Commits · afbcef5e02f8a4b644be805a5e16c922d5dd837f · Computational Earth Sciences / easybuild-easyconfigs

04 Jul, 2013 14 commits
- add grib_api dep that was missing in #328 · afbcef5e
  Kenneth Hoste authored Jul 04, 2013
  
  afbcef5e
- Merge pull request #331 from fgeorgatos/contrib_ictce_5.5.0 · 6ae007d7
  Kenneth Hoste authored Jul 04, 2013
```
contrib VTune update9
```
  6ae007d7
- Merge pull request #301 from xaver42/HMMER-3.1b1 · 20de0c0b
  Kenneth Hoste authored Jul 04, 2013
```
added HMMER version 3.1b1
```
  20de0c0b
- Merge pull request #341 from boegel/trinity · 301bdb3b
  Kenneth Hoste authored Jul 04, 2013
```
add easyconfigs for new Trinity
```
  301bdb3b
- Merge pull request #345 from boegel/openblas_thread_fix · a81bc1bb
  Kenneth Hoste authored Jul 04, 2013
```
fix OpenBLAS make install step when USE_THREAD=0
```
  a81bc1bb
- minor style fixes · 5021bb8e
  Kenneth Hoste authored Jul 04, 2013
  
  5021bb8e
- Merge pull request #344 from boegel/contribute_cd-hit · d30b907d
  Kenneth Hoste authored Jul 04, 2013
```
add easyconfig for CD-HIT
```
  d30b907d
- fix filename, minor style fixes · 422742d8
  Kenneth Hoste authored Jul 04, 2013
  
  422742d8
- Merge pull request #309 from fgeorgatos/274_contrib_biodeps · 357ca151
  Kenneth Hoste authored Jul 03, 2013
```
274 contrib dependencies for life science applications: biodeps
```
  357ca151
- Merge pull request #22 from boegel/274_contrib_biodeps · bf3035be
  Fotis Georgatos authored Jul 03, 2013
```
fix versionsuffix in TopHat biodeps easyconfigs
```
  bf3035be
- fix versionsuffix in TopHat biodeps easyconfigs · 32bdb668
  Kenneth Hoste authored Jul 04, 2013
  
  32bdb668
- Merge pull request #21 from boegel/274_contrib_biodeps · 82f43712
  Fotis Georgatos authored Jul 03, 2013
```
add explicit dependencies such that  is populated as needed
```
  82f43712
- add explicit dependencies such that is populated as needed · 8299fea2
  Kenneth Hoste authored Jul 04, 2013
  
  8299fea2
- sync with the new easyconfig universe from upstream · 0228dd80
  Fotis Georgatos authored Jul 04, 2013
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  0228dd80
03 Jul, 2013 26 commits
- adjust moduleclass as per comment in #309 · 512abbfa
  Fotis Georgatos authored Jul 03, 2013
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  512abbfa
- fix homepage urls for biodeps*eb · aa89d01d
  Fotis Georgatos authored Jul 03, 2013
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  aa89d01d
- get rid of ismkl easyconfigs (ismkl toolchain not supported (yet?)) · d8623a7a
  Kenneth Hoste authored Jul 03, 2013
  
  d8623a7a
- add goolf easyconfig for latest Trinity · 075c2057
  Kenneth Hoste authored Jul 03, 2013
  
  075c2057
- Merge pull request #323 from fgeorgatos/contrib_more_5.3.0_EBs · bb7e6df9
  Kenneth Hoste authored Jul 03, 2013
```
add missing easyconfigs for ictce/5.3.0
```
  bb7e6df9
- Merge pull request #340 from boegel/contribute_blat · 0617262d
  Kenneth Hoste authored Jul 03, 2013
```
add BLAT easyconfig
```
  0617262d
- Merge pull request #339 from boegel/contribute_muscle · 46c2fd85
  Kenneth Hoste authored Jul 03, 2013
```
Contribute muscle
```
  46c2fd85
- style fixes in MUSCLE easyconfig · 5e19bbb6
  Kenneth Hoste authored Jul 03, 2013
  
  5e19bbb6
- Merge pull request #319 from georgets/contribute_bamtools · f8f6fef0
  Kenneth Hoste authored Jul 03, 2013
```
Contribute bamtools
```
  f8f6fef0
- Merge pull request #338 from boegel/contribute_bamtools · 65239f8e
  Kenneth Hoste authored Jul 03, 2013
```
add BamTools easyconfigs
```
  65239f8e
- remove sanity check paths spec from easyconfig, was added in easyblock · e690e5fc
  Kenneth Hoste authored Jul 03, 2013
  
  e690e5fc
- Merge pull request #20 from boegel/contrib_more_5.3.0_EBs · 350f1c2a
  Fotis Georgatos authored Jul 03, 2013
```
fix Boost source URL, in alignment with #309
```
  350f1c2a
- remove OpenSSL ictce-5.3.0 easyconfig, build is broken and patch doesn't work/apply · 15dff7e8
  Kenneth Hoste authored Jul 03, 2013
  
  15dff7e8
- fix easyconfigs based on bare and extended biodeps · c1208452
  Fotis Georgatos authored Jul 03, 2013
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  c1208452
- create a bare and an -extended version of biodeps · 80473b64
  Fotis Georgatos authored Jul 03, 2013
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  80473b64
- better decorate Perl easyconfigs · db955ef4
  Fotis Georgatos authored Jul 03, 2013
```
Signed-off-by: Fotis Georgatos <fotis.georgatos@uni.lu>
```
  db955ef4
- fix Boost source URL, in alignment with #309 · 46e88fd8
  Kenneth Hoste authored Jul 03, 2013
  
  46e88fd8
- fix space in file sanity check · 52f409c1
  Kenneth Hoste authored Jul 03, 2013
  
  52f409c1
- fix typo · cb90c352
  Kenneth Hoste authored Jul 03, 2013
  
  cb90c352
- add libpng dep, remove patch file (MACHTYPE is specified by easyblock now),... · 694edde3
  Kenneth Hoste authored Jul 03, 2013
```
add libpng dep, remove patch file (MACHTYPE is specified by easyblock now), make sanity check stricter, avoid hardcoding version in sources
```
  694edde3
- Merge pull request #2 from boegel/contribute_bamtools · 40b033fd
  georgets authored Jul 03, 2013
```
stricter sanity check for BamTools + style fixes
```
  40b033fd
- Fix conflicts · f448306f
  George Tsouloupas authored Jul 03, 2013
  
  f448306f
- Merge pull request #1 from boegel/contribute_muscle · 61620b95
  georgets authored Jul 03, 2013
```
use PackedBinary easyblock + style fixes
```
  61620b95
- stricter sanity check for BamTools + style fixes · c102dc64
  Kenneth Hoste authored Jul 03, 2013
  
  c102dc64
- Add version suffix and generalize easyconfig · 96558f58
  George Tsouloupas authored Jul 03, 2013
  
  96558f58
- specify PackedBinary easyblock for MUSCLE since dedicated MUSCLE easyblock was... · d1436cab
  Kenneth Hoste authored Jul 03, 2013
```
specify PackedBinary easyblock for MUSCLE since dedicated MUSCLE easyblock was removed in https://github.com/hpcugent/easybuild-easyblocks/pull/212 + style fixes
```
  d1436cab