startR chunks in power9 wont update status in ecFlow
Hi, when I run a startR job in my local machine that dispatches chunks to power9, the chunk jobs cannot update the status in ecFlow, i.e. they remain as submitted and never change to running, completed or failed. I have tested this using the configuration in the practical guide:
cluster = list(queue_host = 'p9login1.bsc.es',
queue_type = 'slurm',
temp_dir = '/gpfs/scratch/bsc32/bsc32473/startR_hpc/',
lib_dir = '/gpfs/projects/bsc32/share/R_libs/3.5/',
r_module = 'R/3.5.0-foss-2018b',
cores_per_job = 4,
job_wallclock = '00:10:00',
max_jobs = 4,
bidirectional = FALSE,
polling_period = 10
)
and also commenting the temp_dir
.
@amanriqu told me that employing wait=TRUE
option this works, and after testing it I can confirm it. However this option is not very convenient.