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working_groups:ukurbangroup [2022/09/19 11:24] acriado |
working_groups:ukurbangroup [2022/09/19 11:34] acriado |
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module load RStudio/ | module load RStudio/ | ||
module load R/ | module load R/ | ||
- | module load GDAL/ | ||
- | module load PROJ/ | ||
- | module load GEOS/ | ||
- | module load HDF5/ | ||
rstudio & | rstudio & | ||
</ | </ | ||
Line 38: | Line 34: | ||
</ | </ | ||
| | ||
+ | To launch it in the workstation, | ||
+ | |||
+ | * Open your bashrc: | ||
+ | <code bash> | ||
+ | vi ~/.bashrc | ||
+ | </ | ||
+ | |||
+ | * Save the modules: | ||
+ | <code bash> | ||
+ | module load RStudio/ | ||
+ | module load R/ | ||
+ | </ | ||
+ | |||
+ | * Save your bashrc: | ||
+ | <code bash> | ||
+ | source ~/.bashrc | ||
+ | </ | ||
+ | * Launch the script: | ||
+ | <code bash> | ||
+ | Rscript [script] | ||
+ | </ | ||
===== First Steps : understanding the scripts ===== | ===== First Steps : understanding the scripts ===== | ||
Line 134: | Line 151: | ||
* //#SBATCH --time=48: | * //#SBATCH --time=48: | ||
* //#SBATCH --time=01: | * //#SBATCH --time=01: | ||
+ | |||
+ | The user has to charge the model in the //bashrc// (referred to the machine): | ||
+ | * Open your bashrc: | ||
+ | <code bash> | ||
+ | vi ~/.bashrc | ||
+ | </ | ||
+ | |||
+ | * Save the modules: | ||
+ | <code bash> | ||
+ | module load R | ||
+ | </ | ||
+ | |||
+ | * Save your bashrc: | ||
+ | <code bash> | ||
+ | source ~/.bashrc | ||
+ | </ | ||
+ | |||
To submit the job regarding this methodology, | To submit the job regarding this methodology, |