Commits · 1a26040af05cb275ca78c2c79d716bcb5bb13ee5 · Computational Earth Sciences / easybuild-easyconfigs · GitLab

01 Feb, 2013 8 commits
- add mpiBLAST for ictce/5.1.1 · 1a26040a
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  1a26040a
- hijacking Pull Request #87 to fix comments of some bio* easyconfigs · ac3784e6
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  ac3784e6
- hijacking Pull Request #87 to fix ABINIT · 4db70c64
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  4db70c64
- fix mpiBLAST with a patch as per #87 · 09818f8e
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  09818f8e
- adjust source_urls for MEME as per #87 · 9f7651c1
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  9f7651c1
- adjust sanity_check_paths for HMMER as per #87 · 8672c17b
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  8672c17b
- adjust source_urls for BFAST as per #87 · 47710737
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  47710737
- Fix ABySS easyconfigs as per #87 · f089d31c
  Fotis Georgatos authored Feb 01, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  f089d31c
30 Jan, 2013 1 commit
- fix comments and whitespace · 99b19348
  Fotis Georgatos authored Jan 30, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  99b19348
17 Jan, 2013 17 commits
- added ictce-4.0.6 compiled and tested versions for ABySS, BFAST, HMMER, MCL, MEME, mpiBLAST · 723b829a
  Fotis Georgatos authored Jan 17, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  723b829a
- Merge pull request #84 from fgeorgatos/contrib_mpiBLAST-1.6.0 · e5b180bb
  Kenneth Hoste authored Jan 17, 2013
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Added mpiBLAST-1.6.0
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  e5b180bb
- Merge pull request #4 from boegel/contrib_mpiBLAST-1.6.0 · 4773279f
  Fotis Georgatos authored Jan 17, 2013
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parallel build may fail, so avoid it
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  4773279f
- parallel build may fail, so avoid it · 2831a932
  Kenneth Hoste authored Jan 17, 2013
  
  2831a932
- Merge pull request #52 from claczny/contrib_Bioinfo_easyconfigs_by_Cedric · 29a1c31e
  Kenneth Hoste authored Jan 17, 2013
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Cufflinks, TopHat easyconfig contributions
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  29a1c31e
- Merge pull request #2 from boegel/contrib_Bioinfo_easyconfigs_by_Cedric · 118b7446
  Cedric Laczny authored Jan 17, 2013
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sync with develop
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  118b7446
- Merge branch 'develop' of github.com:hpcugent/easybuild-easyconfigs into contrib_mpiBLAST-1.6.0 · afa6b895
  Fotis Georgatos authored Jan 17, 2013
  
  afa6b895
- fixed sources line as per comment in #84 · b08f5b69
  Fotis Georgatos authored Jan 17, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  b08f5b69
- Merge pull request #49 from fgeorgatos/contrib_wiki2beamer · 9bf1b4c2
  Kenneth Hoste authored Jan 17, 2013
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init wiki2beamer
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  9bf1b4c2
- Merge pull request #3 from boegel/contrib_wiki2beamer · e0b4c667
  Fotis Georgatos authored Jan 17, 2013
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fix wikibeamer easyconfig, install it as a Python package
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  e0b4c667
- Merge branch 'develop' into contrib_Bioinfo_easyconfigs_by_Cedric · c39b43df
  Kenneth Hoste authored Jan 17, 2013
  
  c39b43df
- fix wikibeamer easyconfig, install it as a Python package · 4452882d
  Kenneth Hoste authored Jan 17, 2013
  
  4452882d
- Merge pull request #1 from boegel/contrib_Bioinfo_easyconfigs_by_Cedric · c683f3b2
  Cedric Laczny authored Jan 17, 2013
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minor cleanup in Cufflinks and Tophat easyconfigs (get rid of patches)
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  c683f3b2
- Merge pull request #83 from boegel/Python_packages · 907de1c3
  Kenneth Hoste authored Jan 17, 2013
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add numpy and scipy example easyconfigs
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  907de1c3
- get rid of unused Cufflinks patch · 0250d7ad
  Kenneth Hoste authored Jan 17, 2013
  
  0250d7ad
- get rid of patch for Tophat, --with-bam option is doing what it should be... · 6112f195
  Kenneth Hoste authored Jan 17, 2013
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get rid of patch for Tophat, --with-bam option is doing what it should be doing so no patch required
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  6112f195
- Merge branch 'contrib_Bioinfo_easyconfigs_by_Cedric' of... · 199f8a1e
  Kenneth Hoste authored Jan 17, 2013
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Merge branch 'contrib_Bioinfo_easyconfigs_by_Cedric' of github.com:claczny/easybuild-easyconfigs into contrib_Bioinfo_easyconfigs_by_Cedric

Conflicts:
	setup.py
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  199f8a1e
16 Jan, 2013 3 commits
- modularized version number for source downloading · 8b4529c2
  Fotis Georgatos authored Jan 16, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  8b4529c2
- fixed HPCBIOS policy number in header · 84a8877c
  Fotis Georgatos authored Jan 16, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  84a8877c
- added mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb · 03454905
  Fotis Georgatos authored Jan 16, 2013
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Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
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  03454905
15 Jan, 2013 2 commits
- Merge pull request #79 from stdweird/scoop · f04a374f
  Kenneth Hoste authored Jan 15, 2013
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build SCOOP/PyZMQ with zeromq 2.2.0 (3.2.0 and python interface is
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  f04a374f
- fix remarks by kehoste · 060792b2
  stdweird authored Jan 15, 2013
  
  060792b2
14 Jan, 2013 1 commit
- add patch file for numpy build with ictce · 5e24cdca
  Kenneth Hoste authored Jan 14, 2013
  
  5e24cdca
12 Jan, 2013 8 commits
- add ext_options to Rmpi · d061d8b0
  Kenneth Hoste authored Jan 12, 2013
  
  d061d8b0
- specify Rmpi version. 0.6 fails to build with ictce · 23bc0c79
  Kenneth Hoste authored Jan 12, 2013
  
  23bc0c79
- fix numpy ictce easyconfig filename · da84a96d
  Kenneth Hoste authored Jan 12, 2013
  
  da84a96d
- fix XML versionsuffix · c0a20900
  Kenneth Hoste authored Jan 12, 2013
  
  c0a20900
- don't use rname, easyconfig parser doesn't like it (too close to name) · 277d2dc9
  Kenneth Hoste authored Jan 12, 2013
  
  277d2dc9
- add versionsuffix for XML · d5c49815
  Kenneth Hoste authored Jan 12, 2013
  
  d5c49815
- add ictce easyconfigs for numpy/scipy · c9650d7a
  Kenneth Hoste authored Jan 12, 2013
  
  c9650d7a
- scipy should be built with -fPIC · 994a949e
  Kenneth Hoste authored Jan 12, 2013
  
  994a949e