Commits · 23f91104b705ad48bb482f5e9dd34e22c11e1b10 · Computational Earth Sciences / easybuild-easyconfigs

28 Feb, 2016 2 commits
- Change moduleclass to bio · 23f91104
  Adam Huffman authored Feb 28, 2016
  
  23f91104
- Port HTSeq and matplotlib dep to foss-2015b · 881a1af7
  Adam Huffman authored Feb 28, 2016
  
  881a1af7
27 Feb, 2016 6 commits
- Merge pull request #2580 from verdurin/gromacs-5.1.2 · 78cb61bc
  Kenneth Hoste authored Feb 27, 2016
```
{bio}[foss-2015b] GROMACS 5.1.2
```
  78cb61bc
- Merge pull request #2554 from gppezzi/tc-without-craype · ccffbda7
  Kenneth Hoste authored Feb 27, 2016
```
removed PrgEnv version, craype and fftw from the new Cray* XC toolchain (REVIEW)
```
  ccffbda7
- Merge pull request #2582 from verdurin/bowtie2-2.2.7 · fd892d44
  Kenneth Hoste authored Feb 27, 2016
```
{bio}[foss-2015b] Bowtie2 2.2.7
```
  fd892d44
- Fix typo · 9938fc7b
  Adam Huffman authored Feb 27, 2016
  
  9938fc7b
- Update Bowtie2 to 2.2.7 · 2537e3c0
  Adam Huffman authored Feb 27, 2016
  
  2537e3c0
- Update GROMACS to 5.1.2 for foss 2015b · c20c697f
  Adam Huffman authored Feb 26, 2016
  
  c20c697f
26 Feb, 2016 11 commits
- Merge pull request #2577 from boegel/20160226125812_new_pr_MLC30 · ac7ce3ca
  Kenneth Hoste authored Feb 26, 2016
```
{tools}[dummy/dummy] MLC v3.0
```
  ac7ce3ca
- Merge pull request #2578 from boegel/bioc_metagenomeSeq · 8c5c8bb3
  Kenneth Hoste authored Feb 26, 2016
```
add metagenomeSeq in Bioconductor bundle
```
  8c5c8bb3
- add metagenomeSeq in Bioconductor bundle · 37064bb7
  Kenneth Hoste authored Feb 26, 2016
  
  37064bb7
- add easyconfig MLC-3.0.eb · a8bfd828
  Kenneth Hoste authored Feb 26, 2016
  
  a8bfd828
- Merge pull request #2438 from pescobar/ImageMagick · b5ddb8d2
  Kenneth Hoste authored Feb 26, 2016
```
{vis} [goolf-1.4.10] ImageMagick-6.9.3-2 (REVIEW)
```
  b5ddb8d2
- style fix. builddeps after deps · ca253943
  Pablo Escobar authored Feb 26, 2016
  
  ca253943
- Merge branch 'ImageMagick' of github.com:pescobar/easybuild-easyconfigs into ImageMagick · 648f4350
  Pablo Escobar authored Feb 26, 2016
  
  648f4350
- Merge branch 'ImageMagick', remote branch 'origin' into ImageMagick · 8ce82139
  Pablo Escobar authored Feb 26, 2016
  
  8ce82139
- Merge pull request #43 from boegel/ImageMagick · 3753e9c0
  Pablo Escobar Lopez authored Feb 26, 2016
```
fix remarks/problems & add configopts for ImageMagick
```
  3753e9c0
- add configopts related to dependencies to ImageMagick easyconfig · f1b8cfbe
  Kenneth Hoste authored Feb 26, 2016
  
  f1b8cfbe
- fix remarks by @ladc · d10e09de
  Kenneth Hoste authored Feb 26, 2016
  
  d10e09de
25 Feb, 2016 12 commits
- GROMACS 5.1.2 for foss 2015b · 2b0f1210
  Adam Huffman authored Feb 25, 2016
  
  2b0f1210
- Merge pull request #2569 from verdurin/cutadapt-1.9.1 · 0432f22b
  Kenneth Hoste authored Feb 25, 2016
```
Update cutadapt to 1.9.1 for foss-2015b
```
  0432f22b
- Use SHLIB_EXT for Python shared objects · 6d8707cc
  Adam Huffman authored Feb 25, 2016
  
  6d8707cc
- Merge pull request #2573 from hajgato/xorg-macros2016a · 1097eb5c
  Kenneth Hoste authored Feb 25, 2016
  
  1097eb5c
- {devel}[intel-2016b] xorg-mactos 1.19.0 (REVIEW) · 03e33466
  Balazs Hajgato authored Feb 25, 2016
  
  03e33466
- Merge pull request #2571 from verdurin/star-2.5.1-foss-2015b · a13df4d9
  Kenneth Hoste authored Feb 25, 2016
  
  a13df4d9
- Merge pull request #2572 from verdurin/picard-2.1.0 · 67619a69
  Kenneth Hoste authored Feb 25, 2016
  
  67619a69
- Merge pull request #2568 from verdurin/fastqc-dummy-0.11.4 · b784d2a2
  Kenneth Hoste authored Feb 25, 2016
```
Update fastqc dummy to 0.11.4
```
  b784d2a2
- Update picard to 2.1.0 including move to GitHub · 46da2c8b
  Adam Huffman authored Feb 25, 2016
  
  46da2c8b
- Port STAR 2.5.1b to foss-2015b · ea900fa9
  Adam Huffman authored Feb 25, 2016
  
  ea900fa9
- Update cutadapt to 1.9.1 for foss-2015b, update homepage/description and authors · 6666182f
  Adam Huffman authored Feb 25, 2016
  
  6666182f
- Update fastqc dummy to 0.11.4 · 34f5c330
  Adam Huffman authored Feb 25, 2016
  
  34f5c330
24 Feb, 2016 9 commits
- Merge pull request #2561 from pescobar/pcre-configure-fix · 5a3a010a
  Kenneth Hoste authored Feb 24, 2016
```
fix pcre config options. Required for future R lang releases
```
  5a3a010a
- fixed wrong reference to prgenv-gnu · b7a106dd
  perettig authored Feb 24, 2016
  
  b7a106dd
- fix pcre config options. Required for future R lang releases · 986ed755
  Pablo Escobar authored Feb 24, 2016
  
  986ed755
- Merge pull request #2560 from hajgato/eudev315i2016a · d83f6ee0
  Kenneth Hoste authored Feb 24, 2016
```
{system}[intel-2016b] eudev 3.1.5 (REVIEW)
```
  d83f6ee0
- Merge pull request #2557 from pescobar/ctffind · a564da17
  Kenneth Hoste authored Feb 24, 2016
```
{bio} [intel/2015a] ctffind-4.0.17  (Review) 
```
  a564da17
- Removed version from PrgEnv-*, as recommended by Cray (and in order to avoid the swap bugs) · 88d299aa
  perettig authored Feb 24, 2016
  
  88d299aa
- Merge pull request #2559 from hajgato/llvm371intel · d19b2e00
  Kenneth Hoste authored Feb 24, 2016
```
{compiler}[intel-2016b] LLVM 3.7.1 (REVIEW)
```
  d19b2e00
- {system}[intel-2016b] eudev 3.1.5 (REVIEW) · 1c022d28
  Balazs Hajgato authored Feb 24, 2016
  
  1c022d28
- {compiler}[intel-2016b] LLVM 3.7.1 (REVIEW) · 2a35ad17
  Balazs Hajgato authored Feb 24, 2016
  
  2a35ad17