power9/Nord3 (or vice versa)](#4-my-jobs-work-well-in-workstation-and-fatnodes-but-not-on-power9nord3-or-vice-versa) 5. [Errors related to wrong file formatting](#5-errors-related-to-wrong-file-formatting) 6. [Errors using a new cluster (setting Nord3)](#6-errors-using-a-new-cluster-setting-nord3) 7. [Start() fails retrieving data](#7-start-fails-retrieving-data) @@ -1001,7 +1001,7 @@ When Compute() on HPCs, the machines are able to process data which are much lar Further explanation: though the complete output (i.e., merging all the chunks into one returned array) cannot be sent back to workstation, but the chunking results (.Rds file) are completed and saved in the directory '/STARTR_CHUNKING_'. If you still want to use the chunking results, you can find them there. -### 4. My jobs work well in workstation and fatnodes but not on Power9 (or vice versa) +### 4. My jobs work well in workstation and fatnodes but not on Power9/Nord3 (or vice versa) There are several possible reasons for this situation. Here we list some of them, and please let us know if you find any other reason not listed here yet. - **R module or package version difference.** Sometimes, the versions among these -- GitLab