{devel}[dummy/dummy] Maven v3.5.0

{devel}[GCCcore/6.4.0,dummy/dummy] CMake v3.9.1

{bio}[foss/2016b] SAMtools v1.5

{devel}[dummy/] Spark v2.2.0

{data}[intel/2017a] destiny 2.5.6 w/ R 3.4.0

{vis}[intel/2017a] plotly 4.7.1 w/ R 3.4.0

{bio}[intel/2017a] SCnorm 0.99.7 w/ R 3.4.0

add additional extensions for R 3.4.0 and Bioconductor 3.5 bundle

{tools}[dummy/] htop v2.0.1

also fix URLs in PLINK-1.07-x86_64.eb

{bio}[foss/2016b] Bowtie 1.2.1.1

{bio}[GCCcore/6.4.0] StringTie v1.3.3

Use modextrapaths instead of modextravars in OpenMM easyconfig

{data}[GCCcore/6.4.0] HDF v4.2.13

{bio}[foss/2016b] Bowtie2 2.3.2

{bio}[intel/2016b] Pysam v0.8.4

{data}[intel/2017a] HDF5 v1.8.19

{data}[intel/2017a] netcdf4-python v1.2.9, netCDF v4.4.1.1 w/ HDF5 v1.10.1

adding easyconfigs: netcdf4-python-1.2.9-intel-2017a-Python-2.7.13.eb, netCDF-4.4.1.1-intel-2017a-HDF5-1.10.1.eb

{bio} BFAST 0.7.0a foss-2016b with patch for inline functions