diff --git a/inst/doc/faq.md b/inst/doc/faq.md index a965827cc894c4a0463d1d8981484c43bcdef9cc..6f1d1ac775e4d849af2b0e7ce0a82c8c162be421 100644 --- a/inst/doc/faq.md +++ b/inst/doc/faq.md @@ -29,7 +29,7 @@ This document intends to be the first reference for any doubts that you may have 3. [Compute() successfully but then killed on R session](#3-compute-successfully-but-then-killed-on-r-session) 4. [My jobs work well in workstation and fatnodes but not on Power9 (or vice versa)](#4-my-jobs-work-well-in-workstation-and-fatnodes-but-not-on-power9-or-vice-versa) 5. [Errors related to wrong file formatting](#5-errors-related-to-wrong-file-formatting) - + 6. [Errors using a new cluster (setting Nord3)](#6-errors-using-a-new-cluster-setting-nord3) ## 1. How to @@ -750,3 +750,47 @@ Aborting in file clipping.c, line 1295 ... Error in s2dverification::CDORemap(data_array, lons, lats, ...) : CDO remap failed. ``` + + +### 6. Errors using a new cluster (setting Nord3) + +When using a new cluster, some errors could happen. Here, there are some behaviours detected from issue #64. + +- whether running Compute(), request password: + +``` +Password: +``` + +Check that the host name for the cluster has been include in the ´.ssh/config´. +Check also that the passwordless access has been properly set up. You can check that you can access the cluster without providing the password by using the host name ´ssh nord3´ (see more infor in the [**Practical guide**](inst/doc/practical_guide.md)). + +- alias may not be available, such as 'esnas' for 'esarchive' + +In this case, the error ´No data files found for any of the specified datasets.´ will be returned. + +- repetitive prints of modules loading: + +``` +load UDUNITS/2.1.24 (PATH) +load NETCDF/4.1.3 (PATH, LD_LIBRARY_PATH, NETCDF) +load R/2.15.2 (PATH, LD_LIBRARY_PATH) +``` + +The .bashrc in your Nord 3 home must be edit with the information from [BSC ES wiki](https://earth.bsc.es/wiki/doku.php?id=computing:nord3) to load correct modules. However, if you add a line before those, the result will be the one above. + +Check your .bashrc to avoid loading modules before define the department ones. + + +- R versions: Workstation version versus remote cluster version + +Some functions depends on the R version used and they should be compatible in workstation and in the remote cluster. If the error: + +``` +cannot read workspace version 3 written by R 3.6.2; need R 3.5.0 or newer +``` + +change the R version used in your workstation to one newer. + + +