Pisces1d-Genetic-Algorithm-Usage.md

@@ -20,19 +20,21 @@ autosubmit expid -H marenostrum4 -d Description
 ```
 and replace the conf files there with the ones [here](https://earth.bsc.es/gitlab/mfalls/genetic_algorithm_pisces1d/tree/master/conf). 
 
+Either way, you will obtain an experiment id of the form axxx.
+
 From here, you can either prepare the scripts via your local machine or via git.
 
 ## 2.1 Git (Recommended)
 
-Open expdef_xxxx.conf and
+Open expdef_axxx.conf and
 
 1. change PROJECT_TYPE from local to git
 2. change PROJECT_ORIGIN (line 43) to https://earth.bsc.es/gitlab/cp/genetic_algorithm_pisces1d.git
 3. change PROJECT_BRANCH to master
-4. Edit MEMBERS. This corresponds to the number of generations that you want the genetic algorithm to run for. This should always be of the form `fc[0000-xxxx]` (fc + 4 digits). 
+4. Edit MEMBERS. This corresponds to the number of generations that you want the genetic algorithm to run for. This should always be of the form `fc[0000-####]` (fc + 4 digits). 
 5. Edit NUMCHUNKS. This corresponds to the number of sets of parameters of each generation. Minimum 2, maximum 10,000.
 
-then autosubmit refresh xxxx
+then autosubmit refresh axxx
 
 Finally, edit the following configuration files: 
 * platforms.conf: Under marenostrum4, change USER to your HPC username (bsc32xxx).  
@@ -45,7 +47,7 @@ Finally, edit the following configuration files:
 * platforms.conf: Under marenostrum4, change USER to your HPC username (bsc32xxx).  
 
 * expdef.conf:
-1. Edit MEMBERS. This corresponds to the number of generations that you want the genetic algorithm to run for. This should always be of the form `fc[0000-xxxx]` (fc + 4 digits). 
+1. Edit MEMBERS. This corresponds to the number of generations that you want the genetic algorithm to run for. This should always be of the form `fc[0000-####]` (fc + 4 digits). 
 2. Edit NUMCHUNKS. This corresponds to the number of sets of parameters of each generation. Minimum 2, maximum 10,000.
 3. Ensure that PROJECT_TYPE = local
 4. Under local, change PROJECT_PATH to the directory where you downloaded the workflow scripts.
@@ -58,7 +60,7 @@ Here is the full list of input files that you need:
 *  The NEMO netcdf input files. Both 3x3 latxlon and full global files will work okay here. See step 1: Crop below
 *  A file called variables.csv, which contains the information on the parameters that you want to investigate. Any numerical parameter that is found in namelist_pisces_ref can be added here. 
 
-Once you have these, edit the variables and paths at the start of each script on the workflow:
+Once you have these, edit the variables and paths at the start of each script in axxx/proj/autosubmit/templates:
 
 1. Crop: If your input is already a 3x3 dimension, set crop=False. If working with a full file, set crop=True and set LAT and LON accordingly.  
 2. SCRHOME: Your scratch home directory.