{data,tools}[intel/2017a] HDF5 v1.10.0-patch1, Szip v2.1

{vis}[intel/2017a] JasPer v2.0.12

{cae}[intel/2016b,intel/2017a] SWASH v3.14, SWASH v3.14

{bio}[intel/2016b] Bowtie 2.2.9

{tools}[intel/2016b] imbalanced-learn v0.2.1

{chem}[intel/2016b] QuTiP v4.1.0 (REVIEW)

bump version to v3.2.0.dev0

{tools}[dummy/dummy] EasyBuild v3.1.2

release EasyBuild v3.1.2

Bowtie2 for Intel: Changed the easyconfig so that the patch from the previous commit is not needed; removed the patch.

bump to v3.1.2 and update release notes

Bowtie2 - With a patch to change the Makefile to use better compiler options for Intel, also based on a suggestion on the Allinea blog

rename S.A.G.E. to SAGE, can't have directories with trailing dot in Windows

{bio}[foss/2016b,intel/2016b] HTSlib v1.4, HTSlib v1.4

{bio}[foss/2016b] SAMtools v1.4

{math}[intel/2016b] snaphu v1.4.2

{numlib}[intel/2016b] Triangle v1.6

prepare release notes for eb312

remove include/GL/wglext.h from Mesa sanity check

{tools}[intel/2016b] sketchmap v20170130