add widgetsnbextension extension to IPython 5.1.0 easyconfig, fix modulename for Jinja2 and Pygments

{bio}[dummy/dummy] findhap v4

{bio}[foss/2016b] Cufflinks v2.2.1, Boost v1.61.0, SAMtools v0.1.19

Fix hard coded source file version

{bio}[intel/2016b] PhyloBayes-MPI v20161021

{toolchain}[dummy/dummy] iomkl v2017.01, iompi v2017.01

{bio}[intel/2016b] LoFreq v2.1.2

{bio}[intel/2016b] SAMtools v1.3.1, HTSlib v1.3.2

{vis} [intel/2016b] ETE/3.0.0b36 (READY)

The patches aren't needed any longer.
Re-enable enable-mpi-thread-multiple, it was a site local change that
shouldn't have been there in the first place.

Drop GCC suffix in toolchain version.

adding easyconfigs: Cufflinks-2.2.1-foss-2016b.eb, Boost-1.61.0-foss-2016b-Python-2.7.12.eb, SAMtools-0.1.19-foss-2016b.eb and Eigen

Add missing dep Eigen

{bio}[foss/2016b] MAFFT v7.305

{bio}[foss/2016b] GMAP-GSNAP v2016-11-07

{bio}[foss/2016b] Oases v0.2.08

{vis}[intel/2016b] OpenCV v3.1.0

{bio,lib}[foss/2016b] FASTX-Toolkit v0.0.14, libgtextutils v0.7

{lib}[intel/2016b] XGBoost v0.6a2, XGBoost v0.6a2

{bio}[foss/2016b] Exonerate v2.4.0

{bio}[foss/2016b] ClustalW2 v2.1

{bio}[foss/2016b] khmer v1.4.1

{bio}[foss/2016b] seqtk v1.2

{bio}[dummy/] picard v2.1.1

{numlib}[foss/2016b] GSL v2.1