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import os
import shutil
import tempfile
from unittest import TestCase
from mock import Mock
import mock
from earthdiagnostics.modelingrealm import ModelingRealms
from earthdiagnostics.frequency import Frequencies
from earthdiagnostics.data_convention import PrefaceConvention
class TestPrefaceConvention(TestCase):
def setUp(self):
self.tmp_dir = tempfile.mkdtemp()
os.mkdir(os.path.join(self.tmp_dir, 'expid'))
self.config = Mock()
self.config.data_dir = self.tmp_dir
self.config.experiment.experiment_name = 'experiment_name'
self.config.experiment.expid = 'expid'
self.config.experiment.institute = 'institute'
self.config.experiment.model = 'model'
self.config.experiment.member_count_start = 0
self.config.experiment.chunk_size = 1
self.config.experiment.calendar = 'standard'
self.config.cmor.activity = 'activity'
self.config.cmor.append_startdate = False
self.config.cmor.initialization_number = 1
self.config.cmor.version = 'version'
self.convention = PrefaceConvention('name', self.config)
def tearDown(self):
shutil.rmtree(self.tmp_dir)
def test_get_startdate_path(self):
self.assertEqual(self.convention.get_startdate_path('19900101'),
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S19900101'))
def test_experiment_name(self):
self.assertEqual(self.convention.experiment_name('19900101'),
'experiment_name')
def test_experiment_name_append(self):
self.config.cmor.append_startdate = True
self.assertEqual(self.convention.experiment_name('19900101'),
'experiment_nameS19900101')
def test_get_cmor_folder_path(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_cmor_folder_path('19900101', 1, ModelingRealms.ocean, 'var', 'mon',
None, cmor_var)
self.assertEqual(file_path,
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S19900101/mon/'
'ocean/var/r2i1p1/version'))
def test_get_cmor_folder_path_atmos(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_cmor_folder_path('19900101', 1, ModelingRealms.atmos, 'var', 'mon',
None, cmor_var)
self.assertEqual(file_path,
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S19900101/mon/'
'atmos/var/r2i1p1/version'))
def test_get_cmor_folder_path_custom_grid(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_cmor_folder_path('19900101', 1, ModelingRealms.ocean, 'var', 'mon',
'grid', cmor_var)
self.assertEqual(file_path,
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S19900101/mon/'
'ocean/var/grid/r2i1p1/version'))
def test_get_cmor_folder_path_no_cmor(self):
frequency = Mock()
frequency.__str__ = Mock()
frequency.__str__.return_value = 'mon'
frequency.frequency = 'mon'
file_path = self.convention.get_cmor_folder_path('19900101', 1, ModelingRealms.ocean, 'var',
Frequencies.monthly, None, None)
self.assertEqual(file_path,
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S19900101/mon/'
'ocean/var/r2i1p1/version'))
def test_get_file_path_no_version(self):
self.config.cmor.version = ''
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_cmor_folder_path('19900101', 1, ModelingRealms.ocean, 'var',
Frequencies.monthly, None, None)
self.assertEqual(file_path,
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S19900101/mon/'
'ocean/var/r2i1p1'))
def test_get_filename(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_file_name('19900101', 1, ModelingRealms.ocean, 'var', cmor_var,
Frequencies.monthly, 1, None, None, None)
self.assertEqual(file_path,
'var_Omon_model_experiment_name_S19900101_r2i1p1_199001_199001.nc')
def test_get_filename_daily(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_file_name('19900101', 1, ModelingRealms.ocean, 'var', cmor_var,
Frequencies.daily, 1,
None, None, None)
self.assertEqual(file_path,
'var_Omon_model_experiment_name_S19900101_r2i1p1_199001_199001.nc')
def test_get_filename_atmos(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Amon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_file_name('19900101', 1, ModelingRealms.atmos, 'var', cmor_var,
Frequencies.monthly, 1, None, None, None)
self.assertEqual(file_path,
'var_Amon_model_experiment_name_S19900101_r2i1p1_199001_199001.nc')
def test_get_filename_grid(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_file_name('19900101', 1, ModelingRealms.ocean, 'var', cmor_var,
Frequencies.monthly, 1, None, None, 'grid')
self.assertEqual(file_path,
'var_Omon_model_experiment_name_S19900101_r2i1p1_199001_199001.nc')
def test_get_filename_year(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_file_name('19900101', 1, ModelingRealms.ocean, 'var', cmor_var,
Frequencies.yearly, None, 1990, None, None)
self.assertEqual(file_path,
'var_Omon_model_experiment_name_S19900101_r2i1p1_1990.nc')
def test_get_filename_date_Str(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
file_path = self.convention.get_file_name('19900101', 1, ModelingRealms.ocean, 'var', cmor_var,
Frequencies.monthly, None, None, 'date_str', None)
self.assertEqual(file_path,
'var_Omon_model_experiment_name_S19900101_r2i1p1_date_str.nc')
def test_get_filename_no_date_info(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
with self.assertRaises(ValueError):
self.convention.get_file_name('19900101', 1, ModelingRealms.ocean, 'var', cmor_var,
Frequencies.monthly, None, None, None, None)
@mock.patch('os.path.isfile')
def test_is_cmorized(self, mock_is_file):
mock_is_file.return_value = True
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
self.config.var_manager.get_variable.return_value = cmor_var
self.config.cmor.min_cmorized_vars = 1
os.makedirs(os.path.join(self.tmp_dir,
'expid/cmorfiles/institute/experiment_name/S20000101/mon/'
'ocean/var/r2i1p1/version'))
self.assertTrue(self.convention.is_cmorized('20000101', 1, 1, ModelingRealms.ocean))
@mock.patch('os.path.isfile')
def test_is_not_cmorized(self, mock_is_file):
mock_is_file.return_value = False
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
self.config.var_manager.get_variable.return_value = cmor_var
self.config.cmor.min_cmorized_vars = 1
os.makedirs(os.path.join(self.tmp_dir,
'expid/cmorfiles/institute/experiment_name/S20000101/mon/ocean/var/'
'r2i1p1/version'))
self.assertFalse(self.convention.is_cmorized('20000101', 1, 1, ModelingRealms.ocean))
def test_is_cmorized_false_not_member_folder(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
self.config.var_manager.get_variable.return_value = cmor_var
self.config.cmor.min_cmorized_vars = 1
os.makedirs(os.path.join(self.tmp_dir,
'expid/cmorfiles/institute/experiment_name/S20000101/mon/ocean/var/'))
self.assertFalse(self.convention.is_cmorized('20000101', 1, 1, ModelingRealms.ocean))
@mock.patch('os.path.isfile')
def test_is_cmorized_not_enough_vars(self, mock_is_file):
mock_is_file.return_value = True
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
self.config.var_manager.get_variable.return_value = cmor_var
self.config.cmor.min_cmorized_vars = 2
os.makedirs(
os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S20000101/mon/ocean/var/'
'r2i1p1/version'))
self.assertFalse(self.convention.is_cmorized('20000101', 1, 1, ModelingRealms.ocean))
def test_is_cmorized_not_domain_folder(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
self.config.var_manager.get_variable.return_value = cmor_var
self.config.cmor.min_cmorized_vars = 2
os.makedirs(os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S20000101/mon/'
'r2i1p1/version'))
self.assertFalse(self.convention.is_cmorized('20000101', 1, 1, ModelingRealms.ocean))
def test_is_cmorized_not_freq_folder(self):
cmor_var = Mock()
omon = Mock()
omon.name = 'Omon'
cmor_var.get_table.return_value = omon
self.config.var_manager.get_variable.return_value = cmor_var
self.config.cmor.min_cmorized_vars = 2
os.makedirs(os.path.join(self.tmp_dir, 'expid/cmorfiles/institute/experiment_name/S20000101'))
self.assertFalse(self.convention.is_cmorized('20000101', 1, 1, ModelingRealms.ocean))
@mock.patch('earthdiagnostics.data_convention.PrefaceConvention.create_link')
def test_create_links(self, mock_create_link):
member_path = os.path.join(self.tmp_dir,
'expid/cmorfiles/institute/experiment_name/S20010101/mon/ocean/var/r2i1p1')
os.makedirs(member_path)
tempfile.mkstemp(dir=member_path)
self.convention.create_links('20010101', 1)
mock_create_link.assert_called()
@mock.patch('earthdiagnostics.data_convention.PrefaceConvention.create_link')
def test_create_links_member_not_found(self, mock_create_link):
member_path = os.path.join(self.tmp_dir,
'expid/cmorfiles/institute/experiment_name/S20010101/mon/ocean/var/r1i1p1')
os.makedirs(member_path)
tempfile.mkstemp(dir=member_path)
self.convention.create_links('20010101', 1)
mock_create_link.assert_not_called()
@mock.patch('earthdiagnostics.data_convention.PrefaceConvention.create_link')
def test_create_links_with_grid(self, mock_create_link):
member_path = os.path.join(self.tmp_dir,
'expid/cmorfiles/institute/experiment_name/S20010101/mon/ocean/var/'
'r2i1p1/grid')
os.makedirs(member_path)
tempfile.mkstemp(dir=member_path)
self.convention.create_links('20010101', 1)
mock_create_link.assert_called()