Commits · ac0349f35585080ee9eea14778cfd3746c337425 · Computational Earth Sciences / easybuild-easyconfigs

12 Feb, 2015 26 commits
- Merge pull request #1393 from pescobar/intel-2015.02 · ac0349f3
  Kenneth Hoste authored Feb 12, 2015
```
{toolchain} [intel/2015.02] (REVIEW)
```
  ac0349f3
- Merge pull request #1399 from boegel/GATK_rename · 69b8ff54
  Kenneth Hoste authored Feb 12, 2015
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rename GenomeAnalysisTk easyconfigs to GATK
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  69b8ff54
- Merge pull request #568 from fgeorgatos/contrib_mroe_bioinfo · 40414602
  Kenneth Hoste authored Feb 12, 2015
```
[goolf/1.4.10, ictce/5.3.0] FSA, PRANK, SMALT, Infernal and deps (WIP)
```
  40414602
- Merge pull request #1282 from pescobar/cutadapt-newer · 028f237b
  Kenneth Hoste authored Feb 12, 2015
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{bio} [foos/2014b] cutadapt (REVIEW)  
```
  028f237b
- Merge pull request #1400 from a-mazur/coot · cb3f4d11
  Kenneth Hoste authored Feb 12, 2015
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{bio}[dummy] Coot 0.8.1 (Review)
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  cb3f4d11
- Merge pull request #1167 from pescobar/emboss_java · cf87b577
  Kenneth Hoste authored Feb 12, 2015
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added Java dependencies to EMBOSS easyconfigs
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  cf87b577
- renamed the easyconfig file name · 9eaecd9c
  Adam Mazur authored Feb 12, 2015
  
  9eaecd9c
- use Tarball easyblock for renamed GATK easyconfigs · ff0235fb
  Kenneth Hoste authored Feb 12, 2015
  
  ff0235fb
- really bugfix this MAFFT · 16e6b57e
  Fotis Georgatos authored Feb 12, 2015
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Signed-off-by: Fotis Georgatos <fotis@cern.ch>
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  16e6b57e
- bugfix filename of MAFFT for ictce/5.3.0 · 37e080af
  Fotis Georgatos authored Feb 12, 2015
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Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  37e080af
- fix name/sources in renamed GATK easyconfigs · a25e81ed
  Kenneth Hoste authored Feb 12, 2015
  
  a25e81ed
- Merge pull request #12 from boegel/emboss_java · 555ed342
  Pablo Escobar Lopez authored Feb 12, 2015
```
revert back to v1.7.0_10 for compatibility with HPCBIOS easyconfigs
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  555ed342
- revert back to v1.7.0_10 for compatibility with HPCBIOS easyconfigs · a002266e
  Kenneth Hoste authored Feb 12, 2015
  
  a002266e
- easyconfig for Coot · 33217937
  Adam Mazur authored Feb 12, 2015
  
  33217937
- fix rename screwup · bec2794c
  Kenneth Hoste authored Feb 12, 2015
  
  bec2794c
- Merge pull request #1155 from pescobar/gatk · 9ff97ba0
  Kenneth Hoste authored Feb 12, 2015
```
GATK-3.3-0 with message on load (modloadmsg) for convenience
```
  9ff97ba0
- rename GenomeAnalysisTk easyconfigs to GATK · 22a27248
  Kenneth Hoste authored Feb 12, 2015
  
  22a27248
- style fixes · 0f558843
  pescobar authored Feb 12, 2015
  
  0f558843
- Merge branch 'develop' of https://github.com/hpcugent/easybuild-easyconfigs into emboss_java · 7eb81bda
  pescobar authored Feb 12, 2015
```
Conflicts:
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb
```
  7eb81bda
- Merge pull request #1269 from pescobar/picard-1.119 · 30308fcf
  Kenneth Hoste authored Feb 12, 2015
```
{bio}[dummy] Picard 1.119 (REVIEW)
```
  30308fcf
- updated to latest intel-mpi · 949caa1d
  Pablo Escobar Lopez authored Feb 12, 2015
  
  949caa1d
- Merge pull request #1398 from pescobar/java_1.7u75 · f6116972
  Kenneth Hoste authored Feb 12, 2015
```
[lang]{dummy} Java 1.7.0_75 (REVIEW)
```
  f6116972
- updated picard to latest java · ad159720
  pescobar authored Feb 12, 2015
  
  ad159720
- added java 1.7.0_75 · e9db7b14
  pescobar authored Feb 12, 2015
  
  e9db7b14
- added HPL easyconfig for intel-2015.02 toolchain · 75703b90
  Pablo Escobar Lopez authored Feb 12, 2015
  
  75703b90
- removed site specific license path · 69ccaa4c
  Pablo Escobar Lopez authored Feb 12, 2015
  
  69ccaa4c
11 Feb, 2015 5 commits
- Merge pull request #1397 from sguera/new_gmvolf_toolchain · 98d8b769
  Kenneth Hoste authored Feb 11, 2015
```
 {toolchains} [gmvapich2, gmvolf]
```
  98d8b769
- HPL v2.1 built on top of GMVOLF 1.7.20 toolchain · 89a6a936
  Danilo Guerrera authored Feb 11, 2015
  
  89a6a936
- new GMVOLF toolchain, based on GCC 4.8.4, MVAPICH2 v2.0.1 · 2143edd9
  Danilo Guerrera authored Feb 11, 2015
  
  2143edd9
- support for MVAPICH2 vs 2.0.1 and a toolchain with GCC 4.8.4 · 4397a596
  Danilo Guerrera authored Feb 11, 2015
  
  4397a596
- Merge pull request #1394 from fgeorgatos/contrib_lmod_5.9 · d5991482
  Kenneth Hoste authored Feb 11, 2015
```
{tools} [GCC/4.8.x] Lmod/5.9 (REVIEW)
```
  d5991482
10 Feb, 2015 9 commits
- also edit text files in favor of Lmod/5.9.5-GCC-4.8.4 · c200b00a
  Fotis Georgatos authored Feb 10, 2015
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Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  c200b00a
- oh yes, add easyblock = 'ConfigureMake' for everybody · cf6d219a
  Fotis Georgatos authored Feb 10, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  cf6d219a
- Merge branch 'develop' of https://github.com/hpcugent/easybuild-easyconfigs into contrib_lmod_5.9 · 668d9242
  Fotis Georgatos authored Feb 10, 2015
  
  668d9242
- Merge pull request #1294 from fgeorgatos/contrib_goolf-1.6.20 · 261362a3
  Kenneth Hoste authored Feb 10, 2015
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[GCC/4.8.4] goolf/1.7.20 & gompi/1.7.20 (REVIEW)
```
  261362a3
- add Lmod/5.9 for GCC/4.8.[2,4] · e583665a
  Fotis Georgatos authored Feb 10, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  e583665a
- added toolchain intel-2015.02.eb · 0b384057
  Pablo Escobar Lopez authored Feb 10, 2015
  
  0b384057
- add M4 as builddep · 9b3aaff0
  Fotis Georgatos authored Feb 10, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  9b3aaff0
- update #1294 as per comments in PR · 3e2c4d52
  Fotis Georgatos authored Feb 10, 2015
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Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  3e2c4d52
- bump to libtool/2.4.5 · d8164690
  Fotis Georgatos authored Feb 10, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  d8164690