fix source_urls for bsoft, cutadapt, EMBOSS, GnuTLS, ImageMagick, LibTIFF, Mercurial, netCDF, netCDF-Fortran, pigz, ROOT and Subversion

{lang}[iomkl/2017a] Python v2.7.12

fix source spec in PBSuite easyconfig

{bio}[intel/2016b] miRDeep2 v2.0.0.8

{bio}[intel/2016b] Bowtie v1.1.2

{bio}[intel/2016b] PBSuite v15.8.24

{bio}[intel/2016b] randfold v2.0.1

{lib}[intel/2016b] SpiecEasi v20160830

{lib}[intel/2016b] OOMPA v3.1.2

{data,math}[foss/2016b] PyTables v3.2.2, numexpr v2.6.1

OpenMPI-2.*: remove --with-threads configure option.

Added recipe for JasPer 2.0.10. Recent versions use CMake rather than…

remove numpy 1.11.1 easyconfig using Python 2.7.12 since Python installation already includes numpy 1.11.1

add PDF::API2 extension to Perl 5.24.0 easyconfigs + sync exts_list

{vis}[foss/2016b] OpenCV 3.1.0 (REVIEW)

{toolchain}[dummy/dummy] iomkl v2017a

fix check for Szip library in configure script for netCDF 4.1.3

{bio}[intel/2016b] BLASR v2.2

{tools}[intel/2016b] networkx v1.1

{bio}[intel/2016b] ViennaRNA v2.2.3

{numlib}[dummy/dummy] cuDNN v5.1