git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@629 d613d254-d18a-4304-b296-5125d4c4d670

After the CF-compliance changes, the hardcoded value was sometimes wrong.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@628 d613d254-d18a-4304-b296-5125d4c4d670

The specifications do not allow using an auxiliary coordinate to identify an axis. Instead always use the generic standard name "time".

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@618 d613d254-d18a-4304-b296-5125d4c4d670

- xios-1.0 tag downloaded via git-svn at /home/masif/git-stuff/models/sources-xios and now merged with local project

It was done only for unstructured domains.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@617 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@616 d613d254-d18a-4304-b296-5125d4c4d670

The data were written in the wrong order.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@615 d613d254-d18a-4304-b296-5125d4c4d670

 - Bump the CF version to 1.5.
 - Use the same bounds dimension for all axis, including time axis.
 - Add a `standard_name` attribute for cell area variables.
 - Set the `interval` part of `cell_methods` attribute only when the write interval and the operation interval are different.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@614 d613d254-d18a-4304-b296-5125d4c4d670

 - Remove the `axis` attribute from the latitute and longitude coordinate variables when using curvilinear or unstructured grids.
 - Add the `axis="Z"` attribute only when the `positive` attribute is set for an axis.
 - Rename the `conventions` attribute to `Conventions`.
 - Add a global `title` attribute with the same content as the global `description` attribute. The old attribute might be removed in the future.
 - Remove the `title` attribute from the time coordinates.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@613 d613d254-d18a-4304-b296-5125d4c4d670

Also try to use the time units defined by the UDUnits specification.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@612 d613d254-d18a-4304-b296-5125d4c4d670

Fixes ticket #68.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@611 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@610 d613d254-d18a-4304-b296-5125d4c4d670

Fixes ticket #67.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@609 d613d254-d18a-4304-b296-5125d4c4d670

It had been forgotten in r606.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@608 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@607 d613d254-d18a-4304-b296-5125d4c4d670

Only available for non-parallel output so either if only one server is used or if the multiple file mode is enabled).

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@606 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@605 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@604 d613d254-d18a-4304-b296-5125d4c4d670

This should ensure that compilation errors are properly detected by the continuous integration tool.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@601 d613d254-d18a-4304-b296-5125d4c4d670

Added arch files for Ciclad machine (IPSL cluster) machine (needed to compile with --netcdf_lib netcdf4_seq argument).  



git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@592 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@589 d613d254-d18a-4304-b296-5125d4c4d670

- Back to previous netcdf version on Curie waiting for a way to handle specific compilation environment for different users. 
 


git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@588 d613d254-d18a-4304-b296-5125d4c4d670

Files contributed by Mike Rezny (Met Office).

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@582 d613d254-d18a-4304-b296-5125d4c4d670

Fix the Fortran interface generation to avoid generating dead code that caused a timer not to be stopped.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@581 d613d254-d18a-4304-b296-5125d4c4d670

The non-inherited value was always used even when it was empty and inheritence should have been used.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@580 d613d254-d18a-4304-b296-5125d4c4d670

Cosmetic only, the return value was never used.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@579 d613d254-d18a-4304-b296-5125d4c4d670

Some return statements were misplaced which could lead to unpredictable behavior.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@578 d613d254-d18a-4304-b296-5125d4c4d670

 - Convert parse_xml.cpp to Fortran (port r573 to the trunk).
 - Modify date_interface to work-around a problem related to xios_duration type.
 - Reorganize the XIOS module to work-around a problem related to operator overloads for xios_duration and xios_date types.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@576 d613d254-d18a-4304-b296-5125d4c4d670

 - Update NetCDF to version 4.3.3.1
 - Update PGI compiler to version 14.10 (fixes compilation for the xios-1.0 branch)
 - Update GCC compiler to version 4.9.1
 - Update Vampir to version 8.2.1
 - Various clean-ups.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@574 d613d254-d18a-4304-b296-5125d4c4d670

Previously linking would fail because a special compiler switch is required when linking a CPP code with a Fortran library using PGI. To avoid having to handle that special case, switch to Fortran.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@573 d613d254-d18a-4304-b296-5125d4c4d670

Always treats internal grids as such to avoid errors when doing further operations.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@572 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@566 d613d254-d18a-4304-b296-5125d4c4d670

Note that the trunk is currently broken and does not pass this test.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@565 d613d254-d18a-4304-b296-5125d4c4d670

Courtesy of Tomas Lovato.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@564 d613d254-d18a-4304-b296-5125d4c4d670

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@563 d613d254-d18a-4304-b296-5125d4c4d670

Fix incorrect output values when using a field_ref or the @ operator on a field computed from an operation.

The computed values were never transmitted from the source field to the destination field.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@562 d613d254-d18a-4304-b296-5125d4c4d670

Improve the message error handling by mimicking the behavior of the info/report logs.

Output the error messages to the standart error message until the context is correctly initialized. Then, output the error messages to a file if the user has set "print_file" parameter to "true".

  - Fix: Errors that occured before MPI was initialized (e.g. during the config file parsing) caused a MPI error on top of the original error.
 - Fix: The error file could sometimes be misnamed if the error happened before the context was completely known.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@548 d613d254-d18a-4304-b296-5125d4c4d670

Depending on the compiler this could cause an error during compilation.

Reported by Mike Rezny.

git-svn-id: http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0@547 d613d254-d18a-4304-b296-5125d4c4d670