Commits · f0106084e30a4b48de4479b7575a8bce7156db96 · Computational Earth Sciences / easybuild-easyconfigs

29 Feb, 2016 10 commits
- Merge pull request #2583 from verdurin/htseq-foss · f0106084
  Kenneth Hoste authored Feb 29, 2016
```
{bio} [foss,2015b] HTSeq-0.6.1p1
```
  f0106084
- Merge pull request #2581 from verdurin/bwa-0.7.13 · ed1e71ab
  Kenneth Hoste authored Feb 29, 2016
```
{bio}[foss-2015b] BWA 0.7.13
```
  ed1e71ab
- Merge pull request #2400 from gppezzi/new-crayebs · 20e678ef
  Kenneth Hoste authored Feb 29, 2016
```
Delete deprecated Cray toolchains and easyconfig files (for stable cray support)
```
  20e678ef
- Merge pull request #2544 from nathanhaigh/NextClip-1.3.1-foss-2015b · bdce6cd0
  Kenneth Hoste authored Feb 29, 2016
```
{bio}[foss/2015b] NextClip (REVIEW)
```
  bdce6cd0
- Merge pull request #616 from boegel/ATSAS · 1dccf3ff
  Kenneth Hoste authored Feb 29, 2016
```
add easyconfigs for ATSAS
```
  1dccf3ff
- no 'atsas' subdir in 'share' for older ATSAS versions · eeeeb1d6
  Kenneth Hoste authored Feb 29, 2016
  
  eeeeb1d6
- Merge pull request #2587 from verdurin/atsas-2.7.1 · eeedc6b2
  Kenneth Hoste authored Feb 29, 2016
```
{bio}[dummy] ATSAS-2.7.1-1
```
  eeedc6b2
- minor update in sanity_check_paths in ATSAS easyconfigs · 25fc417f
  Kenneth Hoste authored Feb 29, 2016
  
  25fc417f
- Merge branch 'develop' into ATSAS · 49c315d0
  Kenneth Hoste authored Feb 29, 2016
  
  49c315d0
- Do not patch standard /bin/bash shebang · 27e6de9c
  Nathan S. Watson-Haigh authored Feb 29, 2016
  
  27e6de9c
28 Feb, 2016 9 commits
- Update ATSAS PR to 2.7.1 for EL7 · c57b21df
  Adam Huffman authored Feb 28, 2016
  
  c57b21df
- Revert homepage to SourceForge, keep source url as GitHub · 9ccd7592
  Adam Huffman authored Feb 28, 2016
  
  9ccd7592
- Add sanity checks from intel version · 8dd7e4c9
  Adam Huffman authored Feb 28, 2016
  
  8dd7e4c9
- Merge pull request #2435 from gppezzi/cray-xc-06 · 0d6b6255
  Kenneth Hoste authored Feb 28, 2016
```
new CrayGNU files for 2015.06-XC 
```
  0d6b6255
- Merge pull request #2434 from gppezzi/cray-xc-11 · ecff4bb2
  Kenneth Hoste authored Feb 28, 2016
```
new CrayGNU files for 2015.11-XC
```
  ecff4bb2
- Add missing deps freetype and libpng · 345cfaa1
  Adam Huffman authored Feb 28, 2016
  
  345cfaa1
- Merge pull request #2574 from verdurin/plink-1.9 · 9532ae05
  Kenneth Hoste authored Feb 28, 2016
```
{bio}[foss-2015b] PLINK 1.07
```
  9532ae05
- Change moduleclass to bio · 23f91104
  Adam Huffman authored Feb 28, 2016
  
  23f91104
- Port HTSeq and matplotlib dep to foss-2015b · 881a1af7
  Adam Huffman authored Feb 28, 2016
  
  881a1af7
27 Feb, 2016 18 commits
- Remove superfluous comment · 3ab3bd7a
  Adam Huffman authored Feb 27, 2016
  
  3ab3bd7a
- Use platform-agnostic dynamic library extension · fec82c4c
  Adam Huffman authored Feb 27, 2016
  
  fec82c4c
- Add details about purpose and provenance of the patch · ce8f1d79
  Adam Huffman authored Feb 27, 2016
  
  ce8f1d79
- Merge pull request #2580 from verdurin/gromacs-5.1.2 · 78cb61bc
  Kenneth Hoste authored Feb 27, 2016
```
{bio}[foss-2015b] GROMACS 5.1.2
```
  78cb61bc
- Merge pull request #2554 from gppezzi/tc-without-craype · ccffbda7
  Kenneth Hoste authored Feb 27, 2016
```
removed PrgEnv version, craype and fftw from the new Cray* XC toolchain (REVIEW)
```
  ccffbda7
- Merge pull request #2582 from verdurin/bowtie2-2.2.7 · fd892d44
  Kenneth Hoste authored Feb 27, 2016
```
{bio}[foss-2015b] Bowtie2 2.2.7
```
  fd892d44
- Merge pull request #3 from boegel/new-crayebs · c08a004d
  Guilherme authored Feb 27, 2016
```
sync with develop & resolve conflicts
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  c08a004d
- Merge branch 'develop' into new-crayebs · 0d09fccf
  Kenneth Hoste authored Feb 27, 2016
  
  0d09fccf
- deleted deprecated .eb versions 5.x · 9922ff54
  perettig authored Feb 27, 2016
  
  9922ff54
- Merge pull request #1 from boegel/cray-xc-06 · e07b273c
  Guilherme authored Feb 27, 2016
```
fix FFTW lib/include path in configopts for GROMACS w/ CrayGNU
```
  e07b273c
- Merge pull request #2 from boegel/cray-xc-11 · e3394d1a
  Guilherme authored Feb 27, 2016
```
fix FFTW lib/include path in configopts for GROMACS w/ CrayGNU
```
  e3394d1a
- fix FFTW lib/include path in configopts for GROMACS w/ CrayGNU · e1f21535
  Kenneth Hoste authored Feb 27, 2016
  
  e1f21535
- fix FFTW lib/include path in configopts for GROMACS w/ CrayGNU · a17dc36d
  Kenneth Hoste authored Feb 27, 2016
  
  a17dc36d
- Fix typo · 9938fc7b
  Adam Huffman authored Feb 27, 2016
  
  9938fc7b
- Update Bowtie2 to 2.2.7 · 2537e3c0
  Adam Huffman authored Feb 27, 2016
  
  2537e3c0
- Update BWA to 0.7.13, including move to GitHub · 36ed24d7
  Adam Huffman authored Feb 27, 2016
  
  36ed24d7
- Add fixes for building with modern GCC · efbe383c
  Adam Huffman authored Feb 27, 2016
  
  efbe383c
- Update GROMACS to 5.1.2 for foss 2015b · c20c697f
  Adam Huffman authored Feb 26, 2016
  
  c20c697f
26 Feb, 2016 3 commits
- Cleaned up patch file. · 28295bfc
  Nathan S. Watson-Haigh authored Feb 27, 2016
```
1) Added comment and author.
2) Strip superfluous `-w` from perl shebang line.  - the scripts already use the `use warnings;` pragma.
```
  28295bfc
- Merge pull request #2577 from boegel/20160226125812_new_pr_MLC30 · ac7ce3ca
  Kenneth Hoste authored Feb 26, 2016
```
{tools}[dummy/dummy] MLC v3.0
```
  ac7ce3ca
- Merge pull request #2578 from boegel/bioc_metagenomeSeq · 8c5c8bb3
  Kenneth Hoste authored Feb 26, 2016
```
add metagenomeSeq in Bioconductor bundle
```
  8c5c8bb3