Commits · 6a6f03e0dc716c58407db7d76a9c10a22c65e5dd · Computational Earth Sciences / easybuild-easyconfigs

09 Dec, 2014 7 commits

Merge branch 'develop' into RELION · 6a6f03e0
Kenneth Hoste authored Dec 09, 2014
```
Conflicts:
	easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb
```
6a6f03e0
style fixes · 391d575f
Kenneth Hoste authored Dec 09, 2014

391d575f
Merge pull request #1061 from hajgato/libexpat_with_perl_bindings2 · 368003bc
Kenneth Hoste authored Dec 09, 2014
```
Expat with perl bindings
```
368003bc
Dependencies in separate lines · ab1dc471
Balázs Hajgató authored Dec 09, 2014

ab1dc471
Dependencies in separate lines · 34e016d8
Balázs Hajgató authored Dec 09, 2014

34e016d8
Dependencies in separate lines · 34aedb8b
Balázs Hajgató authored Dec 09, 2014

34aedb8b

Merge branch 'develop' into RELION · b7852e37

Kenneth Hoste authored Dec 09, 2014

Conflicts:
	easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb
	easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb
	easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb
	easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb
	easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb
	easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb
	easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb
	easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb
	easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb
	easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb
	easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb

b7852e37

07 Dec, 2014 1 commit
- Merge pull request #1013 from boegel/fftw_threads · 6a801f7f
  Kenneth Hoste authored Dec 07, 2014
```
also build fftw3_threads libraries, and enhance sanity checks
```
  6a801f7f
03 Dec, 2014 6 commits
- Merge pull request #1224 from boegel/doc_refs · cb541233
  Kenneth Hoste authored Dec 03, 2014
```
fix documentation references
```
  cb541233
- fix sanity check for FFTW v3.3.4 with Intel-based toolchains (no quad) · b5b4beec
  Kenneth Hoste authored Dec 03, 2014
  
  b5b4beec
- fix links to docs · ce1cdedb
  Kenneth Hoste authored Dec 03, 2014
  
  ce1cdedb
- Merge branch 'master' into develop · 75e0679b
  Kenneth Hoste authored Dec 03, 2014
  
  75e0679b
- fix remark, sync new FFTW 3.3.4 easyconfigs · ac0185ca
  Kenneth Hoste authored Dec 03, 2014
  
  ac0185ca
- Merge branch 'develop' into fftw_threads · 5b0ac89e
  Kenneth Hoste authored Dec 03, 2014
  
  5b0ac89e
28 Nov, 2014 4 commits
- Merge pull request #1214 from wpoely86/hdf5 · 54c1d7d6
  Kenneth Hoste authored Nov 28, 2014
```
Add HDF5 for ictce 7.1.2
```
  54c1d7d6
- HDF5: fix missing dep · f12be5fd
  Ward Poelmans authored Nov 28, 2014
  
  f12be5fd
- Fix patch filename · 25f3cf9a
  Ward Poelmans authored Nov 28, 2014
  
  25f3cf9a
- Add HDF5 for ictce 7.1.2 · f0c717b0
  Ward Poelmans authored Nov 28, 2014
  
  f0c717b0
27 Nov, 2014 2 commits
- Merge pull request #1210 from truatpasteurdotfr/bug_fix_permissions_consistency.take.3 · 17006207
  Kenneth Hoste authored Nov 27, 2014
```
bug_fix_permissions_consistency.take.3
```
  17006207
- bug_fix_permissions_consistency.take.3 · e76608da
  Tru Huynh authored Nov 27, 2014
  
  e76608da
25 Nov, 2014 2 commits
- Merge pull request #1207 from rjeschmi/openmpi-bug-line-repeate · a00a64dc
  Kenneth Hoste authored Nov 25, 2014
```
Somehow a line got repeated in openmpi-1.8.1
```
  a00a64dc
- just removing a duplicate line · be795472
  Robert Schmidt authored Nov 25, 2014
  
  be795472
22 Nov, 2014 2 commits
- Merge pull request #1192 from wpoely86/arpack · 3d8868df
  Kenneth Hoste authored Nov 22, 2014
```
New arpack with new ictce toolchain
```
  3d8868df
- Somehow a line got repeated · c81a1e90
  Robert Schmidt authored Nov 21, 2014
```
Probably won't cause problems, but clearly a bug.
```
  c81a1e90
21 Nov, 2014 2 commits
- Merge pull request #1197 from rjeschmi/samtools1.1 · 74d8f214
  Kenneth Hoste authored Nov 21, 2014
```
A new SAMtools 1.1 build
```
  74d8f214
- Merge pull request #1 from boegel/samtools1.1 · 43b2cdc4
  Robert Schmidt authored Nov 20, 2014
```
sync with other open SAMtools PR + add intel/2014b easyconfig
```
  43b2cdc4
20 Nov, 2014 2 commits

add easyconfig for SAMtools w/ intel/2014b · bfb433a1
Kenneth Hoste authored Nov 20, 2014

bfb433a1

Merge remote-tracking branch 'github_pescobar/samtools_homepage' into samtools1.1 · 65e1504f

Kenneth Hoste authored Nov 20, 2014

Conflicts:
	easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb
	easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb
	easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb
	easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb
	easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb
	easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb

65e1504f

18 Nov, 2014 1 commit
- A new SAMtools 1.1 build · 3d51ec0e
  Robert Schmidt authored Nov 18, 2014
  
  3d51ec0e
13 Nov, 2014 1 commit
- New arpack with new ictce toolchain · 8e7a062c
  Ward Poelmans authored Nov 13, 2014
  
  8e7a062c
04 Nov, 2014 5 commits
- Merge pull request #1184 from boegel/README_docs · c12836a9
  Kenneth Hoste authored Nov 04, 2014
```
update/clean up README
```
  c12836a9
- drop title in README · 087056b8
  Kenneth Hoste authored Nov 04, 2014
  
  087056b8
- fix description in setup.py, more cosmetics · 4399d599
  Kenneth Hoste authored Nov 04, 2014
  
  4399d599
- cosmetic changes · 69ea1be6
  Kenneth Hoste authored Nov 04, 2014
  
  69ea1be6
- update/clean up README · dd8aee93
  Kenneth Hoste authored Nov 04, 2014
  
  dd8aee93
30 Oct, 2014 3 commits
- Merge pull request #1177 from wpoely86/gcc-4.9.2 · ccde6788
  Kenneth Hoste authored Oct 30, 2014
```
Updated to GCC 4.9.2
```
  ccde6788
- Updated to GCC 4.9.2 · 10b89176
  Ward Poelmans authored Oct 30, 2014
  
  10b89176
- Merge pull request #1168 from geimer/fix-openmpi · 45686bdb
  Kenneth Hoste authored Oct 30, 2014
```
Removed unnecessary build dependencies for OpenMPI
```
  45686bdb
28 Oct, 2014 1 commit
- Removed unnecessary build dependencies for OpenMPI · 335d67ba
  Markus Geimer authored Oct 28, 2014
  
  335d67ba
27 Oct, 2014 1 commit
- updated SAMtools homepage in every easyconfig · fc7b412f
  pescobar authored Oct 27, 2014
  
  fc7b412f