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#!/bin/bash
set -evx
function delete {
at now +7 days << EOF
rm -rf $WORKDIR
EOF
}
pabretonniere
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msg='Your experiment crashed! Your workdir \($WORKDIR\) will be kept for one week from now and then deleted'
trap "echo $msg ; delete ; exit" SIGINT SIGHUP SIGTERM SIGSEGV SIGKILL EXIT
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#################################
#### User Defined Funtions ####
#################################
# check if args are ok and read options in config_file
if [ $# -ne 1 ] ; then
echo
echo "USAGE: config_file "
echo "For example: ./ocean_pp.new.bash /home/Earth/$user/es_git/ocean_diagnostics/config_file "
echo
exit 1
fi
config_file=$1
. ${config_file}
if [[ ${listpost[@]} =~ "psi" ]] ; then
echo "The list of diags require grid_U"
if [[ ${listpost[@]} =~ "moc" ]] ; then
echo "The list of diags require grid_V"
list_files=$(echo ${list_files} grid_V)
fi
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if [[ ${listpost[@]} =~ "ice" ]] || [[ ${listpost[@]} =~ "siasiesiv" ]]; then
echo "The list of diags contains ice"
list_files=$(echo ${list_files} icemod)
fi
###############################################################################
#
# moc needs to be computed before max_moc and area_moc
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*moc*} != ${listpost[@]} ]] || [[ ${listpost[@]##*stc*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#moc} != ${listpost[@]:1} ]] ; then
listpost=( 'moc' "${listpost[@]#moc}" )
fi
fi
#
# psi needs to be computed before gyres
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*gyres*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#psi} != ${listpost[@]:1} ]] ; then
listpost=( 'psi' "${listpost[@]#psi}" )
fi
fi
#
# oce raw outputs need to be extracted before convection option
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##*convection*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#ext_raw_oce} != ${listpost[@]:1} ]] ; then
listpost=( 'ext_raw_oce' "${listpost[@]#ext_raw_oce}" )
fi
fi
#
# 3d interpolation required before average T sections over longitudes
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ ${listpost[@]##TSec_ave*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#3dtemp} != ${listpost[@]:1} ]] ; then
listpost=( '3dtemp' "${listpost[@]#3dtemp}" )
warning_T=.true.
fi
fi
if [[ ${listpost[@]##SSec_ave*} != ${listpost[@]} ]] ; then
if [[ ${listpost[@]#3dsal} != ${listpost[@]:1} ]] ; then
listpost=( '3dsal' "${listpost[@]#3dsal}" )
warning_S=.true.
fi
fi
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? If your new diagnostic relies on an already
# existing diagnotics, you might need similar lignes to the above ones
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
#
# Preparing WORKDIR and set of available functions
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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export WORKDIR=/scratch/${USER}/tmp/post_ocean/$$
mkdir -p $WORKDIR
cd $WORKDIR
source $PATHCOMMONOCEANDIAG/common_ocean_post.txt
#
# Interval of lead months be post-processed
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
case $expid in
'nemovar_s4'|'nemovar_combine') moni=09 ; syeari=1957 ; syearf=1957 ; insdate=1 ; typeoutput='MMO' ; NEMOVERSION='nemovar_O1L42' ;;
'glorys2v1') moni=01 ; syeari=1993 ; syearf=1993 ; insdate=1 ; typeoutput='MMO' ;;
esac
case $expid in
'nemovar_s4') rootout='/esnas/exp/ECMWF/NEMOVAR_S4/monthly_mean' ;;
'nemovar_combine') rootout='/esnas/exp/ECMWF/NEMOVAR_COMBINE/monthly_mean' ;;
'glorys2v1') rootout='/esnas/exp/MERCATOR/GLORYS2V1/monthly_mean';;
esac
if [[ ${listpost[@]##max_moc} != ${listpost[@]} ]] || [[ -z "$ltimef" ]] || [[ -z "$ltime0" ]] ; then
if [[ ! -z "$year0" ]] && [[ ! -z "$yearf" ]] ; then
ltime0=$(((${year0}-${syeari})*12+1))
ltimef=$(((${yearf}-${syeari}+1-(10#$moni+10)/12)*12))
fi
fi
mon0=$(( (10#$moni+$ltime0-2)%12+1 ))
monf=$(( (10#$moni+$ltimef-2)%12+1 ))
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#
# Check on the consistency between the chunk length and the leadtimes
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ $((($ltimef-$ltime0+1)%$chunklen)) != 0 || $((($ltime0-1)%$chunklen)) != 0 ]] ; then
echo "This a safety stop because we think you might have made a mistake in your configuration file"
echo "Unless you have run your experiment with a variable chunk length, you should have"
echo "a number of leadtimes to post-process that is a multiple of the chunken and the first"
echo "leadtime should be right after the end of a chunk"
echo "If you have run your experiment with a variable chunk length, please remove l.85-93 of ocean_pp.bash"
exit 1
fi
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# Loop on start dates
# ~~~~~~~~~~~~~~~~~~~~~
if [[ $intsdate -eq 0 ]] ; then intsdate=1 ; fi # if only one start date, user might set
# intsdates to 0 which leads to an infinite loop below
for ((yeari=$syeari;yeari<=$syearf;yeari=$(($yeari+intsdate)))) ; do
#
# Interval of years to be post-processed
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
year0=$(($yeari+(10#$moni+$ltime0-2)/12))
yearf=$(($yeari+(10#$moni+$ltimef-2)/12))
for memb in ${listmemb[@]} ; do
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
case $expid in
'nemovar_s4'|'nemovar_combine') get_nemovar ${expid} ${memb} ${year0} ${yearf} ${mon0} ${monf} "${list_files}"
'glorys2v1') get_glorys ${year0} ${yearf} ${mon0} ${monf} ;;
*) freqout=${rootout:${#rootout}-12} ; freqout=${freqout/_mean} ; freqout=${freqout/*\/}
get_diagsMMO ${yeari}${moni}01 ${expid} ${memb} $ltime0 $ltimef $chunklen $mod $typeoutput $freqout "${list_files}"
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esac
#
# Ready for the post-processing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
for post in ${listpost[@]} ; do
case $post in
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? Enter its call right here under the flag chosen
# Remember to consider both 'MMO' and 'diags' cases
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
'ext_raw_oce')
if [[ $typeoutput == 'MMO' ]] ; then
lstvars=`cdo showvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc`
if [[ $raw_vars_ocean == '' ]] ; then
lstext=`echo $lstvars | sed s/\ /,/g`
else
if [[ $raw_vars_ocean == 'default' ]] ; then
lstextvar=( 'sosstsst' 'sosaline' 'somixhgt' 'somxl010' )
lstext=''
for varex in ${lstextvar[@]} ; do
if [[ ${lstvars/${varex}/} != ${lstvars} ]] ; then
lstext=`echo ${lstext} ${varex}|sed s/\ /,/g`
fi
done
else
lstext=`echo ${raw_vars_ocean[@]} |sed s/\ /,/g`
fi
fi
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if [ -z "$lstext" ] ; then
echo "The list of variables you wish to extract is not in your outputs"
exit 1
else
ncks -O -v ${lstext} grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
# ncks -O -v ${lstext[@]} grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'ext_raw_ice')
if [[ $typeoutput == 'MMO' ]] ; then
lstvars=`cdo showvar icemod_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc`
if [[ $raw_vars_ice == '' ]] ; then
lstext=`echo $lstvars | sed s/\ /,/g`
else
if [[ $raw_vars_ice == 'default' ]] ; then
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lstextvar=( 'isnowthi' 'iicethic' 'ileadfra' 'iicetemp' 'ice_pres' )
lstext=''
for varex in ${lstextvar[@]} ; do
if [[ ${lstvars/${varex}/} != ${lstvars} ]] ; then
lstext=`echo ${lstext} ${varex}|sed s/\ /,/g`
fi
done
else
lstext=`echo $raw_vars_ice |sed s/\ /,/g`
fi
fi
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if [ -z "$lstext" ] ; then
echo "The list of variables you wish to extract is not in your outputs"
exit 1
else
ncks -O -v ${lstext} icemod_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ice_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'heat_sal_mxl')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f heat_sal_mxl_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
heat_sal_mxl grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc heat_sal_mxl_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'psi')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
psi grid_U_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc grid_V_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'gyres')
gyres psi_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $NEMOVERSION gyres_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_300-5400m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeansal grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 300 5400 sal_300-5400m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeansal grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0 300 sal_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
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'temp_lev')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f temp_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeanvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper $level1 $level2 temp_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'sal_lev')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f sal_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
vertmeanvar grid_T_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline $level1 $level2 sal_lev${level1}-${level2}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
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'ohc_specified_layer')
if [ ! -f ohc_2d_avg_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
ohc_specified_layer ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 300.0 ohc_2d_avg_0-300m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ohc_specified_layer ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 300.0 800.0 ohc_2d_avg_300-800m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'vert_Tsections')
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
for coord in 0 45 -45 -30 180 80
do
if [[ $coord == '0' ]] || [[ $coord == '45' ]] || [[ $coord == '-45' ]] ; then
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=S || direction=N
z_m=Z
else
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=W || direction=E
z_m=M
fi
coord=`echo $coord | sed -e s/-//g`
[ ! -f temp_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cutsection ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper $z_m $coord temp_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
done
;;
'vert_Ssections')
if [[ $typeoutput == 'MMO' ]] ; then
pref='grid_T'
for coord in 0 45 -45 -30 180 80
do
if [[ $coord == '0' ]] || [[ $coord == '45' ]] || [[ $coord == '-45' ]] ; then
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=S || direction=N
z_m=Z
else
[[ ` echo $coord | cut -b 1 ` == '-' ]] && direction=W || direction=E
z_m=M
fi
coord=`echo $coord | sed -e s/-//g`
[ ! -f sal_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cutsection ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline $z_m $coord sal_${coord}${direction}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
done
fi
;;
'3dtemp')
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags') pref='t3d' ;;
esac
if [ ! -f regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]; then
echo " Warning: you are about to perform a 3d interpolation "
[ $warning_T ] && echo "(because you asked for cross sections calculations)"
echo "this might take time to complete (~days), be sure you really need/want to do this..."
interp3d ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc votemper regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'3dsal')
if [[ $typeoutput == 'MMO' ]] ; then
pref='grid_T'
if [ ! -f regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]; then
echo " Warning: you are about to perform a 3d interpolation "
[ $warning_S ] && echo "(because you asked for cross sections calculations)"
echo "this might take time to complete (~days), be sure you really need/want to do this..."
interp3d ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc vosaline regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'TSec_ave190-220E')
[ ! -f TSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cdo zonmean -sellonlatbox,190,220,-90,90 regular3dT_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc TSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'SSec_ave190-220E')
if [[ $typeoutput == 'MMO' ]] ; then
[ ! -f SSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] && cdo zonmean -sellonlatbox,190,220,-90,90 regular3dS_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc SSec_ave190-220E_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'moc')
if [[ $typeoutput == 'MMO' ]] ; then
if [ ! -f moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
moc grid_V_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
fi
;;
'max_moc')
max_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 38 50 500 2000 max_moc_38N50N_500m-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
max_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 40 40 0 10000 max_moc_40N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'stc')
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 25.0 NPac_stc_0N25N_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0 zomsfpac
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc -25.0 0.0 SPac_stc_25S0S_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0 zomsfpac
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 25.0 NAtl_stc_0N25N_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc -25.0 0.0 SAtl_stc_25S0S_0-200m_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 0.0 200.0
;;
'area_moc')
if [ ! -f moc_40N55N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 40.0 55.0 moc_40N55N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
if [ ! -f moc_30N40N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then
area_moc moc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc 30.0 40.0 moc_30N40N_1-2km_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
'convection')
convection oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $NEMOVERSION convection_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
'siasiesiv' )
if [ ! -f siasiesiv_N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ]||[ ! -f siasiesiv_S_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ];then #check if ? instead of N or S works
case $typeoutput in
'MMO' ) pref='icemod' ;;
'diags') pref='ice' ;;
esac
siasiesiv ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc tmp.nc
mv ice_N_tmp.nc siasiesiv_N_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv ice_S_tmp.nc siasiesiv_S_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
fi
;;
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'siasiesivsit_Arcticreg1')
case $typeoutput in
'MMO' ) pref='icemod' ;;
'diags') pref='ice' ;;
esac
if [[ $raw_regions_ice == '' ]] ; then
lstseas=$( cdo showvar mask_regions.nc )
else
if [[ $raw_regions_ice == 'default' ]] ; then
lstseas="Baffin_Bay Baltic_Sea Barents_Sea Beaufort_Sea Bering CanArch Chukchi_Sea CntArctic CntArcticRing1 CntArcticRing2 CntArcticRing3 CntArcticRing4 CntArcticRing5 CntArcticRing6 CntArcticRing7_Lincoln_Sea CntArcticRing8 CntArcticPrf1 CntArcticPrf2r CntArcticPrf3 CntArcticPrf4 East_Siberian_Sea1 Greenland_Sea Hudson Icelandic_Sea Irminger Japan1 Kara_Sea Laptev_Sea Labrador_Sea1 Norwegian_Sea Okhotsk StLawr"
else
lstseas=$( echo ${raw_regions_ice[@]} )
fi
fi
for sea in $lstseas ; do
siasiesiv ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc tmp.nc $sea
ncks -v sia ice_N_tmp.nc sia_N_tmp.nc
ncks -v sie ice_N_tmp.nc sie_N_tmp.nc
ncks -v siv ice_N_tmp.nc siv_N_tmp.nc
ncks -v sit ice_N_tmp.nc sit_N_tmp.nc
ncrename -h -v sia,sia_$sea sia_N_tmp.nc
ncrename -h -v sie,sie_$sea sie_N_tmp.nc
ncrename -h -v siv,siv_$sea siv_N_tmp.nc
ncrename -h -v sit,sit_$sea sit_N_tmp.nc
if [ -e sia_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc ] ; then
ncks -A sia_N_tmp.nc sia_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ncks -A sie_N_tmp.nc sie_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ncks -A siv_N_tmp.nc siv_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
ncks -A sit_N_tmp.nc sit_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
rm -f sia_N_tmp.nc sie_N_tmp.nc siv_N_tmp.nc sit_N_tmp.nc ice_N_tmp.nc ice_S_tmp.nc
else
mv sia_N_tmp.nc sia_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv sie_N_tmp.nc sie_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv siv_N_tmp.nc siv_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
mv sit_N_tmp.nc sit_Arcticreg1_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
rm -f ice_N_tmp.nc ice_S_tmp.nc
fi
done
;;
esac
case `echo $post|cut -c$((${#post}-2))-${#post}` in
'ohc')
case `echo $post | cut -c1` in
'x') kmin=0 ; kmax=0 ; start=2 ; mxl=1 ;;
'l') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmin=25 ; kmax=42 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmin=23 ; kmax=46 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmin=45; kmax=75;;
esac
;;
'm') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmin=21 ; kmax=24 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmin=18 ; kmax=22 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmin=35; kmax=44;;
esac
;;
'u') kmin=1 ; start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') kmax=20 ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') kmax=17 ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') kmax=34;;
esac
;;
*) kmin="" ; kmax="" ; start=1 ; mxl=0 ;;
esac
case `echo $post | cut -c${start}-$((start+3))` in
'ohc') basin='Glob' ;;
*) basin=`echo $post | cut -c${start}-$((start+3))`
esac
case $typeoutput in
'MMO' ) pref='grid_T' ;;
'diags')
pref='t3d'
ncks -A -v somxl010,somixhgt oce_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc t3d_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
;;
esac
ohc ${pref}_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc heatc_${expid}_${yeari}${moni}01_fc${memb}_${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc $basin $mxl $kmin $kmax
;;
esac
done
# Removing the raw output from this start dates and this member
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
clean_diagsMMO ${yeari}${moni}01 ${expid} ${memb} $ltime0 $ltimef $typeoutput "${list_files}"
done
# Prepare storage : choose output directory and file name
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
for post in ${listpost[@]} ; do
case $post in
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? Enter the output directory and the prefix
# or your(s) output files under the flag chosen
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
'area_moc') dirout='moc'; files=('moc_40N55N_1-2km' 'moc_30N40N_1-2km') ;;
'stc') dirout='moc' ; files=( 'NPac_stc_0N25N_0-200m' 'SPac_stc_25S0S_0-200m' 'NAtl_stc_0N25N_0-200m' 'SAtl_stc_25S0S_0-200m' ) ;;
'max_moc') dirout='moc' ; files=('max_moc_38N50N_500m-2km' 'max_moc_40N' ) ;;
'siasiesiv' ) dirout='ice' ; files=('siasiesiv_N' 'siasiesiv_S') ;;
'siasiesivsit_Arcticreg1' ) dirout='ice' ; files=('sia_Arcticreg1' 'sie_Arcticreg1' 'siv_Arcticreg1' 'sit_Arcticreg1') ;;
'moc') dirout='moc' ; files=('moc') ;;
'convection') dirout='moc' ; files=('convection') ;;
# 'ext_raw_ice') dirout='ice' ; files=('ice_raw') ;;
# 'ext_raw_oce') dirout='oce_raw' ; files=('oce_raw') ;;
'ext_raw_ice') dirout='ice' ; files=('ice') ;;
'ext_raw_oce') dirout='oce' ; files=('oce') ;;
'heat_sal_mxl') dirout='heatc' ; files=('heat_sal_mxl') ;;
'psi') dirout='psi' ; files=('psi') ;;
'gyres') dirout='psi' ; files=('gyres') ;;
'usalc') dirout='saltc' ; files=('sal_0-300m') ;;
Eleftheria Exarchou
committed
'temp_lev') dirout='temp_lev'${level1}-${level2} ; files=('temp_lev'${level1}-${level2}) ;;
'sal_lev') dirout='sal_lev'${level1}-${level2} ; files=('sal_lev'${level1}-${level2}) ;;
'lmsalc') dirout='saltc' ; files=('sal_300-5400m') ;;
'ohc_specified_layer') dirout='heatc' ; files=('ohc_2d_avg_0-300m' 'ohc_2d_avg_300-800m') ;;
'vert_Tsections') dirout='sections' ; files=('temp_0N' 'temp_45N' 'temp_45S' 'temp_30W' 'temp_80E' 'temp_180E') ;;
'vert_Ssections') dirout='sections' ; files=('sal_0N' 'sal_45N' 'sal_45S' 'sal_30W' 'sal_80E' 'sal_180E') ;;
'3dtemp') dirout='InterpT' ; files=('regular3dT') ;;
'3dsal') dirout='InterpS' ; files=('regular3dS') ;;
'TSec_ave190-220E') dirout='sections' ; files=('TSec_ave190-220E') ;;
'SSec_ave190-220E') dirout='sections' ; files=('SSec_ave190-220E') ;;
esac
case `echo $post|cut -c$((${#post}-2))-${#post}` in
'ohc')
dirout='heatc'
file='heatc'
case `echo $post | cut -c1` in
'x') mxl=1 ; start=2 ;;
'l') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='800-5350_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='855-5875_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='857-5902_'${file};;
esac
;;
'm') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='373-657_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='382-735_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='301-773_'${file};;
esac
;;
'u') start=2 ; mxl=0
case $NEMOVERSION in
'Ec2.3_O1L42'|'N3.2_O1L42'|'nemovar_O1L42') file='0-315_'${file} ;;
'Ec3.0_O1L46'|'Ec3.0_O25L46'|'N3.3_O1L46') file='0-322_'${file} ;;
'Ec3.0_O1L75'|'Ec3.0_O25L75'|'glorys2v1_O25L75') file='0-271_'${file};;
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esac
;;
*) mxl=0 ; start=1 ;;
esac
case `echo $post | cut -c${start}-$((start+3))` in
'NAtl') file='NAtl_10N65N_'${file} ;;
'TAtl') file='TAtl_30S30N_'${file};;
'NPac') file='NPac_10N70N_'${file} ;;
'TPac') file='TPac_30S30N_'${file} ;;
'Arct') file='Arc_65N90N_'${file} ;;
'Anta') file='Ant_90S60S_'${file} ;;
'TInd') file='TInd_30S30N_'${file} ;;
esac
if [[ $mxl == 1 ]] ; then
file='mxl_'$file
fi
files=( $file )
esac
pathout=${rootout}/${dirout}
mkdir -m ug+w -m o-w -p $pathout
for file in ${files[@]} ; do
prefix=${file}_${expid}_${yeari}${moni}01_fc
lsmbso=0-${listmemb[${#listmemb[@]}-1]}
#
# Merging the post-processed members together and with the previous members if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lsyrsh=${year0}$(printf "%02d" ${mon0})_${yearf}$(printf "%02d" ${monf}).nc
lsmbsh=${listmemb[0]}-${listmemb[${#listmemb[@]}-1]}
lsmbsb=0-$((${listmemb[0]}-1))
if [ -e ${pathout}/${prefix}${lsmbsb}_${lsyrsh} ] ; then
cp ${pathout}/${prefix}${lsmbsb}_${lsyrsh} .
lsmbsh=0-${listmemb[${#listmemb[@]}-1]}
gather_memb ${prefix} _${lsyrsh} ${prefix}${lsmbsh}_${lsyrsh}
for jmemb in ${listmemb[@]} ; do
rm -f ${prefix}${jmemb}_${lsyrsh}
done
#
# Concatenating the result with the previous years if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
# You have created a function ? If your diagnostic provides yearly output
# you need to use the concat option rather than the ncrcat one below.
# Any doubt ---> vguemas@ic3.cat
# @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
lsyrsb=${yeari}${moni}_$((year0-(1-(10#$moni+10)/12)))$(printf "%02d" $(((mon0-13)%12+12)) ).nc
lsyrso=${yeari}${moni}_${yearf}$(printf "%02d" ${monf}).nc
if [ -e ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ] ; then
case $post in
'max_moc' ) concat ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrsh} $(printf "%02d" ${monf}) ${prefix}${lsmbsh}_${lsyrso} ;;
*) ncrcat -O ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrsh} ${prefix}${lsmbsh}_${lsyrso} ;;
esac
else
lsyrso=$lsyrsh
fi
#
# Merging the result with the previous members if existing
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if [[ $lsyrsh != $lsyrso ]] && [[ -e ${pathout}/${prefix}${lsmbsb}_${lsyrso} ]] ; then
cp ${pathout}/${prefix}${lsmbsb}_${lsyrso} .
gather_memb ${prefix} _${lsyrso} ${prefix}${lsmbso}_${lsyrso}
else
lsmbso=$lsmbsh
fi
#
# Storing and cleaning
# ~~~~~~~~~~~~~~~~~~~~~
cp ${prefix}${lsmbso}_${lsyrso} ${pathout}/. || { if [ -e ${pathout}/${prefix}${lsmbso}_${lsyrso} ];
then
echo "${prefix}${lsmbso}_${lsyrso} already exists in ${pathout}"
sleep 5
else
echo " problem writing file in ${pathout} directory"
exit
fi
}
rm -f ${pathout}/${prefix}${lsmbsh}_${lsyrsb} ${prefix}${lsmbsh}_${lsyrso} ${prefix}${lsmbsb}_${lsyrso} ${pathout}/${prefix}${lsmbsb}_${lsyrso} ${prefix}${lsmbso}_${lsyrso} ${pathout}/${prefix}${lsmbsb}_${lsyrsh} ${prefix}${lsmbsb}_${lsyrsh}
done
done
done
trap - EXIT