also fix URLs in PLINK-1.07-x86_64.eb

{bio}[foss/2016b] Bowtie 1.2.1.1

{bio}[GCCcore/6.4.0] StringTie v1.3.3

Use modextrapaths instead of modextravars in OpenMM easyconfig

{data}[GCCcore/6.4.0] HDF v4.2.13

{bio}[foss/2016b] Bowtie2 2.3.2

{bio}[intel/2016b] Pysam v0.8.4

{data}[intel/2017a] HDF5 v1.8.19

{data}[intel/2017a] netcdf4-python v1.2.9, netCDF v4.4.1.1 w/ HDF5 v1.10.1

adding easyconfigs: netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb, netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb

{bio} BFAST 0.7.0a foss-2016b with patch for inline functions

{bio}[foss/2016b] minimap2 v2.0rc1

{phys}[intel/2017a] Siesta v4.0.1, Siesta v4.1-b3

add zlib as depedency to recent util-linux easyconfigs

Add required zlib dependency for util-linux 2.29.2

fix version and source for Seurat, add extensions required by Seurat in R 3.4.0 easyconfig

{bio}[intel/2017a] UNAFold v3.8

{data}[intel/2017a] xarray v0.9.6

{chem}[dummy] ORCA 4.0.1 (REVIEW)

{numlib}[intel/2016b] Armadillo 7.950.1 w/ Python 2.7.12

also add checksums to Perl 5.24.1 easyconfig using intel/2017a

{data}[foss/2017a] HDF5 v1.10.1

{bio}[foss/2017a] Trinity 2.4.0 (REVIEW)