Commits · 0c6fd5de37cfd984f6e447081876ec60d6899de2 · Computational Earth Sciences / easybuild-easyconfigs

02 Apr, 2014 1 commit
- Merge pull request #4 from fgeorgatos/TopHat_Bowtie2_Cufflinks_HTSeq_GMAP · 0c6fd5de
  Kenneth Hoste authored Apr 02, 2014
```
Top hat bowtie2 cufflinks htseq gmap
```
  0c6fd5de
15 Feb, 2014 4 commits
- uncomment Cufflinks in HPCBIOS_Bioinfo · 44657ab8
  Fotis Georgatos authored Feb 15, 2014
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  44657ab8
- add GMAP variants · 89f625fc
  Fotis Georgatos authored Feb 15, 2014
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  89f625fc
- add HTSeq builds · 4e42ac23
  Fotis Georgatos authored Feb 15, 2014
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  4e42ac23
- add Cufflinks-2.0.2-ictce-5.3.0.eb · 4e71d170
  Fotis Georgatos authored Feb 15, 2014
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  4e71d170
05 Dec, 2013 6 commits
- add ictce/5.5.0 easyconfigs for Bowtie2, TopHat, GMap, HTSeq + dependencies · a022f97a
  Kenneth Hoste authored Dec 05, 2013
  
  a022f97a
- add Cufflinks 2.1.1 ictce/5.5.0 easyconfig + required patch (curtosy @JensTimmerman) · 3f1e68fe
  Kenneth Hoste authored Dec 05, 2013
  
  3f1e68fe
- fix typo in Cufflinks easyconfigs · 3ce5b6de
  Kenneth Hoste authored Dec 05, 2013
  
  3ce5b6de
- Merge pull request #593 from boegel/samtools-0.1.19 · 350e0715
  Kenneth Hoste authored Dec 05, 2013
```
add easyconfigs and patch for SAMtools 0.1.19
```
  350e0715
- add missing zlib easyconfig for ictce/5.5.0 · a203b011
  Kenneth Hoste authored Dec 05, 2013
  
  a203b011
- add easyconfig for SAMtools with ictce/5.5.0, clean up corresponding goolf easyconfig · b6aff27f
  Kenneth Hoste authored Dec 05, 2013
  
  b6aff27f
30 Nov, 2013 3 commits
- Merge pull request #405 from boegel/pp · 2dc6aa35
  Kenneth Hoste authored Nov 30, 2013
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add easyconfigs for Parallel Python (PP)
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  2dc6aa35
- fix sanity check for PP · 47973783
  Kenneth Hoste authored Nov 30, 2013
  
  47973783
- fix remarks · 217c15c1
  Kenneth Hoste authored Nov 30, 2013
  
  217c15c1
29 Nov, 2013 1 commit
- added samtools-0.1.19 and required patches · be18a6e8
  pescobar authored Nov 29, 2013
```
this depends on modified samtools.py easyblock
```
  be18a6e8
25 Nov, 2013 3 commits
- Merge pull request #500 from fgeorgatos/contrib_qtop · 770c5246
  Kenneth Hoste authored Nov 25, 2013
```
contrib qtop
```
  770c5246
- Merge pull request #558 from boegel/version_bump · 0629483f
  Kenneth Hoste authored Nov 25, 2013
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bump version to v1.10.0.0dev
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  0629483f
- bump version to v1.10.0.0dev · fda77bc1
  Kenneth Hoste authored Nov 25, 2013
  
  fda77bc1
17 Nov, 2013 10 commits
- Merge pull request #544 from hpcugent/develop · d8422c6f
  Kenneth Hoste authored Nov 17, 2013
```
release EasyBuild v1.9.0
```
  v1.9.0.0
  
  d8422c6f
- Merge branch 'develop' into pp · 9965e229
  Kenneth Hoste authored Nov 17, 2013
  
  9965e229
- Merge pull request #536 from boegel/release_notes_v1.9.0 · c6c72960
  Kenneth Hoste authored Nov 17, 2013
```
bump version to 1.9.0.0, update release notes
```
  c6c72960
- add note on HDF5 · 8ac08b63
  Kenneth Hoste authored Nov 17, 2013
  
  8ac08b63
- fix release date for EB v1.9.0 · 0b6ae1a0
  Kenneth Hoste authored Nov 17, 2013
  
  0b6ae1a0
- Merge pull request #543 from boegel/fix_bugs · 5180a481
  Kenneth Hoste authored Nov 17, 2013
```
provide correct alternative for phonopy sanity check lib path
```
  5180a481
- provide correct alternative for phonopy sanity check lib path · 2956bda8
  Kenneth Hoste authored Nov 17, 2013
  
  2956bda8
- Merge pull request #542 from boegel/fix_bugs · 1a075c76
  Kenneth Hoste authored Nov 17, 2013
```
add alternative for phonopy sanity check
```
  1a075c76
- fix typo · d1cae743
  Kenneth Hoste authored Nov 17, 2013
  
  d1cae743
- add alternative for phonopy sanity check · 6cd84e18
  Kenneth Hoste authored Nov 17, 2013
  
  6cd84e18
16 Nov, 2013 2 commits
- Merge pull request #537 from boegel/fix_bugs · 952068bb
  Kenneth Hoste authored Nov 16, 2013
```
fix bugs in various easyconfig files
```
  952068bb
- update easyconfigs count · 41b08f18
  Kenneth Hoste authored Nov 16, 2013
  
  41b08f18
15 Nov, 2013 10 commits
- add Szip as dependency for Ferret, required because of linking to HDF5 lib · 4e8f74dc
  Kenneth Hoste authored Nov 15, 2013
  
  4e8f74dc
- fix typo · f3777776
  Kenneth Hoste authored Nov 15, 2013
  
  f3777776
- Merge branch 'develop' into fix_bugs · 98339465
  Kenneth Hoste authored Nov 15, 2013
  
  98339465
- add alternatives to sanity check for pandas · c7398c80
  Kenneth Hoste authored Nov 15, 2013
  
  c7398c80
- fix sanity check for motif · c76ac6fb
  Kenneth Hoste authored Nov 15, 2013
  
  c76ac6fb
- specify alternatives for matplotlib sanity check · 4c3f1444
  Kenneth Hoste authored Nov 15, 2013
  
  4c3f1444
- add alternatives for checking lxml egg in sanity check paths · 65ca5ed0
  Kenneth Hoste authored Nov 15, 2013
  
  65ca5ed0
- fix typo in SCons easyconfigs · 0415e085
  Kenneth Hoste authored Nov 15, 2013
  
  0415e085
- add missing libpng dep for freetype v2.5.0.1 · b7df4f49
  Kenneth Hoste authored Nov 15, 2013
  
  b7df4f49
- fix sanity check for matplotlib v1.3.x · b76f4874
  Kenneth Hoste authored Nov 15, 2013
  
  b76f4874