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#!/bin/bash
set -evx
export PATH="/cfu/software/cdftools2.1:$PATH"
pabretonniere
committed
msg='Your experiment crashed! Your workdir \($WORKDIR\) will be kept for one week from now and then deleted'
trap "echo $msg ; rm -rf $WORKDIR | at now + 7 days ; exit" SIGINT SIGHUP SIGTERM SIGSEGV SIGKILL EXIT
#################################
#### User Defined Funtions ####
#################################
# check if args are ok and read options in config_file
if [ $# -ne 1 ] ; then
echo
echo "USAGE: config_file "
echo "For example: ./ocean_pp.new.bash /home/$user/cfu_git/autosubmit/pp/ocean/config_file "
echo
exit 1
fi
config_file=$1
. ${config_file}
list_files='grid_T'
if [[ ${listpost[@]} =~ "psi" ]] || [[ ${listpost[@]} =~ "moc" ]] ; then
echo "The list of diags require grid_V[U]"
list_files=$(echo ${list_files} grid_U grid_V)
fi
if [[ ${listpost[@]} =~ "ice" ]]; then
echo "The list of diags contains ice"
list_files=$(echo ${list_files} icemod)
fi
###############################################################################
#
# moc needs to be computed before max_moc and area_moc
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*moc*} != ${listpost[@]} ]] || [[ ${listpost[@]##*stc*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#moc} != ${listpost[@]:1} ]] ; then
listpost=( 'moc' "${listpost[@]#moc}" )
fi
fi
#
# psi needs to be computed before gyres
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*gyres*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#psi} != ${listpost[@]:1} ]] ; then
listpost=( 'psi' "${listpost[@]#psi}" )
fi
fi
#
# oce raw outputs need to be extracted before convection option
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*convection*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#ext_raw_oce} != ${listpost[@]:1} ]] ; then
listpost=( 'ext_raw_oce' "${listpost[@]#ext_raw_oce}" )
fi
fi
#
# 3d interpolation required before average T sections over longitudes
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##TSec_ave*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#3dtemp} != ${listpost[@]:1} ]] ; then
listpost=( '3dtemp' "${listpost[@]#3dtemp}" )
warning_T=.true.
fi
fi
if [[ ${listpost[@]##SSec_ave*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#3dsal} != ${listpost[@]:1} ]] ; then
listpost=( '3dsal' "${listpost[@]#3dsal}" )
warning_S=.true.
fi
fi
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? If your new diagnostic relies on an already
# existing diagnotics, you might need similar lignes to the above ones
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
#
# Preparing WORKDIR and set of available functions
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pabretonniere
committed
export WORKDIR=/scratch/${USER}/tmp/post_ocean/$$
mkdir -p $WORKDIR
cd $WORKDIR
source $PATHCOMMONOCEANDIAG/common_ocean_post.txt
#
# Interval of lead months be post-processed
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
case $expid in
'nemovar_s4'|'nemovar_combine') moni=09 ; syeari=1957 ; syearf=1957 ; insdate=1 ; typeoutput='MMO' ; NEMOVERSION='nemovar_O1L42' ;;
'glorys2v1') moni=01 ; syeari=1993 ; syearf=1993 ; insdate=1 ; typeoutput='MMO' ;;
esac
case $expid in
'nemovar_s4') rootout='/cfunas/exp/ECMWF/NEMOVAR_S4/monthly_mean' ;;
'nemovar_combine') rootout='/cfunas/exp/ECMWF/NEMOVAR_COMBINE/monthly_mean' ;;
'glorys2v1') rootout='/cfunas/exp/MERCATOR/GLORYS2V1/monthly_mean';;
esac
if [[ ${listpost[@]##max_moc} != ${listpost[@]} ]] || [[ -z "$ltimef" ]] || [[ -z "$ltime0" ]] ; then
if [[ ! -z "$year0" ]] && [[ ! -z "$yearf" ]] ; then
ltime0=$(((${year0}-${syeari})*12+1))
ltimef=$(((${yearf}-${syeari}+1-(10#$moni+10)/12)*12))
fi
fi
mon0=$(( (10#$moni+$ltime0-2)%12+1 ))
monf=$(( (10#$moni+$ltimef-2)%12+1 ))
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#
# Check on the consistency between the chunk length and the leadtimes
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ $((($ltimef-$ltime0+1)%$chunklen)) != 0 || $((($ltime0-1)%$chunklen)) != 0 ]] ; then
echo "This a safety stop because we think you might have made a mistake in your configuration file"
echo "Unless you have run your experiment with a variable chunk length, you should have"
echo "a number of leadtimes to post-process that is a multiple of the chunken and the first"
echo "leadtime should be right after the end of a chunk"
echo "If you have run your experiment with a variable chunk length, please remove l.85-93 of ocean_pp.bash"
exit 1
fi
Virginie Guemas
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# Loop on start dates
# ~~~~~~~~~~~~~~~~~~~~~
for ((yeari=$syeari;yeari<=$syearf;yeari=$(($yeari+intsdate)))) ; do
#
# Interval of years to be post-processed
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
year0=$(($yeari+(10#$moni+$ltime0-2)/12))
yearf=$(($yeari+(10#$moni+$ltimef-2)/12))
for memb in ${listmemb[@]} ; do
#
# Fetching the files on cfunas
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
case $expid in
'nemovar_s4'|'nemovar_combine') get_nemovar ${expid} ${memb} ${year0} ${yearf} ${mon0} ${monf} "${list_files}"
'glorys2v1') get_glorys ${year0} ${yearf} ${mon0} ${monf} ;;
*) freqout=${rootout:${#rootout}-12} ; freqout=${freqout/_mean} ; freqout=${freqout/*\/}
get_diagsMMO ${yeari}${moni}01 ${expid} ${memb} $ltime0 $ltimef $chunklen $mod $typeoutput $freqout "${list_files}"
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esac
#
# Ready for the post-processing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
for post in ${listpost[@]} ; do
case $post in
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? Enter its call right here under the flag chosen
# Remember to consider both 'MMO' and 'diags' cases
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
'ext_raw_oce')
if [[ $typeoutput == 'MMO' ]] ; then
lstvars=`cdo showvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc`
if [[ $raw_vars_ocean == '' ]] ; then
lstext=`echo $lstvars | sed s/\ /,/g`
else
if [[ $raw_vars_ocean == 'default' ]] ; then
lstextvar=( 'sosstsst' 'sosaline' 'somixhgt' 'somxl010' )
lstext=''
for varex in ${lstextvar[@]} ; do
if [[ ${lstvars/${varex}/} != ${lstvars} ]] ; then
lstext=`echo ${lstext} ${varex}|sed s/\ /,/g`
fi
done
else
lstext=`echo ${raw_vars_ocean[@]} |sed s/\ /,/g`
fi
fi
ncks -O -v ${lstext} grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
# ncks -O -v ${lstext[@]} grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'ext_raw_ice')
if [[ $typeoutput == 'MMO' ]] ; then
lstvars=`cdo showvar icemod_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc`
if [[ $raw_vars_ice == '' ]] ; then
lstext=`echo $lstvars | sed s/\ /,/g`
else
if [[ $raw_vars_ice == 'default' ]] ; then
lstextvar=( 'isnowthi' 'iicethic' 'ileadfra' 'iicetemp' 'ice_pres' )
lstext=''
for varex in ${lstextvar[@]} ; do
if [[ ${lstvars/${varex}/} != ${lstvars} ]] ; then
lstext=`echo ${lstext} ${varex}|sed s/\ /,/g`
fi
done
else
lstext=`echo $raw_vars_ice |sed s/\ /,/g`
fi
fi
ncks -O -v ${lstext} icemod_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ice_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'heat_sal_mxl')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f heat_sal_mxl_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
heat_sal_mxl grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc heat_sal_mxl_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'psi')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
psi grid_U_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc grid_V_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'gyres')
gyres psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $NEMOVERSION gyres_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_300-5400m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeansal grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 300 5400 sal_300-5400m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
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if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeansal grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0 300 sal_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'ohc_specified_layer')
if [ ! -f ohc_2d_avg_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
ohc_specified_layer ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 300.0 ohc_2d_avg_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ohc_specified_layer ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 300.0 800.0 ohc_2d_avg_300-800m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'vert_Tsections')
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
for coord in 0 45 -45 -30 180 80
do
if [[ $coord == '0' ]] || [[ $coord == '45' ]] || [[ $coord == '-45' ]] ; then
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=S || direction=N
z_m=Z
else
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=W || direction=E
z_m=M
fi
coord=`echo $coord | sed -e s/-//g`
[ ! -f temp_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cutsection ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper $z_m $coord temp_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
done
;;
'vert_Ssections')
if [[ $typeoutput == 'MMO' ]] ; then
pref='grid_T'
for coord in 0 45 -45 -30 180 80
do
if [[ $coord == '0' ]] || [[ $coord == '45' ]] || [[ $coord == '-45' ]] ; then
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=S || direction=N
z_m=Z
else
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=W || direction=E
z_m=M
fi
coord=`echo $coord | sed -e s/-//g`
[ ! -f sal_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cutsection ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline $z_m $coord sal_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
done
fi
;;
'3dtemp')
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
if [ ! -f regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]; then
echo " Warning: you are about to perform a 3d interpolation "
[ $warning_T ] && echo "(because you asked for cross sections calculations)"
echo "this might take time to complete (~days), be sure you really need/want to do this..."
interp3d ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'3dsal')
if [[ $typeoutput == 'MMO' ]] ; then
pref='grid_T'
if [ ! -f regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]; then
echo " Warning: you are about to perform a 3d interpolation "
[ $warning_S ] && echo "(because you asked for cross sections calculations)"
echo "this might take time to complete (~days), be sure you really need/want to do this..."
interp3d ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'TSec_ave190-220E')
[ ! -f TSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cdo zonmean -sellonlatbox,190,220,-90,90 regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc TSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'SSec_ave190-220E')
if [[ $typeoutput == 'MMO' ]] ; then
[ ! -f SSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cdo zonmean -sellonlatbox,190,220,-90,90 regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc SSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'moc')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
moc grid_V_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'max_moc')
max_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 38 50 500 2000 max_moc_38N50N_500m-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
max_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 40 40 0 10000 max_moc_40N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'stc')
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 25.0 NPac_stc_0N25N_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0 zomsfpac
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc -25.0 0.0 SPac_stc_25S0S_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0 zomsfpac
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 25.0 NAtl_stc_0N25N_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc -25.0 0.0 SAtl_stc_25S0S_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0
;;
'area_moc')
if [ ! -f moc_40N55N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 40.0 55.0 moc_40N55N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
if [ ! -f moc_30N40N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 30.0 40.0 moc_30N40N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'convection')
convection oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $NEMOVERSION convection_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'siasiesiv' )
if [ ! -f siasiesiv_N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]||[ ! -f siasiesiv_S_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then #check if ? instead of N or S works
case $typeoutput in
'MMO' ) pref='icemod' ;;
'diags') pref='ice' ;;
esac
siasiesiv ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc tmp.nc
mv ice_N_tmp.nc siasiesiv_N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv ice_S_tmp.nc siasiesiv_S_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
esac
case `echo $post|cut -c$((${#post}-2))-${#post}` in
'ohc')
case `echo $post | cut -c1` in
'x') kmin=0 ; kmax=0 ; start=2 ; mxl=1 ;;
'l') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmin=25 ; kmax=42 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmin=23 ; kmax=46 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmin=45; kmax=75;;
esac
;;
'm') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmin=21 ; kmax=24 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmin=18 ; kmax=22 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmin=35; kmax=44;;
esac
;;
'u') kmin=1 ; start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmax=20 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmax=17 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmax=34;;
esac
;;
*) kmin="" ; kmax="" ; start=1 ; mxl=0 ;;
esac
case `echo $post | cut -c${start}-$((start+3))` in
'ohc') basin='Glob' ;;
*) basin=`echo $post | cut -c${start}-$((start+3))`
esac
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags')
pref='t3d'
ncks -A -v somxl010,somixhgt oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc t3d_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
esac
ohc ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc heatc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $basin $mxl $kmin $kmax
;;
esac
done
# Removing the raw output from this start dates and this member
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
clean_diagsMMO ${yeari}${moni}01 ${expid} ${memb} $ltime0 $ltimef $typeoutput "${list_files}"
done
# Prepare storage : choose output directory and file name
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
for post in ${listpost[@]} ; do
case $post in
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? Enter the output directory and the prefix
# or your(s) output files under the flag chosen
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
'area_moc') dirout='moc'; files=('moc_40N55N_1-2km' 'moc_30N40N_1-2km') ;;
'stc') dirout='moc' ; files=( 'NPac_stc_0N25N_0-200m' 'SPac_stc_25S0S_0-200m' 'NAtl_stc_0N25N_0-200m' 'SAtl_stc_25S0S_0-200m' ) ;;
'max_moc') dirout='moc' ; files=('max_moc_38N50N_500m-2km' 'max_moc_40N' ) ;;
'siasiesiv' ) dirout='ice' ; files=('siasiesiv_N' 'siasiesiv_S') ;;
'moc') dirout='moc' ; files=('moc') ;;
'convection') dirout='moc' ; files=('convection') ;;
# 'ext_raw_ice') dirout='ice' ; files=('ice_raw') ;;
# 'ext_raw_oce') dirout='oce_raw' ; files=('oce_raw') ;;
'ext_raw_ice') dirout='ice' ; files=('ice') ;;
'ext_raw_oce') dirout='oce' ; files=('oce') ;;
'heat_sal_mxl') dirout='heatc' ; files=('heat_sal_mxl') ;;
'psi') dirout='psi' ; files=('psi') ;;
'gyres') dirout='psi' ; files=('gyres') ;;
'usalc') dirout='saltc' ; files=('sal_0-300m') ;;
'lmsalc') dirout='saltc' ; files=('sal_300-5400m') ;;
'ohc_specified_layer') dirout='heatc' ; files=('ohc_2d_avg_0-300m' 'ohc_2d_avg_300-800m') ;;
'vert_Tsections') dirout='sections' ; files=('temp_0N' 'temp_45N' 'temp_45S' 'temp_30W' 'temp_80E' 'temp_180E') ;;
'vert_Ssections') dirout='sections' ; files=('sal_0N' 'sal_45N' 'sal_45S' 'sal_30W' 'sal_80E' 'sal_180E') ;;
'3dtemp') dirout='InterpT' ; files=('regular3dT') ;;
'3dsal') dirout='InterpS' ; files=('regular3dS') ;;
'TSec_ave190-220E') dirout='sections' ; files=('TSec_ave190-220E') ;;
'SSec_ave190-220E') dirout='sections' ; files=('SSec_ave190-220E') ;;
esac
case `echo $post|cut -c$((${#post}-2))-${#post}` in
'ohc')
dirout='heatc'
file='heatc'
case `echo $post | cut -c1` in
'x') mxl=1 ; start=2 ;;
'l') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='800-5350_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='855-5875_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='857-5902_'${file};;
esac
;;
'm') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='373-657_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='382-735_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='301-773_'${file};;
esac
;;
'u') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='0-315_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='0-322_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='0-271_'${file};;
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
esac
;;
*) mxl=0 ; start=1 ;;
esac
case `echo $post | cut -c${start}-$((start+3))` in
'NAtl') file='NAtl_10N65N_'${file} ;;
'TAtl') file='TAtl_30S30N_'${file};;
'NPac') file='NPac_10N70N_'${file} ;;
'TPac') file='TPac_30S30N_'${file} ;;
'Arct') file='Arc_65N90N_'${file} ;;
'Anta') file='Ant_90S60S_'${file} ;;
'TInd') file='TInd_30S30N_'${file} ;;
esac
if [[ $mxl == 1 ]] ; then
file='mxl_'$file
fi
files=( $file )
esac
pathout=${rootout}/${dirout}
mkdir -m ug+w -m o-w -p $pathout
for file in ${files[@]} ; do
prefix=${file}_${expid}_${yeari}${moni}01_fc
lsmbso=0-${listmemb[${#listmemb[@]}-1]}
#
# Merging the post-processed members together and with the previous members if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lsyrsh=${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
lsmbsh=${listmemb[0]}-${listmemb[${#listmemb[@]}-1]}
lsmbsb=0-$((${listmemb[0]}-1))
if [ -e ${pathout}/${prefix}${lsmbsb}_${lsyrsh} ] ; then
cp ${pathout}/${prefix}${lsmbsb}_${lsyrsh} .
lsmbsh=0-${listmemb[${#listmemb[@]}-1]}
gather_memb ${prefix} _${lsyrsh} ${prefix}${lsmbsh}_${lsyrsh}
for jmemb in ${listmemb[@]} ; do
rm -f ${prefix}${jmemb}_${lsyrsh}
done
#
# Concatenating the result with the previous years if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? If your diagnostic provides yearly output
# you need to use the concat option rather than the ncrcat one below.
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
lsyrsb=${yeari}${moni}_$((year0-(1-(10#$moni+10)/12)))$(printf "%02d" $(((mon0-13)%12+12)) ).nc
lsyrso=${yeari}${moni}_${yearf}$(printf "%02d" ${monf}).nc
if [ -e ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ] ; then
case $post in
'max_moc' ) concat ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrsh} $(printf "%02d" ${monf}) ${prefix}${lsmbsh}_${lsyrso} ;;
*) ncrcat -O ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrsh} ${prefix}${lsmbsh}_${lsyrso} ;;
esac
else
lsyrso=$lsyrsh
fi
#
# Merging the result with the previous members if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ $lsyrsh != $lsyrso ]] && [[ -e ${pathout}/${prefix}${lsmbsb}_${lsyrso} ]] ; then
cp ${pathout}/${prefix}${lsmbsb}_${lsyrso} .
gather_memb ${prefix} _${lsyrso} ${prefix}${lsmbso}_${lsyrso}
else
lsmbso=$lsmbsh
fi
#
# Storing and cleaning
# ~~~~~~~~~~~~~~~~~~~~~
cp ${prefix}${lsmbso}_${lsyrso} ${pathout}/. || { if [ -e ${pathout}/${prefix}${lsmbso}_${lsyrso} ];
then
echo "${prefix}${lsmbso}_${lsyrso} already exists in ${pathout}"
sleep 5
else
echo " problem writing file in ${pathout} directory"
exit
fi
}
rm -f ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrso} ${prefix}${lsmbsb}_${lsyrso} ${pathout}/${prefix}${lsmbsb}_${lsyrso} ${prefix}${lsmbso}_${lsyrso} ${pathout}/${prefix}${lsmbsb}_${lsyrsh} ${prefix}${lsmbsb}_${lsyrsh}
done
done
done
rm -rf $WORKDIR