Specifically add the HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM flag when
loading configuration from HWLOC library. Previous logic in
task/cgroup did not do this, which was different behaviour from
how slurmd gets configuration information. Here's the HWLOC
documentation:
HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM
Detect the whole system, ignore reservations and offline settings.
Gather all resources, even if some were disabled by the administrator.
For instance, ignore Linux Cpusets and gather all processors and memory
nodes, and ignore the fact that some resources may be offline.

Without this flag, I was rarely observing a bad core count, which
resulted in the logic layout out tasks wrong and generating an error:
task/cgroup: task[0] infinite loop broken while trying to provision compute elements using cyclic

bug 2502