README.md

# The workflow 

run 10 years saving the restarts:

`run_nemo -p param/param.cfg -s `


once this run finishes the other two can be lounched:
this one is because we need output.init.nc file, and from the previuos one we just have restarts.

`run_nemo -p param/param_init_state.cfg -s`

this one will save the initial state generate from the restart of the first one + white noise on the temperature

`run_nemo -p param/param_pert.cfg -s`

at this point run

`python3 RMSE.py  init_state.nc inital_state_pert.nc`

the two files will be found in the run folder of the respective runs.
From the output save the variables that differs more than say 10^(-7), and set an analysis with
```
error_thresholds = {"votemper": 0.0007167909394343306,
                    "vozocrtx": 7.003275906953925e-07,
                    "vomecrty": 6.99310434885036e-07,
                    "sohefldo": 0.00885575338581615,
                    "sozotaux": 1.0108048009931158e-06,
                    "sometauy": 1.1480837664543964e-06}
```

                    
The result of the analisys should be

| variable   | routine         | domain |
| ------     | ------          | -----|
| gdept\_n   | main	           |   dom_oce |
 | gde3w\_n  | main	           |   dom_oce |
 | zn	     | eos_insitu_pot  |   eosbn2 |
 | zn0	     | eos_insitu_pot  |   eosbn2 |
 | dta	     | fld_interp	   |   fldread |