Commits · f6d1a8065cf1fe47cf01d3e828e67a3595835171 · Computational Earth Sciences / easybuild-easyconfigs

23 Feb, 2015 2 commits
- add custom sanity check in jemalloc easyconfig · f6d1a806
  Kenneth Hoste authored Feb 23, 2015
  
  f6d1a806
- add easyconfig for jemalloc · 3674daac
  Kenneth Hoste authored Feb 23, 2015
  
  3674daac
16 Feb, 2015 4 commits
- Merge pull request #1407 from boegel/worker · 47ddccc0
  Kenneth Hoste authored Feb 16, 2015
```
{tools}[dummy] worker v1.5.1 (REVIEW)
```
  47ddccc0
- add postinstallcmds in worker easyconfig file · 54ac2b49
  Kenneth Hoste authored Feb 16, 2015
  
  54ac2b49
- enable 'usempi' in worker easyconfig · 2b41f30c
  Kenneth Hoste authored Feb 16, 2015
  
  2b41f30c
- add easyconfig for worker framework · 71b420fc
  Kenneth Hoste authored Feb 16, 2015
  
  71b420fc
13 Feb, 2015 5 commits
- Merge pull request #1403 from a-mazur/pmw · 6277116d
  Kenneth Hoste authored Feb 13, 2015
```
{vis}[goolf-1.4.10-Python-2.7.5] Pmw 1.3.3 (REVIEW)
```
  6277116d
- removed the 'download/' string from the source_urls list · 96eadea7
  Adam Mazur authored Feb 13, 2015
  
  96eadea7
- Merge pull request #1392 from geimer/gcc48_cloog_inconsistencies · 9b96a893
  Kenneth Hoste authored Feb 13, 2015
```
Consistently use CLooG 0.18.0 for GCC 4.8 series
```
  9b96a893
- Merge pull request #1401 from pescobar/iomkl-2015.02 · 76edad40
  Kenneth Hoste authored Feb 13, 2015
```
{toolchain} [iomkl/2015.02] (REVIEW)
```
  76edad40
- Merge pull request #720 from fgeorgatos/contrib_rCUDA · 68e4b508
  Kenneth Hoste authored Feb 13, 2015
```
{system} [dummy] rCUDA 4.0.1 & 5.0 (REVIEW)
```
  68e4b508
12 Feb, 2015 29 commits
- rename rCUDA_5.0_linux_64_scientificLinux6.eb as rCUDA-5.0* · b6a9297b
  Fotis Georgatos authored Feb 12, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  b6a9297b
- pmw python library · 96060d2f
  Adam Mazur authored Feb 12, 2015
  
  96060d2f
- Merge pull request #1393 from pescobar/intel-2015.02 · ac0349f3
  Kenneth Hoste authored Feb 12, 2015
```
{toolchain} [intel/2015.02] (REVIEW)
```
  ac0349f3
- Merge pull request #1399 from boegel/GATK_rename · 69b8ff54
  Kenneth Hoste authored Feb 12, 2015
```
rename GenomeAnalysisTk easyconfigs to GATK
```
  69b8ff54
- added HPL-2.1-iomkl-2015.02.eb · 89ee72e0
  Pablo Escobar Lopez authored Feb 12, 2015
  
  89ee72e0
- Merge pull request #568 from fgeorgatos/contrib_mroe_bioinfo · 40414602
  Kenneth Hoste authored Feb 12, 2015
```
[goolf/1.4.10, ictce/5.3.0] FSA, PRANK, SMALT, Infernal and deps (WIP)
```
  40414602
- iomkl-2015.02 · 79231201
  Pablo Escobar Lopez authored Feb 12, 2015
  
  79231201
- Merge pull request #1282 from pescobar/cutadapt-newer · 028f237b
  Kenneth Hoste authored Feb 12, 2015
```
{bio} [foos/2014b] cutadapt (REVIEW)  
```
  028f237b
- Merge pull request #1400 from a-mazur/coot · cb3f4d11
  Kenneth Hoste authored Feb 12, 2015
```
{bio}[dummy] Coot 0.8.1 (Review)
```
  cb3f4d11
- Merge pull request #1167 from pescobar/emboss_java · cf87b577
  Kenneth Hoste authored Feb 12, 2015
```
added Java dependencies to EMBOSS easyconfigs
```
  cf87b577
- Merge branch 'contrib_rCUDA' of github.com:fgeorgatos/easybuild-easyconfigs into contrib_rCUDA · 5243a4bc
  Fotis Georgatos authored Feb 12, 2015
  
  5243a4bc
- renamed the easyconfig file name · 9eaecd9c
  Adam Mazur authored Feb 12, 2015
  
  9eaecd9c
- use Tarball easyblock for renamed GATK easyconfigs · ff0235fb
  Kenneth Hoste authored Feb 12, 2015
  
  ff0235fb
- really bugfix this MAFFT · 16e6b57e
  Fotis Georgatos authored Feb 12, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  16e6b57e
- bugfix filename of MAFFT for ictce/5.3.0 · 37e080af
  Fotis Georgatos authored Feb 12, 2015
```
Signed-off-by: Fotis Georgatos <fotis@cern.ch>
```
  37e080af
- fix name/sources in renamed GATK easyconfigs · a25e81ed
  Kenneth Hoste authored Feb 12, 2015
  
  a25e81ed
- Merge pull request #12 from boegel/emboss_java · 555ed342
  Pablo Escobar Lopez authored Feb 12, 2015
```
revert back to v1.7.0_10 for compatibility with HPCBIOS easyconfigs
```
  555ed342
- revert back to v1.7.0_10 for compatibility with HPCBIOS easyconfigs · a002266e
  Kenneth Hoste authored Feb 12, 2015
  
  a002266e
- easyconfig for Coot · 33217937
  Adam Mazur authored Feb 12, 2015
  
  33217937
- fix rename screwup · bec2794c
  Kenneth Hoste authored Feb 12, 2015
  
  bec2794c
- Merge pull request #1155 from pescobar/gatk · 9ff97ba0
  Kenneth Hoste authored Feb 12, 2015
```
GATK-3.3-0 with message on load (modloadmsg) for convenience
```
  9ff97ba0
- rename GenomeAnalysisTk easyconfigs to GATK · 22a27248
  Kenneth Hoste authored Feb 12, 2015
  
  22a27248
- style fixes · 0f558843
  pescobar authored Feb 12, 2015
  
  0f558843
- Merge branch 'develop' of https://github.com/hpcugent/easybuild-easyconfigs into emboss_java · 7eb81bda
  pescobar authored Feb 12, 2015
```
Conflicts:
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb
	easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb
```
  7eb81bda
- Merge pull request #1269 from pescobar/picard-1.119 · 30308fcf
  Kenneth Hoste authored Feb 12, 2015
```
{bio}[dummy] Picard 1.119 (REVIEW)
```
  30308fcf
- updated to latest intel-mpi · 949caa1d
  Pablo Escobar Lopez authored Feb 12, 2015
  
  949caa1d
- Merge pull request #1398 from pescobar/java_1.7u75 · f6116972
  Kenneth Hoste authored Feb 12, 2015
```
[lang]{dummy} Java 1.7.0_75 (REVIEW)
```
  f6116972
- updated picard to latest java · ad159720
  pescobar authored Feb 12, 2015
  
  ad159720
- added java 1.7.0_75 · e9db7b14
  pescobar authored Feb 12, 2015
  
  e9db7b14