The specifications do not allow using an auxiliary coordinate to identify an axis. Instead always use the generic standard name "time".

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@618 d613d254-d18a-4304-b296-5125d4c4d670

It was done only for unstructured domains.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@617 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@616 d613d254-d18a-4304-b296-5125d4c4d670

The data were written in the wrong order.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@615 d613d254-d18a-4304-b296-5125d4c4d670

 - Bump the CF version to 1.5.
 - Use the same bounds dimension for all axis, including time axis.
 - Add a `standard_name` attribute for cell area variables.
 - Set the `interval` part of `cell_methods` attribute only when the write interval and the operation interval are different.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@614 d613d254-d18a-4304-b296-5125d4c4d670

 - Remove the `axis` attribute from the latitute and longitude coordinate variables when using curvilinear or unstructured grids.
 - Add the `axis="Z"` attribute only when the `positive` attribute is set for an axis.
 - Rename the `conventions` attribute to `Conventions`.
 - Add a global `title` attribute with the same content as the global `description` attribute. The old attribute might be removed in the future.
 - Remove the `title` attribute from the time coordinates.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@613 d613d254-d18a-4304-b296-5125d4c4d670

Also try to use the time units defined by the UDUnits specification.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@612 d613d254-d18a-4304-b296-5125d4c4d670

Fixes ticket #68.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@611 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@610 d613d254-d18a-4304-b296-5125d4c4d670

Fixes ticket #67.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@609 d613d254-d18a-4304-b296-5125d4c4d670

It had been forgotten in r606.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@608 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@607 d613d254-d18a-4304-b296-5125d4c4d670

Only available for non-parallel output so either if only one server is used or if the multiple file mode is enabled).

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@606 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@605 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@604 d613d254-d18a-4304-b296-5125d4c4d670

This should ensure that compilation errors are properly detected by the continuous integration tool.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@601 d613d254-d18a-4304-b296-5125d4c4d670

Added arch files for Ciclad machine (IPSL cluster) machine (needed to compile with --netcdf_lib netcdf4_seq argument).  



git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@592 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@589 d613d254-d18a-4304-b296-5125d4c4d670

- Back to previous netcdf version on Curie waiting for a way to handle specific compilation environment for different users. 
 


git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@588 d613d254-d18a-4304-b296-5125d4c4d670

Files contributed by Mike Rezny (Met Office).

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@582 d613d254-d18a-4304-b296-5125d4c4d670

Fix the Fortran interface generation to avoid generating dead code that caused a timer not to be stopped.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@581 d613d254-d18a-4304-b296-5125d4c4d670

The non-inherited value was always used even when it was empty and inheritence should have been used.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@580 d613d254-d18a-4304-b296-5125d4c4d670

Cosmetic only, the return value was never used.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@579 d613d254-d18a-4304-b296-5125d4c4d670

Some return statements were misplaced which could lead to unpredictable behavior.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@578 d613d254-d18a-4304-b296-5125d4c4d670

 - Convert parse_xml.cpp to Fortran (port r573 to the trunk).
 - Modify date_interface to work-around a problem related to xios_duration type.
 - Reorganize the XIOS module to work-around a problem related to operator overloads for xios_duration and xios_date types.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@576 d613d254-d18a-4304-b296-5125d4c4d670

 - Update NetCDF to version 4.3.3.1
 - Update PGI compiler to version 14.10 (fixes compilation for the xios-1.0 branch)
 - Update GCC compiler to version 4.9.1
 - Update Vampir to version 8.2.1
 - Various clean-ups.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@574 d613d254-d18a-4304-b296-5125d4c4d670

Previously linking would fail because a special compiler switch is required when linking a CPP code with a Fortran library using PGI. To avoid having to handle that special case, switch to Fortran.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@573 d613d254-d18a-4304-b296-5125d4c4d670

Always treats internal grids as such to avoid errors when doing further operations.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@572 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@566 d613d254-d18a-4304-b296-5125d4c4d670

Note that the trunk is currently broken and does not pass this test.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@565 d613d254-d18a-4304-b296-5125d4c4d670

Courtesy of Tomas Lovato.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@564 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@563 d613d254-d18a-4304-b296-5125d4c4d670

Fix incorrect output values when using a field_ref or the @ operator on a field computed from an operation.

The computed values were never transmitted from the source field to the destination field.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@562 d613d254-d18a-4304-b296-5125d4c4d670

Improve the message error handling by mimicking the behavior of the info/report logs.

Output the error messages to the standart error message until the context is correctly initialized. Then, output the error messages to a file if the user has set "print_file" parameter to "true".

  - Fix: Errors that occured before MPI was initialized (e.g. during the config file parsing) caused a MPI error on top of the original error.
 - Fix: The error file could sometimes be misnamed if the error happened before the context was completely known.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@548 d613d254-d18a-4304-b296-5125d4c4d670

Depending on the compiler this could cause an error during compilation.

Reported by Mike Rezny.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@547 d613d254-d18a-4304-b296-5125d4c4d670

Remove the work around in nc4_data_output.cpp which hid this bug.

Also backport this fix in XIOS 1.0.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@544 d613d254-d18a-4304-b296-5125d4c4d670

Previously no error message was displayed but the output file(s) was not written.

Also improve the error message when the calendar type or the start date is missing.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@535 d613d254-d18a-4304-b296-5125d4c4d670

The strings were only parsed until the first whitespace was encountered. Note that leading and trailing whitespaces are removed by design.

Also backport that fix to XIOS 1.0.

This commit fixes ticket #60.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@530 d613d254-d18a-4304-b296-5125d4c4d670

- Added example of getting/setting variable as global/local attribute of field/file in test_complete.
- Some cleaning in test_complete program and xml files.



git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@529 d613d254-d18a-4304-b296-5125d4c4d670

(This patch is also posted on trunk)

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@524 d613d254-d18a-4304-b296-5125d4c4d670