[Issue#81]: Fix for structure that were identified as functions passing vault and using new is_call_to_functions.

Reformulated is_call_to_function to use the vault information in our advantage. Now we need to pass the current routine as an argument to calls_to_functions.

Bugfixes to fix issues that appeared when including the sea-ice. Changes include: - Fix in calls_to_functions, dimension of contents, has_operations and calls_to_procedure.

Added a new command line "--additional-source" argument which can be used to apply the changes that are necessary to the preprocessed files also to a different source directory. It will allow to automatically transfer last minute fixes directly to the original source.

Fix in plot_result.py and temporary change in PrecisionAnalysis.py to skip making the result explorer.

Must get the accuracy test out of AutoRPE and provide it as an argument.

Must get the accuracy test out of AutoRPE and provide it as an argument.

Removed old way to manage exceptions, added new exception definitions and the exception solver(even it does not properly work)