Commits · 01ac23c1451960ec28b524f62fe2c087a3e48b3b · Computational Earth Sciences / easybuild-easyconfigs

01 Mar, 2017 7 commits
- Merge pull request #4217 from boegel/20170228145153_new_pr_randfold201 · 01ac23c1
  Kenneth Hoste authored Mar 01, 2017
```
{bio}[intel/2016b] randfold v2.0.1
```
  01ac23c1
- Merge pull request #4215 from boegel/20170228142816_new_pr_SpiecEasi20160830 · 05bd1e57
  Kenneth Hoste authored Mar 01, 2017
```
{lib}[intel/2016b] SpiecEasi v20160830
```
  05bd1e57
- Merge pull request #4211 from boegel/20170228132827_new_pr_OOMPA312 · 9da13293
  Kenneth Hoste authored Mar 01, 2017
```
{lib}[intel/2016b] OOMPA v3.1.2
```
  9da13293
- Merge pull request #4094 from verdurin/20170202162419_new_pr_PyTables322 · ce462065
  Kenneth Hoste authored Mar 01, 2017
```
{data,math}[foss/2016b] PyTables v3.2.2, numexpr v2.6.1
```
  ce462065
- Merge pull request #4213 from bartoldeman/openmpi-remove-with-threads · 12140e5a
  Kenneth Hoste authored Mar 01, 2017
```
OpenMPI-2.*: remove --with-threads configure option.
```
  12140e5a
- Merge pull request #4220 from ComputeCanada/JasPer-2.0.10 · cdf99976
  Kenneth Hoste authored Mar 01, 2017
```
Added recipe for JasPer 2.0.10. Recent versions use CMake rather than…
```
  cdf99976
- Merge pull request #6 from boegel/20170202162419_new_pr_PyTables322 · f781e9df
  Adam Huffman authored Feb 28, 2017
```
remove numpy 1.11.1 easyconfig using Python 2.7.12 since Python installation already includes numpy 1.11.1
```
  f781e9df
28 Feb, 2017 30 commits
- Merge pull request #4221 from boegel/Perl_PDF_API2 · 71622cbd
  Kenneth Hoste authored Feb 28, 2017
```
add PDF::API2 extension to Perl 5.24.0 easyconfigs + sync exts_list
```
  71622cbd
- Merge pull request #4121 from hajgato/opencv310_f16b · 215a4107
  Kenneth Hoste authored Feb 28, 2017
```
{vis}[foss/2016b] OpenCV 3.1.0 (REVIEW)
```
  215a4107
- Merge pull request #4216 from akesandgren/20170228144156_new_pr_iomkl2017a · b8b5c7fd
  Kenneth Hoste authored Feb 28, 2017
```
{toolchain}[dummy/dummy] iomkl v2017a
```
  b8b5c7fd
- Merge pull request #4226 from boegel/netcdf413_fix_Szip · 217bc5b8
  Kenneth Hoste authored Feb 28, 2017
```
fix check for Szip library in configure script for netCDF 4.1.3
```
  217bc5b8
- added cmake build dependency · 98456570
  Maxime Boissonneault authored Feb 28, 2017
  
  98456570
- Merge pull request #4222 from boegel/20170228181146_new_pr_BLASR22 · d2fdccb5
  Kenneth Hoste authored Feb 28, 2017
```
{bio}[intel/2016b] BLASR v2.2
```
  d2fdccb5
- cosmetic change · 04873c91
  Maxime Boissonneault authored Feb 28, 2017
  
  04873c91
- Merge pull request #4223 from boegel/20170228181320_new_pr_networkx11 · 843cb2b6
  Kenneth Hoste authored Feb 28, 2017
```
{tools}[intel/2016b] networkx v1.1
```
  843cb2b6
- Merge pull request #4218 from boegel/20170228151038_new_pr_ViennaRNA223 · a24aed1c
  Kenneth Hoste authored Feb 28, 2017
```
{bio}[intel/2016b] ViennaRNA v2.2.3
```
  a24aed1c
- fix check for Szip library in configure script for netCDF 4.1.3 · 650c7078
  Kenneth Hoste authored Feb 28, 2017
  
  650c7078
- adding easyconfigs: networkx-1.1-intel-2016b-Python-2.7.12.eb · 907f6bd2
  Kenneth Hoste authored Feb 28, 2017
  
  907f6bd2
- adding easyconfigs: BLASR-2.2-intel-2016b.eb · ce9b46c8
  Kenneth Hoste authored Feb 28, 2017
  
  ce9b46c8
- add PDF::API2 extension to Perl 5.24.0 easyconfigs + sync exts_list · c4e9582b
  Kenneth Hoste authored Feb 28, 2017
  
  c4e9582b
- remove verbose buildopts · c0f7edae
  Kenneth Hoste authored Feb 28, 2017
  
  c0f7edae
- Merge pull request #4210 from verdurin/20170228113705_new_pr_cuDNN51 · c594740e
  Kenneth Hoste authored Feb 28, 2017
```
{numlib}[dummy/dummy] cuDNN v5.1
```
  c594740e
- Added recipe for JasPer 2.0.10. Recent versions use CMake rather than Configure · f6ba9f30
  Maxime Boissonneault authored Feb 28, 2017
  
  f6ba9f30
- {bio}[intel/2016b] ViennaRNA v2.2.3 · 8ff202b1
  Kenneth Hoste authored Feb 28, 2017
  
  8ff202b1
- Add HPL 2.2 as test case. · 0a5a3aec
  Ake Sandgren authored Feb 28, 2017
  
  0a5a3aec
- Add checksum to OpenMPI config and fix style. · 9285c411
  Ake Sandgren authored Feb 28, 2017
  
  9285c411
- Reduce variable setting to a minimum · 09869c2c
  Ake Sandgren authored Feb 28, 2017
  
  09869c2c
- OpenMPI droped --with-threads configure option. See PR 4213 · 63337dd3
  Ake Sandgren authored Feb 28, 2017
  
  63337dd3
- iompi uses OpenMPI not Intel MPI. Fix description · 411e66ce
  Ake Sandgren authored Feb 28, 2017
  
  411e66ce
- clarify installing of included SQUID with comment · 3267d3b1
  Kenneth Hoste authored Feb 28, 2017
  
  3267d3b1
- adding easyconfigs: randfold-2.0.1-intel-2016b.eb · 42ce0387
  Kenneth Hoste authored Feb 28, 2017
  
  42ce0387
- adding easyconfigs: iomkl-2017a.eb · 91d00909
  Ake Sandgren authored Feb 28, 2017
  
  91d00909
- adding easyconfigs: SpiecEasi-20160830-intel-2016b-R-3.3.1.eb · 78346f0a
  Kenneth Hoste authored Feb 28, 2017
  
  78346f0a
- OpenMPI-2.*: remove --with-threads configure option. · 66f753fe
  Bart Oldeman authored Feb 28, 2017
```
OpenMPI builds now warn they don't know --with-threads.
See OpenMPI commit at
https://github.com/open-mpi/ompi/commit/7a55d49ca78bcc157749c04027515f12b026ec33
sed -i 's/--with-threads=posix //' OpenMPI-2*.eb
```
  66f753fe
- fix sanity_check_paths for OOMPA bundle · dc8c67ec
  Kenneth Hoste authored Feb 28, 2017
  
  dc8c67ec
- adding easyconfigs: OOMPA-3.1.2-intel-2016b-R-3.3.1.eb · 1afbb448
  Kenneth Hoste authored Feb 28, 2017
  
  1afbb448
- adding easyconfigs: cuDNN-5.1-CUDA-8.0.44.eb · 6ac0bc39
  Adam Huffman authored Feb 28, 2017
  
  6ac0bc39
27 Feb, 2017 3 commits
- Merge pull request #4204 from boegel/20170224194729_new_pr_ea-utils104807 · 2ac0db85
  Kenneth Hoste authored Feb 27, 2017
```
{bio}[intel/2016b] ea-utils v1.04.807
```
  2ac0db85
- add patch required to make building ea-utils with Intel compilers work · 5ff58b2b
  Kenneth Hoste authored Feb 27, 2017
  
  5ff58b2b
- ppicv->ippicv · f73bd7e2
  Balazs Hajgato authored Feb 27, 2017
  
  f73bd7e2