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Duplicate inst/sample_data/ and inst/config/ from s2dverification develop-Apply branch

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# s2dverification configuration file
#
# Check ?ConfigFileOpen after loading s2dverification for detailed
# documentation on this configuration file.
#############
!!definitions
#############
# Mandatory defaults
DEFAULT_EXP_MAIN_PATH = /es*/exp/*/$EXP_NAME$/
DEFAULT_EXP_FILE_PATH = $STORE_FREQ$$SUFFIX$/$VAR_NAME$$FILE_GRID$*/$EXP_FILE$
DEFAULT_OBS_MAIN_PATH = /es*/obs/*/$OBS_NAME$/
DEFAULT_OBS_FILE_PATH = $STORE_FREQ$$SUFFIX$/$VAR_NAME$*/$OBS_FILE$
DEFAULT_NC_VAR_NAME = $VAR_NAME$
DEFAULT_SUFFIX = _mean
DEFAULT_VAR_MIN = -1e19
DEFAULT_VAR_MAX = 1e19
DEFAULT_DIM_NAME_LONGITUDES = longitude
DEFAULT_DIM_NAME_LATITUDES = latitude
DEFAULT_DIM_NAME_MEMBERS = ensemble
# Helper variables
EXP_FILE = $VAR_NAME$_*$START_DATE$*.nc
OBS_FILE = $VAR_NAME$_$YEAR$$MONTH$*.nc
RECON_LIST = (20thcr_v2|copernicus012|ds083.2|ecco|era40|era40-erainterim|eraclim|erainterim|erainterim-lores|eraland|gecco_v2|gfs|glorys2_v1|glorys2_v3|glosea5|ishii-kimoto|jra55|merra|merra_v2|ncep-reanalysis|oaflux|oi_v2|orap5|piomas|seaice-lim2|sst|tropflux|nemovar_system4|era5)
# Defaults for extra variables from Load
DEFAULT_FILE_GRID =
######################
!!table of experiments
######################
#exp_name, var_name[, exp_main_path[, exp_file_path[, nc_var_name[, suffix[, var_min[, var_max]]]]]]
# By default, any pair (var, exp) is associated to the default values
# As experiment name, the user is expected to provide model/expid
.*, .*, *, *, *, *, *, *
# But we also want to allow that they provide expid only
.*/.*, .*, /es*/exp/$EXP_NAME$/, *, *, *, *, *
# If the requested experiment is in the list of reconstructions, it will be fetched in recon
$RECON_LIST$, .*, /es*/recon/*/$EXP_NAME$/, *, *, *, *, *
.*/$RECON_LIST$, .*, /es*/recon/$EXP_NAME$/, *, *, *, *, *
# If the variable is of the kind varname_whatever it will be fetched in the monthly/daily_statistics instead of _mean
.*, .*_.*, *, *, *, _statistics, *, *
# Ocean variables follow special conventions
.*, psi, *, *, sobarstf, *, *, *
.*, .*heatc, *, $STORE_FREQ$_mean/heatc/$EXP_FILE$, thc, *, *, *
.*, moc_.*, *, $STORE_FREQ$_mean/moc/$EXP_FILE$, zomsfatl, *, *, *
.*, max_moc_.*, *, $STORE_FREQ$_mean/moc/$EXP_FILE$, maxmoc, *, *, *
.*, .*Pac_stc_.*, *, $STORE_FREQ$_mean/moc/$EXP_FILE$, zomsfpac, *, *, *
.*, .*Atl_stc_.*, *, $STORE_FREQ$_mean/moc/$EXP_FILE$, zomsfatl, *, *, *
.*, sal_.*, *, $STORE_FREQ$_mean/saltc/$EXP_FILE$, vertmeansal, *, *, *
.*, temp_.*, *, $STORE_FREQ$_mean/sections/$EXP_FILE$, votemper, *, *, *
.*, sian, *, $STORE_FREQ$$SUFFIX$/ice/siasiesiv_N*$START_DATE$*.nc, sia, *, *, *
.*, sien, *, $STORE_FREQ$$SUFFIX$/ice/siasiesiv_N*$START_DATE$*.nc, sie, *, *, *
.*, sivn, *, $STORE_FREQ$$SUFFIX$/ice/siasiesiv_N*$START_DATE$*.nc, siv, *, *, *
.*, sias, *, $STORE_FREQ$$SUFFIX$/ice/siasiesiv_S*$START_DATE$*.nc, sia, *, *, *
.*, sies, *, $STORE_FREQ$$SUFFIX$/ice/siasiesiv_S*$START_DATE$*.nc, sie, *, *, *
.*, sivs, *, $STORE_FREQ$$SUFFIX$/ice/siasiesiv_S*$START_DATE$*.nc, siv, *, *, *
.*, sia_.*, *, $STORE_FREQ$_mean/ice/sia_Arcticreg1*$START_DATE$*.nc, *, *, *, *
.*, sie_.*, *, $STORE_FREQ$_mean/ice/sie_Arcticreg1*$START_DATE$*.nc, *, *, *, *
.*, siv_.*, *, $STORE_FREQ$_mean/ice/siv_Arcticreg1*$START_DATE$*.nc, *, *, *, *
#######################
!!table of observations
#######################
#obs_name, var_name[, obs_main_path[, obs_file_path[, nc_var_name[, suffix[, var_min[, var_max]]]]]]
# By default, any pair (var, obs) is associated to the default values
# As observation name, the user is expected to provide obsid
.*, .*, *, *, *, *, *, *
# But we also want to allow institution/obsid
.*/.*, .*, /es*/obs/$OBS_NAME$/, *, *, *, *, *
# If the requested observation is in the list of reconstructions, it will be fetched in recon
$RECON_LIST$, .*, /es*/recon/*/$OBS_NAME$/, *, *, *, *, *
.*/$RECON_LIST$, .*, /es*/recon/$OBS_NAME$/, *, *, *, *, *
# As in experiments, we associate all variables of the kind varname_whatever to the folder _statistics instead of _mean
.*, .*_.*, *, *, *, _statistics, *, *
.*, (tos|tas|prlr), *, *, *, *, -999, 599
# file per dataset experiments
(ecmwf/)?nemovar-s4, moc_.*, /es*/exp/ecmwf/nemovar-s4/, $STORE_FREQ$_mean/moc/$VAR_NAME$_nemovar_s4_19570901_fc0-4_195709_201212.nc, zomsfatl, *, *, *
", max_moc_.*, ", ", maxmoc, *, *, *
", .*Pac_stc_.*, ", $STORE_FREQ$_mean/mon/$VAR_NAME$_nemovar_s4_19570901_fc0-4_195709_201108.nc, zomsfpac, *, *, *
", .*Atl_stc_.*, ", ", zomsfatl, *, *, *
", heatc, ", $STORE_FREQ$_mean/heatc/$VAR_NAME$_nemovar_s4_19570901_fc0-4_195709_201212.nc, thc, *, *, *
", .*_heatc, ", ", thc, *, *, *
# file per dataset observations
(ukmo/)?hadisst_v1.1,sien, *, $STORE_FREQ$_mean/ice/ice_hadisst_N.nc, sie, *, *, *
", sian, *, ", sia, *, *, *
", sies, *, $STORE_FREQ$_mean/ice/ice_hadisst_S.nc, sie, *, *, *
", sias, *, ", sia, *, *, *
", si(a|e|v)_.*, *, $STORE_FREQ$_mean/ice/siasie_HadISST.nc,*, *, *, *
(nasa/)?nsidc-siasie, sien, *, $STORE_FREQ$_mean/ice/ice_nsidc_N.nc, sie, *, *, *
", sian, *, ", sia, *, *, *
", sies, *, $STORE_FREQ$_mean/ice/ice_nsidc_S.nc, sie, *, *, *
", sias, *, ", sia, *, *, *
", si(a|e|v)_.*, *, $STORE_FREQ$_mean/ice/siasie_NSIDC.nc, *, *, *, *
# file per dataset reconstructions
glorys2_v1, .*heatc, *, $STORE_FREQ$_mean/heatc/$VAR_NAME$_*_19930101_fc0-0_199301_200912.nc, thc
(ucl/)?seaice-lim2, sivn, *, $STORE_FREQ$_mean/ice/siasiesiv_N_ucl_fc0-0_19790101_197901_200712.nc, siv, *, *, *
", sivs, *, $STORE_FREQ$_mean/ice/siasiesiv_S_ucl_fc0-0_19790101_197901_200712.nc, siv, *, *, *
(psc/)?piomas, sivn, *, $STORE_FREQ$_mean/ice/sivN_piomas.nc, sivN, *, *, *
# s2dverification configuration file
#
# Check ?LoadConfigurationFile after loading s2dverification for detailed
# documentation on this configuration file.
#################
!!definitions
#################
DEFAULT_EXP_MAIN_PATH = /data/exp/$EXP_NAME$/
DEFAULT_EXP_FILE_PATH = $VAR_NAME$/$START_DATE$.nc
DEFAULT_GRID = t106grid
DEFAULT_NC_VAR_NAME = $VAR_NAME$
DEFAULT_SUFFIX =
DEFAULT_VAR_MIN = -1e19
DEFAULT_VAR_MAX = 1e19
DEFAULT_OBS_MAIN_PATH = /data/$OBS_NAME$/
DEFAULT_OBS_FILE_PATH = $VAR_NAME$/$YEAR$$MONTH$.nc
DEFAULT_DIM_NAME_LONGITUDES = longitude
DEFAULT_DIM_NAME_LATITUDES = latitude
DEFAULT_DIM_NAME_MEMBERS = ensemble
######################
!!table of experiments
######################
#exp_name, var_name[, exp_main_path[, exp_file_path[, nc_var_name[, suffix[, var_min[, var_max]]]]]]]
.*, .*
#grid exception for some experiments
ecmwf, .*, *, *
#nc variable name exception for some variables
.*, sia(N|S), *, *, sia
.*, sie(N|S), *, *, sie
.*, siv(N|S), *, *, siv
#special file paths for some variables in some experimental datasets
ecmwf, tasmax, *, statistics/$VAR_NAME$/$START_DATE$.nc
#######################
!!table of observations
#######################
#obs_name, var_name[, obs_main_path[, obs_file_path[, nc_var_name[, suffix[, var_min[, var_max]]]]]]
.*, .*
#special nc variable name for some variables in some observational datasets
UCL, sivN, *, *, siv
UCL, sivS, *, *, siv
These data sets provide data in function of longitudes and latitudes for the variable 'tos', i.e. sea surface temperature, over the world from the decadal climate prediction experiment run at IC3 in the context of the CMIP5 project. The experimental data belongs to an experiment named 'i00k' in the IC3 local database.
The observational data used for verification is the 'ERSST' observational dataset, in this example.
The resolutions of the experimental and observational datasets have been drastically reduced so as to make it on CRAN. The original resolution names (under CDO conventions) were t106grid and r180x89 respectively. The final reduced resolutions are r20x10 and 16x18 respectively.
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