Commits · 06f86025bdccbd944a7dbd96803abd2e3d5995df · Computational Earth Sciences / easybuild-easyconfigs

14 Aug, 2015 7 commits
- New version of MuTect to use Java 1.7.0_80 · 06f86025
  Adam Huffman authored Aug 14, 2015
  
  06f86025
- Merge pull request #1857 from verdurin/1856_java_dep_updates · 55c4b583
  Kenneth Hoste authored Aug 14, 2015
```
1856 java dep updates
```
  55c4b583
- Use versionsuffix for Java dependency · 3b6e3db5
  Adam Huffman authored Aug 14, 2015
  
  3b6e3db5
- Add version of picard with Java 1.7.0_80 · b67eba3a
  Adam Huffman authored Aug 14, 2015
  
  b67eba3a
- Update GATK to use Java 1.7.0_80 · 7e11a016
  Adam Huffman authored Aug 14, 2015
  
  7e11a016
- Merge pull request #1853 from boegel/no_more_unresolved_deps · 90f10cc1
  Kenneth Hoste authored Aug 14, 2015
```
stop using 'unresolved_deps' in easyconfigs unit tests
```
  90f10cc1
- stop using 'unresolved_deps' in easyconfigs unit tests · 4c02e45f
  Kenneth Hoste authored Aug 14, 2015
  
  4c02e45f
12 Aug, 2015 2 commits
- Merge pull request #1696 from boegel/intel_2015b · dfd72ee4
  Kenneth Hoste authored Aug 12, 2015
```
{toolchain} intel/2015b (REVIEW)
```
  dfd72ee4
- Merge pull request #1695 from boegel/foss_2015b · fd89ee92
  Kenneth Hoste authored Aug 12, 2015
```
{toolchain} foss/2015b (REVIEW)
```
  fd89ee92
11 Aug, 2015 7 commits
- bump OpenMPI version to 1.8.8 in foss/2015b · 2f5c906f
  Kenneth Hoste authored Aug 11, 2015
  
  2f5c906f
- Merge branch 'develop' into foss_2015b · e98c34b0
  Kenneth Hoste authored Aug 11, 2015
  
  e98c34b0
- Merge pull request #1841 from boegel/ompi188_gompi2015b · f27daa9e
  Kenneth Hoste authored Aug 11, 2015
```
use OpenMPI 1.8.8 in gompi/2015b
```
  f27daa9e
- use OpenMPI 1.8.8 in gompi/2015b · ee708bfa
  Kenneth Hoste authored Aug 11, 2015
  
  ee708bfa
- Merge pull request #1694 from boegel/gompi_2015b · ac8d01e5
  Kenneth Hoste authored Aug 11, 2015
```
{toolchain} gompi/2015b (REVIEW)
```
  ac8d01e5
- Merge pull request #1837 from boegel/Autotools_GNU_493_225 · c52472d7
  Kenneth Hoste authored Aug 11, 2015
```
{devel}[GNU-4.9.3-2.25] Autotools 20150215 (REVIEW)
```
  c52472d7
- Merge pull request #1836 from boegel/GNU493225 · 10f84f46
  Kenneth Hoste authored Aug 11, 2015
```
{toolchain} GNU 4.9.3-2.25 (REVIEW)
```
  10f84f46
10 Aug, 2015 1 commit
- Merge pull request #1838 from boegel/gcc520 · 3aee788e
  Kenneth Hoste authored Aug 10, 2015
```
{compiler}[dummy] GCC 5.2.0 (REVIEW)
```
  3aee788e
08 Aug, 2015 9 commits
- {compiler}[dummy] GCC 5.2.0 · c424d2f5
  Kenneth Hoste authored Aug 08, 2015
  
  c424d2f5
- fix MPFR patch used in easyconfig for GCC 4.9.3 on top of binutils 2.25 · d151b46d
  Kenneth Hoste authored Aug 08, 2015
  
  d151b46d
- switch to GNU 4.9.3-2.25 · 289bb67f
  Kenneth Hoste authored Aug 08, 2015
  
  289bb67f
- switch to GCC 4.9.3 + GNU 4.9.3-2.25 · 8941cac1
  Kenneth Hoste authored Aug 08, 2015
  
  8941cac1
- switch to GCC 4.9.3 + GNU 4.9.3-2.25 · b3b0981f
  Kenneth Hoste authored Aug 08, 2015
  
  b3b0981f
- {devel}[GNU-4.9.3-2.25] Autotools 20150215 · 8cebbae9
  Kenneth Hoste authored Aug 08, 2015
  
  8cebbae9
- {toolchain} GNU 4.9.3-2.25 · 16da5970
  Kenneth Hoste authored Aug 08, 2015
  
  16da5970
- Merge pull request #1835 from boegel/fix_dump_template · c1e2aa83
  Kenneth Hoste authored Aug 08, 2015
```
put dummy template values in place to make comparison with dumped easyconfig more robust
```
  c1e2aa83
- put dummy template values in place to make comparison with dumped easyconfig more robust · ca880b15
  Kenneth Hoste authored Aug 08, 2015
  
  ca880b15
07 Aug, 2015 5 commits
- Merge pull request #1828 from boegel/bioconductor31 · 822d01be
  Kenneth Hoste authored Aug 07, 2015
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bump Bioconductor 3.1 package versions
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  822d01be
- Merge pull request #1832 from boegel/gc3pie242 · 5a5bc985
  Kenneth Hoste authored Aug 07, 2015
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{tools}[dummy] GC3Pie 2.4.2 (REVIEW)
```
  5a5bc985
- Merge pull request #1831 from boegel/style_PCRE_XZ · 2aafcff7
  Kenneth Hoste authored Aug 07, 2015
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style fixes in PCRE and XZ easyconfigs
```
  2aafcff7
- Merge pull request #1834 from JensTimmerman/fancylogger · d1cb3f9f
  Kenneth Hoste authored Aug 07, 2015
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correct import of fancylogger
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  d1cb3f9f
- correct import of fancylogger · 5a45e618
  Jens Timmerman authored Aug 07, 2015
  
  5a45e618
06 Aug, 2015 9 commits
- {tools}[dummy] GC3Pie 2.4.2 · fd12b56c
  Kenneth Hoste authored Aug 06, 2015
  
  fd12b56c
- Merge pull request #1820 from ehiggs/python-ipython-notebooklibs · b2caab7c
  Kenneth Hoste authored Aug 06, 2015
```
Add libraries for Python which are used for IPython notebook.
```
  b2caab7c
- style fixes in PCRE and XZ easyconfigs · 8d263161
  Kenneth Hoste authored Aug 06, 2015
  
  8d263161
- Update versions on @boegel's request. · 1e3d5ae4
  Ewan Higgs authored Aug 06, 2015
  
  1e3d5ae4
- Remove change from 2.7.9 and add it to the foss version. · e5218465
  Ewan Higgs authored Aug 06, 2015
  
  e5218465
- Merge pull request #1826 from ehiggs/bowtie · 362a52d8
  Kenneth Hoste authored Aug 06, 2015
```
{bio}[intel/2015a] Bowtie 1.1.2 (REVIEW)
```
  362a52d8
- Use buildopts instead of patching the makefile. · 14915716
  Ewan Higgs authored Aug 06, 2015
  
  14915716
- Merge pull request #1827 from boegel/libbeef · e95eb858
  Kenneth Hoste authored Aug 06, 2015
```
{chem}[intel/2015a] libbeef 0.1.1 (REVIEW)
```
  e95eb858
- bump Bioconductor 3.1 package versions · aa90db06
  Kenneth Hoste authored Aug 06, 2015
  
  aa90db06