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# coding=utf-8
import os
from autosubmit.config.log import Log
from autosubmit.date.chunk_date_lib import parse_date, chunk_start_date, chunk_end_date
from earthdiagnostics.parser import Parser
class Config(object):
def __init__(self, path):
parser = Parser()
parser.optionxform = str
parser.read(path)
# Read diags config
self.scratch_dir = parser.get_option('DIAGNOSTICS', 'SCRATCH_DIR')
self.data_dir = parser.get_option('DIAGNOSTICS', 'DATA_DIR')
self.con_files = parser.get_option('DIAGNOSTICS', 'CON_FILES')
self.diags = parser.get_option('DIAGNOSTICS', 'DIAGS').lower()
self.frequency = parser.get_option('DIAGNOSTICS', 'FREQUENCY')
self.cdftools_path = parser.get_option('DIAGNOSTICS', 'CDFTOOLS_PATH')
self.max_cores = parser.get_int_option('DIAGNOSTICS', 'MAX_CORES', 100000)
self.restore_meshes = parser.get_bool_option('DIAGNOSTICS', 'RESTORE_MESHES', False)
# Read experiment config
self.experiment = ExperimentConfig(parser)
# Read aliases
self._aliases = dict()
if parser.has_section('ALIAS'):
for option in parser.options('ALIAS'):
self._aliases[option.lower()] = parser.get_option('ALIAS', option).lower().split()
Log.debug('Preparing command list')
commands = self.diags.split()
self._real_commands = list()
for command in commands:
if command in self._aliases:
added_commands = self._aliases[command]
Log.info('Changing alias {0} for {1}', command, ' '.join(added_commands))
for add_command in added_commands:
self._real_commands.append(add_command)
else:
self._real_commands.append(command)
Log.debug('Command list ready ')
self.scratch_dir = os.path.join(self.scratch_dir, 'diags', self.experiment.expid)
self.cmor = CMORConfig(parser)
def get_commands(self):
return self._real_commands
class CMORConfig(object):
def __init__(self, parser):
self.force = parser.get_bool_option('CMOR', 'FORCE', False)
self.ocean = parser.get_bool_option('CMOR', 'OCEAN_FILES', True)
self.atmosphere = parser.get_bool_option('CMOR', 'ATMOSPHERE_FILES', True)
self.associated_experiment = parser.get_option('CMOR', 'ASSOCIATED_EXPERIMENT', 'to be filled')
self.associated_model = parser.get_option('CMOR', 'ASSOCIATED_MODEL', 'to be filled')
self.initialization_description = parser.get_option('CMOR', 'INITIALIZATION_DESCRIPTION', 'to be filled')
self.initialization_method = parser.get_option('CMOR', 'INITIALIZATION_METHOD', '1')
self.physics_description = parser.get_option('CMOR', 'PHYSICS_DESCRIPTION', 'to be filled')
self.physics_version = parser.get_option('CMOR', 'PHYSICS_VERSION', '1')
self.source = parser.get_option('CMOR', 'SOURCE', 'to be filled')
self.add_name = parser.get_bool_option('CMOR', 'ADD_NAME')
self.add_startdate = parser.get_bool_option('CMOR', 'ADD_STARTDATE')
self._var_hourly = self._parse_variables(parser.get_option('CMOR', 'ATMOS_HOURLY_VARS', ''))
self._var_daily = self._parse_variables(parser.get_option('CMOR', 'ATMOS_DAILY_VARS', ''))
self._var_monthly = self._parse_variables(parser.get_option('CMOR', 'ATMOS_MONTHLY_VARS', ''))
def _parse_variables(self, raw_string):
variables = dict()
if raw_string:
splitted = raw_string.split(',')
for var_section in splitted:
splitted_var = var_section.split(':')
if len(splitted_var) == 1:
levels = None
else:
levels = ','.join(map(str, CMORConfig._parse_levels(splitted_var[1:])))
variables[int(splitted_var[0])] = levels
return variables
@staticmethod
def _parse_levels(levels_splitted):
if len(levels_splitted) == 1:
return map(int, levels_splitted[0].split('-'))
start = int(levels_splitted[0])
end = int(levels_splitted[1])
if len(levels_splitted) == 3:
step = int(levels_splitted[2])
else:
step = 1
return range(start, end, step)
class ExperimentConfig(object):
"""
Encapsulates all chunk related tasks
:param parser: parser for the config file
:type parser: Parser
"""
def __init__(self, parser):
self.institute = parser.get_option('EXPERIMENT', 'INSTITUTE')
self.expid = parser.get_option('EXPERIMENT', 'EXPID')
self.experiment_name = parser.get_option('EXPERIMENT', 'NAME', self.expid)
members = list()
for member in parser.get_option('EXPERIMENT', 'MEMBERS').split():
members.append(int(member))
member_digits = parser.get_int_option('EXPERIMENT', 'MEMBER_DIGITS', 1)
startdates = parser.get_option('EXPERIMENT', 'STARTDATES').split()
chunk_size = parser.get_int_option('EXPERIMENT', 'CHUNK_SIZE')
chunks = parser.get_int_option('EXPERIMENT', 'CHUNKS')
calendar = parser.get_option('EXPERIMENT', 'CALENDAR', 'standard')
self.model = parser.get_option('EXPERIMENT', 'MODEL')
self.nfrp = parser.get_int_option('EXPERIMENT', 'NFRP')
self.model_version = parser.get_option('EXPERIMENT', 'MODEL_VERSION')
self.startdates = startdates
self.members = members
self.num_chunks = chunks
self.chunk_size = chunk_size
self.member_digits = member_digits
self.calendar = calendar
def get_chunk_list(self):
"""
Return a list with all the chunks
:return: List containing tuples of startdate, member and chunk
:rtype: tuple[str, int, int]
"""
chunk_list = list()
for startdate in self.startdates:
for member in self.members:
for chunk in range(1, self.num_chunks + 1):
chunk_list.append((startdate, member, chunk))
return chunk_list
def get_member_list(self):
"""
Return a list with all the members
:return: List containing tuples of startdate and member
:rtype: tuple[str, int, int]
"""
member_list = list()
for startdate in self.startdates:
for member in self.members:
member_list.append((startdate, member))
return member_list
def get_year_chunks(self, startdate, year):
"""
Get the list of chunks containing timesteps from the given year
:param startdate: startdate to use
:type startdate: str
:param year: reference year
:type year: int
:return: list of chunks containing data from the given year
:rtype: list[int]
"""
date = parse_date(startdate)
chunks = list()
for chunk in range(1, self.num_chunks + 1):
chunk_start = chunk_start_date(date, chunk, self.chunk_size, 'month', self.calendar)
if chunk_start.year > year:
break
elif chunk_start.year == year or chunk_end_date(chunk_start, self.chunk_size, 'month',
self.calendar).year == year:
chunks.append(chunk)
return chunks
def get_full_years(self, startdate):
"""
Returns the list of full years that are in the given startdate
:param startdate: startdate to use
:type startdate: str
:return: list of full years
:rtype: list[int]
"""
chunks_per_year = 12 / self.chunk_size
date = parse_date(startdate)
first_january = 0
first_year = date.year
if date.month != 1:
month = date.month
first_year += 1
while month + self.chunk_size < 12:
month += self.chunk_size
first_january += 1
years = list()
for chunk in range(first_january, self.num_chunks - chunks_per_year, chunks_per_year):
years.append(first_year)
first_year += 1
return years
def get_member_str(self, member):
"""
Returns the member name for a given member number.
:param member: member's number
:type member: int
:return: member's name
:rtype: str
"""
return 'fc{0}'.format(str(member).zfill(self.member_digits))