Newer
Older
r <- Compute(wf,
chunks = list(latitude = 10,
longitude = 3),
cluster = list(queue_host = 'cca',
queue_type = 'pbs',
max_jobs = 10,
init_commands = list('module load ecflow'),
r_module = 'R/3.3.1',
extra_queue_params = list('#PBS -l EC_billing_account=spesiccf')),
ecflow_output_dir = '/perm/ms/spesiccf/c3ah/startR_test/',
is_ecflow_output_dir_shared = FALSE
)
```
```r
cluster = list(queue_host = 'p9login1.bsc.es',
queue_type = 'slurm',
temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/',
lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.5/',
r_module = 'R/3.5.0-foss-2018b',
cores_per_job = 4,
job_wallclock = '00:10:00',
max_jobs = 4,
bidirectional = FALSE,
polling_period = 10
)
```
```r
cluster = list(queue_host = 'bsceslogin01.bsc.es',
queue_type = 'slurm',
temp_dir = '/home/Earth/nmanuben/startR_hpc/',
cores_per_job = 2,
job_wallclock = '00:10:00',
max_jobs = 4,
bidirectional = TRUE
)
```
```r
cluster = list(queue_host = 'mn2.bsc.es',
queue_type = 'slurm',
data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/',
temp_dir = '/gpfs/scratch/pr1efe00/pr1efe03/startR_hpc/',
lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.4/',
r_module = 'R/3.4.0',
cores_per_job = 2,
job_wallclock = '00:10:00',
max_jobs = 4,
extra_queue_params = list('#SBATCH --qos=prace'),
bidirectional = FALSE,
polling_period = 10,
special_setup = 'marenostrum4'
)
```
```r
cluster = list(queue_host = 'nord1.bsc.es',
queue_type = 'lsf',
data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/',
temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/',
lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.3/',
init_commands = list('module load intel/16.0.1'),
r_module = 'R/3.3.0',
cores_per_job = 2,
job_wallclock = '00:10',
max_jobs = 4,
extra_queue_params = list('#BSUB -q bsc_es'),
bidirectional = FALSE,
polling_period = 10,
special_setup = 'marenostrum4'
)
```
```r
cluster = list(queue_host = 'mt1.bsc.es',
queue_type = 'slurm',
data_dir = '/gpfs/projects/bsc32/share/startR_data_repos/',
temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/',
lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.3/',
r_module = 'R/3.3.3',
cores_per_job = 2,
job_wallclock = '00:10:00',
max_jobs = 4,
extra_queue_params = list('#SBATCH --qos=bsc_es'),
bidirectional = FALSE,
polling_period = 10,
special_setup = 'marenostrum4'
)
```
### ECMWF ecgate (workstation) + cca/ccb (HPC)
```r
cluster = list(queue_host = 'cca',
queue_type = 'pbs',
max_jobs = 10,
init_commands = list('module load ecflow'),
r_module = 'R/3.3.1',
extra_queue_params = list('#PBS -l EC_billing_account=spesiccf')
)
```