User Tools

Site Tools


tools:rtools

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
tools:rtools [2026/02/06 08:42]
vagudets [2026]
tools:rtools [2026/04/14 07:01] (current)
vagudets [Environment Modules]
Line 11: Line 11:
 For example, to load CDO and R in the hub, you should load the corresponding modules with the 'module load' command: For example, to load CDO and R in the hub, you should load the corresponding modules with the 'module load' command:
     module load CDO/2.4.4-gompi-2023b     module load CDO/2.4.4-gompi-2023b
-    module load R/4.4.1-gfbf-2023b 
     module load R-bundle-CRAN/2024.06-foss-2023b     module load R-bundle-CRAN/2024.06-foss-2023b
  
 The currently maintained R module versions are: The currently maintained R module versions are:
  
-  * BSC-ES Hub: R/4.4.1-gfbf-2023b (+ R-bundle-CRAN/2024.06-foss-2023b for most CRAN Packages; and R-bundle-Bioconductor/3.19-foss-2023b-R-4.4.1 for Bioconductor packages. See: [[https://earth.bsc.es/wiki/doku.php?id=computing:bsceshub | Computing - Bsceshub]]) +  * BSC-ES Hub: R-bundle-CRAN/2024.06-foss-2023b for most CRAN Packages; and R-bundle-Bioconductor/3.19-foss-2023b-R-4.4.1 for Bioconductor packages. (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:bsceshub | Computing - Bsceshub]] 
-  * Nord3v2: R/4.1.2-foss-2019b (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:nord3-v2|Computing Nord3v2]]) +  * Nord4: R-bundle-CRAN/2023.12-foss-2020b for most CRAN Packages; and R-bundle-Bioconductor/3.18-foss-2020b-R-4.3.3 for Bioconductor packages. (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:nord4|Computing - Nord4]]) 
-  * CTE-AMD: R/4.1.2-foss-2019b (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:amd|Computing AMD]]) +  * MN5: R/4.3.3-gfbf-2023b (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:mn5|Computing - MN5]]
-  * Nord4: R/4.1.2-foss-2019b (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:nord4|Computing - Nord4]]) +
-  * BSC-ES Hub (deprecated): R/4.2.1-foss-2021b (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:bsceshub|Computing - Bsceshub (Testing phase)]]+
-  * Workstations (deprecated): R/4.1.2-foss-2015a-bare (See: [[https://earth.bsc.es/wiki/doku.php?id=computing:workstations| Computing - Workstations]])+
  
 Check the wiki page for each machine to see if you need to follow any additional steps to be able to load the correct modules. Check the wiki page for each machine to see if you need to follow any additional steps to be able to load the correct modules.
tools/rtools.txt · Last modified: 2026/04/14 07:01 by vagudets