added HMMER version 3.1b1
From the hmmer website: "This code is expected to be stable, but we’re releasing it as a beta test just to be careful. After some time in the wild, we’ll make a release candidate, and if you folks haven’t chewed any of that up too badly, we’ll make the final 3.1 release reasonably soon." I added runtest="check", which unveiled a bug in the build procedure of the unit test. The attached patch solves that (bug reported upstream).
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