Commits · 9c9795056460d74f53e4b24f2af32e318211764d · Computational Earth Sciences / easybuild-easyconfigs

17 Nov, 2017 30 commits
- Based on Boegels review: changed EasyConfigs to comply to code formatting... · 9c979505
  casparl authored Nov 17, 2017
```
Based on Boegels review: changed EasyConfigs to comply to code formatting rules. Reordered some items. Changed checksums to SHA256. Removed BLAS & Lapack libs as they don't seem to be used/linked to libRmath anyway. Added more specific sanity check.
```
  9c979505
- adding easyconfigs: QTLtools-1.1-intel-2016b.eb, Rmath-3.3.1-intel-2016b.eb · 2879a7e1
  casparl authored Nov 17, 2017
  
  2879a7e1
- Merge pull request #5346 from boegel/20171115170311_new_pr_Mesa1724 · 70455c4a
  wpoely86 authored Nov 17, 2017
```
{vis}[intel/2017b] Mesa v17.2.4, libGLU 9.0.0
```
  70455c4a
- Merge pull request #5350 from boegel/20171116193007_new_pr_BWA0717 · 3720ef6c
  Adam Huffman authored Nov 17, 2017
```
{bio}[intel/2017b] BWA v0.7.17
```
  3720ef6c
- Merge pull request #5358 from boegel/20171117154708_new_pr_CIRI206 · d92b5730
  Adam Huffman authored Nov 17, 2017
```
{bio}[intel/2017b] CIRI v2.0.6
```
  d92b5730
- Merge pull request #5351 from boegel/20171116193037_new_pr_segemehl020 · 0e06754a
  Adam Huffman authored Nov 17, 2017
```
{bio}[intel/2017b] segemehl v0.2.0
```
  0e06754a
- fix @verdurin's affiliation · 5de065d9
  Kenneth Hoste authored Nov 17, 2017
  
  5de065d9
- Merge pull request #5343 from boegel/20171115160301_new_pr_NLopt242 · f1657550
  wpoely86 authored Nov 17, 2017
```
{numlib}[intel/2017b] NLopt v2.4.2
```
  f1657550
- Merge pull request #5321 from boegel/20171109225441_new_pr_LLVM500 · 16824463
  wpoely86 authored Nov 17, 2017
```
{compiler}[intel/2017b] LLVM v5.0.0
```
  16824463
- Merge pull request #5348 from boegel/20171116192202_new_pr_find_circ1220170228 · 798beb33
  Adam Huffman authored Nov 17, 2017
```
{bio}[intel/2017b] find_circ v1.2-20170228
```
  798beb33
- Merge pull request #5357 from boegel/20171117154047_new_pr_Bowtie1211 · aa07b5e7
  wpoely86 authored Nov 17, 2017
```
{bio}[intel/2017b] Bowtie v1.2.1.1
```
  aa07b5e7
- Merge pull request #5356 from boegel/20171117141914_new_pr_CIRCexplorer1110 · 1abbe741
  wpoely86 authored Nov 17, 2017
```
{bio}[intel/2017b] CIRCexplorer v1.1.10
```
  1abbe741
- ' -> " · 09f66f4b
  Kenneth Hoste authored Nov 17, 2017
  
  09f66f4b
- adding easyconfigs: CIRI-2.0.6-intel-2017b-Perl-5.26.0.eb · 68c8fe3f
  Kenneth Hoste authored Nov 17, 2017
  
  68c8fe3f
- adding easyconfigs: Bowtie-1.2.1.1-intel-2017b.eb · e01c275f
  Kenneth Hoste authored Nov 17, 2017
  
  e01c275f
- adding easyconfigs: CIRCexplorer-1.1.10-intel-2017b-Python-2.7.14.eb · c4fe7b95
  Kenneth Hoste authored Nov 17, 2017
  
  c4fe7b95
- Merge pull request #5333 from tovrstra/cmmsoft6 · 56a9c175
  Kenneth Hoste authored Nov 17, 2017
```
{chem}[intel/2017b] TAMkin 1.4.2
```
  56a9c175
- Fix silly mistakes in TAMkin eb · 8abb6b47
  Toon Verstraelen authored Nov 17, 2017
  
  8abb6b47
- Merge pull request #5347 from boegel/20171116175111_new_pr_pybedtools0710 · 498bbd85
  Adam Huffman authored Nov 17, 2017
```
{bio}[intel/2017b] pybedtools v0.7.10, Pysam v0.13, BEDTools v2.26.0
```
  498bbd85
- add back @pescobar's credits in segemehl easyconfigs · 93df13f5
  Kenneth Hoste authored Nov 17, 2017
  
  93df13f5
- consistently add -DLLVM_ENABLE_RTTI=1 to LLVM configure options (required for Mesa) · 1b43ffcf
  Kenneth Hoste authored Nov 17, 2017
  
  1b43ffcf
- add back -DLLVM_ENABLE_RTTI=1 in LLVM easyconfig (required for Mesa) · 4015915a
  Kenneth Hoste authored Nov 17, 2017
  
  4015915a
- also check for .so in NLopt easyconfigs · 3e93aa36
  Kenneth Hoste authored Nov 17, 2017
  
  3e93aa36
- consistently use --DCMAKE_BUILD_TYPE=Release in recent LLVM easyconfigs · a4922653
  Kenneth Hoste authored Nov 17, 2017
  
  a4922653
- bump LLVM dep for Mesa to 5.0.0 · 2b6b9cd0
  Kenneth Hoste authored Nov 17, 2017
  
  2b6b9cd0
- use -DCMAKE_BUILD_TYPE=Release when building LLVM · 407b4674
  Kenneth Hoste authored Nov 17, 2017
  
  407b4674
- fix @verdurin's affiliation · d8474eb9
  Kenneth Hoste authored Nov 17, 2017
  
  d8474eb9
- Merge pull request #5341 from boegel/20171115154328_new_pr_GDAL222 · f88d0804
  wpoely86 authored Nov 17, 2017
```
{data}[intel/2017b] GDAL v2.2.2
```
  f88d0804
- Merge pull request #5342 from boegel/20171115160120_new_pr_libsndfile1028 · 4ac3da3a
  wpoely86 authored Nov 17, 2017
```
{lib}[GCCcore/6.4.0] libsndfile v1.0.28
```
  4ac3da3a
- Merge pull request #5349 from boegel/20171116192937_new_pr_TopHat211 · 03fb6e95
  Adam Huffman authored Nov 17, 2017
```
{bio}[intel/2017b] TopHat v2.1.1
```
  03fb6e95
16 Nov, 2017 8 commits
- adding easyconfigs: segemehl-0.2.0-intel-2017b.eb · 01294bdc
  Kenneth Hoste authored Nov 16, 2017
  
  01294bdc
- adding easyconfigs: BWA-0.7.17-intel-2017b.eb · 15901ecb
  Kenneth Hoste authored Nov 16, 2017
  
  15901ecb
- adding easyconfigs: TopHat-2.1.1-intel-2017b.eb · 5d3409d7
  Kenneth Hoste authored Nov 16, 2017
  
  5d3409d7
- rename find_circ source tarball after download, add checksum for find_circ patch file · 488b7318
  Kenneth Hoste authored Nov 16, 2017
  
  488b7318
- {bio}[intel/2017b] find_circ v1.2-20170228 · db7c7d0a
  Kenneth Hoste authored Nov 16, 2017
  
  db7c7d0a
- fix checksum of pybedtools patch · b8658531
  Kenneth Hoste authored Nov 16, 2017
  
  b8658531
- {bio}[intel/2017b] pybedtools v0.7.10, Pysam v0.13, BEDTools v2.26.0 · 4e14ed3c
  Kenneth Hoste authored Nov 16, 2017
  
  4e14ed3c
- Merge pull request #5340 from boegel/20171115152316_new_pr_netCDF450 · 3499d9bb
  Adam Huffman authored Nov 16, 2017
```
{data,tools}[GCCcore/6.4.0,intel/2017b] netCDF v4.5.0, cURL v7.56.1
```
  3499d9bb
15 Nov, 2017 2 commits
- Merge pull request #5339 from boegel/20171115152106_new_pr_JasPer2014 · 9dfb5585
  Adam Huffman authored Nov 15, 2017
```
{vis}[GCCcore/6.4.0] JasPer v2.0.14
```
  9dfb5585
- Merge pull request #5335 from boegel/20171115135337_new_pr_Tk867 · 6993f0b1
  Adam Huffman authored Nov 15, 2017
```
{vis}[intel/2017b] Tk v8.6.7
```
  6993f0b1