add support for debian squeeze in CUDA, provide default warnings

Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>

add easyconfigs + patch files for OpenFOAM 2.2.0

Openmpi

Conflicts:
	easybuild/easyconfigs/f/flex/flex-2.5.35-ictce-5.3.0.eb
	easybuild/easyconfigs/f/flex/flex-2.5.37-ictce-5.3.0.eb
	test/easyconfigs/easyconfigs.py

add easyconfigs and patches for FSL (+ freeglut dep) and FreeSurfer

correct grib_api easyconfigs, add support for OpenIFS and FCM

add easyconfigs for FRC_align + Boost dep update

add easyconfigs for BLAST 2.2.28

add R 2.15.3, fix R library versions, sync R easyconfigs, fix XML source URLs

rework EMBOSS on top of libharu

add patch files and ictce easyconfig for libharu, include jemboss.jar in sanity check for EMBOSS + sync ictce easyconfig, add CMake ictce 4.1.13

add MPI and non-MPI easyconfigs for PSI

fix TopHat v2.0.8 deps

Conflicts:
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb

add pandas easyconfigs

zlib 1.2.7 is required because it's used by the SAMtools dep, and there's no reason to downgrade Boost compared to TopHat v2.0.4

add easyconfigs for bam2fastql, GATK and PAML

use MakeCp easyblock for bam2fastql and PAML, use Tarball easyblock for GATK + minor fixes to style and sanity check

Merge branch 'contrib_GATK_bam2fastql_PAML' of github.com:georgets/easybuild-easyconfigs into contrib_GATK_bam2fastql_PAML

always clean up log files of easyconfig tests, they're too big to keep around

remove all log files, including rotated ones

moar cleanup