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working_groups:ukurbangroup [2022/09/19 11:28] acriado |
working_groups:ukurbangroup [2022/09/23 09:10] (current) acriado |
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module load RStudio/ | module load RStudio/ | ||
module load R/ | module load R/ | ||
- | module load GDAL/ | ||
- | module load PROJ/ | ||
- | module load GEOS/ | ||
- | module load HDF5/ | ||
rstudio & | rstudio & | ||
</ | </ | ||
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To launch it in the workstation, | To launch it in the workstation, | ||
- | * <code bash> | + | * Open your bashrc: |
+ | <code bash> | ||
vi ~/.bashrc | vi ~/.bashrc | ||
- | </ | + | </ |
- | Open the Rstudio application: | + | |
+ | * Save the modules: | ||
<code bash> | <code bash> | ||
- | * source ~/.bashrc | + | module load RStudio/1.1.463-foss-2015a |
+ | module load R/ | ||
</ | </ | ||
- | Open the Rstudio application: | + | |
+ | * Save your bashrc: | ||
<code bash> | <code bash> | ||
- | * Launch the script : | + | source ~/.bashrc |
</ | </ | ||
- | Rscript [script] | + | * Launch the script: |
<code bash> | <code bash> | ||
+ | Rscript [script] | ||
+ | </ | ||
===== First Steps : understanding the scripts ===== | ===== First Steps : understanding the scripts ===== | ||
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Now we are going to see what is and the implication of each of the items that have to be filled in the configuration file: | Now we are going to see what is and the implication of each of the items that have to be filled in the configuration file: | ||
- | * **//UniversalKriging_path//** : (a folder path) \\ this will be the main folder, the one that is created after copying | + | * **//repository_path//** : (a folder path) \\ this would be the folder |
- | * **// | + | |
+ | * **// | ||
+ | |||
* **// | * **// | ||
* **// | * **// | ||
- | | + | |
+ | * **// | ||
+ | | ||
* **// | * **// | ||
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* **// | * **// | ||
* **// | * **// | ||
- | | + | |
- | * //cross//: If we want to apply the Leave-One-Out Cross-Validation, | + | - //cross//: If we want to apply the Leave-One-Out Cross-Validation, |
- | * //UK_max// and // | + | - //UK_max// and // |
- | * // | + | - // |
- | * // | + | - // |
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As a resume, notice that the user only has to do the following about the configuration file: | As a resume, notice that the user only has to do the following about the configuration file: | ||
- | * Choosing you own **//UniversalKriging_path//** and referring to it the path **//general//**. | + | * Choosing you own **//repository_path//** and **//UniversalKriging_path//**. |
* Choosing one of the **// | * Choosing one of the **// | ||
* Choosing the Universal Kriging mode in terms of the covariates, the application, | * Choosing the Universal Kriging mode in terms of the covariates, the application, | ||
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* //#SBATCH --time=48: | * //#SBATCH --time=48: | ||
* //#SBATCH --time=01: | * //#SBATCH --time=01: | ||
+ | |||
+ | The user has to charge the model in the //bashrc// (referred to the machine): | ||
+ | * Open your bashrc: | ||
+ | <code bash> | ||
+ | vi ~/.bashrc | ||
+ | </ | ||
+ | |||
+ | * Save the modules: | ||
+ | <code bash> | ||
+ | module load R | ||
+ | </ | ||
+ | |||
+ | * Save your bashrc: | ||
+ | <code bash> | ||
+ | source ~/.bashrc | ||
+ | </ | ||
+ | |||
To submit the job regarding this methodology, | To submit the job regarding this methodology, |