Merge branch 'develop' into openfoam3.2

* develop: (102 commits)
  fix typo in bzip2 source URLs
  {perf}[dummy] ipp 9.0.1.150
  I->i
  stytle corrected
  {tools}[intel/2015b] HOD 3.0.3 w/ Python 2.7.10
  {devel}[intel/2015b] CMake 3.4.1
  {bio}[intel/2015b] Bioconductor 3.1 bundle w/ R 3.2.1
  {lib}[intel/2015b] scp 0.10.2 w/ Python 2.7.10
  {bio}[intel/2015b] Bowtie 2.2.5
  -openmp is required
  correctly fetch $EBROOTJELLYFISH from environment in CMakeLists.txt
  link to Jellyfish provided via EB via  in CMakeLists.txt
  {bio}[intel/2015b] Salmon 0.5.1 w/ Python 2.7.10
  avoid hardcoded $CMAKE_CXX_FLAGS for Sailfish
  fix versionsuffix for Cufflinks easyconfigs + remark
  add comment in patch file
  {bio}[intel/2015b] Cufflinks 2.2.1 + Eigen 3.2.7 + SAMtools 0.1.20
  {bio}[itnel/2015b] Sailfish 0.8.0
  fix permissions for PPfold .jar via postinstallcmds
  tiny style fix in PCRE easyconfig
  ...