diff --git a/inst/doc/practical_guide.md b/inst/doc/practical_guide.md index 0ae2806ddee86e09ba2525fa18dea0e0cb30fdd7..d476652420df126e1893af3191ea63de2137bab8 100644 --- a/inst/doc/practical_guide.md +++ b/inst/doc/practical_guide.md @@ -87,7 +87,6 @@ res <- Compute(wf, cluster = list(queue_host = 'p9login1.bsc.es', queue_type = 'slurm', temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.5/', r_module = 'R/3.5.0-foss-2018b', job_wallclock = '00:10:00', cores_per_job = 4, @@ -570,7 +569,6 @@ res <- Compute(wf, cluster = list(queue_host = 'p9login1.bsc.es', queue_type = 'slurm', temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.5/', r_module = 'R/3.5.0-foss-2018b', cores_per_job = 4, job_wallclock = '00:10:00', @@ -703,7 +701,6 @@ res <- Compute(wf, cluster = list(queue_host = 'p9login1.bsc.es', queue_type = 'slurm', temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.5/', r_module = 'R/3.5.0-foss-2018b', cores_per_job = 4, job_wallclock = '00:10:00', @@ -951,7 +948,6 @@ res <- Compute(wf, queue_type = 'slurm', data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/', temp_dir = '/gpfs/scratch/pr1efe00/pr1efe03/startR_tests/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.4/', r_module = 'R/3.4.0', cores_per_job = 2, job_wallclock = '00:10:00', @@ -1027,7 +1023,6 @@ r <- Compute(wf, cluster = list(queue_host = 'p9login1.bsc.es', queue_type = 'slurm', temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.5/', r_module = 'R/3.5.0-foss-2018b', cores_per_job = 4, job_wallclock = '00:10:00', @@ -1056,7 +1051,6 @@ cluster = list(queue_host = 'mn2.bsc.es', queue_type = 'slurm', data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/', temp_dir = '/gpfs/scratch/pr1efe00/pr1efe03/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.4/', r_module = 'R/3.4.0', cores_per_job = 2, job_wallclock = '00:10:00', @@ -1075,7 +1069,6 @@ cluster = list(queue_host = 'nord1.bsc.es', queue_type = 'lsf', data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/', temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.3/', init_commands = list('module load intel/16.0.1'), r_module = 'R/3.3.0', cores_per_job = 2, @@ -1095,7 +1088,6 @@ cluster = list(queue_host = 'mt1.bsc.es', queue_type = 'slurm', data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/', temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/', - lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.3/', r_module = 'R/3.3.3', cores_per_job = 2, job_wallclock = '00:10:00',